Psyllid ID: psy10378

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--
Protein Sequence
MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGFLV
Secondary Structure (PSIPRED)
ccccHHHHHHcccccHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
maryldnferggisSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAnlsegflv
Flexible Loop (DISEMBL)
maryldnferggissMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQlsanlsegflv
Low Complexity Region (SEG)
MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGFLV
Disordered region (IsUnstruct)
**********GGISSMEAVVRLTVAELNALGITLVGHQKKIMNSI*****************
Disordered Region (DISOPRED)
*ARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSI*****************
Disordered Region (DISEMBL)
********ERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA********
Disordered Region (DISPRO)
MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGFLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	62	2.2.26 [Sep-21-2011]
Q15375	998	Ephrin type-A receptor 7	yes	N/A	0.838	0.052	0.596	2e-12
O42422	993	Ephrin type-A receptor 7	yes	N/A	0.838	0.052	0.596	2e-12
P54759	998	Ephrin type-A receptor 7	yes	N/A	0.838	0.052	0.596	2e-12
Q61772	998	Ephrin type-A receptor 7	yes	N/A	0.838	0.052	0.596	2e-12
O09127	1004	Ephrin type-A receptor 8	no	N/A	0.870	0.053	0.574	1e-11
P29322	1005	Ephrin type-A receptor 8	no	N/A	0.870	0.053	0.555	2e-11
P54756	1037	Ephrin type-A receptor 5	no	N/A	0.838	0.050	0.576	4e-11
P54755	1013	Ephrin type-A receptor 5	no	N/A	0.838	0.051	0.557	1e-10
P29321	372	Ephrin type-A receptor 8	no	N/A	0.854	0.142	0.566	1e-10
Q07497	1002	Ephrin type-B receptor 5	no	N/A	0.854	0.052	0.490	2e-10

>sp|Q15375|EPHA7_HUMAN Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
           M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 937 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 988

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 is a cognate/functional ligand for EPHA7 and their interaction regulates brain development modulating cell-cell adhesion and repulsion. Has a repellent activity on axons and is for instance involved in the guidance of corticothalamic axons and in the proper topographic mapping of retinal axons to the colliculus. May also regulate brain development through a caspase(CASP3)-dependent proapoptotic activity. Forward signaling may result in activation of components of the ERK signaling pathway including MAP2K1, MAP2K2, MAPK1 AND MAPK3 which are phosphorylated upon activation of EPHA7.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 1

>sp|O42422|EPHA7_CHICK Ephrin type-A receptor 7 OS=Gallus gallus GN=EPHA7 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
           M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 932 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 983

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 is a cognate/functional ligand for EPHA7 and their interaction regulates brain development modulating cell-cell adhesion and repulsion. Has a repellent activity on axons and is for instance involved in the guidance of corticothalamic axons and in the proper topographic mapping of retinal axons to the colliculus. May also regulate brain development through a caspase(CASP3)-dependent proapoptotic activity. Forward signaling may result in activation of components of the ERK signaling pathway including MAP2K1, MAP2K2, MAPK1 AND MAPK3 which are phosphorylated upon activation of EPHA7.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P54759|EPHA7_RAT Ephrin type-A receptor 7 OS=Rattus norvegicus GN=Epha7 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
           M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 937 MERYKDNFTAAGYNSLESVARMTIDDVMSLGITLVGHQKKIMSSIQTMRAQM 988

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 is a cognate/functional ligand for EPHA7 and their interaction regulates brain development modulating cell-cell adhesion and repulsion. Has a repellent activity on axons and is for instance involved in the guidance of corticothalamic axons and in the proper topographic mapping of retinal axons to the colliculus. May also regulate brain development through a caspase(CASP3)-dependent proapoptotic activity. Forward signaling may result in activation of components of the ERK signaling pathway including MAP2K1, MAP2K2, MAPK1 AND MAPK3 which are phosphorylated upon activation of EPHA7.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q61772|EPHA7_MOUSE Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
           M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 937 MERYKDNFTAAGYNSLESVARMTIDDVMSLGITLVGHQKKIMSSIQTMRAQM 988

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 is a cognate/functional ligand for EPHA7 and their interaction regulates brain development modulating cell-cell adhesion and repulsion. Has a repellent activity on axons and is for instance involved in the guidance of corticothalamic axons and in the proper topographic mapping of retinal axons to the colliculus. May also regulate brain development through a caspase(CASP3)-dependent proapoptotic activity. Forward signaling may result in activation of components of the ERK signaling pathway including MAP2K1, MAP2K2, MAPK1 AND MAPK3 which are phosphorylated upon activation of EPHA7. Isoform 4 which lacks the kinase domain may regulate isoform 1 adhesive properties.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|O09127|EPHA8_MOUSE Ephrin type-A receptor 8 OS=Mus musculus GN=Epha8 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
           M RY D+F  GG SS+  V+R+   ++ ALGITL+GHQKKI+ SIQ MR QLS+
Sbjct: 943 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLSS 996

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. The GPI-anchored ephrin-A EFNA2, EFNA3, and EFNA5 are able to activate EPHA8 through phosphorylation. With EFNA5 may regulate integrin-mediated cell adhesion and migration on fibronectin substrate but also neurite outgrowth. During development of the nervous system plays also a role in axon guidance. Downstream effectors of the EPHA8 signaling pathway include FYN which promotes cell adhesion upon activation by EPHA8 and the MAP kinases in the stimulation of neurite outgrowth.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P29322|EPHA8_HUMAN Ephrin type-A receptor 8 OS=Homo sapiens GN=EPHA8 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
           M RY D+F  GG SS+  V+R+   ++ ALGITL+GHQKKI+ SIQ MR QL++
Sbjct: 944 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTS 997

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. The GPI-anchored ephrin-A EFNA2, EFNA3, and EFNA5 are able to activate EPHA8 through phosphorylation. With EFNA5 may regulate integrin-mediated cell adhesion and migration on fibronectin substrate but also neurite outgrowth. During development of the nervous system plays also a role in axon guidance. Downstream effectors of the EPHA8 signaling pathway include FYN which promotes cell adhesion upon activation by EPHA8 and the MAP kinases in the stimulation of neurite outgrowth.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P54756|EPHA5_HUMAN Ephrin type-A receptor 5 OS=Homo sapiens GN=EPHA5 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
            M RY + F   G SSM+AV ++T+ +L  LG+TLVGHQKKIMNS+Q M+ QL
Sbjct: 979  MGRYTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNSLQEMKVQL 1030

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 most probably constitutes the cognate/functional ligand for EPHA5. Functions as an axon guidance molecule during development and may be involved in the development of the retinotectal, entorhino-hippocampal and hippocamposeptal pathways. Together with EFNA5 plays also a role in synaptic plasticity in adult brain through regulation of synaptogenesis. Beside its function in the nervous system, the interaction of EPHA5 with EFNA5 mediates communication between pancreatic islet cells to regulate glucose-stimulated insulin secretion.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P54755|EPHA5_CHICK Ephrin type-A receptor 5 OS=Gallus gallus GN=EPHA5 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
            M RY + F   G SSM++V ++T+ +L  LG+TLVGHQKKIMNS+Q M+ QL
Sbjct: 955  MGRYTEIFMENGYSSMDSVAQVTLEDLRRLGVTLVGHQKKIMNSLQEMKVQL 1006

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Among GPI-anchored ephrin-A ligands, EFNA5 most probably constitutes the cognate/functional ligand for EPHA5. Functions as an axon guidance molecule during development and may be involved in the development of the retinotectal, entorhino-hippocampal and hippocamposeptal pathways. Together with EFNA5 plays also a role in synaptic plasticity in adult brain through regulation of synaptogenesis.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P29321|EPHA8_RAT Ephrin type-A receptor 8 (Fragment) OS=Rattus norvegicus GN=Epha8 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
           M RY D+F  GG SS+  V+ +   ++ ALGITL+GHQKKI+ SIQ MR+QLS
Sbjct: 311 MGRYRDHFAAGGYSSLGMVLHMNAQDVRALGITLMGHQKKILGSIQTMRSQLS 363

Receptor tyrosine kinase which binds promiscuously GPI-anchored ephrin-A family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. The GPI-anchored ephrin-A EFNA2, EFNA3, and EFNA5 are able to activate EPHA8 through phosphorylation. With EFNA5 may regulate integrin-mediated cell adhesion and migration on fibronectin substrate but also neurite outgrowth. During development of the nervous system plays also a role in axon guidance. Downstream effectors of the EPHA8 signaling pathway include FYN which promotes cell adhesion upon activation by EPHA8 and the MAP kinases in the stimulation of neurite outgrowth.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q07497|EPHB5_CHICK Ephrin type-B receptor 5 OS=Gallus gallus GN=EPHB5 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
           M RY +NF++ G+ + + + R+T+ +L  +GITLVGHQKKI+NSIQ M+  L+
Sbjct: 943 MGRYKENFDQAGLITFDVISRMTLEDLQRIGITLVGHQKKILNSIQLMKVHLN 995

Receptor for members of the ephrin-B family.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
328714921	1073	PREDICTED: ephrin type-A receptor 4-B-li	1.0	0.057	0.838	1e-21
328714919	1033	PREDICTED: ephrin type-A receptor 4-B-li	1.0	0.060	0.838	1e-21
242023536	949	Ephrin type-B receptor 2 precursor, puta	1.0	0.065	0.725	1e-18
241839420	902	eph receptor tyrosine kinase, putative [	1.0	0.068	0.645	3e-17
321468300	936	hypothetical protein DAPPUDRAFT_104369 [	1.0	0.066	0.612	1e-16
383854812	999	PREDICTED: ephrin type-A receptor 4-A-li	0.983	0.061	0.645	3e-16
345493863	1014	PREDICTED: ephrin type-A receptor 4-A-li	0.983	0.060	0.661	4e-16
332031367	1025	Ephrin type-A receptor 4 [Acromyrmex ech	0.983	0.059	0.645	8e-16
322797520	88	hypothetical protein SINV_00865 [Solenop	0.983	0.693	0.645	1e-15
61316393	996	Eph receptor tyrosine kinase precursor [	0.983	0.061	0.629	1e-15

>gi|328714921|ref|XP_003245492.1| PREDICTED: ephrin type-A receptor 4-B-like isoform 2 [Acyrthosiphon pisum]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 55/62 (88%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
            MARYLDNFE+ GI S +AV RLTVA+L ALGITLVGHQKKIMNSIQAMR Q SANLSEGF
Sbjct: 1012 MARYLDNFEQAGIVSPKAVARLTVADLTALGITLVGHQKKIMNSIQAMRAQFSANLSEGF 1071

Query: 61   LV 62
            LV
Sbjct: 1072 LV 1073

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714919|ref|XP_003245491.1| PREDICTED: ephrin type-A receptor 4-B-like isoform 1 [Acyrthosiphon pisum]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 55/62 (88%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
            MARYLDNFE+ GI S +AV RLTVA+L ALGITLVGHQKKIMNSIQAMR Q SANLSEGF
Sbjct: 972  MARYLDNFEQAGIVSPKAVARLTVADLTALGITLVGHQKKIMNSIQAMRAQFSANLSEGF 1031

Query: 61   LV 62
            LV
Sbjct: 1032 LV 1033

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023536|ref|XP_002432188.1| Ephrin type-B receptor 2 precursor, putative [Pediculus humanus corporis] gi|212517585|gb|EEB19450.1| Ephrin type-B receptor 2 precursor, putative [Pediculus humanus corporis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/62 (72%), Positives = 53/62 (85%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
           MARYL+NF +  I++M+ V RLTV EL ALGITLVGHQKKIMNS+Q +R Q+SANLSEGF
Sbjct: 888 MARYLENFAQAEITTMDDVCRLTVKELTALGITLVGHQKKIMNSVQVLRAQISANLSEGF 947

Query: 61  LV 62
           LV
Sbjct: 948 LV 949

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241839420|ref|XP_002415239.1| eph receptor tyrosine kinase, putative [Ixodes scapularis] gi|215509451|gb|EEC18904.1| eph receptor tyrosine kinase, putative [Ixodes scapularis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
           M RYL++F+R G SSMEAV RLT+ +L ALG+ LVGHQKKIMNS+Q +R Q++A +S+GF
Sbjct: 841 MTRYLESFQRSGFSSMEAVSRLTLKDLTALGVVLVGHQKKIMNSVQTLRAQMNATMSDGF 900

Query: 61  LV 62
           LV
Sbjct: 901 LV 902

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468300|gb|EFX79285.1| hypothetical protein DAPPUDRAFT_104369 [Daphnia pulex]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 55/62 (88%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
           ++RY+DNF++ G+++++AV RL+ A+L+ LGI L+GHQ+KIMNSIQAMR QLS ++SEGF
Sbjct: 875 LSRYVDNFQQAGVTTLDAVTRLSHADLSGLGIILLGHQRKIMNSIQAMRAQLSISMSEGF 934

Query: 61  LV 62
           LV
Sbjct: 935 LV 936

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854812|ref|XP_003702914.1| PREDICTED: ephrin type-A receptor 4-A-like [Megachile rotundata]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
           M+RY +NFER G++++EA  R+TV EL ALG+TLVGHQKKIMNS+ A+R Q+SA  S+GF
Sbjct: 939 MSRYTENFERSGVTTLEAAARVTVQELTALGVTLVGHQKKIMNSVTALRAQMSAT-SQGF 997

Query: 61  LV 62
           LV
Sbjct: 998 LV 999

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493863|ref|XP_001606593.2| PREDICTED: ephrin type-A receptor 4-A-like isoform 1 [Nasonia vitripennis]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
            M+RY ++FER G++S+EA  R+TV EL ALGITLVGHQKKIMNS+ A+R Q+SA  S+GF
Sbjct: 954  MSRYAESFERAGVTSLEAAARVTVQELTALGITLVGHQKKIMNSVTALRAQMSAT-SQGF 1012

Query: 61   LV 62
            LV
Sbjct: 1013 LV 1014

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031367|gb|EGI70880.1| Ephrin type-A receptor 4 [Acromyrmex echinatior]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1    MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
            M+RY ++FER G++++EA  R+TV EL ALGITLVGHQKKIMNS+ A+R Q+SA  S+GF
Sbjct: 965  MSRYAESFERAGVTTLEAAARVTVQELTALGITLVGHQKKIMNSVTALRAQMSAT-SQGF 1023

Query: 61   LV 62
            LV
Sbjct: 1024 LV 1025

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797520|gb|EFZ19564.1| hypothetical protein SINV_00865 [Solenopsis invicta]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
          M+RY ++FER G++++EA  R+TV EL ALGITLVGHQKKIMNS+ A+R Q+SA  S+GF
Sbjct: 28 MSRYAESFERAGVTTLEAAARVTVQELTALGITLVGHQKKIMNSVTALRAQMSAT-SQGF 86

Query: 61 LV 62
          LV
Sbjct: 87 LV 88

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|61316393|ref|NP_001013024.1| Eph receptor tyrosine kinase precursor [Apis mellifera] gi|60256561|gb|AAX14899.1| ephrin receptor [Apis mellifera]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF 60
           M+RY ++FER G++++EA  R+TV EL ALG+TLVGHQKKIMNS+ A+R Q+SA  S+GF
Sbjct: 936 MSRYAESFERSGVTTLEAAARVTVQELTALGVTLVGHQKKIMNSVTALRAQMSAT-SQGF 994

Query: 61  LV 62
           LV
Sbjct: 995 LV 996

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
ZFIN|ZDB-GENE-030131-3745	1016	epha7 "eph receptor A7" [Danio	0.838	0.051	0.596	3.5e-11
UNIPROTKB|F1RY15	965	EPHA7 "Uncharacterized protein	0.838	0.053	0.596	6.9e-11
UNIPROTKB|O42422	993	EPHA7 "Ephrin type-A receptor	0.838	0.052	0.596	7.1e-11
UNIPROTKB|E2R7J5	998	EPHA7 "Uncharacterized protein	0.838	0.052	0.596	7.2e-11
UNIPROTKB|Q15375	998	EPHA7 "Ephrin type-A receptor	0.838	0.052	0.596	7.2e-11
UNIPROTKB|F1N780	1007	EPHA7 "Uncharacterized protein	0.838	0.051	0.596	7.3e-11
MGI|MGI:95276	998	Epha7 "Eph receptor A7" [Mus m	0.838	0.052	0.596	9.2e-11
RGD|70957	998	Epha7 "Eph receptor A7" [Rattu	0.838	0.052	0.596	9.2e-11
RGD|708543	372	Epha8 "Eph receptor A8" [Rattu	0.854	0.142	0.566	2.2e-10
UNIPROTKB|P29321	372	Epha8 "Ephrin type-A receptor	0.854	0.142	0.566	2.2e-10

ZFIN|ZDB-GENE-030131-3745 epha7 "eph receptor A7" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY+DNF   G SS+E+V R+T+ ++ +LGI+LVGHQKKIM+SIQ MR Q+
Sbjct:   955 MERYMDNFTAAGYSSLESVARMTIEDVMSLGISLVGHQKKIMSSIQTMRAQM 1006

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005003 "ephrin receptor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RY15 EPHA7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   904 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 955

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0048755 "branching morphogenesis of a nerve" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0031952 "regulation of protein autophosphorylation" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0022407 "regulation of cell-cell adhesion" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005004 "GPI-linked ephrin receptor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|O42422 EPHA7 "Ephrin type-A receptor 7" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   932 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 983

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0048755 "branching morphogenesis of a nerve" evidence=IEA

GO:0007420 "brain development" evidence=ISS

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISS

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0022407 "regulation of cell-cell adhesion" evidence=ISS

GO:0031952 "regulation of protein autophosphorylation" evidence=ISS

GO:0005004 "GPI-linked ephrin receptor activity" evidence=ISS

GO:0008046 "axon guidance receptor activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=ISS

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|E2R7J5 EPHA7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   937 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 988

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005003 "ephrin receptor activity" evidence=IEA

UNIPROTKB|Q15375 EPHA7 "Ephrin type-A receptor 7" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   937 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 988

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=ISS

GO:0016310 "phosphorylation" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=IDA

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=IDA

GO:0022407 "regulation of cell-cell adhesion" evidence=ISS

GO:0031952 "regulation of protein autophosphorylation" evidence=ISS

GO:0005004 "GPI-linked ephrin receptor activity" evidence=ISS

GO:0008046 "axon guidance receptor activity" evidence=ISS

GO:0050919 "negative chemotaxis" evidence=ISS

GO:0048755 "branching morphogenesis of a nerve" evidence=ISS

GO:0045499 "chemorepellent activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1N780 EPHA7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   946 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 997

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0048755 "branching morphogenesis of a nerve" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0031952 "regulation of protein autophosphorylation" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0022407 "regulation of cell-cell adhesion" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005004 "GPI-linked ephrin receptor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

MGI|MGI:95276 Epha7 "Eph receptor A7" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   937 MERYKDNFTAAGYNSLESVARMTIDDVMSLGITLVGHQKKIMSSIQTMRAQM 988

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=ISO

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0005003 "ephrin receptor activity" evidence=IEA

GO:0005004 "GPI-linked ephrin receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0008046 "axon guidance receptor activity" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0022407 "regulation of cell-cell adhesion" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0031952 "regulation of protein autophosphorylation" evidence=IDA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045499 "chemorepellent activity" evidence=IDA

GO:0046875 "ephrin receptor binding" evidence=ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;IDA

GO:0048755 "branching morphogenesis of a nerve" evidence=IMP

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=ISO;IDA

GO:0050919 "negative chemotaxis" evidence=IDA

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISO

RGD|70957 Epha7 "Eph receptor A7" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
             M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct:   937 MERYKDNFTAAGYNSLESVARMTIDDVMSLGITLVGHQKKIMSSIQTMRAQM 988

GO:0004713 "protein tyrosine kinase activity" evidence=IDA

GO:0005003 "ephrin receptor activity" evidence=NAS

GO:0005004 "GPI-linked ephrin receptor activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007420 "brain development" evidence=ISO;ISS

GO:0008046 "axon guidance receptor activity" evidence=ISO;ISS

GO:0016310 "phosphorylation" evidence=IDA

GO:0022407 "regulation of cell-cell adhesion" evidence=ISO;ISS

GO:0030425 "dendrite" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA;ISO

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0031952 "regulation of protein autophosphorylation" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO;ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO;ISS

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0045499 "chemorepellent activity" evidence=ISO;ISS

GO:0046875 "ephrin receptor binding" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0048755 "branching morphogenesis of a nerve" evidence=ISO;ISS

GO:0050730 "regulation of peptidyl-tyrosine phosphorylation" evidence=ISO;ISS

GO:0050919 "negative chemotaxis" evidence=ISO;ISS

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISO;ISS

RGD|708543 Epha8 "Eph receptor A8" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
             M RY D+F  GG SS+  V+ +   ++ ALGITL+GHQKKI+ SIQ MR+QLS
Sbjct:   311 MGRYRDHFAAGGYSSLGMVLHMNAQDVRALGITLMGHQKKILGSIQTMRSQLS 363

GO:0005004 "GPI-linked ephrin receptor activity" evidence=IEA;ISO;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO;ISS

GO:0006929 "substrate-dependent cell migration" evidence=IEA;ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA;ISO;ISS

GO:0016322 "neuron remodeling" evidence=IEA;ISO;ISS

GO:0030155 "regulation of cell adhesion" evidence=ISO;ISS

GO:0031175 "neuron projection development" evidence=ISO;ISS

GO:0031901 "early endosome membrane" evidence=IEA

GO:0033628 "regulation of cell adhesion mediated by integrin" evidence=IEA;ISO;ISS

GO:0043005 "neuron projection" evidence=IEA;ISO;ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA;ISO;ISS

GO:0043552 "positive regulation of phosphatidylinositol 3-kinase activity" evidence=IEA;ISO;ISS

GO:0046777 "protein autophosphorylation" evidence=IEA;ISO;ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

UNIPROTKB|P29321 Epha8 "Ephrin type-A receptor 8" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query:     1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
             M RY D+F  GG SS+  V+ +   ++ ALGITL+GHQKKI+ SIQ MR+QLS
Sbjct:   311 MGRYRDHFAAGGYSSLGMVLHMNAQDVRALGITLMGHQKKILGSIQTMRSQLS 363

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q61772	EPHA7_MOUSE	2, ., 7, ., 1, 0, ., 1	0.5961	0.8387	0.0521	yes	N/A
O42422	EPHA7_CHICK	2, ., 7, ., 1, 0, ., 1	0.5961	0.8387	0.0523	yes	N/A
P54759	EPHA7_RAT	2, ., 7, ., 1, 0, ., 1	0.5961	0.8387	0.0521	yes	N/A
Q15375	EPHA7_HUMAN	2, ., 7, ., 1, 0, ., 1	0.5961	0.8387	0.0521	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	62
cd09488	61	cd09488, SAM_EPH-R, SAM domain of EPH family of ty	8e-23
cd09548	70	cd09548, SAM_EPH-A7, SAM domain of EPH-A7 subfamil	2e-16
cd09550	65	cd09550, SAM_EPH-A8, SAM domain of EPH-A8 subfamil	4e-16
cd09555	69	cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamil	5e-16
cd09546	66	cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamil	5e-16
pfam00536	62	pfam00536, SAM_1, SAM domain (Sterile alpha motif)	2e-14
smart00454	68	smart00454, SAM, Sterile alpha motif	1e-13
cd09551	68	cd09551, SAM_EPH-B1, SAM domain of EPH-B1 subfamil	2e-13
pfam07647	66	pfam07647, SAM_2, SAM domain (Sterile alpha motif)	3e-13
cd09552	71	cd09552, SAM_EPH-B2, SAM domain of EPH-B2 subfamil	6e-13
cd09545	71	cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamil	7e-13
cd09549	70	cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfam	7e-13
cd09553	69	cd09553, SAM_EPH-B3, SAM domain of EPH-B3 subfamil	2e-12
cd09542	63	cd09542, SAM_EPH-A1, SAM domain of EPH-A1 subfamil	4e-12
cd09554	67	cd09554, SAM_EPH-B4, SAM domain of EPH-B4 subfamil	2e-11
cd09543	70	cd09543, SAM_EPH-A2, SAM domain of EPH-A2 family o	8e-10
cd09547	64	cd09547, SAM_EPH-A6, SAM domain of EPH-A6 subfamil	1e-09
cd09487	56	cd09487, SAM_superfamily, SAM (Sterile alpha motif	4e-08
cd09497	66	cd09497, SAM_caskin1,2_repeat1, SAM domain of cask	5e-07
cd09500	65	cd09500, SAM_AIDA1AB-like_repeat2, SAM domain of A	1e-06
cd09498	71	cd09498, SAM_caskin1,2_repeat2, SAM domain of cask	4e-06
cd09490	63	cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (a	6e-06
cd09544	63	cd09544, SAM_EPH-A3, SAM domain of EPH-A3 subfamil	7e-05
cd09511	69	cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CN	4e-04
cd09534	62	cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fun	0.003
cd09507	65	cd09507, SAM_DGK-delta-eta, SAM domain of diacylgl	0.004

>gnl|CDD|188887 cd09488, SAM_EPH-R, SAM domain of EPH family of tyrosine kinase receptors

 Score = 81.1 bits (201), Expect = 8e-23
 Identities = 27/48 (56%), Positives = 37/48 (77%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          M RY +NF   G +S++AV ++T  +L  LG+TLVGHQKKI+NSIQA+
Sbjct: 14 MGRYKENFTAAGYTSLDAVAQMTAEDLTRLGVTLVGHQKKILNSIQAL 61

SAM (sterile alpha motif) domain of EPH (erythropoietin-producing hepatocyte) family of receptor tyrosine kinases is a C-terminal signal transduction module located in the cytoplasmic region of these receptors. SAM appears to mediate cell-cell initiated signal transduction via binding proteins to a conserved tyrosine that is phosphorylated. In some cases the SAM domain mediates homodimerization/oligomerization and plays a role in the clustering process necessary for signaling. EPH kinases are the largest family of receptor tyrosine kinases. They are classified into two groups based on their abilities to bind ephrin-A and ephrin-B ligands. The EPH receptors are involved in regulation of cell movement, shape, and attachment during embryonic development; they control cell-cell interactions in the vascular, nervous, epithelial, and immune systems, and in many tumors. They are potential molecular markers for cancer diagnostics and potential targets for cancer therapy. Length = 61

>gnl|CDD|188947 cd09548, SAM_EPH-A7, SAM domain of EPH-A7 subfamily of tyrosine kinase receptors

 Score = 65.8 bits (160), Expect = 2e-16
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 19 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 70

SAM (sterile alpha motif) domain of EPH-A7 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A7 receptors and appears to mediate cell-cell initiated signal transduction. EphA7 was found expressed in human embryonic stem (ES) cells, neural tissues, kidney vasculature. EphA7 knockout mice show decrease in cortical progenitor cell death at mid-neurogenesis and significant increase in cortical size. EphA7 may be involved in the pathogenesis and development of different cancers; in particular, EphA7 was found upregulated in glioblastoma and downregulated in colorectal cancer and gastric cancer. Thus, it is a potential molecular marker and/or therapy target for these types of cancers. Length = 70

>gnl|CDD|188949 cd09550, SAM_EPH-A8, SAM domain of EPH-A8 subfamily of tyrosine kinase receptors

 Score = 64.5 bits (157), Expect = 4e-16
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY D+F  GG SS+  V+R+ + ++  LGITL+GHQKKI+ SIQ MR QL
Sbjct: 14 MGRYKDHFAAGGYSSLGMVMRMNIEDIRRLGITLMGHQKKILTSIQVMRAQL 65

SAM (sterile alpha motif) domain of EPH-A8 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A8 receptors and appears to mediate cell-cell initiated signal transduction. EPH-A8 receptors are involved in ligand dependent (ephirin A2, A3, A5) regulation of cell adhesion and migration, and in ligand independent regulation of neurite outgrowth in neuronal cells. They perform signaling in kinase dependent and kinase independent manner. EPH-A8 receptors are known to interact with a number of different proteins including PI 3-kinase and AIDA1-like subfamily SAM repeat domain containing proteins. However other domains (not SAM) of EPH-A8 receptors are involved in these interactions. Length = 65

>gnl|CDD|188954 cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamily of tyrosine kinase receptors

 Score = 64.6 bits (157), Expect = 5e-16
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          +  Y DNF + G+ +   V +L++ +L ALGITL GHQKK+++ IQ ++  L
Sbjct: 18 LECYQDNFSKFGLCTFSDVAQLSLEDLPALGITLAGHQKKLLHHIQLLQQHL 69

SAM (sterile alpha motif) domain of EPH-B6 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-B6 receptors and appears to mediate cell-cell initiated signal transduction. Receptors of this type are highly expressed in embryo and adult nervous system, in thymus and also in T-cells. They are involved in regulation of cell adhesion and migration. (EPH-B6 receptor is unusual; it fails to show catalytic activity due to alteration in kinase domain). EPH-B6 may be considered as a biomarker in some types of tumors; EPH-B6 activates MAP kinase signaling in lung adenocarcinoma, suppresses metastasis formation in non-small cell lung cancer, and slows invasiveness in some breast cancer cell lines. Length = 69

>gnl|CDD|188945 cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamily of tyrosine kinase receptors

 Score = 64.2 bits (156), Expect = 5e-16
 Identities = 32/52 (61%), Positives = 39/52 (75%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY + F   G SSM+AV ++T+ +L  LG+TLVGHQKKIMNSIQ MR QL
Sbjct: 15 MGRYTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNSIQEMRVQL 66

SAM (sterile alpha motif) domain of EPH-A5 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A5 receptors and appears to mediate cell-cell initiated signal transduction. Eph-A5 gene is almost exclusively expressed in the nervous system. Murine EPH-A5 receptors participate in axon guidance during embryogenesis and play a role in the adult synaptic plasticity, particularly in neuron-target interactions in multiple neural circuits. Additionally EPH-A5 receptors and its ligand ephrin A5 regulate dopaminergic axon outgrowth and influence the formation of the midbrain dopaminergic pathways. EphA5 gene expression was found decreased in a few different breast cancer cell lines, thus it might be a potential molecular marker for breast cancer carcinogenesis and progression. Length = 66

>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif)

 Score = 59.9 bits (146), Expect = 2e-14
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y DNF  G     +A++ LT  +L  LG+TL GH+KKI++SIQ ++
Sbjct: 15 LGQYADNFRAG-YIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQGLK 62

It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains. Length = 62

>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif

 Score = 58.5 bits (142), Expect = 1e-13
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          + +Y DNF + GI     ++  +  +L  LGIT +GH+KKI+ +IQ ++ Q
Sbjct: 18 LEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKEQ 68

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation. Length = 68

>gnl|CDD|188950 cd09551, SAM_EPH-B1, SAM domain of EPH-B1 subfamily of tyrosine kinase receptors

 Score = 57.7 bits (139), Expect = 2e-13
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          M++Y DNF   G +S++ V ++T  +L  +G+TL GHQKKI+NSIQ+MR Q
Sbjct: 18 MSQYRDNFLSSGFTSLQLVAQMTSEDLLRIGVTLAGHQKKILNSIQSMRVQ 68

SAM (sterile alpha motif) domain of EPH-B1 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH- B1 receptors. In human vascular endothelial cells it appears to mediate cell-cell initiated signal transduction via the binding of the adaptor protein GRB10 (growth factor) through its SH2 domain to a conserved tyrosine that is phosphorylated. EPH-B1 receptors play a role in neurogenesis, in particular in regulation of proliferation and migration of neural progenitors in the hippocampus and in corneal neovascularization; they are involved in converting the crossed retinal projection to ipsilateral retinal projection. They may be potential targets in angiogenesis-related disorders. Length = 68

>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif)

 Score = 57.3 bits (139), Expect = 3e-13
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y DNF   GI+  E ++RLT  +L ALGIT VGH+KKI+  IQ ++
Sbjct: 18 LPQYADNFRDQGITGGELLLRLTEEDLKALGITSVGHRKKILKKIQRLK 66

Length = 66

>gnl|CDD|188951 cd09552, SAM_EPH-B2, SAM domain of EPH-B2 subfamily of tyrosine kinase receptors

 Score = 56.6 bits (136), Expect = 6e-13
 Identities = 23/53 (43%), Positives = 38/53 (71%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y ++F   G +S + V ++T+ ++  +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 18 MGQYKESFANAGFTSFDVVSQMTMEDILRVGVTLAGHQKKILNSIQVMRAQMN 70

SAM (sterile alpha motif) domain of EPH-B2 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-B2 receptors and appears to mediate cell-cell initiated signal transduction. SAM domains of this subfamily form homodimers/oligomers (in head-to-head/tail-to-tail orientation); apparently such clustering is necessary for signaling. EPH-B2 receptor is involved in regulation of synaptic function; it is needed for normal vestibular function, proper formation of anterior commissure, control of cell positioning, and ordered migration in the intestinal epithelium. EPH-B2 plays a tumor suppressor role in colorectal cancer. It was found to be downregulated in gastric cancer and thus may be a negative biomarker for it. Length = 71

>gnl|CDD|188944 cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamily of tyrosine kinase receptors

 Score = 56.5 bits (136), Expect = 7e-13
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY DNF   G +++EAVV +   +L  +GI+ + HQ KI++S+Q MR+Q+
Sbjct: 15 MERYKDNFTAAGYTTLEAVVHMNQDDLARIGISAIAHQNKILSSVQGMRSQM 66

SAM (sterile alpha motif) domain of EPH-A4 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A4 receptors and appears to mediate cell-cell initiated signal transduction. SAM domains of EPH-A4 receptors can form homodimers. EPH-A4 receptors bind ligands such as erphirin A1, A4, A5. They are known to interact with a number of different proteins, including meltrin beta metalloprotease, Cdk5, and EFS2alpha, however SAM domain doesn't participate in these interactions. EPH-A4 receptors are involved in regulation of corticospinal tract formation, in pathway controlling voluntary movements, in formation of motor neurons, and in axon guidance (SAM domain is not required for axon guidance or for EPH-A4 kinase signaling). In Xenopus embryos EPH-A4 induces loss of cell adhesion, ventro-lateral protrusions, and severely expanded posterior structures. Mutations in SAM domain conserved tyrosine (Y928F) enhance the ability of EPH-A4 to induce these phenotypes, thus supporting the idea that the SAM domain may negatively regulate some aspects of EPH-A4 activity. EphA4 gene was found overexpressed in a number of different cancers including human gastric cancer, colorectal cancer, and pancreatic ductal adenocarcinoma. It is likely to be a promising molecular target for the cancer therapy. Length = 71

>gnl|CDD|188948 cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfamily of tyrosine kinase receptors

 Score = 56.4 bits (136), Expect = 7e-13
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          + RY DNF   G  S+EAV R+T  ++ +LGIT + HQ+ ++  IQA+R Q+
Sbjct: 19 LCRYKDNFAAAGYGSLEAVARMTAQDVLSLGITSLEHQELLLAGIQALRAQV 70

SAM (sterile alpha motif) domain of EPH-A10 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A10 receptors and appears to mediate cell-cell initiated signal transduction. It was found preferentially expressed in the testis. EphA10 may be involved in the pathogenesis and development of prostate carcinoma and lymphocytic leukemia. It is a potential molecular marker and/or therapy target for these types of cancers. Length = 70

>gnl|CDD|188952 cd09553, SAM_EPH-B3, SAM domain of EPH-B3 subfamily of tyrosine kinase receptors

 Score = 55.4 bits (133), Expect = 2e-12
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY +NF   G +S + V ++T  +L  +G+TL GHQKKI++SIQ MR Q+
Sbjct: 18 MGRYKENFVSAGFASFDLVAQMTAEDLLRIGVTLAGHQKKILSSIQDMRLQM 69

SAM (sterile alpha motif) domain of EPH-B3 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-B3 receptors and appears to mediate cell-cell initiated signal transduction. EPH-B3 receptor protein kinase performs kinase-dependent and kinase-independent functions. It is known to be involved in thymus morphogenesis, in regulation of cell adhesion and migration. Also EphB3 controls cell positioning and ordered migration in the intestinal epithelium and plays a role in the regulation of adult retinal ganglion cell axon plasticity after optic nerve injury. In some experimental models overexpression of EphB3 enhances cell/cell contacts and suppresses colon tumor growth. Length = 69

>gnl|CDD|188941 cd09542, SAM_EPH-A1, SAM domain of EPH-A1 subfamily of tyrosine kinase receptors

 Score = 54.2 bits (130), Expect = 4e-12
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQA 47
          M RY+ +F   G+ +ME V+ LT  +L  +GITL GHQK+I+ SIQ 
Sbjct: 16 MKRYILHFRSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 62

SAM (sterile alpha motif) domain of EPH-A1 subfamily of the receptor tyrosine kinases is a C-terminal protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A1 receptors and appears to mediate cell-cell initiated signal transduction. Activation of these receptors leads to inhibition of cell spreading and migration in a RhoA-ROCK-dependent manner. EPH-A1 receptors are known to bind ILK (integrin-linked kinase) which is the mediator of interactions between integrin and the actin cytoskeleton. However SAM is not sufficient for this interaction; it rather plays an ancillary role. SAM domains of Eph-A1 receptors do not form homo/hetero dimers/oligomers. EphA1 gene was found expressed widely in differentiated epithelial cells. In a number of different malignant tumors EphA1 genes are downregulated. In breast carcinoma the downregulation is associated with invasive behavior of the cell. Length = 63

>gnl|CDD|188953 cd09554, SAM_EPH-B4, SAM domain of EPH-B4 subfamily of tyrosine kinase receptors

 Score = 52.6 bits (126), Expect = 2e-11
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          M RY D+F + G ++ + V +++  +L  +G+TL GHQKKI++SIQAM  Q
Sbjct: 15 MERYEDSFLQAGFTTFQLVSQISTEDLLRMGVTLAGHQKKILSSIQAMGIQ 65

SAM (sterile alpha motif) domain of EPH-B4 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-B4 receptors and appears to mediate cell-cell initiated signal transduction. EPH-B4 protein kinase performs kinase-dependent and kinase-independent functions. These receptors play a role in the regular vascular system development during embryogenesis. They were found overexpressed in a variety of cancers, including carcinoma of the head and neck, ovarian cancer, bladder cancer, and downregulated in bone myeloma. Thus, EphB4 is a potential biomarker and a target for drug design. Length = 67

>gnl|CDD|188942 cd09543, SAM_EPH-A2, SAM domain of EPH-A2 family of tyrosine kinase receptors

 Score = 48.7 bits (116), Expect = 8e-10
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +S++ V+++T  ++  +G+ L GHQK+I  SI  ++ Q+S 
Sbjct: 17 MQQYTEHFMAAGYNSIDKVLQMTQEDIKHIGVRLPGHQKRIAYSILGLKEQVST 70

SAM (sterile alpha motif) domain of EPH-A2 subfamily of receptor tyrosine kinases is a C-terminal protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A2 receptors and appears to mediate cell-cell initiated signal transduction. For example, SAM domain of EPH-A2 receptors interacts with SAM domain of Ship2 proteins (SH2 containing phosphoinositide 5-phosphotase-2) forming heterodimers; such recruitment of Ship2 by EPH-A2 attenuates the positive signal for receptor endocytosis. Eph-A2 is found overexpressed in many types of human cancer, including breast, prostate, lung and colon cancer. High level of expression could induce cancer progression by a variety of mechanisms and could be used as a novel tag for cancer immunotherapy. EPH-A2 receptors are attractive targets for drag design. Length = 70

>gnl|CDD|188946 cd09547, SAM_EPH-A6, SAM domain of EPH-A6 subfamily of tyrosine kinase receptors

 Score = 48.3 bits (115), Expect = 1e-09
 Identities = 19/49 (38%), Positives = 37/49 (75%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          M +Y +NF   G ++++ V R+T+ ++  +G+TL+GHQ++I++SIQ +R
Sbjct: 15 MGQYKNNFMAAGFTTLDMVSRMTIDDIRRIGVTLIGHQRRIVSSIQTLR 63

SAM (sterile alpha motif) domain of EPH-A6 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A6 receptors and appears to mediate cell-cell initiated signal transduction. Eph-A6 gene is preferentially expressed in the nervous system. EPH-A6 receptors are involved in primate retina vascular and axon guidance, and in neural circuits responsible for learning and memory. EphA6 gene was significantly down regulated in colorectal cancer and in malignant melanomas. It is a potential molecular marker for these cancers. Length = 64

>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif )

 Score = 44.2 bits (105), Expect = 4e-08
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQ 46
          + +Y D F +  I   +A++ LT  +L  LGIT  GH+KKI+ +IQ
Sbjct: 11 LEQYADLFRKNEID-GDALLLLTDEDLKELGITSPGHRKKILRAIQ 55

SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases. Length = 56

>gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein repeat 1

 Score = 41.5 bits (98), Expect = 5e-07
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          +  Y  NF + G   +  + R+T  +L A+GIT  GH+KK+ + I  ++
Sbjct: 16 LEEYTPNFIKAGYD-LPTISRMTPEDLTAIGITKPGHRKKLKSEIAQLQ 63

SAM (sterile alpha motif) domain repeat 1 of caskin1,2 proteins is a protein-protein interaction domain. Caskin has two tandem SAM domains. Caskin protein is known to interact with membrane-associated guanylate kinase CASK, and apparently may play a role in neural development, synaptic protein targeting, and regulation of gene expression. Length = 66

>gnl|CDD|188899 cd09500, SAM_AIDA1AB-like_repeat2, SAM domain of AIDA1AB-like proteins, repeat 2

 Score = 40.8 bits (96), Expect = 1e-06
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 4  YLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSI 45
          Y++ F + G +SME V R+   EL N L I  +GH+K+I+ S+
Sbjct: 20 YIETFLKHGYTSMERVKRIWEVELTNVLEINKLGHRKRILASL 62

SAM (sterile alpha motif) domain repeat 2 of AIDA1AB-like proteins is a protein-protein interaction domain. AIDA1AB-like proteins have two tandem SAM domains. They may form an intramolecular head-to-tail homodimer. One of two basic motifs of the nuclear localization signal (NLS) is located within helix 5 of the SAM2 (motif HKRK). This signal plays a role in decoupling of SAM2 from SAM1, thus facilitating translocation of this type proteins into the nucleus. SAM domains of the AIDA1AB-like subfamily can directly bind ubiquitin and participate in regulating the degradation of ubiquitinated EphA receptors, particularly EPH-A8 receptor. Additionally AIDA1AB-like proteins may participate in the regulation of nucleoplasmic coilin protein interactions. Length = 65

>gnl|CDD|188897 cd09498, SAM_caskin1,2_repeat2, SAM domain of caskin protein repeat 2

 Score = 39.2 bits (92), Expect = 4e-06
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y       G  S++ V  LT  +L  +GIT +GHQKK+M +I+ ++
Sbjct: 19 LPQYHKVLVENGYDSIDFVTDLTWEDLQDIGITKLGHQKKLMLAIKKLK 67

SAM (sterile alpha motif) domain repeat 2 of caskin1,2 proteins is a protein-protein interaction domain. Caskin has two tandem SAM domains. Caskin protein is known to interact with membrane-associated guanylate kinase CASK, and may play a role in neural development, synaptic protein targeting, and regulation of gene expression. Length = 71

>gnl|CDD|188889 cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)

 Score = 38.4 bits (90), Expect = 6e-06
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 3  RYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQA 47
          +YLD F   G  +      +  + L  +GI+  GH+++I+  +  
Sbjct: 17 QYLDLFREHGYVTATDCQGINDSRLKQIGISPTGHRRRILKQLPI 61

SAM (sterile alpha motif) domain of Arap1,2,3 subfamily proteins (angiotensin receptor-associated) is a protein-protein interaction domain. Arap1,2,3 proteins are phosphatidylinositol-3,4,5-trisphosphate-dependent GTPase-activating proteins. They are involved in phosphatidylinositol-3 kinase (PI3K) signaling pathways. In addition to SAM domain, Arap1,2,3 proteins contain ArfGap, PH-like, RhoGAP and UBQ domains. SAM domain of Arap3 protein was shown to interact with SAM domain of Ship2 phosphatidylinositol-trisphosphate phosphatase proteins. Such interaction apparently plays a role in inhibition of PI3K regulated pathways since Ship2 converts PI(3,4,5)P3 into PI(3,4)P2. Proteins of this subfamily participate in regulation of signaling and trafficking associated with a number of different receptors (including EGFR, TRAIL-R1/DR4, TRAIL-R2/DR5) in normal and cancer cells; they are involved in regulation of actin cytoskeleton remodeling, cell spreading and formation of lamellipodia. Length = 63

>gnl|CDD|188943 cd09544, SAM_EPH-A3, SAM domain of EPH-A3 subfamily of tyrosine kinase receptors

 Score = 36.2 bits (83), Expect = 7e-05
 Identities = 13/37 (35%), Positives = 27/37 (72%)

Query: 14 SSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT 50
          SS + + +++  ++  +G+T+VG QKKI++SI+ + T
Sbjct: 27 SSCDTIAKISTDDMKKVGVTVVGPQKKIVSSIKTLET 63

SAM (sterile alpha motif) domain of EPH-A3 subfamily of receptor tyrosine kinases is a C-terminal putative protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A3 receptors and appears to mediate cell-cell initiated signal transduction. EPH-A3 receptors bind SH2/SH3 containing adaptor protein Nck1 and this adaptor is a key factor in EPH-A3 mediated signaling. However SAM domain is not implemented in this interaction. Activation of EPH-A3 receptors inhibits outgrowth and cell migration. Mutations in SAM domain may play a role in development of hepatocellular carcinoma. Expression of EPH-A3 is associated with lymphocytic leukemia and defines the subset of rhabdomyosarcoma tumors. EPH-A3 receptors are attractive targets for drug design. Length = 63

>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CNK1,2,3-suppressor subfamily

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4  YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          Y+  FER  ++  E ++ L+  +L  LG+T +GHQ+ I+ +++ + 
Sbjct: 23 YIYTFEREKVTG-EQLLNLSPQDLENLGVTKIGHQELILEAVELLC 67

SAM (sterile alpha motif) domain of CNK (connector enhancer of kinase suppressor of ras (Ksr)) subfamily is a protein-protein interaction domain. CNK proteins are multidomain scaffold proteins containing a few protein-protein interaction domains and are required for connecting Rho and Ras signaling pathways. In Drosophila, the SAM domain of CNK is known to interact with the SAM domain of the aveugle protein, forming a heterodimer. Mutation of the SAM domain in human CNK1 abolishes the ability to cooperate with the Ras effector, supporting the idea that this interaction is necessary for proper Ras signal transduction. Length = 69

>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily

 Score = 31.4 bits (72), Expect = 0.003
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4  YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          YLD FE+  I+  + ++ L    L  LGIT VG + +++ +I+++R
Sbjct: 18 YLDIFEKNLIT-GDLLLELDKEALKELGITKVGDRIRLLRAIKSLR 62

SAM (sterile alpha motif) domain of Ste11 subfamily is a protein-protein interaction domain. Proteins of this subfamily have SAM domain at the N-terminus and protein kinase domain at the C-terminus. They participate in regulation of mating pheromone response, invasive growth and high osmolarity growth response. MAP triple kinase Ste11 from S.cerevisia is known to interact with Ste20 kinase and Ste50 regulator. These kinases are able to form homodimers interacting through their SAM domains as well as heterodimers or heterogenous complexes when either SAM domain of monomeric or homodimeric form of Ste11 interacts with Ste50 regulator. Length = 62

>gnl|CDD|188906 cd09507, SAM_DGK-delta-eta, SAM domain of diacylglycerol kinase delta and eta subunits

 Score = 31.6 bits (72), Expect = 0.004
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          +  Y D F R  I   E ++ L   +L  LGIT VGH K+I+ +I+ +
Sbjct: 19 LGEYRDIFARNDIRGSE-LLHLERRDLKDLGITKVGHVKRILQAIKDL 65

SAM (sterile alpha motif) domain of DGK-eta-delta subfamily proteins is a protein-protein interaction domain. Proteins of this subfamily are multidomain diacylglycerol kinases with a SAM domain located at the C-terminus. DGK proteins participate in signal transduction. They regulate the level of second messengers such as diacylglycerol and phosphatidic acid. The SAM domain of DGK proteins can form high molecular weight homooligomers through head-to-tail interactions as well as heterooligomers between the SAM domains of DGK delta and eta proteins. The oligomerization plays a role in the regulation of DGK intracellular localization. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	62
KOG0196|consensus	996		99.66
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	99.6
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	99.53
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	99.45
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	99.37
KOG4384|consensus	361		99.36
KOG1170|consensus	1099		98.55
KOG4374|consensus	216		98.45
KOG4375|consensus	272		97.9
PF09597	57	IGR: IGR protein motif; InterPro: IPR019083 This e	97.55
KOG3678|consensus	832		97.04
KOG3930|consensus	389		96.47
PF04904	82	NCD1: NAB conserved region 1 (NCD1); InterPro: IPR	96.27
KOG1738|consensus	638		96.06
PF14520	60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	94.78
KOG1899|consensus	861		94.62
KOG1899|consensus	861		93.94
PRK07758	95	hypothetical protein; Provisional	92.57
TIGR01954	50	nusA_Cterm_rpt transcription termination factor Nu	92.42
PF06568	40	DUF1127: Domain of unknown function (DUF1127); Int	91.76
PF14229	122	DUF4332: Domain of unknown function (DUF4332)	87.63
KOG3835|consensus	495		87.05
PF03118	66	RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha	86.73
COG2818	188	Tag 3-methyladenine DNA glycosylase [DNA replicati	86.05
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	83.95
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	82.76
PTZ00035	337	Rad51 protein; Provisional	82.75
COG5457	63	Uncharacterized conserved small protein [Function	82.41
KOG3678|consensus	832		81.95
PF03352	179	Adenine_glyco: Methyladenine glycosylase; InterPro	80.25

>KOG0196|consensus

Probab=99.66  E-value=1.2e-16  Score=116.67  Aligned_cols=62  Identities=44%  Similarity=0.649  Sum_probs=59.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGFLV   62 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~~~~   62 (62)
                      |++|+++|.++||++++.+.+++.+||.++|||.+||||||+.+|+.++.|+.+.+.+++|+
T Consensus       935 m~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~q~~~~~~~~~~~  996 (996)
T KOG0196|consen  935 MGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAMRAQMRQTQPVEVPG  996 (996)
T ss_pred             hhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHHHHHhccCCCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999888874

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.60  E-value=2.1e-15  Score=79.71  Aligned_cols=48  Identities=38%  Similarity=0.659  Sum_probs=43.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |++|.+.| .+++.+++.+..++++||.+|||+.+|||+||+.+|+.||
T Consensus        17 l~~y~~~F-~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen   17 LEQYAENF-EKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             GGGGHHHH-HHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHH-HcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            57999999 6667699999999999999999999999999999999886

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.53  E-value=2.1e-14  Score=76.14  Aligned_cols=49  Identities=39%  Similarity=0.803  Sum_probs=45.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      +++|.+.|.++|++.++.+..++++||.++||+.+|||++|+++++.|+
T Consensus        18 l~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk   66 (66)
T PF07647_consen   18 LEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK   66 (66)
T ss_dssp             CGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999544999999999999999999999999999999886

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>cd00166 SAM Sterile alpha motif

Probab=99.45  E-value=1.2e-13  Score=71.70  Aligned_cols=48  Identities=44%  Similarity=0.771  Sum_probs=44.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      +++|.+.|.++++ +++.+..++.+||.+|||+.+|||++|+.+++.++
T Consensus        16 ~~~y~~~f~~~~i-~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~   63 (63)
T cd00166          16 LGQYADNFRENGI-DGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK   63 (63)
T ss_pred             hHHHHHHHHHcCC-CHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            4689999999999 89999999999999999999999999999998763

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>smart00454 SAM Sterile alpha motif

Probab=99.37  E-value=1.5e-12  Score=68.13  Aligned_cols=49  Identities=41%  Similarity=0.732  Sum_probs=44.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCC-HHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLT-VAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt-~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      +++|.+.|.++++ +...+..++ .+||.++||+.+|||++|+.+|+.++.
T Consensus        18 ~~~y~~~f~~~~i-~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~   67 (68)
T smart00454       18 LEQYADNFRKNGI-DGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD   67 (68)
T ss_pred             hHHHHHHHHHCCC-CHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence            4689999999999 677788887 999999999999999999999999875

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>KOG4384|consensus

Probab=99.36  E-value=6.8e-13  Score=89.93  Aligned_cols=54  Identities=22%  Similarity=0.489  Sum_probs=50.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |++|...|..+||++++.|.+++++||.+|||.+|+||||||.+++.++..-+.
T Consensus       227 le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~  280 (361)
T KOG4384|consen  227 LEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSG  280 (361)
T ss_pred             HHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence            689999999999999999999999999999999999999999999999876554

>KOG1170|consensus

Probab=98.55  E-value=2.9e-08  Score=73.55  Aligned_cols=52  Identities=33%  Similarity=0.613  Sum_probs=48.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |.+|.+.|..+.+ ....++++...||+++||+++||-|+|+.+|.+|+++.+
T Consensus      1012 LsEy~d~f~kndi-rGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl~~~~~ 1063 (1099)
T KOG1170|consen 1012 LSEYKDTFRKNDI-RGSELLHLERRDLKDLGVTKVGHVKRILSAIKDLRAQNQ 1063 (1099)
T ss_pred             cchhhhhhhccCc-ccceeeecCcccccccchhhhHHHHHHHHHHHHHHhcch
Confidence            6799999999999 799999999999999999999999999999999976655

>KOG4374|consensus

Probab=98.45  E-value=4.3e-08  Score=63.15  Aligned_cols=51  Identities=31%  Similarity=0.519  Sum_probs=47.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL   52 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~   52 (62)
                      |++|...|....+ +++.+..+|++||++|||+..|.|+||+.|+..++...
T Consensus       163 lg~y~~~f~~~ev-d~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~~~  213 (216)
T KOG4374|consen  163 LGAYWKMFEAIEV-DMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRRSF  213 (216)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhcccchhhhhcccccCcchhhhhhhhcccccc
Confidence            5789999999999 79999999999999999999999999999999887543

>KOG4375|consensus

Probab=97.90  E-value=9.6e-06  Score=53.72  Aligned_cols=47  Identities=26%  Similarity=0.421  Sum_probs=44.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      |.+|.+.|.++.+ +...+-.++.+|..++|||.+|||..|=.|++.|
T Consensus       224 L~E~~~aF~d~eI-dG~hLp~l~k~df~~LGVTRVgHRmnIerALr~l  270 (272)
T KOG4375|consen  224 LIEYDDAFHDIEI-DGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQL  270 (272)
T ss_pred             hhhcchhhhhccc-ccchhhhcchhhhhcccchhhhhHHHHHHHHHHh
Confidence            5789999999999 7999999999999999999999999999988765

>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif

Probab=97.55  E-value=0.0002  Score=37.70  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=35.6

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      ++|.+.|..    +++.+..++..+|+++|| ++-+||-||......+
T Consensus        13 ~~~~~kf~~----~w~~lf~~~s~~LK~~GI-p~r~RryiL~~~ek~r   55 (57)
T PF09597_consen   13 EEHAEKFES----DWEKLFTTSSKQLKELGI-PVRQRRYILRWREKYR   55 (57)
T ss_pred             HHHHHHHHH----HHHHHHhcCHHHHHHCCC-CHHHHHHHHHHHHHHh
Confidence            456677754    589999999999999999 6999999998766554

Its function is unknown.

>KOG3678|consensus

Probab=97.04  E-value=0.00068  Score=49.16  Aligned_cols=48  Identities=19%  Similarity=0.464  Sum_probs=44.5

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHH
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      ++|++.|...-+ +.+.++++|+.||+ ++|...-=||||.+..++.|+.
T Consensus       480 eeY~EkFakQ~V-DGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv  528 (832)
T KOG3678|consen  480 EEYVEKFAKQMV-DGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKV  528 (832)
T ss_pred             HHHHHHHHHHhc-cchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            689999999988 79999999999999 8999888899999999999974

>KOG3930|consensus

Probab=96.47  E-value=0.0051  Score=42.25  Aligned_cols=50  Identities=28%  Similarity=0.525  Sum_probs=43.7

Q ss_pred             chHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          3 RYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      .|.-.|..|-+ .-+-+++|+.+=|.+||||..|.+--||..+...+.|..
T Consensus        20 ~YA~~Fv~NRI-qk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~v~~q~~   69 (389)
T KOG3930|consen   20 KYAKSFVTNRI-QKEMLLDLNKETLSELGVTAIGDIIAILRHIKAVKSQIE   69 (389)
T ss_pred             hHHHHHHhhhh-hHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence            47777777777 577899999999999999999999999999999987765

>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []

Probab=96.27  E-value=0.0095  Score=33.24  Aligned_cols=50  Identities=18%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcC----CCC-CchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNAL----GIT-LVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~l----GIt-~~gh~kkIl~~i~~l~~   50 (62)
                      |.+|-+.|.+.|-+++++++...++|..++    |.+ +|=|-+|+.++++++..
T Consensus        21 Ll~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~   75 (82)
T PF04904_consen   21 LLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWST   75 (82)
T ss_pred             HHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhc
Confidence            458999999999999999999999887653    443 48899999999988754

This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1738|consensus

Probab=96.06  E-value=0.0037  Score=45.73  Aligned_cols=50  Identities=30%  Similarity=0.525  Sum_probs=45.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      |.+|...|.++-. .+.++..++.++|..+|+...||+..|+.++..|.+-
T Consensus        23 m~~Y~~~~e~~~~-~g~ql~~~~pq~le~lg~rrig~qeli~~av~~L~~l   72 (638)
T KOG1738|consen   23 MQSYLAIFEDALI-PGRQLLRLKPQSLETLGVRRIGHQELILEAVEQLWAL   72 (638)
T ss_pred             hhHHHHHHHHhhc-ccccccccChHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            5789999999988 7999999999999999999999999999988887653

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A

Probab=94.78  E-value=0.12  Score=26.56  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=32.4

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQ   46 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~   46 (62)
                      ....+.++||.|++++...+.++|.++ ||. +-.-++|..+++
T Consensus        17 ~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig-~~~a~~i~~~~~   59 (60)
T PF14520_consen   17 RAEKLYEAGIKTLEDLANADPEELAEIPGIG-EKTAEKIIEAAR   59 (60)
T ss_dssp             HHHHHHHTTCSSHHHHHTSHHHHHHTSTTSS-HHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHcCCHHHHhcCCCCC-HHHHHHHHHHHh
Confidence            346677889999999999999999987 664 555666665543

...

>KOG1899|consensus

Probab=94.62  E-value=0.035  Score=41.32  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=45.3

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |.||++.|.++-+ +..-+..||-.||..|-|+..=|--.|-.+|+-|+
T Consensus       637 LPQYKdqF~E~rV-DgrmL~ylTvnDll~lkVvs~lHhaSlkraIqvLr  684 (861)
T KOG1899|consen  637 LPQYKDQFAENRV-DGRMLHYLTVNDLLELKVVSALHHASLKRAIQVLR  684 (861)
T ss_pred             ChhhHHHHhhhcc-chhhHhhhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999 79999999999999999999999999999999886

>KOG1899|consensus

Probab=93.94  E-value=0.048  Score=40.65  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=40.3

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      .+|....... +.+...+++++.+|++ ++||..|=||||+.-+++.|..+..+
T Consensus       565 ~qY~n~~r~w-v~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~~keee  617 (861)
T KOG1899|consen  565 GQYMNEVRRW-VRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIEEKEEE  617 (861)
T ss_pred             HHHHHHHHHH-HhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhcccccc
Confidence            4565544433 3355679999999998 89999999999999999999765543

>PRK07758 hypothetical protein; Provisional

Probab=92.57  E-value=0.3  Score=28.14  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=32.9

Q ss_pred             HHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          6 DNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         6 ~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      ..+.++||.+++++..++++||.++  ...|.     +++++|++.+.+.+
T Consensus        48 N~Lk~AGI~TL~dLv~~te~ELl~i--knlGk-----KSL~EIkekL~E~G   91 (95)
T PRK07758         48 RALEHHGIHTVEELSKYSEKEILKL--HGMGP-----ASLPKLRKALEESG   91 (95)
T ss_pred             HHHHHcCCCcHHHHHcCCHHHHHHc--cCCCH-----HHHHHHHHHHHHcC
Confidence            4567899999999999999998753  33343     47777777777543

>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication

Probab=92.42  E-value=0.67  Score=22.48  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHH
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMN   43 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~   43 (62)
                      ...+..+||.+++.+...+.++|..+ |++ ..-..+|..
T Consensus         6 ~~~L~~~G~~s~e~la~~~~~eL~~i~g~~-~e~a~~ii~   44 (50)
T TIGR01954         6 AQLLVEEGFTTVEDLAYVPIDELLSIEGFD-EETAKELIN   44 (50)
T ss_pred             HHHHHHcCCCCHHHHHccCHHHHhcCCCCC-HHHHHHHHH
Confidence            46788999999999999999999986 544 444444443

NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.

>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins

Probab=91.76  E-value=0.14  Score=24.65  Aligned_cols=19  Identities=21%  Similarity=0.427  Sum_probs=17.4

Q ss_pred             cHHHHHcCCHHHHhcCCCC
Q psy10378         15 SMEAVVRLTVAELNALGIT   33 (62)
Q Consensus        15 ~~~~~~~lt~~dL~~lGIt   33 (62)
                      +...+..|++..|.++|++
T Consensus        16 tr~~L~~Lsd~~L~DIGl~   34 (40)
T PF06568_consen   16 TRRELAELSDRQLADIGLT   34 (40)
T ss_pred             HHHHHccCCHHHHHHcCCC
Confidence            5678999999999999998

In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.

>PF14229 DUF4332: Domain of unknown function (DUF4332)

Probab=87.63  E-value=0.61  Score=27.42  Aligned_cols=28  Identities=18%  Similarity=0.445  Sum_probs=25.1

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELNA   29 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~   29 (62)
                      .+|+..+..+||+|++++...+.++|..
T Consensus        63 ~~~a~LL~~AGv~Tv~~LA~~~p~~L~~   90 (122)
T PF14229_consen   63 PQYAELLEHAGVDTVEELAQRNPQNLHQ   90 (122)
T ss_pred             HHHHHHHHHhCcCcHHHHHhCCHHHHHH
Confidence            4799999999999999999999998864

>KOG3835|consensus

Probab=87.05  E-value=0.88  Score=32.37  Aligned_cols=49  Identities=14%  Similarity=0.299  Sum_probs=40.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcC----CC-CCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNAL----GI-TLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~l----GI-t~~gh~kkIl~~i~~l~   49 (62)
                      |-+|.+.|.+.|-+++.++|.--+++..+|    |. ++|=|.+|+.+++.++-
T Consensus        23 LlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALrew~   76 (495)
T KOG3835|consen   23 LLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALREWS   76 (495)
T ss_pred             HHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHHHh
Confidence            357999999999999999998888876553    43 45889999999988874

>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals

Probab=86.73  E-value=3.1  Score=21.95  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcC
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNAL   30 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~l   30 (62)
                      ...+..+|+.++.++..++.+||..+
T Consensus        24 ~n~L~~~~I~tv~dL~~~s~~~L~~i   49 (66)
T PF03118_consen   24 YNCLKRAGIHTVGDLVKYSEEDLLKI   49 (66)
T ss_dssp             HHHHHCTT--BHHHHHCS-HHHHHTS
T ss_pred             HHHHHHhCCcCHHHHHhCCHHHHHhC
Confidence            35678899999999999999999874

The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....

>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

Probab=86.05  E-value=1.8  Score=27.72  Aligned_cols=41  Identities=27%  Similarity=0.498  Sum_probs=31.8

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc----CCCCCchHHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA----LGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~----lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |...|.  || +.+.++.++++|+.+    .||  .-||.||-..|..-+
T Consensus        57 freaF~--~F-d~~kVA~~~~~dverLl~d~gI--IR~r~KI~A~i~NA~  101 (188)
T COG2818          57 FREAFH--GF-DPEKVAAMTEEDVERLLADAGI--IRNRGKIKATINNAR  101 (188)
T ss_pred             HHHHHh--cC-CHHHHHcCCHHHHHHHHhCcch--hhhHHHHHHHHHHHH
Confidence            555554  57 799999999999875    466  589999998777665

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=83.95  E-value=3.6  Score=27.75  Aligned_cols=44  Identities=18%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l   48 (62)
                      -...+.++||.|++.+...+..+|.+ .|++ ..--.+|++++..+
T Consensus        13 ~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls-~~~~~~i~~~~~~~   57 (313)
T TIGR02238        13 DIKKLKSAGICTVNGVIMTTRRALCKIKGLS-EAKVDKIKEAASKI   57 (313)
T ss_pred             HHHHHHHcCCCcHHHHHhCCHHHHHHhcCCC-HHHHHHHHHHHHhh
Confidence            35688999999999999999999976 6776 67777888766665

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=82.76  E-value=3.6  Score=27.73  Aligned_cols=44  Identities=18%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l   48 (62)
                      ....+.++||.|++.+...+..||.+ .||+ ....++++..+..+
T Consensus        13 ~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls-~~~~~~~~~~~~~~   57 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYAPKKQLLEIKGIS-EAKADKILAEAAKL   57 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhCCHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence            46789999999999999999999987 5665 55556677666544

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PTZ00035 Rad51 protein; Provisional

Probab=82.75  E-value=4.2  Score=27.67  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=34.9

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l   48 (62)
                      -...+.++||.|++.+...+..+|.+ .||+ ..--.+|+.....+
T Consensus        35 ~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis-~~~~~~i~~~~~~~   79 (337)
T PTZ00035         35 DIKKLKEAGICTVESVAYATKKDLCNIKGIS-EAKVEKIKEAASKL   79 (337)
T ss_pred             HHHHHHHcCCCcHHHHHhCCHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence            35678999999999999999999976 6776 55666777665554

>COG5457 Uncharacterized conserved small protein [Function unknown]

Probab=82.41  E-value=0.85  Score=24.37  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=15.7

Q ss_pred             HHHHHcCCHHHHhcCCCC
Q psy10378         16 MEAVVRLTVAELNALGIT   33 (62)
Q Consensus        16 ~~~~~~lt~~dL~~lGIt   33 (62)
                      --.+..|++..|.++||+
T Consensus        32 r~eL~~lsd~~L~DiGis   49 (63)
T COG5457          32 RRELLRLSDHLLSDIGIS   49 (63)
T ss_pred             HHHHHHHhHHHHHHcCCC
Confidence            346789999999999999

>KOG3678|consensus

Probab=81.95  E-value=2.6  Score=31.25  Aligned_cols=48  Identities=21%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      +.+|.=....+|+ +-..+..+|++-+. +.||+++=||-||+.+....+
T Consensus       551 ls~YTY~mlt~Gv-nRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~  599 (832)
T KOG3678|consen  551 LSVYTYQMLTNGV-NRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAK  599 (832)
T ss_pred             HHHHhHHHhhccc-cHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHhhc
Confidence            3567777888998 68888899998876 789999999999998766543

>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3

Probab=80.25  E-value=4  Score=25.81  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCC--chHHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNALGITL--VGHQKKIMNSIQAMR   49 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~--~gh~kkIl~~i~~l~   49 (62)
                      |...|.  || +.+.++.++++|+.++-...  .-|++||-..+..-+
T Consensus        51 ~r~aF~--~F-d~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~   95 (179)
T PF03352_consen   51 FREAFA--GF-DPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNAR   95 (179)
T ss_dssp             HHHHTG--GG-HHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHH
T ss_pred             HHHHHH--CC-CHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence            445554  57 78999999999999886553  459999997766654

2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	62
3h8m_A	90	Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7		3e-13
1ucv_A	81	Sterile Alpha Motif (Sam) Domain Of Ephrin Type-A R		2e-12
1b0x_A	94	The Crystal Structure Of An Eph Receptor Sam Domain		3e-10
2eao_A	99	Solution Structure Of The C-Terminal Sam-Domain Of		8e-10
1sgg_A	75	The Solution Structure Of Sam Domain From The Recep		5e-09
3hil_A	82	Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1		3e-08
1b4f_A	82	Oligomeric Structure Of The Human Ephb2 Receptor Sa		5e-08
2qkq_A	83	Structure Of The Sam Domain Of Human Ephrin Type-b		1e-07
3kka_C	86	Co-Crystal Structure Of The Sam Domains Of Epha1 An		1e-04
2kso_A	82	Epha2:ship2 Sam:sam Complex Length = 82		2e-04
2e8n_A	88	Solution Structure Of The C-Terminal Sam-Domain Of		2e-04
3bs5_B	80	Crystal Structure Of Hcnk2-SamDHYP-Sam Complex Leng		7e-04
2ean_A	83	Solution Structure Of The N-Terminal Sam-Domain Of		8e-04

>pdb|3H8M|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7) Length = 90

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 37 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 88

>pdb|1UCV|A Chain A, Sterile Alpha Motif (Sam) Domain Of Ephrin Type-A Receptor 8 Length = 81

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
          M RY D+F  GG SS+  V+R+   ++ ALGITL+GHQKKI+ SIQ MR QL++    G
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77

>pdb|1B0X|A Chain A, The Crystal Structure Of An Eph Receptor Sam Domain Reveals A Mechanism For Modular Dimerization Length = 94

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY DNF   G +++EAVV ++  +L  +GIT + HQ KI++S+QAMRTQ+
Sbjct: 38 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQM 89

>pdb|2EAO|A Chain A, Solution Structure Of The C-Terminal Sam-Domain Of Mouse Ephrin Type-B Receptor 1 Precursor (Ec 2.7.1.112) Length = 99

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y D+F   G +S++ V ++T  +L  +GITL GHQKKI+NSI +MR Q+S
Sbjct: 34 MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQIS 86

>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor Tyrosine Kinase Ephb2, Nmr, 10 Structures Length = 75

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M++Y ++F   G ++ + V ++TV ++  +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 22 MSQYKESFASAGFTTFDIVSQMTVEDILRVGVTLAGHQKKILNSIQVMRAQMN 74

>pdb|3HIL|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 1 (Epha1) Length = 82

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          M RY+ +F   G+ +ME V+ LT  +L  +GITL GHQK+I+ SIQ  
Sbjct: 35 MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82

>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam Domain Length = 82

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y ++F   G +S + V ++ + ++  +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 23 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMN 75

>pdb|2QKQ|A Chain A, Structure Of The Sam Domain Of Human Ephrin Type-b Receptor 4 Length = 83

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          M RY ++F   G  S E V +++  +L  +G+TL GHQKKI+ S+Q M++Q
Sbjct: 27 MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQ 77

>pdb|3KKA|C Chain C, Co-Crystal Structure Of The Sam Domains Of Epha1 And Epha2 Length = 86

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++ 
Sbjct: 33 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 86

>pdb|2KSO|A Chain A, Epha2:ship2 Sam:sam Complex Length = 82

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++ 
Sbjct: 28 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 81

>pdb|2E8N|A Chain A, Solution Structure Of The C-Terminal Sam-Domain Of Ephaa2: Ephrin Type-A Receptor 2 Precursor (Ec 2.7.10.1) Length = 88

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++
Sbjct: 24 MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVN 76

>pdb|3BS5|B Chain B, Crystal Structure Of Hcnk2-SamDHYP-Sam Complex Length = 80

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          + +Y+ NFER  IS  + ++R+T  EL  LG++ +GHQ+ I+ ++  +
Sbjct: 23 LQQYIKNFEREKISG-DQLLRITHQELEDLGVSRIGHQELILEAVDLL 69

>pdb|2EAN|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of Human Kiaa0902 Protein (Connector Enhancer Of Kinase Suppressor Of Ras 2) Length = 83

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSI 45
          + +Y+ NFER  IS  + ++R+T  EL  LG++ +GHQ+ I+ ++
Sbjct: 27 LQQYIKNFEREKISG-DQLLRITHQELEDLGVSRIGHQELILEAV 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	62
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	3e-20
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	1e-19
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	1e-19
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	2e-19
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	3e-19
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	4e-19
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	2e-18
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	2e-18
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	2e-18
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	3e-18
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	5e-18
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	8e-18
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	3e-17
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	7e-17
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	1e-16
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	5e-05
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	8e-15
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	1e-14
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	3e-14
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	3e-13
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	3e-04
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	5e-13
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	1e-11
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	2e-11
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	9e-11
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	2e-09
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	2e-09
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	3e-09
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	3e-09
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	9e-08
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	1e-07
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	1e-07
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	8e-07
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	1e-06
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	2e-06
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	4e-06
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	6e-06
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	3e-05
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	6e-05
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	8e-04

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 75.3 bits (185), Expect = 3e-20
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
          +  Y       G S++  V  L+   L   GIT   H +K++++ +  +         G
Sbjct: 35 LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAMSG 93

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 74.1 bits (182), Expect = 1e-19
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57
          M +Y D+F   G +S++ V ++T  +L  +GITL GHQKKI+NSI +MR Q+S + +
Sbjct: 34 MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPT 90

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81

 Score = 73.3 bits (180), Expect = 1e-19
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
          M RY D+F  GG SS+  V+R+   ++ ALGITL+GHQKKI+ SIQ MR QL++    G
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100

 Score = 73.4 bits (180), Expect = 2e-19
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          + +Y D F R G+++  A   L   EL  LGI+  GH+K+I+  +Q    + S
Sbjct: 38 LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGS 90

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} Length = 83

 Score = 72.1 bits (177), Expect = 3e-19
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M RY ++F   G  S E V +++  +L  +G+TL GHQKKI+ S+Q M++Q  
Sbjct: 27 MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAK 79

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} Length = 90

 Score = 72.2 bits (177), Expect = 4e-19
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          M RY DNF   G +S+E+V R+T+ ++ +LGITLVGHQKKIM+SIQ MR Q+
Sbjct: 37 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQM 88

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82

 Score = 70.6 bits (173), Expect = 2e-18
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y ++F   G +S + V ++ + ++  +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 23 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMN 75

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86

 Score = 70.3 bits (172), Expect = 2e-18
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++ 
Sbjct: 33 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 86

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94

 Score = 70.3 bits (172), Expect = 2e-18
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M RY DNF   G +++EAVV ++  +L  +GIT + HQ KI++S+QAMRTQ+ 
Sbjct: 38 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQ 90

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82

 Score = 69.8 bits (171), Expect = 3e-18
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++ 
Sbjct: 28 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT 81

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.5 bits (170), Expect = 5e-18
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          M +Y ++F   G +++E VV++T  ++  +G+ L GHQK+I  S+  ++ Q++ 
Sbjct: 24 MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNT 77

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 69.2 bits (169), Expect = 8e-18
 Identities = 11/53 (20%), Positives = 31/53 (58%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          + +YL +F   G ++++    +  + L  +GI+  GH+++I+  +Q + +++ 
Sbjct: 27 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQ 79

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A Length = 82

 Score = 67.2 bits (164), Expect = 3e-17
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          M RY+ +F   G+ +ME V+ LT  +L  +GITL GHQK+I+ SIQ  
Sbjct: 35 MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B Length = 86

 Score = 66.4 bits (162), Expect = 7e-17
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + RY +     G   +E +  +T  +L   G+    H++ +++++Q  +
Sbjct: 38 LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 67.8 bits (165), Expect = 1e-16
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
           +A+Y       G  +++ +  +T  +L  +GIT +GHQKK+M +++ +   
Sbjct: 91  LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 37.3 bits (86), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          +  Y  NF   G   +  + R+T  +L A+G+T  GH+KKI   I  +
Sbjct: 22 LQLYAPNFISAGY-DLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGL 68

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103

 Score = 61.9 bits (150), Expect = 8e-15
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 1  MARYLDNFERGGISSMEAVVR--LTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS 57
          + +Y ++    G  +++ +    +   +L  +GI   GH+++I+ +IQ +         
Sbjct: 34 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHD 92

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2 Length = 78

 Score = 60.6 bits (147), Expect = 1e-14
 Identities = 6/54 (11%), Positives = 24/54 (44%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          +  Y       G  +++ +  +  + L  L I     + +++++ +++ +  S+
Sbjct: 24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPSS 77

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 59.5 bits (144), Expect = 3e-14
 Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MARYLDNFERGGISSMEAVVR--LTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          + +Y ++    G  +++ +    +   +L  +GI   GH+++I+ +IQ + +  S+
Sbjct: 24 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGPSS 79

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148

 Score = 58.6 bits (141), Expect = 3e-13
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQ 46
           +  Y   F   G +SM+ + ++   EL N L I L+GH+K+I+ S+ 
Sbjct: 100 LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148

 Score = 35.1 bits (80), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 1  MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          + +Y ++    G  +++A+    +   +L  +GI   GH+++I+ +IQ +   
Sbjct: 26 LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens} Length = 101

 Score = 56.9 bits (137), Expect = 5e-13
 Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 1  MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y       G   +  +    +   +L  +GI+   H++K++ + +++ 
Sbjct: 41 LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLP 91

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 52.8 bits (127), Expect = 1e-11
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
          + +Y+ NFER  IS  + ++R+T  EL  LG++ +GHQ+ I+ ++  +   L++  S G
Sbjct: 27 LQQYIKNFEREKISG-DQLLRITHQELEDLGVSRIGHQELILEAVDLLC-ALNSGPSSG 83

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A Length = 76

 Score = 52.4 bits (126), Expect = 2e-11
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          +  + D FE   I     +  LT  +   LG+T VGH++ I  +++ +   
Sbjct: 19 LGEHRDRFEDHEIE-GAHLPALTKEDFVELGVTRVGHRENIERALRQLDGS 68

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A Length = 85

 Score = 51.1 bits (122), Expect = 9e-11
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN 55
            +YLD+F +  + + E +  L    L ALG+  +G + KI+   ++ +      
Sbjct: 27 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKRIE 81

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} Length = 74

 Score = 47.3 bits (113), Expect = 2e-09
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          + +Y+  F    IS  E +++L   +L ALG+T    +  +   ++ M+  
Sbjct: 21 LDQYVSEFSAQNIS-GEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMS 70

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens} Length = 80

 Score = 47.1 bits (112), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y+ NFER  IS  + ++R+T  EL  LG++ +GHQ+ I+ ++  + 
Sbjct: 23 LQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLC 70

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} Length = 81

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
          +  Y D F R  I     ++ L   +L  LG+T VGH K+I+  I+ +   
Sbjct: 24 LCEYKDIFTRHDIR-GSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 73

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 47.1 bits (112), Expect = 3e-09
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 4  YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
              FE   +   + +++L    L AL +  +GHQ+ I+  ++ ++   S   +E
Sbjct: 31 QDYPFEDWQLPG-KNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTE 84

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} Length = 74

 Score = 43.2 bits (102), Expect = 9e-08
 Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M  +     +  I  +EA++  +  +L ++ + L G ++KI+ +++  R  + 
Sbjct: 14 MEDFAALLRQEKID-LEALMLCSDLDLRSISVPL-GPREKILGAVRRRRQAME 64

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 43.7 bits (103), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
               L N     I+    +  L  +    LG++ +G +KK+++ IQ +  Q+  +  +
Sbjct: 46  EPVLLKNIRENEIT-GALLPCLDESRFENLGVSSLGERKKLLSYIQRLV-QIHVDTMK 101

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster} Length = 78

 Score = 42.5 bits (100), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
            +Y   F +  I+   A++R+T + L  +G+T    ++ I   I   R +
Sbjct: 22 YTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK 71

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster} Length = 106

 Score = 41.5 bits (97), Expect = 8e-07
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
            +Y   F +  I+   A++R+T + L  +G+T    ++ I   I   R +
Sbjct: 42 YTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK 91

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae} Length = 119

 Score = 41.2 bits (96), Expect = 1e-06
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 3   RYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL 56
           +Y D       +    ++ L    L   G+  +G ++K++ +   +      +L
Sbjct: 63  KYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKERDL 113

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1   MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
           + +Y   F+ G +     +  +TV +L +L +  V H   I  +IQ +R
Sbjct: 104 LPQYKTQFDEGRVDG-RMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLR 151

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A Length = 101

 Score = 39.2 bits (91), Expect = 4e-06
 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y D       +    ++ L    L   G+  +G ++K++ +   + 
Sbjct: 43 LHKYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 88

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A Length = 88

 Score = 38.7 bits (90), Expect = 6e-06
 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y D       +    ++ L    L   G+  +G ++K++ +   + 
Sbjct: 30 LHKYSDALSG---TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 75

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 91

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAEL--NALGITLVGHQKKIMNSIQAMRTQLSA 54
           + Y D F    ++    ++ LT  E       I    H++ I+  ++ +R+  S+
Sbjct: 36 ASLYRDRFLSERVNG-RLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGPSS 90

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 37.3 bits (87), Expect = 6e-05
 Identities = 4/23 (17%), Positives = 10/23 (43%)

Query: 1   MARYLDNFERGGISSMEAVVRLT 23
            A   + F     SS + + +++
Sbjct: 351 TAHCKEIFTGVEYSSCDTIAKIS 373

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A Length = 89

 Score = 33.3 bits (76), Expect = 8e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 2  ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLSANLSE 58
            Y+D+F +  I   +A++RL    L NA+G+ L G   KI+  +++++     +   
Sbjct: 33 QDYVDDFIQQEID-GQALLRLKEKHLVNAMGMKL-GPALKIVAKVESIKEVRDHHHHH 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	62
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	99.84
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	99.82
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	99.82
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	99.81
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	99.81
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	99.8
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	99.8
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	99.8
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	99.79
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	99.78
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	99.78
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	99.78
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	99.76
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	99.75
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	99.74
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	99.74
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	99.74
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	99.73
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	99.68
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	99.68
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.65
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	99.65
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	99.65
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	99.65
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	99.64
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	99.63
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	99.62
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.59
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	99.59
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	99.55
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	99.54
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	99.53
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	99.52
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	99.48
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	99.47
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	99.47
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	99.44
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	99.41
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	99.36
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	99.29
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	99.22
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	99.22
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	99.15
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	99.11
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	98.76
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.71
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.61
1uqv_A	85	STE50 protein; SAM, sterIle alpha motif, helical,	98.19
1dxs_A	80	P53-like transcription factor; P73 SAM-like domain	98.07
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	97.89
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	97.88
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	97.49
3idw_A	72	Actin cytoskeleton-regulatory complex protein SLA;	97.4
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	91.18
1b22_A	114	DNA repair protein RAD51; DNA binding, riken struc	89.89
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	89.0
1u9l_A	70	Transcription elongation protein NUSA; escherichia	87.72
1z3e_B	73	DNA-directed RNA polymerase alpha chain; bacterial	87.4
1coo_A	98	RNA polymerase alpha subunit; transcription regula	85.62
3gfk_B	79	DNA-directed RNA polymerase subunit alpha; protein	84.71
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	82.68
3k4g_A	86	DNA-directed RNA polymerase subunit alpha; bacteri	81.91
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	80.25

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=99.84  E-value=6.2e-21  Score=105.36  Aligned_cols=60  Identities=38%  Similarity=0.662  Sum_probs=54.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF   60 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~~   60 (62)
                      |++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.++++.++++|
T Consensus        23 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~~   82 (82)
T 1b4f_A           23 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQSVEV   82 (82)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccccCCCC
Confidence            689999999999999999999999999999999999999999999999999987665543

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.82  E-value=1.7e-20  Score=103.62  Aligned_cols=59  Identities=53%  Similarity=0.858  Sum_probs=55.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG   59 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~   59 (62)
                      |++|.+.|.++||++++.++.++++||++|||+.+|||+||+.+|+.++.++.+..+++
T Consensus        19 L~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~   77 (81)
T 1ucv_A           19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG   77 (81)
T ss_dssp             CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCS
T ss_pred             CHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHHhhcCCCC
Confidence            68999999999998899999999999999999999999999999999999998766654

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=105.24  Aligned_cols=54  Identities=57%  Similarity=0.886  Sum_probs=51.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |++|.+.|.++||++++.+..++++||++|||+.+|||+||+++|+.|+.+|++
T Consensus        37 L~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~qm~~   90 (90)
T 3h8m_A           37 MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQMLH   90 (90)
T ss_dssp             CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999988999999999999999999999999999999999999863

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=99.81  E-value=2.5e-20  Score=104.34  Aligned_cols=53  Identities=32%  Similarity=0.656  Sum_probs=48.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.+.|..+||++++.+..++++||++|||+.+|||+||+++++.|+.+|.
T Consensus        33 L~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~qm~   85 (86)
T 3kka_C           33 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVN   85 (86)
T ss_dssp             CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            68999999999998899999999999999999999999999999999998875

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=4.9e-20  Score=105.01  Aligned_cols=60  Identities=43%  Similarity=0.667  Sum_probs=55.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCCCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEGF   60 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~~~   60 (62)
                      |++|.++|.++||++++.++.|+++||++|||+.+|||+||+++|+.++.++.+..+.+|
T Consensus        34 L~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~~~~   93 (99)
T 2eao_A           34 MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMA   93 (99)
T ss_dssp             CGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCCCCCSC
T ss_pred             cHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhccCCCCC
Confidence            689999999999988999999999999999999999999999999999999987666544

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=99.80  E-value=7.2e-20  Score=103.52  Aligned_cols=56  Identities=46%  Similarity=0.735  Sum_probs=53.3

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      |++|.+.|.++||++++.++.|+++||++|||+.+|||+||+.+|+.++.++.+.+
T Consensus        38 L~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~~~~~~   93 (94)
T 1b0x_A           38 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH   93 (94)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHhccC
Confidence            68999999999999999999999999999999999999999999999999998643

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=99.80  E-value=4.7e-20  Score=102.25  Aligned_cols=54  Identities=31%  Similarity=0.648  Sum_probs=51.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.++.+
T Consensus        28 L~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~~~~   81 (82)
T 2kso_A           28 MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQVNT   81 (82)
T ss_dssp             CTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHHcc
Confidence            689999999999988999999999999999999999999999999999999863

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=7.9e-20  Score=102.23  Aligned_cols=57  Identities=30%  Similarity=0.559  Sum_probs=53.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS   57 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~   57 (62)
                      |++|.++|.++||++++.++.|+++||++|||+.+|||+||+++|+.++.++.+.+.
T Consensus        24 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~   80 (88)
T 2e8n_A           24 MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNTVGI   80 (88)
T ss_dssp             CGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHhhcccCC
Confidence            789999999999988999999999999999999999999999999999999986654

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.79  E-value=5.4e-20  Score=103.61  Aligned_cols=54  Identities=20%  Similarity=0.542  Sum_probs=52.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |++|.++|.++||++++.++.|+++||++|||+.+|||+||+.+|+.|+.+++.
T Consensus        27 L~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~~~   80 (91)
T 1x40_A           27 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQD   80 (91)
T ss_dssp             CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhcCC
Confidence            789999999999999999999999999999999999999999999999999864

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.78  E-value=1.4e-19  Score=99.51  Aligned_cols=51  Identities=10%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      |++|.++|..+||++++.|..++++||.+|||+.+|||+||+.+++.|+++
T Consensus        24 L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~   74 (78)
T 1v38_A           24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSG   74 (78)
T ss_dssp             CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999999999999999999998754

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=99.78  E-value=3.7e-19  Score=96.25  Aligned_cols=52  Identities=19%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.++|.++||.+++.+.++|.+||.+|||+. ||||||+++|+.++.++.
T Consensus        16 m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~-ghqkkIl~siq~lr~~~~   67 (69)
T 2y9u_A           16 CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHE   67 (69)
T ss_dssp             CGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCCh-hhHHHHHHhHHHHHhccc
Confidence            6899999999999999999999999999999997 999999999999999875

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.1e-19  Score=100.61  Aligned_cols=54  Identities=41%  Similarity=0.713  Sum_probs=47.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |++|.+.|.++||.+++.++.++++||++|||+.+|||+||+++|+.++.++++
T Consensus        27 L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~~~   80 (83)
T 2qkq_A           27 MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKP   80 (83)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC------
T ss_pred             CHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999889999999999999999999999999999999999999874

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=99.76  E-value=6.1e-19  Score=98.73  Aligned_cols=49  Identities=18%  Similarity=0.439  Sum_probs=46.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |++|.+.|.++||++++.|..++++||++|||+.+|||+||+.+|+.||
T Consensus        38 L~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK   86 (86)
T 2k4p_A           38 LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK   86 (86)
T ss_dssp             CGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence            7899999999999999999999999999999999999999999998764

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=99.75  E-value=3.9e-18  Score=93.03  Aligned_cols=55  Identities=16%  Similarity=0.366  Sum_probs=52.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS   57 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~   57 (62)
                      |++|.+.|.++++ +++.+..++++||++|||+ +|||+||+++|+.++.++.+.+.
T Consensus        14 L~~Y~~~F~~~~i-d~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~~~~~~p~~   68 (74)
T 3k1r_B           14 MEDFAALLRQEKI-DLEALMLCSDLDLRSISVP-LGPREKILGAVRRRRQAMERPPA   68 (74)
T ss_dssp             CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHcCc-CHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHHHHhcCCCC
Confidence            6899999999999 7999999999999999999 99999999999999999997654

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.5e-19  Score=103.10  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      |+||+++|.++||++++.|.+|+++||++|||+.+||||||+++++.++.++.+
T Consensus        35 L~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~~~   88 (97)
T 2dl0_A           35 LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGP   88 (97)
T ss_dssp             CGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCCCS
T ss_pred             CHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHcccCc
Confidence            789999999999988999999999999999999999999999999999877653

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=99.74  E-value=8.3e-19  Score=97.39  Aligned_cols=48  Identities=48%  Similarity=0.822  Sum_probs=45.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      |++|.+.|.++||++++.+..++++||++|||+.+||||||+++++.+
T Consensus        35 L~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~l   82 (82)
T 3hil_A           35 MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF   82 (82)
T ss_dssp             CGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHhC
Confidence            789999999999988999999999999999999999999999999864

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=99.74  E-value=8.7e-19  Score=100.33  Aligned_cols=57  Identities=32%  Similarity=0.506  Sum_probs=52.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLS   57 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~   57 (62)
                      |++|.+.|.++||++++.++.++++||++|||+.+|||+||+++|+.++.+....+.
T Consensus        38 L~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p~   94 (100)
T 2kg5_A           38 LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPK   94 (100)
T ss_dssp             CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCCC
T ss_pred             CHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCCC
Confidence            689999999999977999999999999999999999999999999999987765443

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=99.73  E-value=2e-18  Score=96.01  Aligned_cols=52  Identities=19%  Similarity=0.308  Sum_probs=50.2

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.++|.++||.+++.+.+||.+||.+|||+. ||||||+++|+.++.++.
T Consensus        18 m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~-gHqkkIl~siq~lr~~~~   69 (82)
T 2y9t_A           18 CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQLHE   69 (82)
T ss_dssp             CGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCCh-hhHHHHHhhHHHHHHHhc
Confidence            6899999999999999999999999999999997 999999999999999985

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=99.68  E-value=5.8e-18  Score=97.12  Aligned_cols=50  Identities=14%  Similarity=0.352  Sum_probs=47.2

Q ss_pred             CcchHHHHhhcCcCcHHHHH--cCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVV--RLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~--~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.+.|.++||++++.++  .+|++||++|||+.+|||+||+.+|+.|+.
T Consensus        41 L~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~   92 (101)
T 2lmr_A           41 LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPK   92 (101)
T ss_dssp             CGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSS
T ss_pred             CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence            78999999999998899998  999999999999999999999999998764

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=6.6e-18  Score=92.81  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=46.8

Q ss_pred             CcchHHHHhhcCcCcHHHH--HcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~--~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.+.|.++||++++.+  ..|+++||++|||+.+|||+||+.+|+.|+.
T Consensus        24 L~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~   75 (80)
T 2eam_A           24 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPS   75 (80)
T ss_dssp             CGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence            6899999999999888888  7999999999999999999999999998874

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.65  E-value=1.5e-16  Score=96.11  Aligned_cols=52  Identities=27%  Similarity=0.519  Sum_probs=49.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL   52 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~   52 (62)
                      |++|.+.|.++||++++.+..+|++||++|||+.+|||+||+.+|+.+++-.
T Consensus        91 L~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~~  142 (149)
T 3sei_A           91 LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELR  142 (149)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999889999999999999999999999999999999987643

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=99.65  E-value=6e-17  Score=92.78  Aligned_cols=50  Identities=20%  Similarity=0.441  Sum_probs=47.1

Q ss_pred             CcchHHHHhhcCcCcHHHH--HcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAV--VRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~--~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.++|.++||++.+.+  ..||++||++|||+.+|||+||+.+|+.++.
T Consensus        34 L~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~   85 (103)
T 2ke7_A           34 LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK   85 (103)
T ss_dssp             CTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence            6899999999999888888  7999999999999999999999999999873

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=99.65  E-value=2.9e-16  Score=85.82  Aligned_cols=54  Identities=31%  Similarity=0.565  Sum_probs=50.3

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      |++|.+.|.++++ +++.++.++.+||++|||+.+|||++|+.+|+.|+......
T Consensus        23 l~~Y~~~F~~~~i-~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~l   76 (80)
T 3bs5_B           23 LQQYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGL   76 (80)
T ss_dssp             GGGGHHHHHHHTC-CHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCC-CHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence            5799999999999 79999999999999999999999999999999999876644

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=86.96  Aligned_cols=54  Identities=33%  Similarity=0.604  Sum_probs=50.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      |++|++.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.....+
T Consensus        27 l~~Y~~~F~~~~I-~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~~l   80 (83)
T 2ean_A           27 LQQYIKNFEREKI-SGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGP   80 (83)
T ss_dssp             GTTTHHHHHHHTC-CHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCC-CHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            5799999999999 69999999999999999999999999999999999887654

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=99.64  E-value=3.7e-16  Score=84.34  Aligned_cols=52  Identities=25%  Similarity=0.447  Sum_probs=49.1

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.+.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus        21 l~~y~~~F~~~~i-~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~e   72 (74)
T 2gle_A           21 LDQYVSEFSAQNI-SGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLE   72 (74)
T ss_dssp             THHHHHHHTTTTC-CHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred             CHHHHHHHHHcCC-CHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            5799999999999 799999999999999999999999999999999998764

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=99.63  E-value=3.8e-16  Score=85.92  Aligned_cols=52  Identities=31%  Similarity=0.523  Sum_probs=47.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.+.|.++++ +...++.+|++||++|||+.+|||+||+.+|+.++....
T Consensus        24 l~~Y~~~F~~~~i-dg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~~~   75 (81)
T 3bq7_A           24 LCEYKDIFTRHDI-RGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSSR   75 (81)
T ss_dssp             CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHcCC-CHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            6899999999999 788899999999999999999999999999999987654

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=99.62  E-value=1.6e-16  Score=86.48  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=45.3

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|.+.|.++++ +.+.++.+|++||++|||+.+|||+||+.+|+.++....
T Consensus        19 l~~Y~~~F~~~~i-dg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~~~   70 (76)
T 2f3n_A           19 LGEHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGSRR   70 (76)
T ss_dssp             CGGGHHHHHHTTC-CGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC-----
T ss_pred             CHHHHHHHHHcCC-CHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHHHh
Confidence            6899999999999 688999999999999999999999999999999987665

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.59  E-value=6.5e-16  Score=93.24  Aligned_cols=49  Identities=33%  Similarity=0.581  Sum_probs=46.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.++|.++||+ ++.+..+|.+||++|||+.+|||+||+.+|+.++.
T Consensus        22 L~~Y~~~F~~~g~d-~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~   70 (149)
T 3sei_A           22 LQLYAPNFISAGYD-LPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSI   70 (149)
T ss_dssp             CGGGHHHHHHTTCC-HHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHcCCC-HHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            68999999999995 99999999999999999999999999999998864

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=99.59  E-value=2.3e-15  Score=81.92  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=49.2

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      +++|.+.|.++++ +.+.++.++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus        22 l~~y~~~F~~~~I-~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~~~~   73 (78)
T 3bs7_A           22 YTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD   73 (78)
T ss_dssp             GGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            4789999999999 789999999999999999999999999999999998764

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=99.55  E-value=9.6e-16  Score=92.18  Aligned_cols=51  Identities=22%  Similarity=0.449  Sum_probs=47.6

Q ss_pred             CcchHHHHhhcCcCcHHHHH--cCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVV--RLTVAELNALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~--~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      |++|.+.|.++||++.+.+.  .+|++||++|||+.+|||+||+.+|+.++..
T Consensus        26 L~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~   78 (148)
T 2kiv_A           26 LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM   78 (148)
T ss_dssp             CTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence            68999999999998888888  9999999999999999999999999998743

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=99.54  E-value=4.7e-15  Score=89.14  Aligned_cols=47  Identities=34%  Similarity=0.624  Sum_probs=44.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQA   47 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~   47 (62)
                      |++|.++|.++||++++.+..++.+|| ++|||+.+|||+||+.++++
T Consensus       100 L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~  147 (148)
T 2kiv_A          100 LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD  147 (148)
T ss_dssp             CCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence            689999999999999999999999997 89999999999999999863

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.53  E-value=3.6e-15  Score=84.03  Aligned_cols=53  Identities=23%  Similarity=0.385  Sum_probs=48.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      |.+|  .|.++++ +.+.++.|+.+||++|||+.+|||++|+.+|+.|+.++..+.
T Consensus        30 l~~Y--~F~~~~I-~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~   82 (91)
T 1wwv_A           30 LQDY--PFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQ   82 (91)
T ss_dssp             HHTS--CHHHHCC-CHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             cccc--cHHhcCc-cHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccc
Confidence            3578  7999999 699999999999999999999999999999999999886544

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=99.52  E-value=1.5e-14  Score=83.20  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=48.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      +++|.+.|.++++ +.+.+..++.+||++|||+.+|||++|+.+|+.|+.+..
T Consensus        42 l~~Y~~~F~~~~I-~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~~~   93 (106)
T 3bs5_A           42 YTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD   93 (106)
T ss_dssp             GGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCc-cHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999 689999999999999999999999999999999987653

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=99.48  E-value=6.7e-14  Score=78.58  Aligned_cols=50  Identities=14%  Similarity=0.286  Sum_probs=45.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |.+|.++|...   +++.+..||++||+++||+..|||+||+.+|+.++....
T Consensus        30 LhKY~~~F~~~---~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~~~   79 (88)
T 2d3d_A           30 LHKYSDALSGT---PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE   79 (88)
T ss_dssp             CGGGHHHHTTS---CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhcC---CHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHh
Confidence            68999999864   789999999999999999999999999999999997543

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=99.47  E-value=2.4e-14  Score=79.79  Aligned_cols=53  Identities=25%  Similarity=0.407  Sum_probs=47.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      ++||.+.|.+++++.++.+..+..++|++|||+++|||-||+.++..|+.+..
T Consensus        27 c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~   79 (85)
T 1ow5_A           27 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR   79 (85)
T ss_dssp             CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred             ChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence            47999999999997779999999999999999999999999999999987665

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.7e-14  Score=81.54  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             Ccc--hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          1 MAR--YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         1 L~~--Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      |++  |++.|.++++ +.+.++.++.+||++|||+..|||++|+.+|+.|+....++
T Consensus        44 l~~~~y~~~F~~~~I-~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~~~~~   99 (103)
T 2e8o_A           44 FEEPVLLKNIRENEI-TGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDT   99 (103)
T ss_dssp             CCCHHHHHHHHHTTC-CTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTCS
T ss_pred             CChHHHHHHHHHcCC-CHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhHHHH
Confidence            456  9999999999 79999999999999999999999999999999998765543

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.44  E-value=1.4e-13  Score=77.03  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=46.8

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHhc--CCCCCchHHHHHHHHHHHHHHHh
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELNA--LGITLVGHQKKIMNSIQAMRTQL   52 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~--lGIt~~gh~kkIl~~i~~l~~~~   52 (62)
                      ++|++.|.++.+ +++.++.||++||++  |||+..|||++|+.+|+.|+...
T Consensus        37 ~~Y~~~F~~~~I-dG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~   88 (91)
T 1v85_A           37 SLYRDRFLSERV-NGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP   88 (91)
T ss_dssp             HHHHHHHHHTTC-CHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCC-CHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            789999999988 899999999999998  99999999999999999998643

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=99.41  E-value=3.5e-13  Score=77.22  Aligned_cols=50  Identities=14%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |.+|.++|...   +++.+..||++||.++||+..|||+||+.+|+.++....
T Consensus        43 LhKY~~~F~~~---~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~~k~   92 (101)
T 2es6_A           43 LHKYSDALSGT---PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE   92 (101)
T ss_dssp             CCCTHHHHTTS---CHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHccC---CHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHHHHH
Confidence            67999999774   678999999999999999999999999999999997644

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.36  E-value=9.7e-13  Score=77.29  Aligned_cols=50  Identities=14%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |.+|++.|..  . +++.|+.++++||+++||+..|||+||+.+|+.+++...
T Consensus        61 L~KY~~~F~~--~-~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~k~  110 (119)
T 2b6g_A           61 LHKYSDALSG--T-PWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKE  110 (119)
T ss_dssp             CHHHHHHHTT--S-CHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHcc--C-CHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhhhc
Confidence            6799999954  4 689999999999999999999999999999999997653

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=99.29  E-value=5.3e-12  Score=70.63  Aligned_cols=51  Identities=27%  Similarity=0.498  Sum_probs=44.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      +++|.+.|.++.+ +++.++.++.+|| ++||| +.|||+||+++|+.++..+.
T Consensus        32 l~~y~~~F~~~~I-dG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~~~~   83 (89)
T 1kw4_A           32 CQDYVDDFIQQEI-DGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKEVRD   83 (89)
T ss_dssp             CGGGHHHHHHTTC-CHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHhCc-cHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999 7999999999999 89999 69999999999999987654

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=99.22  E-value=1.1e-11  Score=76.62  Aligned_cols=49  Identities=20%  Similarity=0.433  Sum_probs=43.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |.+|.++|...   +++.+..||++||.++||| .|||+||+.+|+.++.+..
T Consensus        19 LhKY~~~F~~~---~~e~~~~LTdedL~~~GVT-~GARrKIL~aIq~Lrer~~   67 (173)
T 1oxj_A           19 LHKYIELFKNM---TYEEMLLITEDFLQSVGVT-KGASHKLALCIDKLKERAN   67 (173)
T ss_dssp             CGGGGGGGTTC---CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHccC---CHHHHHhcCHHHHHHCCCc-hHHHHHHHHHHHHHHHHhh
Confidence            67999999875   4668999999999999999 5999999999999997664

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.22  E-value=1e-11  Score=70.56  Aligned_cols=50  Identities=12%  Similarity=0.308  Sum_probs=45.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhc--CCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNA--LGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~--lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      +++|++.| ++ + +.+.++.++++||++  |||...|||+||+.+|+.|+.+-.
T Consensus        34 l~~Y~~~F-~~-I-dG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~   85 (97)
T 2d8c_A           34 MPEYCEPL-EH-F-TGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH   85 (97)
T ss_dssp             CTTTTTTT-TT-C-CHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHH-Hc-C-CCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhH
Confidence            57899999 66 6 899999999999999  999999999999999999986654

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=99.15  E-value=4.3e-11  Score=77.99  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=46.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      |++|.+.|.++++ +...+..+|++||+ +|||+.++|||||+.+|+.++..
T Consensus        32 L~~Y~~~f~~n~~-dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~   82 (265)
T 3tad_C           32 LGSYLSSGKHWII-SGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSE   82 (265)
T ss_dssp             CCTTHHHHTTTCS-CSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCC-chHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            6799999999999 78999999999996 99999999999999999999864

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=99.11  E-value=1e-10  Score=76.20  Aligned_cols=49  Identities=27%  Similarity=0.433  Sum_probs=46.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |.||.+.|.++++ +...+..+|.+||.+|||+..+||++|+.+|+.|+.
T Consensus       104 L~QY~~~F~~~~i-Dg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~  152 (265)
T 3tad_C          104 LPQYKTQFDEGRV-DGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRI  152 (265)
T ss_dssp             CGGGHHHHHHHTC-CHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCC-CHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhh
Confidence            6899999999999 599999999999999999999999999999999874

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=98.76  E-value=1.4e-08  Score=56.66  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=42.9

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHHHH
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      ++|.+.|.++.+ +++.++.|+.+|| +.|||. .|++.||..+|..++..
T Consensus        34 ~~y~~~F~~~eI-DG~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~   82 (89)
T 1pk1_B           34 AVHGDLFRKHEI-DGKALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGR   82 (89)
T ss_dssp             GGGHHHHHHTTC-CHHHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCc-ChHHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHcc
Confidence            589999999999 7999999999998 569996 99999999999999754

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.71  E-value=2.4e-08  Score=66.74  Aligned_cols=51  Identities=24%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             Ccc-hHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHHHHh
Q psy10378          1 MAR-YLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMRTQL   52 (62)
Q Consensus         1 L~~-Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~~~~   52 (62)
                      |++ |...|.++.. +...++.+|++||. +|||+.|.|||||+.+|+.+.+-.
T Consensus        54 mp~~Yv~~~r~nvk-SG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~  106 (334)
T 3tac_B           54 MPAWYVAACRANVK-SGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLT  106 (334)
T ss_dssp             CCHHHHHHHHHHCC-SHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHcc-chHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Confidence            455 9999999999 79999999999996 999999999999999999997543

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.61  E-value=8.8e-08  Score=64.07  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=45.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHH-hcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAEL-NALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL-~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |.||.+.|..+++ +...+-.++.+|| ..|||+...|+++|+.+|+-|+
T Consensus       175 LpQY~~~F~~~~V-DgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr  223 (334)
T 3tac_B          175 LPQYRSYFMECLV-DARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLK  223 (334)
T ss_dssp             CGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHhcCc-chhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence            6899999999999 7999999999999 7999999999999999999986

>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A

Probab=98.19  E-value=1.1e-06  Score=48.81  Aligned_cols=45  Identities=16%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      .++.|..|++ +.+.+..++.+||++|+|...|+|.++..+|+.||
T Consensus        33 ~~~~f~~ndI-tG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr   77 (85)
T 1uqv_A           33 LCQRLRENDI-VGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMR   77 (85)
T ss_dssp             HHHHHHHSCC-CGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-chhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            4789999999 89999999999999999999999999999999996

>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A

Probab=98.07  E-value=7.7e-06  Score=44.86  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=44.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      ++.|.+.|.+.|+.++-++-.++-+||..|.|. -.||.||-+++.+.+.
T Consensus        18 c~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIp-e~~R~kIWk~l~e~~q   66 (80)
T 1dxs_A           18 CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDLKQ   66 (80)
T ss_dssp             CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC--
T ss_pred             chHHHHHHHHcCcccchhhccCCHHHHHhCCCC-HHHHHHHHhhHHHhcc
Confidence            367999999999999999999999999999998 8999999999999873

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=97.89  E-value=4.9e-06  Score=50.37  Aligned_cols=45  Identities=24%  Similarity=0.454  Sum_probs=39.1

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHH--H--hcCCCCCchHHHHHH-HHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAE--L--NALGITLVGHQKKIM-NSIQ   46 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~d--L--~~lGIt~~gh~kkIl-~~i~   46 (62)
                      |+||.+.|..+.+ +...+..|+..+  +  .+|||+.++||+||- +|+.
T Consensus        96 LpqY~~~Fr~~~I-~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~lkald  145 (150)
T 2k60_A           96 LPQYEETFRKLQL-SGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALD  145 (150)
T ss_dssp             CTTHHHHHHHHCC-STTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCC-CHHHHHhhccccHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            6899999999999 799999998875  4  899999999999986 4544

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=97.88  E-value=2.5e-06  Score=51.63  Aligned_cols=41  Identities=24%  Similarity=0.461  Sum_probs=37.4

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHH----HhcCCCCCchHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAE----LNALGITLVGHQKKIM   42 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~d----L~~lGIt~~gh~kkIl   42 (62)
                      |+||.+.|.++.+ +...+..|+..+    +.+|||+.++||+||.
T Consensus        96 LpqY~~~Fr~~~I-dG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~  140 (150)
T 2l5y_A           96 LPQYEKNFRDNNV-KGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ  140 (150)
T ss_dssp             CTTSHHHHHHHHC-SSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred             cHHHHHHHHHcCC-CHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence            6899999999999 799999999866    4699999999999998

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=0.00011  Score=40.65  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             Ccc-hHHHHhhcCcCcHHHHHcCCHHHHh-cCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MAR-YLDNFERGGISSMEAVVRLTVAELN-ALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~-Y~~~f~~~g~~~~~~~~~lt~~dL~-~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |++ |.+.|.++.+ +...++.|++++|. ++|++ .=+.+||+..|..+|
T Consensus        32 L~e~vv~~F~~e~I-DG~lL~~L~ee~L~edf~ls-~Lq~kKi~~fI~GWr   80 (84)
T 2dkz_A           32 LSEDVISFFVTEKI-DGNLLVQLTEEILSEDFKLS-KLQVKKIMQFINGSG   80 (84)
T ss_dssp             CCHHHHHHHHTTTC-CHHHHHHCCHHHHHHTSCCC-HHHHHHHHHHHHCCC
T ss_pred             CcHHHHHHHHHHcc-chHHHHhCCHHHHHhhcCCC-HHHHHHHHHHHhcCC
Confidence            454 5799999999 79999999999995 69996 889999999886543

>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00016  Score=38.92  Aligned_cols=46  Identities=22%  Similarity=0.411  Sum_probs=41.3

Q ss_pred             cchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          2 ARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         2 ~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      ++|..+|.++-+ +-+.+.+++.+=|.+|||+ .|+.=+|++.+....
T Consensus        20 ~rYA~~F~~~ri-~e~mL~Dl~~~~Lr~LGi~-eGDIIrVmk~l~~k~   65 (72)
T 3idw_A           20 QRYTINFDREQL-TEDMMPDINNSMLRTLGLR-EGDIVRVMKHLDKKF   65 (72)
T ss_dssp             HHHHHHHHHTTC-CGGGGGGCCHHHHHHTTCC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-CHHHHhhCCHHHHHHcCCc-hhhHHHHHHHHHHHh
Confidence            479999999999 6889999999999999998 899999999877653

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=91.18  E-value=0.89  Score=23.59  Aligned_cols=40  Identities=13%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHH
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSI   45 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i   45 (62)
                      ...+.++||.|++.+...+.++|.+ .||+ ..--.+|+.+.
T Consensus        20 ~~kL~e~Gi~TvedlA~~~~~eL~~i~gis-e~kA~~ii~aA   60 (70)
T 1wcn_A           20 AFKLAARGVCTLEDLAEQGIDDLADIEGLT-DEKAGALIMAA   60 (70)
T ss_dssp             HHHHHTTTCCSHHHHHTSCHHHHHTSSSCC-HHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHcCCHHHHHHccCCC-HHHHHHHHHHH
Confidence            3568899999999999999999987 4665 44444555443

>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1

Probab=89.89  E-value=0.34  Score=27.59  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~~l   48 (62)
                      ....+.++||.|++.+...+..+|.+ -||+ ..--.||+.+...+
T Consensus        37 ~i~kL~eAG~~Tve~va~a~~~eL~~i~GIs-e~ka~kIi~aA~kl   81 (114)
T 1b22_A           37 DVKKLEEAGFHTVEAVAYAPKKELINIKGIS-EAKADKILAEAAKL   81 (114)
T ss_dssp             HHHHHHTTCCSSGGGBTSSBHHHHHTTTTCS-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcCcHHHHHhCCHHHHHHccCCC-HHHHHHHHHHHHHH
Confidence            46788999999999999999999986 6777 77788888877665

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=89.00  E-value=0.076  Score=34.39  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=0.0

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLT   23 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt   23 (62)
                      +++|.++|.++|+++++.+++||
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~  373 (373)
T 2qol_A          351 TAHCKEIFTGVEYSSCDTIAKIS  373 (373)
T ss_dssp             -----------------------
T ss_pred             chHHHHHHHhcCCCcHHHHhccC
Confidence            47899999999999999999875

>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A

Probab=87.72  E-value=1.9  Score=22.44  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHH
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l   48 (62)
                      ...+.++||+|++.+...+.++|..+ |++ ..--.+|....+.+
T Consensus        19 a~~L~~~Gf~tve~vA~~~~~eL~~I~G~d-E~~a~~l~~~A~~~   62 (70)
T 1u9l_A           19 ATVLVEEGFSTLEELAYVPMKELLEIEGLD-EPTVEALRERAKNA   62 (70)
T ss_dssp             HHHHHHTTCCCHHHHHHSCHHHHTTSTTCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcCcHHHHHcCCHHHHhhccCCC-HHHHHHHHHHHHHH
Confidence            46788999999999999999999996 665 56666666554443

>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B

Probab=87.40  E-value=0.71  Score=24.34  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             HHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378          6 DNFERGGISSMEAVVRLTVAELNA   29 (62)
Q Consensus         6 ~~f~~~g~~~~~~~~~lt~~dL~~   29 (62)
                      ..+.++|+.++.+++..+.+||..
T Consensus        22 NcLkragI~Tv~dL~~~s~~dLlk   45 (73)
T 1z3e_B           22 NCLKRAGINTVQELANKTEEDMMK   45 (73)
T ss_dssp             HHHHHTTCCBHHHHHTSCHHHHHT
T ss_pred             HHHHHcCCCcHHHHHcCCHHHHHH
Confidence            456889999999999999999965

>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A

Probab=85.62  E-value=1.1  Score=25.06  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=22.1

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhc
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNA   29 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~   29 (62)
                      ...+.++|+.++.+++..|.+||..
T Consensus        36 ~NcLkragI~Tv~dL~~~se~dLlk   60 (98)
T 1coo_A           36 ANCLKAEAIHYIGDLVQRTEVELLK   60 (98)
T ss_dssp             HHHHHTTTCCBHHHHHTSCHHHHTT
T ss_pred             HHHHHHcCCCcHHHHHhCCHHHHHh
Confidence            4677899999999999999999954

>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1

Probab=84.71  E-value=1.1  Score=24.12  Aligned_cols=44  Identities=16%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      ...+.++|+.++.+++..|.+||..+  ...|  +   +++.+++..+.++
T Consensus        28 ~NcLk~agI~Tv~dL~~~se~dLlki--~n~G--~---kSl~EI~~~L~e~   71 (79)
T 3gfk_B           28 YNCLKRAGINTVQELANKTEEDMMKV--RNLG--R---KSLEEVKAKLEEL   71 (79)
T ss_dssp             HHHHHHTTCCBHHHHTTCCHHHHTTS--TTCH--H---HHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHhCCHHHHHHc--CCCC--H---hHHHHHHHHHHHc
Confidence            45778999999999999999999764  3334  2   3556666666543

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=82.68  E-value=3.1  Score=22.29  Aligned_cols=31  Identities=13%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             chHHHHhhcCcCcHHHHHcCCHHHHhcC-CCC
Q psy10378          3 RYLDNFERGGISSMEAVVRLTVAELNAL-GIT   33 (62)
Q Consensus         3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt   33 (62)
                      ..++.|..+++.|..++...+..+|.++ |++
T Consensus        15 ~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls   46 (83)
T 2kz3_A           15 EMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS   46 (83)
T ss_dssp             HHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC
Confidence            3578899999999999999999999976 776

>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D

Probab=81.91  E-value=1.6  Score=23.76  Aligned_cols=44  Identities=18%  Similarity=0.219  Sum_probs=31.8

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      ...+.++|+.++.+++..|.+||..+  ...|  +   +++.+++..+...
T Consensus        24 ~NcLkragI~Tv~dL~~~se~dLlki--~n~G--~---KSl~EI~~~L~~~   67 (86)
T 3k4g_A           24 ANCLXAEAIHYIGDLVQRTEVELLXT--PNLG--X---XSLTEIXDVLASR   67 (86)
T ss_dssp             HHHHHHTTCCBHHHHHHSCHHHHHTS--TTCC--H---HHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcHHHHHhCCHHHHhhc--cccC--c---ccHHHHHHHHHHc
Confidence            45688999999999999999999764  3333  2   3566666666543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=80.25  E-value=4.6  Score=27.00  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=35.5

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l   48 (62)
                      -...+.++||.+++.+...+..+|.++ ||+ ...-.+|+.++..+
T Consensus        95 ~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis-~~~~~~i~~~a~~~  139 (400)
T 3lda_A           95 DVKKLRESGLHTAEAVAYAPRKDLLEIKGIS-EAKADKLLNEAARL  139 (400)
T ss_dssp             HHHHHHHTTCCBHHHHHHSCHHHHHTSTTCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHhCCHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence            356789999999999999999999865 776 56677787776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	62
d1ucva_	81	a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal	2e-15
d1b0xa_	72	a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou	3e-14
d1x40a1	78	a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human	7e-13
d1b4fa_	74	a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)	2e-11
d1v38a_	78	a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M	1e-10
d2f3na1	64	a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat	7e-10
d1wwva1	78	a.60.1.2 (A:8-85) Connector enhancer of kinase sup	6e-08
d1ow5a_	60	a.60.1.2 (A:) Serine/threonine-protein kinase ste1	2e-07
d1dxsa_	57	a.60.1.2 (A:) C-terminal domain of p73 {Human (Hom	2e-07
d1oxja1	62	a.60.1.2 (A:594-655) RNA-binding protein Smaug {Dr	4e-06
d1kw4a_	70	a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaste	6e-06
d1pk3a1	63	a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly	6e-05
d2d8ca1	85	a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {	0.004

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (149), Expect = 2e-15
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSEG 59
          M RY D+F  GG SS+  V+R+   ++ ALGITL+GHQKKI+ SIQ MR QL++    G
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (141), Expect = 3e-14
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M RY DNF   G +++EAVV ++  +L  +GIT + HQ KI++S+QAMRTQ+ 
Sbjct: 16 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQ 68

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 7e-13
 Identities = 11/52 (21%), Positives = 31/52 (59%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQL 52
          + +YL +F   G ++++    +  + L  +GI+  GH+++I+  +Q + +++
Sbjct: 20 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM 71

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-11
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLS 53
          M +Y ++F   G +S + V ++ + ++  +G+TL GHQKKI+NSIQ MR Q++
Sbjct: 18 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMN 70

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (117), Expect = 1e-10
 Identities = 6/54 (11%), Positives = 24/54 (44%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA 54
          +  Y       G  +++ +  +  + L  L I     + +++++ +++ +  S+
Sbjct: 24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPSS 77

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (111), Expect = 7e-10
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          +  + D FE   I     +  LT  +   LG+T VGH++ I  +++ +
Sbjct: 18 LGEHRDRFEDHEIE-GAHLPALTKEDFVELGVTRVGHRENIERALRQL 64

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 6e-08
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ 51
           +     FE   +     +++L    L AL +  +GHQ+ I+  ++ ++  
Sbjct: 21 DSLQDYPFEDWQLPGK-NLLQLCPQSLEALAVRSLGHQELILGGVEQLQAL 70

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (95), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
            +YLD+F +  + + E +  L    L ALG+  +G + KI+   ++ +
Sbjct: 12 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ 60

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
              ++ F   G+ S+  +  LT+ +L AL I    ++  I   +Q +
Sbjct: 11 CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDL 57

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Length = 62

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.6 bits (87), Expect = 4e-06
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
          + +Y++ F+      M   + +T   L ++G+T  G   K+   I  ++
Sbjct: 17 LHKYIELFKNMTYEEM---LLITEDFLQSVGVTK-GASHKLALCIDKLK 61

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.1 bits (86), Expect = 6e-06
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR 49
             Y+D+F +  I   +A++RL    L       +G   KI+  +++++
Sbjct: 23 CQDYVDDFIQQEID-GQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK 70

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 63

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.5 bits (79), Expect = 6e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM 48
          +A + D F +  I   +A++RL    +       +G   KI N +  +
Sbjct: 17 LAVHGDLFRKHEID-GKALLRLNSEMMMKYMGLKLGPALKICNLVNKV 63

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.3 bits (68), Expect = 0.004
 Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 1  MARYLDNFERGGISSMEAVVRLTVAELNALGITLV--GHQKKIMNSIQAMR 49
          M  Y +  E     + + ++ LT  +     +  V   + +++++ I+ ++
Sbjct: 28 MPEYCEPLEH---FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLK 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	62
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	99.8
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	99.8
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	99.78
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	99.78
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	99.76
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	99.75
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	99.7
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	99.61
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	99.57
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	99.46
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	99.32
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	99.27
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	99.25
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	98.27
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	96.77
d1b22a_	70	DNA repair protein Rad51, N-terminal domain {Human	95.6
d2i1qa1	60	DNA repair protein Rad51, N-terminal domain {Archa	95.45
d1pzna1	61	DNA repair protein Rad51, N-terminal domain {Archa	89.16
d1lb2b_	72	C-terminal domain of RNA polymerase alpha subunit	87.66
d1doqa_	69	C-terminal domain of RNA polymerase alpha subunit	85.47
d1z3eb1	67	C-terminal domain of RNA polymerase alpha subunit	84.51

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2e-20  Score=96.64  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=44.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      |++|.++|.++||++++.+..||++||.+|||+ .|||+||+++|+.|
T Consensus        11 L~~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~-~~hr~kilk~i~~L   57 (57)
T d1dxsa_          11 CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDL   57 (57)
T ss_dssp             CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC
T ss_pred             cHHHHHHHHHccCCcHHHHHHhhHHHHHHcCCC-HHHHHHHHHHHHhC
Confidence            789999999999999999999999999999997 69999999999864

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=6.4e-20  Score=97.93  Aligned_cols=56  Identities=46%  Similarity=0.735  Sum_probs=53.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      |++|.++|.++||++++.+..++++||++|||+++|||+||+.+|+.|+.++.+.+
T Consensus        16 L~~Y~~~F~~~~~~~~~~l~~l~~~dL~~lGI~~~ghr~ki~~ai~~Lr~~~~~~~   71 (72)
T d1b0xa_          16 MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH   71 (72)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cHHHHHHHHHcCCCcHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            68999999999999899999999999999999999999999999999999998764

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=98.09  Aligned_cols=58  Identities=52%  Similarity=0.835  Sum_probs=54.7

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhccCC
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANLSE   58 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~~~   58 (62)
                      |++|.++|.++||++++.++.|+++||++|||+.+|||+||+++|+.|+.++.+....
T Consensus        19 L~qY~~~F~~~gi~~~~~L~~lt~~dL~~lGI~~~ghr~kIl~~i~~Lk~~~~~~~~~   76 (81)
T d1ucva_          19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGS   76 (81)
T ss_dssp             CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             cHHHHHHHHHcCCchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            6899999999999999999999999999999999999999999999999998876643

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.9e-20  Score=100.29  Aligned_cols=56  Identities=20%  Similarity=0.492  Sum_probs=53.3

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      |++|.++|.++||++++.++.|+++||++|||+.+|||+||+++++.|+.++.+++
T Consensus        20 L~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~ghr~kil~~i~~Lr~~~~~~p   75 (78)
T d1x40a1          20 LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQDIP   75 (78)
T ss_dssp             CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHHcCCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcCCC
Confidence            68999999999999999999999999999999999999999999999999988654

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-19  Score=94.49  Aligned_cols=56  Identities=39%  Similarity=0.711  Sum_probs=53.4

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSANL   56 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~~   56 (62)
                      |++|.+.|.++||++++.+..++++||++|||+.+|||+||+++|+.||+++++.+
T Consensus        18 L~~Y~~~F~~~~idg~~~l~~l~~~~L~~lGI~~~ghr~ril~~i~~Lr~~~~~~~   73 (74)
T d1b4fa_          18 MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQ   73 (74)
T ss_dssp             CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCcCcHHHHHhCCHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999998899999999999999999999999999999999999998764

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.5e-19  Score=92.83  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=46.8

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      |++|.+.|.++||.+++.++.++++||.+|||+.+|||+||+++++.||
T Consensus        12 L~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril~~i~~Lk   60 (60)
T d1ow5a_          12 CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ   60 (60)
T ss_dssp             CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            6899999999999899999999999999999999999999999998874

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.2e-17  Score=90.11  Aligned_cols=50  Identities=10%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.+.|.++||++++.+..++++||++|||+.+|||+||+.+++.|+.
T Consensus        24 L~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~~hr~kil~ai~~L~~   73 (78)
T d1v38a_          24 LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLS   73 (78)
T ss_dssp             CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCccchHHHccCCHHHHhHcCCCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999875

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.61  E-value=2.8e-16  Score=81.90  Aligned_cols=46  Identities=22%  Similarity=0.430  Sum_probs=42.1

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRT   50 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~   50 (62)
                      |++|.+.|.++||   +.+..+|++||.+|||+ .|||+||+.+|+.|++
T Consensus        17 L~~Y~~~F~~~~~---d~l~~lt~~dL~~lGI~-~GhRkkil~~I~~Lke   62 (62)
T d1oxja1          17 LHKYIELFKNMTY---EEMLLITEDFLQSVGVT-KGASHKLALCIDKLKE   62 (62)
T ss_dssp             CGGGGGGGTTCCH---HHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhCCH---HHHHhCCHHHHHHcCCC-HHHHHHHHHHHHHhcC
Confidence            6899999999988   46899999999999998 5999999999999874

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.5e-16  Score=80.37  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=44.2

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      |++|.+.|.++++ +++.+..++++||++|||+++|||++|+.+|+.|
T Consensus        18 l~~y~~~F~~~~i-~g~~L~~l~~~dL~~lGi~~~g~r~~il~~i~~L   64 (64)
T d2f3na1          18 LGEHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQL   64 (64)
T ss_dssp             CGGGHHHHHHTTC-CGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHCCC-cHHHhhcCCHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence            6899999999999 7999999999999999999999999999998753

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.4e-15  Score=78.34  Aligned_cols=53  Identities=21%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      +++|.+.|..+++ +++.++.|+.+||.+|||+.+|||++|+.+|..||..-..
T Consensus        21 l~~y~~~F~~~~I-~G~~Ll~L~~~dL~~lgI~~~ghr~~il~~i~~Lk~~~~~   73 (78)
T d1wwva1          21 DSLQDYPFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSR   73 (78)
T ss_dssp             HHHHTSCHHHHCC-CHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHcCC-CcHHHHHhhHHHHHHhCCCCHHHHHHHHHHHHHHHHhccc
Confidence            4689999999999 7999999999999999999999999999999999876543

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.32  E-value=1.4e-12  Score=68.24  Aligned_cols=48  Identities=23%  Similarity=0.342  Sum_probs=45.4

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMR   49 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~   49 (62)
                      +++|.+.|.++.+ +++.++.+|++||.++|+...|||.+|+.+|+.||
T Consensus        23 ~~~y~~~F~~~~I-dG~~Ll~Lt~~~L~~~~~~~~g~r~~i~~~I~~Lk   70 (70)
T d1kw4a_          23 CQDYVDDFIQQEI-DGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK   70 (70)
T ss_dssp             CGGGHHHHHHTTC-CHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHcCc-cHHHHHHccHHHHHHHcCCchHHHHHHHHHHHHhC
Confidence            5799999999999 79999999999999999999999999999999874

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.6e-12  Score=66.99  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      +++|.+.|.++.+ +++.++.+|.+||.++|+.+.|||.||+++|+.|
T Consensus        17 ~~~y~~~F~~~~I-dG~~Ll~Lt~edL~~~~~~~~G~r~ki~~~I~~L   63 (63)
T d1pk3a1          17 LAVHGDLFRKHEI-DGKALLRLNSEMMMKYMGLKLGPALKICNLVNKV   63 (63)
T ss_dssp             GGGGHHHHHHTTC-CHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCc-CHHHHHhcCHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            4789999999999 7999999999999998888999999999999864

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.7e-12  Score=70.04  Aligned_cols=50  Identities=12%  Similarity=0.300  Sum_probs=45.6

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhc--CCCCCchHHHHHHHHHHHHHHHhh
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNA--LGITLVGHQKKIMNSIQAMRTQLS   53 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~--lGIt~~gh~kkIl~~i~~l~~~~~   53 (62)
                      |++|++.|  +++ +++.++.+|++||++  |||...|||++|+.+|+.||....
T Consensus        28 l~~Y~~~F--~~I-dG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~Lk~~~~   79 (85)
T d2d8ca1          28 MPEYCEPL--EHF-TGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH   79 (85)
T ss_dssp             CTTTTTTT--TTC-CHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHH--Hhc-cHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHHHHHHhh
Confidence            57899999  567 899999999999997  999999999999999999987654

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.6e-07  Score=46.89  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             CcchHHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q psy10378          1 MARYLDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQ   51 (62)
Q Consensus         1 L~~Y~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~   51 (62)
                      +..|.+.|.+.|+.++.++-.++-+||.+|-|. ..||.+|-+++.++|+-
T Consensus        15 c~~~id~F~~q~l~~v~qLe~~sleDL~~mkIp-~~~r~~IWK~l~e~kq~   64 (67)
T d1rg6a_          15 CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIP-EQFRHAIWKGILDHRQL   64 (67)
T ss_dssp             CCSSHHHHHHHTCCSGGGGSSCCHHHHHTTTCC-THHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccchhHHHHhhcCHHHHHcCcCc-HHHHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999997 89999999999999864

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0017  Score=32.61  Aligned_cols=43  Identities=21%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHHHH
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~~l   48 (62)
                      ...+.++||+|++.+...|.+||.++ |+. ..--.||+.+.+.+
T Consensus        16 ~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~-e~~a~KIi~~A~k~   59 (64)
T d1szpa1          16 VKKLRESGLHTAEAVAYAPRKDLLEIKGIS-EAKADKLLNEAARL   59 (64)
T ss_dssp             HHHHHTTSCCSHHHHHHSCSHHHHTSTTCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHhCCHHHHHHcCCCC-HHHHHHHHHHHHHH
Confidence            35688999999999999999999996 776 66677777776654

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0064  Score=30.91  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHH
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAM   48 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l   48 (62)
                      ...+.++||+|++.++.++..||.++---...--.||+.+++.+
T Consensus        23 i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k~   66 (70)
T d1b22a_          23 VKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL   66 (70)
T ss_dssp             HHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999985433366677888776643

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.45  E-value=0.024  Score=27.65  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             chHHHHhhcCcCcHHHHHcCCHHHHhcC-CCCCchHHHHHHHHHH
Q psy10378          3 RYLDNFERGGISSMEAVVRLTVAELNAL-GITLVGHQKKIMNSIQ   46 (62)
Q Consensus         3 ~Y~~~f~~~g~~~~~~~~~lt~~dL~~l-GIt~~gh~kkIl~~i~   46 (62)
                      .......++||.|++.+...+.++|.++ ||+ ..--++|+.+.+
T Consensus        10 ~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~-~~~A~~i~~~ar   53 (60)
T d2i1qa1          10 STAEKLVEAGYIDFMKIATATVGELTDIEGIS-EKAAAKMIMGAR   53 (60)
T ss_dssp             HHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHhCCHHHHHHCCCCC-HHHHHHHHHHHH
Confidence            3456778889999999999999999985 666 555556655543

>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.16  E-value=0.38  Score=22.98  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             hHHHHhhcCcCcHHHHHcCCHHHHhc-CCCCCchHHHHHHHHHH
Q psy10378          4 YLDNFERGGISSMEAVVRLTVAELNA-LGITLVGHQKKIMNSIQ   46 (62)
Q Consensus         4 Y~~~f~~~g~~~~~~~~~lt~~dL~~-lGIt~~gh~kkIl~~i~   46 (62)
                      ......++||.|++.+...+.++|.+ -||+ .---++|+.+.+
T Consensus        13 ~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~-~~~A~~i~~~ar   55 (61)
T d1pzna1          13 TAEKLREAGYDTLEAIAVASPIELKEVAGIS-EGTALKIIQAAR   55 (61)
T ss_dssp             HHHHHHTTTCCSHHHHHTCCHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHhCCHHHHHHCCCCC-HHHHHHHHHHHH
Confidence            34566778999999999999999986 3555 445556665543

>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Escherichia coli [TaxId: 562]

Probab=87.66  E-value=0.29  Score=24.54  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      ...|..+|+.++.+++..+++||.++-  ..|  +   +++++++..+...
T Consensus        18 ~N~L~~~gI~tvgdL~~~s~~dLl~~~--n~G--~---KSl~EI~~~L~~~   61 (72)
T d1lb2b_          18 ANCLKAEAIHYIGDLVQRTEVELLKTP--NLG--K---KSLTEIKDVLASR   61 (72)
T ss_dssp             HHHHHHTTCCBHHHHHTCCHHHHHHST--TCC--H---HHHHHHHHHHHHT
T ss_pred             HHHHhHcCCcCHHHHHhCCHHHHHhCC--CCc--H---hHHHHHHHHHHHc
Confidence            467889999999999999999998742  233  2   3666666666653

>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Thermus thermophilus [TaxId: 274]

Probab=85.47  E-value=0.45  Score=23.55  Aligned_cols=43  Identities=26%  Similarity=0.521  Sum_probs=30.8

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhh
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSA   54 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~   54 (62)
                      ...+..+|+.++.++...+++||..  +...|.     +++.+++..+..
T Consensus        20 ~N~L~~~gI~tv~dL~~~s~~dLl~--i~n~G~-----ksl~EI~~~L~~   62 (69)
T d1doqa_          20 LHSLKEEGIESVRALLALNLKDLKN--IPGIGE-----RSLEEIKEALEK   62 (69)
T ss_dssp             HHHHHHTTCCSHHHHHHSCHHHHTT--STTCCH-----HHHHHHHHHHHH
T ss_pred             HHHHHHcCCccHHHHHHCCHHHHHh--CCCCCH-----HHHHHHHHHHHH
Confidence            4578889999999999999999965  334453     255555555544

>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=84.51  E-value=0.55  Score=23.15  Aligned_cols=44  Identities=16%  Similarity=0.407  Sum_probs=31.5

Q ss_pred             HHHHhhcCcCcHHHHHcCCHHHHhcCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy10378          5 LDNFERGGISSMEAVVRLTVAELNALGITLVGHQKKIMNSIQAMRTQLSAN   55 (62)
Q Consensus         5 ~~~f~~~g~~~~~~~~~lt~~dL~~lGIt~~gh~kkIl~~i~~l~~~~~~~   55 (62)
                      ...+..+|+.++.++...+++||..+  ...|  +   +++.+++..+..+
T Consensus        19 ~N~Lk~~~I~tv~dL~~~s~~dLl~~--~nfG--~---kSl~EIk~~L~~~   62 (67)
T d1z3eb1          19 YNCLKRAGINTVQELANKTEEDMMKV--RNLG--R---KSLEEVKAKLEEL   62 (67)
T ss_dssp             HHHHHHTTCCBHHHHHTSCHHHHHTS--TTCC--H---HHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcCHHHHHHCCHHHHHhC--CCCc--h---hhHHHHHHHHHHc
Confidence            45678899999999999999999863  2233  2   2566666666543