Psyllid ID: psy1039

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHcccccHEEEEEEc
Coil and Loop (DISEMBL)
midnnmndynklkesgnsafkqgdYETALDFYTKALKVTAEESHERATCLKNRAAVYLkqnqndkviEDCSksleivpddpkaLFRRCQAYEAIGKFEEAYtdakhihrveptnkaIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYvfdtsapmdkrVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Flexible Loop (DISEMBL)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSleivpddpkaLFRRCQAYEAIGKFEEAYTDAKHIHrveptnkaiqPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTllkcetneEIYLALTL
Low Complexity Region (SEG)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Disordered region (IsUnstruct)
***********************DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLAL**
Disordered Region (DISOPRED)
******N****LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL*************************************************************GVAKQINTLLKCETNEEIYLALTL
Disordered Region (DISEMBL)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Disordered Region (DISPRO)
*****MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
D7REX8	927	Protein unc-45 homolog B	yes	N/A	0.961	0.213	0.351	5e-29
Q68F64	927	Protein unc-45 homolog B	N/A	N/A	0.961	0.213	0.351	1e-28
Q6DGE9	934	Protein unc-45 homolog B	no	N/A	0.990	0.218	0.341	2e-28
Q8IWX7	931	Protein unc-45 homolog B	yes	N/A	0.844	0.186	0.380	9e-27
Q8CGY6	931	Protein unc-45 homolog B	yes	N/A	0.844	0.186	0.380	3e-26
Q99KD5	944	Protein unc-45 homolog A	no	N/A	0.975	0.212	0.349	1e-23
Q32PZ3	944	Protein unc-45 homolog A	yes	N/A	0.917	0.200	0.356	5e-23
Q5RAP0	929	Protein unc-45 homolog A	yes	N/A	0.898	0.199	0.363	6e-23
Q9H3U1	944	Protein unc-45 homolog A	no	N/A	0.898	0.195	0.352	4e-22
Q99614	292	Tetratricopeptide repeat	no	N/A	0.650	0.458	0.340	2e-13

>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 114/199 (57%), Gaps = 1/199 (0%)

Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M D  +LKE GN  F+  +Y  A+  Y+KALK+  ++  + A   +NR+A YLKQ+   +
Sbjct: 1   MEDPVQLKEEGNKYFQSNEYGQAIQCYSKALKLITDKKMQ-AVLYRNRSACYLKQDNYVQ 59

Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
              D SK++++   D KALFRRCQA E +GK ++AY D +    +EP N+     L RL 
Sbjct: 60  AAADASKAIDVDASDIKALFRRCQALEKLGKLDQAYKDVQRCATLEPKNRTFLETLHRLG 119

Query: 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
             + +++       ++VH MF+ + D ++  +KR  A NNL+VL RE +GAE + ++   
Sbjct: 120 TNIQEKLHVQFSTDSRVHKMFEILLDKNSEKEKREKAANNLIVLGREDAGAEQIFQNNGV 179

Query: 186 KQINTLLKCETNEEIYLAL 204
             +  L++ +  E I  A+
Sbjct: 180 NLLMQLIESKDPEMILSAI 198

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development.
Xenopus tropicalis (taxid: 8364)

>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 115/199 (57%), Gaps = 1/199 (0%)

Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M D  +LKE GN  F+  DY  A++ Y+KALK+  ++   +A   +NR+A YLKQ    +
Sbjct: 1   MEDPVQLKEEGNKYFQSNDYGNAIECYSKALKLITDKKM-KAVLYRNRSACYLKQENYIQ 59

Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
              D SK++++   D KALFRRCQA E +GK ++AY D +    +EP N+    +L RL 
Sbjct: 60  AAADASKAIDVDASDIKALFRRCQALEKLGKLDQAYKDVQRCATLEPKNRTFLEMLHRLG 119

Query: 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
           + + +++       ++V  MF+ + D ++  +KR  A NNL+VL RE +GAE + ++   
Sbjct: 120 SNIQEKLHVQFSTDSRVQKMFEILLDENSDKEKREKAANNLIVLGREDAGAERIFQNNGV 179

Query: 186 KQINTLLKCETNEEIYLAL 204
             +  L++ +  E I  A+
Sbjct: 180 NLLMQLIETKDPELILSAV 198

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell assembly.

Xenopus laevis (taxid: 8355)

>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 1/205 (0%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLK 59
           M    + D  +LKE GN  F+ G+ + A+D YTKA+K   +E  +  A   +NR+A +LK
Sbjct: 1   MTMGEIGDSVQLKEEGNKHFQAGEIDQAIDCYTKAIKTCKKEDKKALAVIYRNRSACFLK 60

Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
           +        D +K++++   D KAL+RRCQA+E +GK + A+ D +    +EP NK    
Sbjct: 61  KENYSNAASDATKAIDVDAADIKALYRRCQAFEKLGKLDMAFKDVQRCATIEPKNKTFLE 120

Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179
            L RL A + ++++      ++V NMF  +F      +KR  A NNL+VLARE +GAE +
Sbjct: 121 TLRRLGAEIQQKLKTTFSTDSRVQNMFDILFSDEPDKEKREKAANNLIVLAREDAGAERI 180

Query: 180 LKSGVAKQINTLLKCETNEEIYLAL 204
            ++     +  L+     E I  A+
Sbjct: 181 FQNNGVPLLMQLIDTGKPEMILAAI 205

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development. Required for myoseptal integrity, myofiber attachment, motility and craniofacial development.

Danio rerio (taxid: 7955)

>sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1

 Score =  120 bits (300), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 2/176 (1%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LKE GN  F+  DY+ A + Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct: 8   QLKEEGNRHFQLQDYKAATNSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDA 66

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
           S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q +L RL   + +
Sbjct: 67  SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQEMLRRLNTSIQE 126

Query: 131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLK-SGVA 185
           +++      ++V  MF+ + D ++  DKR  A NNL+VL RE +GAE + + +GVA
Sbjct: 127 KLRVQFSTDSRVQKMFEILLDENSEADKREKAANNLIVLGREEAGAEKIFQNNGVA 182

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.

Homo sapiens (taxid: 9606)

>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LKE GN  F+  DY+ A   Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct: 8   QLKEEGNRHFQLQDYKAATKSYSQALKLTKDKAL-LATLYRNRAACGLKMESYAQAASDA 66

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
           S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q  L RL   + +
Sbjct: 67  SRAIDINSADIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNTSIQE 126

Query: 131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
           +++      ++V  MF+ + + ++  DKR  A NNL+VL RE +GAE + +S GVA
Sbjct: 127 QLRVQFSTDSRVQTMFEILLNENSEADKREKAANNLIVLGREEAGAERIFQSNGVA 182

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.

Mus musculus (taxid: 10090)

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 2/203 (0%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D   +   +L++ GN  FK GDYE AL  YT+AL + A    ++A   +NRAA +LK   
Sbjct: 15  DPGASSAEQLRKEGNELFKCGDYEGALTAYTQALSLGAT-PQDQAILHRNRAACHLKLED 73

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
             K   + SK++E    D KAL+RR QA E +G+ ++A  D K    +EP NK  Q  L 
Sbjct: 74  YSKAESEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQESLR 133

Query: 123 RLFAIVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDKRVTAVNNLVVLAREMSGAEMLLK 181
            +   + ++++       KV  MF+ + D      +K+  A  NLVVLARE +GAE + +
Sbjct: 134 NIGGQIQEKVRYMSSTDAKVEQMFQILLDPKEKGTEKKQKASQNLVVLAREDAGAEKIFR 193

Query: 182 SGVAKQINTLLKCETNEEIYLAL 204
           S   + +  LL  E  + +  AL
Sbjct: 194 SNGVQLLQRLLDTEETDLMLAAL 216

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D   +   +L++ GN  FK GDYE AL  YT+AL + A    ++A   +NRAA +LK   
Sbjct: 15  DPGASSAEELRKEGNELFKCGDYEGALTAYTQALSLGAT-PQDQAILHRNRAACHLKLED 73

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
             K   + SK++E    D KAL+RR QA E +G+ ++A  D K    +EP NK  Q  L 
Sbjct: 74  YSKAESEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQESLR 133

Query: 123 RLFAIVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDKRVTAVNNLVVLAREMSGAEMLLK 181
            +   + ++++       KV  MF+ + D      +K+  A  NLVVLARE +GAE + +
Sbjct: 134 NIGGQIQEKVRYMSSTDAKVEQMFQILLDPKEKGTEKKQKASQNLVVLAREDAGAEKIFR 193

Query: 182 SGVAKQINTLL 192
           S   + +  LL
Sbjct: 194 SNGVQLLQRLL 204

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +   +L++ GN  FK GDY  AL  YT+AL + A    ++A   +NRAA YLK    DK 
Sbjct: 4   SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACYLKLEDYDKA 62

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
             + SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L  +  
Sbjct: 63  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGG 122

Query: 127 IVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
            + ++++       KV  MF+ + D      +K+  A  NLVVLARE +GAE  L+S   
Sbjct: 123 QIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVLAREDAGAEKTLRSNGV 182

Query: 186 KQINTLL 192
           + +  LL
Sbjct: 183 QLLQRLL 189

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +   +L++ GN  FK GDY  AL  YT+AL + A    ++A   +NRAA +LK    DK 
Sbjct: 19  SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKA 77

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
             + SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L  +  
Sbjct: 78  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGG 137

Query: 127 IVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
            + ++++       KV  MF+ + D      +K+  A  NLVVLARE +GAE + +S   
Sbjct: 138 QIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVLAREDAGAEKIFRSNGV 197

Query: 186 KQINTLL 192
           + +  LL
Sbjct: 198 QLLQRLL 204

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIED 69
           +LKE GN  FK+GDY  A   Y++AL++       ER+    NRAA  +KQ++ +  I D
Sbjct: 118 RLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAIND 177

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           CSK++++ P   +A+ RR + YE   K +EA  D K I   +P+    +    RL   + 
Sbjct: 178 CSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIE 237

Query: 130 KRMQENEQLQNKVHNMFK 147
           +R   NE+L+ ++    K
Sbjct: 238 ER---NERLKEEMLGKLK 252

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
91084547	923	PREDICTED: similar to AGAP003727-PA [Tri	0.922	0.205	0.526	1e-50
193690802	929	PREDICTED: protein unc-45 homolog A-like	0.927	0.205	0.510	3e-48
345492367	946	PREDICTED: protein unc-45 homolog B-like	0.927	0.201	0.502	5e-48
380027387	941	PREDICTED: protein unc-45 homolog B-like	0.927	0.202	0.486	9e-47
340722717	940	PREDICTED: LOW QUALITY PROTEIN: protein	0.927	0.203	0.492	1e-46
350424382	940	PREDICTED: protein unc-45 homolog B-like	0.927	0.203	0.492	2e-46
157127851	448	heat shock protein 70 (hsp70)-interactin	0.941	0.433	0.497	4e-46
383850080	940	PREDICTED: protein unc-45 homolog B-like	0.912	0.2	0.484	1e-45
48105896	942	PREDICTED: protein unc-45 homolog A [Api	0.912	0.199	0.478	6e-45
125777358	946	GA15439 [Drosophila pseudoobscura pseudo	0.970	0.211	0.462	1e-44

>gi|91084547|ref|XP_973113.1| PREDICTED: similar to AGAP003727-PA [Tribolium castaneum] gi|270009248|gb|EFA05696.1| translocase of outer membrane 34 [Tribolium castaneum]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 135/190 (71%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN+AFK G++++A   YTKA+ +   ES + +  LKNRAA YLK  + ++ + DC
Sbjct: 8   KYKEEGNAAFKSGNWDSAAKLYTKAINLETSESRDLSVFLKNRAAAYLKLGKFEEALSDC 67

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
            +SLEIVP DPKALFRRCQA EA+ +FEEAY DA  I + +P N+ IQPVL RL+ IV +
Sbjct: 68  DRSLEIVPRDPKALFRRCQALEALERFEEAYRDATQIFKDDPNNRTIQPVLERLYRIVQE 127

Query: 131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINT 190
           R++EN Q   K+ +M K  FD +A  +KR TA+NNL+VLARE +G+ +++KS V +QI  
Sbjct: 128 RVKENAQTSTKIESMTKLAFDLAADREKRETAMNNLLVLARENAGSSLMIKSPVVQQIKK 187

Query: 191 LLKCETNEEI 200
           LLK E N EI
Sbjct: 188 LLKVEKNREI 197

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193690802|ref|XP_001942781.1| PREDICTED: protein unc-45 homolog A-like [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 131/192 (68%), Gaps = 1/192 (0%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           LKE GN AFK G++  AL +YT AL +  E   +++   KNRAAVY+K  + +  I DCS
Sbjct: 12  LKEKGNVAFKDGNWLKALQYYTSALDLLKENIRDKSILYKNRAAVYIKLGEFENAIRDCS 71

Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131
            SL+IV +DPKALFRRC AYE +GK+EEAY D K     +P NK IQPVLSRL  IV ++
Sbjct: 72  ASLDIVANDPKALFRRCCAYEELGKYEEAYIDGKQCLSSDPLNKEIQPVLSRLHPIVQEK 131

Query: 132 MQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINT 190
           ++EN QL NK+ +MFKY F     ++KR TA+ NL+VL++E  SG+  LLKSG+  +I  
Sbjct: 132 VRENAQLSNKIESMFKYAFKIEESLEKRTTAIKNLLVLSKESSSGSAGLLKSGIVSKIKG 191

Query: 191 LLKCETNEEIYL 202
           LLK + N E+ +
Sbjct: 192 LLKNDQNAEVRI 203

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492367|ref|XP_001600626.2| PREDICTED: protein unc-45 homolog B-like [Nasonia vitripennis]

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 137/191 (71%)

Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           KE GN  FK G  + AL  YT ALK+T +++ ++A  LKNRAAVYLKQ +  KVI+DC +
Sbjct: 12  KEKGNEEFKNGFLDKALSCYTNALKLTKDDNFDKAVYLKNRAAVYLKQKEYKKVIKDCDE 71

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132
           +L+I  +DPKALFRRCQA EA+ +FEEAY DA+ +   +P+NKAIQP+ +RL  I  +R+
Sbjct: 72  ALKISSNDPKALFRRCQALEALERFEEAYRDARGVITTDPSNKAIQPIAARLHEICQERL 131

Query: 133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLL 192
           +EN ++  KV  MF+  FD +   +KR +A+NNL+VL +E +GA+++ K G+A +I+ LL
Sbjct: 132 RENSKVSAKVSQMFELAFDFAVDKEKRESAMNNLLVLTKEKAGADLMFKQGIATKIHKLL 191

Query: 193 KCETNEEIYLA 203
           K E NE I +A
Sbjct: 192 KTEKNEGIIVA 202

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027387|ref|XP_003697407.1| PREDICTED: protein unc-45 homolog B-like [Apis florea]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 133/191 (69%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           ++ KE GN  F +G++  AL  YT ALK+  +++ E+AT  KNRAA YLKQ + +K I+D
Sbjct: 10  HEWKEKGNIEFNKGNWSEALSCYTSALKLADKDNSEKATYYKNRAATYLKQEEYNKAIKD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           C ++L+I P+DPKALFRRCQA E++ +FEEAY DA++I   +PTNK IQP+ +RL  IV 
Sbjct: 70  CDEALKICPNDPKALFRRCQALESLERFEEAYRDARYIISADPTNKTIQPIAARLHEIVQ 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
           +R ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I 
Sbjct: 130 ERYRQNSRVSAKVSQMMDIAFEMKENNEKRETAMNNLLVLARERAGAEVMFNDGIISKIT 189

Query: 190 TLLKCETNEEI 200
            +LK E NEEI
Sbjct: 190 KMLKLEKNEEI 200

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722717|ref|XP_003399749.1| PREDICTED: LOW QUALITY PROTEIN: protein unc-45 homolog B-like [Bombus terrestris]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 133/191 (69%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           ++ KE GN  F +G++  AL  YT ALK+T E++ E+A   KNRAA YLKQ + +K IED
Sbjct: 10  HEWKEEGNVEFNKGNWSEALSCYTNALKLTNEDNSEKAIYYKNRAATYLKQEEYNKAIED 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           C ++L+I P+DPKALFRRCQA EA+ ++EEAY DA++I   +P NKAIQP+ ++L  IV 
Sbjct: 70  CDEALKISPNDPKALFRRCQALEALERYEEAYRDARYIISADPGNKAIQPIAAKLHEIVQ 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
           +R ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   GV  +I 
Sbjct: 130 ERYRQNSRVSVKVSQMIDIAFEIKGDSEKRETAMNNLLVLARERAGAEIMFNDGVISKII 189

Query: 190 TLLKCETNEEI 200
            +LK E +EEI
Sbjct: 190 KMLKLEKSEEI 200

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424382|ref|XP_003493777.1| PREDICTED: protein unc-45 homolog B-like [Bombus impatiens]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 133/191 (69%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           ++ KE GN  F +G++  AL  YT ALK+T E++ E+A   KNRAA YLKQ + +K IED
Sbjct: 10  HEWKEEGNVEFNKGNWSEALSCYTNALKLTNEDNSEKAIYYKNRAATYLKQEEYNKAIED 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           C ++L+I P+DPKALFRRCQA EA+ ++EEAY DA++I   +P NKAIQP+ ++L  IV 
Sbjct: 70  CDEALKISPNDPKALFRRCQALEALERYEEAYRDARYIISADPGNKAIQPIAAKLHEIVQ 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
           +R ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   GV  +I 
Sbjct: 130 ERYRQNSRVSVKVSQMIDIAFEIKGDSEKRETAMNNLLVLARERAGAEIMFNDGVISKII 189

Query: 190 TLLKCETNEEI 200
            +LK E +EEI
Sbjct: 190 KMLKLEKSEEI 200

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127851|ref|XP_001661211.1| heat shock protein 70 (hsp70)-interacting protein [Aedes aegypti] gi|108872793|gb|EAT37018.1| AAEL010948-PA [Aedes aegypti]

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/195 (49%), Positives = 132/195 (67%), Gaps = 1/195 (0%)

Query: 8   DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
           D N  KE GN  FK G +++A+ +Y+KA+ +  E+  +     KNRAA YLK  + ++  
Sbjct: 12  DPNACKERGNEEFKNGYWDSAVTWYSKAIAL-GEKHKDLPVYYKNRAAAYLKLEKFEQAA 70

Query: 68  EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
           EDCSKSL+  P+DPKALFRR QAYEA+ +FEEAY D + IH  +P NK I+P L RL AI
Sbjct: 71  EDCSKSLDQCPNDPKALFRRFQAYEALQRFEEAYKDLRTIHTYDPNNKMIKPHLERLHAI 130

Query: 128 VTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQ 187
           V +R ++  Q  NKV  MF+  FD +AP +KR  A+NN+VVLARE +GAE++LK G+  +
Sbjct: 131 VQERARDRAQTTNKVTKMFEIAFDLAAPKEKREQAMNNIVVLARESAGAEVMLKDGLVTR 190

Query: 188 INTLLKCETNEEIYL 202
           I  LLK E N +I +
Sbjct: 191 IGKLLKVEKNNDIII 205

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850080|ref|XP_003700645.1| PREDICTED: protein unc-45 homolog B-like [Megachile rotundata]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 131/188 (69%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           ++ KE GN+ F +G++  AL  YT ALK+T EE+ E+A   KNRAA YLKQ + +K I+D
Sbjct: 10  HEWKEKGNAEFNKGNWAEALSCYTNALKLTNEENSEKAIYYKNRAAAYLKQAEYNKAIKD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           C ++L+I P+DPKALFRRCQA +A+ ++EEAY DA++I   +P NKAIQP+ +RL  IV 
Sbjct: 70  CDEALKICPNDPKALFRRCQALDALERYEEAYRDARYIISADPGNKAIQPIAARLHEIVQ 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
           +R ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I 
Sbjct: 130 ERYRQNSRVSAKVSQMMDIAFEMKGDNEKRETAMNNLLVLARERAGAEVMFSDGIVSKII 189

Query: 190 TLLKCETN 197
            +LK E N
Sbjct: 190 KMLKLEKN 197

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48105896|ref|XP_396019.1| PREDICTED: protein unc-45 homolog A [Apis mellifera]

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 129/188 (68%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           ++ KE GN  F +G++  AL  YT ALK+  +++ E+AT  KNRAA YLKQ + +K I+D
Sbjct: 10  HEWKEKGNIEFNKGNWSEALTCYTSALKLADKDNSEKATYYKNRAATYLKQEEYNKAIKD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
           C ++L+I P+DPKALFRRCQA EA+ +FEEAY DA++I   +P NK IQP+ +RL  IV 
Sbjct: 70  CDEALKICPNDPKALFRRCQALEALERFEEAYRDARYIISADPANKTIQPIAARLHEIVQ 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
           +R ++N ++  KV  M    F+     +KR TA+NNL+VLARE +GAE++   G+  +I 
Sbjct: 130 ERYRQNSRVSAKVSQMMDIAFEMKENNEKRETAMNNLLVLARERAGAEIMFNDGIVSKIT 189

Query: 190 TLLKCETN 197
            +LK E N
Sbjct: 190 KILKLEKN 197

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125777358|ref|XP_001359581.1| GA15439 [Drosophila pseudoobscura pseudoobscura] gi|54639329|gb|EAL28731.1| GA15439 [Drosophila pseudoobscura pseudoobscura]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 132/201 (65%), Gaps = 1/201 (0%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           I N+       K+ GN AFK   ++ A+  Y+ A+K+ A    E     KNRAA YLK  
Sbjct: 5   ISNDDASAGSHKDKGNEAFKGSQWDEAVKHYSNAIKLGATHK-ELPVFYKNRAAAYLKLE 63

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
           + +K +EDC++SL++VP+DPKALFRR QAYE++ K+EEAY DA  + + +P NK +QPVL
Sbjct: 64  KFEKAVEDCTESLKLVPNDPKALFRRAQAYESLEKYEEAYRDATALFKADPGNKTVQPVL 123

Query: 122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLK 181
            RL  IV +R+  N +L  KV NM    FD ++P++KR +A NNLVVLA+E +GAE+L K
Sbjct: 124 QRLHVIVQERVARNAKLSTKVKNMMDLTFDLTSPLEKRRSAANNLVVLAKESTGAELLYK 183

Query: 182 SGVAKQINTLLKCETNEEIYL 202
                ++ TL K E ++EIY+
Sbjct: 184 EHCVAKVATLAKVEKDQEIYI 204

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
FB|FBgn0010812	947	unc-45 [Drosophila melanogaste	0.951	0.206	0.451	1.5e-41
ZFIN|ZDB-GENE-050417-158	935	unc45a "unc-45 homolog A (C. e	0.951	0.209	0.406	4.3e-32
ZFIN|ZDB-GENE-020919-3	934	unc45b "unc-45 homolog B (C. e	0.990	0.218	0.341	3.1e-28
UNIPROTKB|Q8IWX7	931	UNC45B "Protein unc-45 homolog	0.873	0.193	0.373	1.2e-26
UNIPROTKB|F1MFZ5	931	UNC45B "Uncharacterized protei	0.844	0.186	0.375	4.3e-26
MGI|MGI:2443377	931	Unc45b "unc-45 homolog B (C. e	0.844	0.186	0.380	7e-26
UNIPROTKB|F1PUV3	943	UNC45B "Uncharacterized protei	0.844	0.184	0.380	9.2e-26
UNIPROTKB|F1P0Z6	839	F1P0Z6 "Uncharacterized protei	0.878	0.215	0.387	1.2e-25
UNIPROTKB|F1S166	929	UNC45B "Uncharacterized protei	0.844	0.187	0.369	1.9e-25
UNIPROTKB|F1NXC5	953	UNC45B "Uncharacterized protei	0.951	0.205	0.359	6.7e-25

FB|FBgn0010812 unc-45 [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 1.5e-41, P = 1.5e-41
 Identities = 89/197 (45%), Positives = 125/197 (63%)

Query:     6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
             ++D    K+ GN AFK   +E A++ Y KA+K  ++   E A   KNRAA YLK  + + 
Sbjct:    10 VSDAGSYKDKGNEAFKASRWEEAVEHYGKAIKAGSKHK-ELAVFYKNRAAAYLKLGKYEN 68

Query:    66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
              +EDC++SL+  P DPKALFRR QAYEA+ KFEEAY DA  + + +P NK +QP+L RL 
Sbjct:    69 AVEDCTESLKAAPGDPKALFRRAQAYEALEKFEEAYKDATALFKADPGNKTVQPMLQRLH 128

Query:   126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVA 185
              +V +R   N +   KV  M    FD + P+DKR  A NNLVVLA+E +GAE+L K    
Sbjct:   129 VVVEERSARNAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCI 188

Query:   186 KQINTLLKCETNEEIYL 202
              ++ +L K E +++IY+
Sbjct:   189 AKVASLTKVEKDQDIYV 205

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IDA

GO:0007525 "somatic muscle development" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

ZFIN|ZDB-GENE-050417-158 unc45a "unc-45 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 362 (132.5 bits), Expect = 4.3e-32, P = 4.3e-32
 Identities = 80/197 (40%), Positives = 119/197 (60%)

Query:     8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
             D + L+E GN+ FK GD + AL  YTKALK++   S E A   +NR+A YLK     K  
Sbjct:     4 DSSALREEGNNHFKAGDVQQALTCYTKALKISDCPS-ESAVLYRNRSACYLKLEDYTKAE 62

Query:    68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
             ED +KSL++ P D KA FRR QA + +G+ ++A+ D +   ++EP NKA Q +L +L A 
Sbjct:    63 EDATKSLDVDPGDIKARFRRAQALQKLGRLDQAFMDVQKCAQLEPKNKAFQDLLRQLGAQ 122

Query:   128 VTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQ 187
             + ++  +     ++V  MFK + D+SAP+  R  A  NLVVL+RE +GAE + ++   K 
Sbjct:   123 IQQKATQLSSTDSRVQQMFKLLLDSSAPIADRQKAAQNLVVLSREDAGAEQIFRNDGVKL 182

Query:   188 INTLLKCETNEEIYLAL 204
             +  LL+ +  E I  AL
Sbjct:   183 LQNLLESKQEELILSAL 199

GO:0005575 "cellular_component" evidence=ND

GO:0008015 "blood circulation" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

ZFIN|ZDB-GENE-020919-3 unc45b "unc-45 homolog B (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 70/205 (34%), Positives = 112/205 (54%)

Query:     1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLK 59
             M    + D  +LKE GN  F+ G+ + A+D YTKA+K   +E  +  A   +NR+A +LK
Sbjct:     1 MTMGEIGDSVQLKEEGNKHFQAGEIDQAIDCYTKAIKTCKKEDKKALAVIYRNRSACFLK 60

Query:    60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +        D +K++++   D KAL+RRCQA+E +GK + A+ D +    +EP NK    
Sbjct:    61 KENYSNAASDATKAIDVDAADIKALYRRCQAFEKLGKLDMAFKDVQRCATIEPKNKTFLE 120

Query:   120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179
              L RL A + ++++      ++V NMF  +F      +KR  A NNL+VLARE +GAE +
Sbjct:   121 TLRRLGAEIQQKLKTTFSTDSRVQNMFDILFSDEPDKEKREKAANNLIVLAREDAGAERI 180

Query:   180 LKSGVAKQINTLLKCETNEEIYLAL 204
              ++     +  L+     E I  A+
Sbjct:   181 FQNNGVPLLMQLIDTGKPEMILAAI 205

GO:0005515 "protein binding" evidence=IPI

GO:0030239 "myofibril assembly" evidence=IMP

GO:0060538 "skeletal muscle organ development" evidence=IMP

GO:0030018 "Z disc" evidence=IDA

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|Q8IWX7 UNC45B "Protein unc-45 homolog B" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 68/182 (37%), Positives = 110/182 (60%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A + Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATNSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q +L RL   + +
Sbjct:    67 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQEMLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVAKQIN 189
             +++      ++V  MF+ + D ++  DKR  A NNL+VL RE +GAE + ++ GVA  + 
Sbjct:   127 KLRVQFSTDSRVQKMFEILLDENSEADKREKAANNLIVLGREEAGAEKIFQNNGVALLLQ 186

Query:   190 TL 191
              L
Sbjct:   187 LL 188

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1MFZ5 UNC45B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 306 (112.8 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 66/176 (37%), Positives = 107/176 (60%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A   Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:    10 QLKEEGNQHFQLQDYKAATKSYSQALKLTKDKAL-LATLYRNRAACGLKMESYVQAASDA 68

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N++ Q  L RL   + +
Sbjct:    69 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPQNQSFQETLRRLNTSIQE 128

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
             +++      ++V  MF+ + D ++  DK   A NNL+VL+RE +GAE + ++ GVA
Sbjct:   129 KLRVQFSTDSRVQTMFEILLDRNSEADKLEKAANNLIVLSREEAGAERIFQNNGVA 184

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

MGI|MGI:2443377 Unc45b "unc-45 homolog B (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 7.0e-26, P = 7.0e-26
 Identities = 67/176 (38%), Positives = 106/176 (60%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A   Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATKSYSQALKLTKDKAL-LATLYRNRAACGLKMESYAQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q  L RL   + +
Sbjct:    67 SRAIDINSADIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
             +++      ++V  MF+ + + ++  DKR  A NNL+VL RE +GAE + +S GVA
Sbjct:   127 QLRVQFSTDSRVQTMFEILLNENSEADKREKAANNLIVLGREEAGAERIFQSNGVA 182

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

UNIPROTKB|F1PUV3 UNC45B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 9.2e-26, P = 9.2e-26
 Identities = 67/176 (38%), Positives = 105/176 (59%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A   Y++ALK+T +++   AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATKSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q  L RL   + +
Sbjct:    67 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
             +++      ++V  MF+ + D S+  DK   A NNL+VL RE +GAE + ++ GVA
Sbjct:   127 KLRVQFSTDSRVQKMFEILLDESSDADKLEKAANNLIVLGREEAGAERIFQNNGVA 182

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1P0Z6 F1P0Z6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 71/183 (38%), Positives = 105/183 (57%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +L+E GN+ F+ GD+  AL  YT+AL +   E  ERA   +NRAA YLK     K   D 
Sbjct:    13 QLRERGNALFQAGDHAAALAAYTQALSLCQAEP-ERAVLHRNRAACYLKLEDYAKAEADA 71

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             SK++E    D KALFRR QA + +G+ ++A +D +    +EP NKA Q  L  L + + +
Sbjct:    72 SKAIEADGRDMKALFRRSQALQKLGRLDQAVSDLQRCVSLEPKNKAFQEALRTLGSSMHE 131

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAP-MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQIN 189
             +M+      +KV  MF+ + D     +DK+  A  NL+VLARE +GAE + +S   + + 
Sbjct:   132 KMKTMSCTDSKVEQMFQILLDPQEKDVDKKQKAAQNLIVLAREEAGAEKIFQSDGVRLLT 191

Query:   190 TLL 192
              LL
Sbjct:   192 QLL 194

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

UNIPROTKB|F1S166 UNC45B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 65/176 (36%), Positives = 106/176 (60%)

Query:    11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
             +LKE GN  F+  DY+ A + Y++ALK+T +++ + AT  +NRAA  LK     +   D 
Sbjct:     8 QLKEEGNRHFQLQDYKAATESYSQALKLTKDKALQ-ATLYRNRAACGLKTESYVQAASDA 66

Query:    71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
             S++++I   D KAL+RRCQA E +GK ++A+ D +    +EP N+  Q  L RL   + +
Sbjct:    67 SRAIDINSSDIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNTSIQE 126

Query:   131 RMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKS-GVA 185
             +++      ++V  MF+ + D ++  D    A NNL+VL RE +GAE + ++ GVA
Sbjct:   127 KLRVQFSTDSRVQKMFEILLDPNSEADLLEKAANNLIVLGREEAGAERIFQNNGVA 182

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1NXC5 UNC45B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 6.7e-25, P = 6.7e-25
 Identities = 73/203 (35%), Positives = 115/203 (56%)

Query:     6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
             M D  +LKE GN  F+  DYE A   YT+A+K+  + + + A   +NRAA +LK+ +  K
Sbjct:    20 MEDPIQLKEEGNKYFQASDYERAAQSYTQAMKLNKDRALQ-AVLYRNRAACFLKREEYAK 78

Query:    66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
                D S++++I   D KAL+RR QA E +GK ++A+ DA+    +EP NK  Q  L RL 
Sbjct:    79 AASDASRAIDINSSDIKALYRRSQALEKLGKLDQAFKDAQKCATMEPHNKNFQETLRRLG 138

Query:   126 AIVTKRMQENEQL--QNKVHNMFKYVFDTS---APMDKRVTAVNNLVVLAREMSGAEMLL 180
             A + +++   E+   Q+ V   +   F  S   +  +KR  A NNL+VL RE +GAE + 
Sbjct:   139 ADIQEKVNPGERYWAQDPVGVSWAISFLLSGKNSEKEKREKAANNLIVLGREEAGAERIF 198

Query:   181 KSGVAKQINTLLKCETNEEIYLA 203
             ++     +  L++ + N E+ LA
Sbjct:   199 QNNGVSLLLQLIETK-NAELVLA 220

GO:0005829 "cytosol" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	206
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-16
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	7e-14
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	1e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.003
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
             L   GN  +K GDY+ AL++Y KAL++      + A    N AA Y K  + ++ +ED
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             K+LE+ PD+ KA +    AY  +GK+EEA   
Sbjct: 57  YEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA 90

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 69.3 bits (169), Expect = 7e-14
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           KLKE GN A++  D+  A+  Y+KA+     E         NRAA +      +KV+ED 
Sbjct: 129 KLKEKGNKAYRNKDFNKAIKLYSKAI-----ECKPDPVYYSNRAACHNALGDWEKVVEDT 183

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-TNKAIQPVLSRLFAIVT 129
           + +LE+ PD  KAL RR  AY+ +GK+ +A  D      ++   N+     + RL     
Sbjct: 184 TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---- 239

Query: 130 KRMQENEQLQNKVHNMFK 147
                 +  ++K   + +
Sbjct: 240 -----KKFAESKAKEILE 252

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 7  NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-DK 65
          ++   LK  GN+ FK GDY+ A++ Y KAL++      + A    N A  YLK  ++ ++
Sbjct: 1  DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEE 56

Query: 66 VIEDCSKSLEIVP 78
           +ED  K+LE+ P
Sbjct: 57 ALEDLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.4 bits (121), Expect = 7e-09
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTD 103
           + A  LKN      K    D+ IE   K+LE+ PD+ +A +    AY  +GK +EEA  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 104 AKHIHRVEP 112
            +    ++P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 49  CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
            L N   +Y K    D+ +E   K+LE+ PD+  A +    AY  +GK+EEA  D +   
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 109 RVEPTN 114
            ++P N
Sbjct: 62  ELDPDN 67

Length = 100

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 15  SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74
            G SA   G+Y  AL+ Y +ALK+  E+ ++R+  L N   +Y    ++DK +E   ++L
Sbjct: 41  DGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL 99

Query: 75  EIVPDDPKAL 84
           E+ P  P AL
Sbjct: 100 ELNPKQPSAL 109

Length = 172

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 16 GNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
               + GDY+ AL+   KAL++     E+  E A  L N A +YL     D+ +E   K
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 73 SLEI 76
          +L +
Sbjct: 72 ALAL 75

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 20  FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79
           +K G YE AL+ Y KAL++  +     A    N    Y K  + ++ +E   K+LE+ P+
Sbjct: 45  YKLGKYEEALEDYEKALELDPDN----AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G +    GD   A+  + K L +  +     A  L   A  Y       K I    ++LE
Sbjct: 608 GRAQLAAGDLNKAVSSFKKLLALQPDS----ALALLLLADAYAVMKNYAKAITSLKRALE 663

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
           + PD+ +A     Q   A  + E A   AK + +  P       +   L+ 
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
                  L  +G S ++ G+ E A  +  + LK  A  SH+    L   A++ L+  + D
Sbjct: 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKY-APNSHQARRLL---ASIQLRLGRVD 346

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + I   S +L + PDDP AL    +AY A+G FE+A
Sbjct: 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
             L++    AF   D+  A+D YT+A+    +     A    +RA   +K     + + D
Sbjct: 3   KDLEDKAKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVAD 58

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            +K++E+ P   KA  R+  A   + +++ A
Sbjct: 59  ANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89

Length = 356

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 34.7 bits (81), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
          A  L N    YLK  + D+ +E   K+LE+ P++
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.3 bits (80), Expect = 0.002
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
          A  L N    YLK    D+ +E   K+LE+ P++
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +A + GDY+ AL     AL          A  L       L+Q +  +       +L 
Sbjct: 4  ARAALRAGDYDEALAALEAALA----RYPLAAEALLLLGEALLRQGRLAEAAALLRAALA 59

Query: 76 IVPDDP 81
            PDDP
Sbjct: 60 ADPDDP 65

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
            D  +   +  + ++ GDYE AL+ Y KAL+    E +E A  L    A+     + ++ 
Sbjct: 128 PDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEA 186

Query: 67  IEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
           +E   K+L++ PD D +AL      Y  +GK+EEA    +    ++P N      L+ L 
Sbjct: 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246

Query: 126 A 126
            
Sbjct: 247 L 247

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG4626|consensus	966		99.88
KOG1126|consensus	638		99.87
KOG0548|consensus	539		99.84
PRK15359	144	type III secretion system chaperone protein SscB;	99.83
KOG4626|consensus	966		99.83
KOG0553|consensus	304		99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG1155|consensus	559		99.79
PRK12370	553	invasion protein regulator; Provisional	99.79
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.77
KOG0624|consensus	504		99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.76
KOG1155|consensus	559		99.75
PRK12370	553	invasion protein regulator; Provisional	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.73
KOG1126|consensus	638		99.73
KOG0547|consensus	606		99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.72
KOG0543|consensus	397		99.72
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.71
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.71
KOG0547|consensus	606		99.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.68
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.68
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.67
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.66
KOG4234|consensus	271		99.65
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.64
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.63
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.63
PLN02789	320	farnesyltranstransferase	99.63
KOG0548|consensus	539		99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.6
KOG1125|consensus	579		99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.59
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.58
PRK11189	296	lipoprotein NlpI; Provisional	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
KOG1173|consensus	611		99.55
KOG0550|consensus	486		99.55
KOG2002|consensus	1018		99.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.53
KOG2002|consensus	1018		99.53
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.52
KOG4648|consensus	536		99.52
KOG2003|consensus	840		99.52
PRK15331	165	chaperone protein SicA; Provisional	99.52
KOG1125|consensus	579		99.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.49
PLN02789	320	farnesyltranstransferase	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.48
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.47
KOG0550|consensus	486		99.47
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.46
KOG0624|consensus	504		99.46
KOG2076|consensus	895		99.45
KOG2076|consensus	895		99.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.44
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.43
PRK14574	822	hmsH outer membrane protein; Provisional	99.43
KOG1173|consensus	611		99.43
PRK10803	263	tol-pal system protein YbgF; Provisional	99.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.42
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.42
KOG0553|consensus	304		99.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.39
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.39
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.37
PRK14574	822	hmsH outer membrane protein; Provisional	99.37
KOG1840|consensus	508		99.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.36
KOG3060|consensus	289		99.36
PF13512	142	TPR_18: Tetratricopeptide repeat	99.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.35
KOG0551|consensus	390		99.33
KOG1129|consensus	478		99.33
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.3
KOG1156|consensus	700		99.28
KOG1840|consensus	508		99.27
KOG4162|consensus	799		99.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.27
KOG1156|consensus	700		99.26
KOG0545|consensus	329		99.26
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.26
PF12688	120	TPR_5: Tetratrico peptide repeat	99.25
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.23
KOG4162|consensus	799		99.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.21
KOG1128|consensus	777		99.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.2
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.19
KOG0376|consensus	476		99.19
KOG1129|consensus	478		99.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.18
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.18
PRK11906	458	transcriptional regulator; Provisional	99.18
KOG4642|consensus	284		99.18
PF13371	73	TPR_9: Tetratricopeptide repeat	99.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.16
KOG1174|consensus	564		99.15
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.14
PF13371	73	TPR_9: Tetratricopeptide repeat	99.14
KOG3060|consensus	289		99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.1
KOG0495|consensus	913		99.1
PRK15331	165	chaperone protein SicA; Provisional	99.1
KOG1128|consensus	777		99.09
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.09
KOG1174|consensus	564		99.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.08
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.07
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.05
KOG1127|consensus	1238		99.03
KOG4555|consensus	175		99.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.03
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.0
PRK11906	458	transcriptional regulator; Provisional	99.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.0
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.99
KOG0495|consensus	913		98.98
KOG2003|consensus	840		98.95
KOG0543|consensus	397		98.94
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.93
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.91
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.9
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.89
KOG1127|consensus	1238		98.88
PRK10803	263	tol-pal system protein YbgF; Provisional	98.88
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.8
KOG2376|consensus	652		98.79
KOG1308|consensus	377		98.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.67
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.66
PLN03218	1060	maturation of RBCL 1; Provisional	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.66
PLN03218	1060	maturation of RBCL 1; Provisional	98.65
KOG4648|consensus	536		98.64
PF12688	120	TPR_5: Tetratrico peptide repeat	98.62
KOG4234|consensus	271		98.62
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.62
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.56
PF13428	44	TPR_14: Tetratricopeptide repeat	98.55
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.53
PF13431	34	TPR_17: Tetratricopeptide repeat	98.53
PF13428	44	TPR_14: Tetratricopeptide repeat	98.5
PLN03077	857	Protein ECB2; Provisional	98.5
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.45
KOG1130|consensus	639		98.43
PF13512	142	TPR_18: Tetratricopeptide repeat	98.42
KOG3785|consensus	557		98.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.42
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.41
KOG1130|consensus	639		98.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.39
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
KOG4340|consensus	459		98.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.33
KOG3785|consensus	557		98.32
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.31
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.31
KOG4642|consensus	284		98.3
PLN03077	857	Protein ECB2; Provisional	98.29
KOG1915|consensus	677		98.28
KOG4555|consensus	175		98.27
KOG2053|consensus	932		98.21
KOG1310|consensus	758		98.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.12
KOG2796|consensus	366		98.09
KOG4340|consensus	459		98.08
KOG2053|consensus	932		98.08
PF13431	34	TPR_17: Tetratricopeptide repeat	98.08
KOG2376|consensus	652		98.07
PRK10941	269	hypothetical protein; Provisional	98.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.99
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.97
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.94
PRK04841	903	transcriptional regulator MalT; Provisional	97.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.91
KOG3081|consensus	299		97.87
KOG0551|consensus	390		97.83
KOG1915|consensus	677		97.8
KOG3824|consensus	472		97.8
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.79
KOG0376|consensus	476		97.78
KOG4507|consensus	886		97.78
KOG3081|consensus	299		97.76
KOG1070|consensus	1710		97.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.74
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.73
PRK04841	903	transcriptional regulator MalT; Provisional	97.73
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.69
KOG2610|consensus	491		97.69
KOG2796|consensus	366		97.66
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.66
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.64
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.61
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.6
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.58
KOG2471|consensus	696		97.57
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.56
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.55
KOG2047|consensus	835		97.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.51
KOG0545|consensus	329		97.5
KOG2610|consensus	491		97.49
KOG1941|consensus	518		97.49
KOG0546|consensus	372		97.49
PRK10941	269	hypothetical protein; Provisional	97.47
KOG4507|consensus	886		97.45
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.44
KOG1586|consensus	288		97.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.44
KOG1585|consensus	308		97.43
KOG1941|consensus	518		97.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.36
KOG1585|consensus	308		97.36
KOG3364|consensus	149		97.36
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.33
KOG2396|consensus	568		97.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.31
KOG1070|consensus	1710		97.31
KOG1308|consensus	377		97.27
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.2
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.2
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.15
KOG3824|consensus	472		97.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.08
COG2912	269	Uncharacterized conserved protein [Function unknow	97.06
KOG4814|consensus	872		97.03
KOG2471|consensus	696		97.02
KOG2047|consensus	835		97.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.87
KOG3617|consensus	1416		96.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.82
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.79
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.78
KOG4151|consensus	748		96.75
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.74
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.71
KOG1550|consensus	552		96.63
KOG3364|consensus	149		96.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.57
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.39
KOG3617|consensus	1416		96.35
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.32
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.31
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.3
KOG1586|consensus	288		96.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.28
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.27
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.26
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.17
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.16
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.14
KOG0530|consensus	318		96.07
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.96
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.86
KOG1550|consensus	552		95.8
COG2912	269	Uncharacterized conserved protein [Function unknow	95.76
KOG1914|consensus	656		95.72
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.45
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.37
KOG2300|consensus	629		95.37
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.36
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.3
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.28
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.23
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.18
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.15
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.07
KOG2300|consensus	629		95.0
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.97
KOG2041|consensus	1189		94.97
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.87
KOG0686|consensus	466		94.87
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.82
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.71
KOG4814|consensus	872		94.62
KOG0530|consensus	318		94.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.58
KOG2396|consensus	568		94.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.5
KOG0529|consensus	421		94.45
COG3947	361	Response regulator containing CheY-like receiver a	94.4
KOG1839|consensus	1236		94.36
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.23
KOG1258|consensus	577		93.92
KOG0529|consensus	421		93.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.77
KOG0985|consensus	1666		93.74
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.63
KOG1310|consensus	758		93.62
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.59
KOG1839|consensus	1236		93.52
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.49
KOG3807|consensus	556		93.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.2
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.12
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.84
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.83
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.81
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.68
KOG2041|consensus	1189		92.67
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.37
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.22
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.94
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.82
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.31
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.15
KOG1258|consensus	577		90.65
KOG3616|consensus	1636		90.57
COG3947	361	Response regulator containing CheY-like receiver a	90.54
KOG2422|consensus	665		90.43
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.18
KOG0890|consensus	2382		89.91
KOG1914|consensus	656		89.72
KOG2422|consensus	665		89.53
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	89.2
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.09
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.03
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.57
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.54
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.39
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.55
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.35
KOG3783|consensus	546		87.15
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.84
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.24
PHA02537	230	M terminase endonuclease subunit; Provisional	86.01
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.98
KOG0546|consensus	372		85.0
KOG0985|consensus	1666		84.92
PF12854	34	PPR_1: PPR repeat	84.77
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.67
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.63
KOG2581|consensus	493		84.18
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.28
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.76
PF12854	34	PPR_1: PPR repeat	82.58
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	82.42
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.83
KOG3783|consensus	546		81.3
PRK11619	644	lytic murein transglycosylase; Provisional	81.15
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.91
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	80.7
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.07

>KOG4626|consensus

Probab=99.88  E-value=2.2e-22  Score=165.83  Aligned_cols=167  Identities=16%  Similarity=0.168  Sum_probs=154.4

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      |++++|+...+++++|++|-..+.|+.|+.+|.+|+.+. |+   ++.++.++|..|+.+|..+-|+..|+++++++|.+
T Consensus       244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F  319 (966)
T KOG4626|consen  244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF  319 (966)
T ss_pred             hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence            578999999999999999999999999999999999999 99   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      +++|.++|.++...|+..+|+.+|.+++.+.|+++++..+++.++.+.+..+.+..        +|.++++ .|.-....
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~--------ly~~al~v~p~~aaa~  391 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR--------LYLKALEVFPEFAAAH  391 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH--------HHHHHHhhChhhhhhh
Confidence            99999999999999999999999999999999999999999999999988888555        7888887 67777777


Q ss_pred             HHHHhhhhHhcccchhhHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..++..|-++|+.++|+.+|
T Consensus       392 nNLa~i~kqqgnl~~Ai~~Y  411 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCY  411 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHH
Confidence            88888888888888887776

>KOG1126|consensus

Probab=99.87  E-value=1.6e-21  Score=161.52  Aligned_cols=174  Identities=17%  Similarity=0.205  Sum_probs=164.9

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++.+|+.++.|...|++|-.+++++.||++|++|+.++ |+   .+.+|..+|.-+.....|+.|..+|+.|+.++|.+.
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            56789999999999999999999999999999999999 98   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      .|||.+|.+|.++++++.|.-.|++|+.++|.+..+...++..+.+++..++        +..+|++|+. +|.+.-.+.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~--------AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK--------ALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH--------HHHHHHHHHhcCCCCchhHH
Confidence            9999999999999999999999999999999999999999999999998888        6669999999 899999999


Q ss_pred             HHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      ..+..+..++++++|+..+      +.+.++..
T Consensus       562 ~~~~il~~~~~~~eal~~L------EeLk~~vP  588 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQEL------EELKELVP  588 (638)
T ss_pred             HHHHHHHhhcchHHHHHHH------HHHHHhCc
Confidence            9999999999999999999      66655555

>KOG0548|consensus

Probab=99.84  E-value=1.1e-19  Score=147.60  Aligned_cols=178  Identities=24%  Similarity=0.333  Sum_probs=155.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|..+......|+.+|+.|+|..|+..|.++|..+ |+   ++.+|.|+|.||.++|.+..|+.+++.+++++|++..+
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE---DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            467788899999999999999999999999999999 99   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      |++.|.++..+.+|+.|.+.|+.+++++|++..+...+.++.........        .+...++... ++.........
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~--------~ee~~~r~~~dpev~~il~d~~  500 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDET--------PEETKRRAMADPEVQAILQDPA  500 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCC--------HHHHHHhhccCHHHHHHHcCHH
Confidence            99999999999999999999999999999999999999998876533322        2234555555 44555555667


Q ss_pred             HhhhhHhcccchhhHHHHhcch-HHHHHHHhc
Q psy1039         163 VNNLVVLAREMSGAEMLLKSGV-AKQINTLLK  193 (206)
Q Consensus       163 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~  193 (206)
                      ++..+.+.+..-|....|++|+ +.+|+++++
T Consensus       501 m~~~l~q~q~~pa~~~~~~n~~v~~ki~~l~~  532 (539)
T KOG0548|consen  501 MRQILEQMQENPALQEHLKNPMVMQKIEKLIS  532 (539)
T ss_pred             HHHHHHHHHhCHHHHHHHhccHHHHHHHHHHH
Confidence            7777777777669999999999 999999988

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.83  E-value=2.2e-19  Score=127.61  Aligned_cols=121  Identities=11%  Similarity=0.148  Sum_probs=113.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++.+|++   ++..|..++..|++++|+.+|++++..+ |.   +..++.++|.++...|++++|+..|++++.++|+++
T Consensus        20 l~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         20 LSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-PW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            4566664   6789999999999999999999999999 99   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .+++++|.++..+|++++|+..|++++.+.|+++......+.+...+.
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888776554

>KOG4626|consensus

Probab=99.83  E-value=2.6e-20  Score=153.76  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=94.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +.+.|+++.++.++|.+|+.+|..+-||.+|++++++. |+   ...++.++|.++-..|+..+|..+|++++.++|.++
T Consensus       279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha  354 (966)
T KOG4626|consen  279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA  354 (966)
T ss_pred             HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence            34455555555555555555555555555555555555 55   555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      ++++++|.++..+|.+++|...|+++++..|+...++.+++.++...++..+        +..+|+.++. .|.-.+...
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~--------Ai~~YkealrI~P~fAda~~  426 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD--------AIMCYKEALRIKPTFADALS  426 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH--------HHHHHHHHHhcCchHHHHHH
Confidence            5555555555555555555555555555555555555555555555555444        2235555555 455555555


Q ss_pred             HHHhhhhHhcccchhhHHHH
Q psy1039         161 TAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ..++.|-++|+-++|++++.
T Consensus       427 NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHH
Confidence            55555555555555555554

>KOG0553|consensus

Probab=99.83  E-value=8.4e-20  Score=139.43  Aligned_cols=123  Identities=32%  Similarity=0.430  Sum_probs=115.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      ..-++.+...|+-+++.++|++|+..|.+||.++ |+   ++.+|.++|.+|.++|.++.|+++|+.++.+||...++|.
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~  153 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG  153 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence            3467889999999999999999999999999999 99   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  132 (206)
                      ++|.+|..+|++.+|++.|+++++++|++...+..|..+...+++..
T Consensus       154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999988887776665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=1.3e-18  Score=150.67  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=112.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+....+..+|.++...|++++|+..|+++++.+ |+   ++.+++.+|.+++..|++++|+.+|++++.++|++.
T Consensus       358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            34455556666666666666666666666666666666 65   566666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ----------------------  139 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------  139 (206)
                      .+++.+|.++..+|++++|+..|++++...|+++.+...++.++...++..++...++                      
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence            6666666666666666666666666666666666666666666555554433321111                      


Q ss_pred             -----------HHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         140 -----------NKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       140 -----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                                 ..+..++++++. +|.+......++.++...|++++|+..+
T Consensus       514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~  565 (615)
T TIGR00990       514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF  565 (615)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence                       124556777776 6777778888999999999999998887

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=1.1e-18  Score=151.09  Aligned_cols=163  Identities=18%  Similarity=0.124  Sum_probs=153.8

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|+.+..+..+|.+++..|++++|+..|+++++++ |+   ....|..+|.++...|++++|+..|+++++++|+++.++
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  402 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY  402 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            58889999999999999999999999999999999 98   889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +.+|.++...|++++|+.+|++++.++|++..++..++.++...++...        +...|++++. .|.+.......+
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e--------A~~~~~~al~~~P~~~~~~~~lg  474 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS--------SMATFRRCKKNFPEAPDVYNYYG  474 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999999999999999999999888888        4558888887 788899999999


Q ss_pred             hhhhHhcccchhhHHH
Q psy1039         164 NNLVVLAREMSGAEML  179 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~  179 (206)
                      .++...|++++|...+
T Consensus       475 ~~~~~~g~~~~A~~~~  490 (615)
T TIGR00990       475 ELLLDQNKFDEAIEKF  490 (615)
T ss_pred             HHHHHccCHHHHHHHH
Confidence            9999999999988776

>KOG1155|consensus

Probab=99.79  E-value=1.3e-17  Score=133.78  Aligned_cols=173  Identities=13%  Similarity=0.097  Sum_probs=149.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ||++||....+|-.+|+.|+...+...|++.|++|++++ |.   +..+|+++|.+|..++.+-=|+-+|++|+++.|.+
T Consensus       356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~---DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR---DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch---hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            578999999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRV  160 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (206)
                      +..|..+|.||.++++.++|+++|.+++.....+..+...++.++..+++..++...+..-+......-...|.....+.
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~  511 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL  511 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988665333222222111111233445555


Q ss_pred             HHHhhhhHhcccchhhH
Q psy1039         161 TAVNNLVVLAREMSGAE  177 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~  177 (206)
                      =+++.+...+++++|..
T Consensus       512 fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  512 FLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHhhcchHHHHH
Confidence            58888888888887765

>PRK12370 invasion protein regulator; Provisional

Probab=99.79  E-value=6.8e-18  Score=144.31  Aligned_cols=168  Identities=10%  Similarity=-0.046  Sum_probs=144.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS   71 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   71 (206)
                      ++..+|+++.++..+|.++...         +++++|+..++++++++ |+   ++.++..+|.++...|++++|+..|+
T Consensus       287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~  362 (553)
T PRK12370        287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HN---NPQALGLLGLINTIHSEYIVGSLLFK  362 (553)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4678999999999999877643         34899999999999999 99   89999999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...+..+....++..+        +...+++++.
T Consensus       363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee--------A~~~~~~~l~  434 (553)
T PRK12370        363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD--------AIRLGDELRS  434 (553)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH--------HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998776665555555555544        4457777765


Q ss_pred             --CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         152 --TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                        +|........++.++..+|++++|...+-
T Consensus       435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~  465 (553)
T PRK12370        435 QHLQDNPILLSMQVMFLSLKGKHELARKLTK  465 (553)
T ss_pred             hccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence              46677778889999999999988888763

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.77  E-value=3.5e-17  Score=114.95  Aligned_cols=122  Identities=16%  Similarity=0.244  Sum_probs=113.8

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|++....+.+|..++..|++++|+..|++++..+ |.   +...+.++|.++...|++++|+..+++++.++|++
T Consensus         9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      +..++.+|.++...|++++|...|+++++++|++.........+..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999876655554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624|consensus

Probab=99.77  E-value=4.7e-17  Score=126.59  Aligned_cols=192  Identities=20%  Similarity=0.217  Sum_probs=162.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|.+.+..+.+|..++..|++.+|+..|..|++.+ |+   +..+++.+|.+|+.+|+..-|+.++.+++++.|++..+
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A  108 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA  108 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-ch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence            467889999999999999999999999999999999 99   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCC
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQL----QNKVHNMFKYVFD-TSAP  155 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~  155 (206)
                      ...+|.++..+|.+++|...|..++..+|++.   ++...+..+........+....+    ...+..+....++ .|.+
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence            99999999999999999999999999999664   44444443333222222221111    1246778888898 8999


Q ss_pred             hhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039         156 MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT  205 (206)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (206)
                      ...+...+.||..-|....|+..+      +.+.+|-+++++-.+.++.+
T Consensus       189 a~l~~~Rakc~i~~~e~k~AI~Dl------k~askLs~DnTe~~ykis~L  232 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKKAIHDL------KQASKLSQDNTEGHYKISQL  232 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHH------HHHHhccccchHHHHHHHHH
Confidence            999999999999999999999999      88888888666666666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.76  E-value=1.2e-16  Score=126.58  Aligned_cols=106  Identities=19%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..+..++.+|..+...|++++|+..|+++++++ |+   ++.+|.++|.++...|++++|+..|+++++++|++..++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALR-PD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            448889999999999999999999999999999 99   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                      +|.++...|++++|...++++++.+|+++.
T Consensus       138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999974

>KOG1155|consensus

Probab=99.75  E-value=7.1e-17  Score=129.51  Aligned_cols=164  Identities=15%  Similarity=0.131  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ++...-.|+.|...+++++|+.+|++|++++ |.   ...+|...|.-|+.+++.+.|++.|++|+.++|.+..+||.+|
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG  405 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PK---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG  405 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cc---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence            4455667899999999999999999999999 99   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (206)
                      .+|.-++-..=|.-+|+++...-|+++.++..+|.++.++.+..+        +..+|++++. .+.+......+|..+-
T Consensus       406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e--------AiKCykrai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE--------AIKCYKRAILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH--------HHHHHHHHHhccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888        5559999999 6778899999999999


Q ss_pred             HhcccchhhHHHHhcch
Q psy1039         168 VLAREMSGAEMLLKSGV  184 (206)
Q Consensus       168 ~~~~~~~a~~~~~~~~~  184 (206)
                      ++++..+|...+.|--+
T Consensus       478 ~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  478 ELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            99999999999966544

>PRK12370 invasion protein regulator; Provisional

Probab=99.75  E-value=8.9e-17  Score=137.48  Aligned_cols=159  Identities=9%  Similarity=0.015  Sum_probs=140.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      |+..+|+++.++..+|.++...|++++|+..|+++++++ |+   ++.+++.+|.++...|++++|+..++++++++|.+
T Consensus       330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999999999 99   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      +.+++.++.+++..|++++|+..+++++... |+++.++..++.++...++..+        +...++++.. .|.....
T Consensus       406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e--------A~~~~~~~~~~~~~~~~~  477 (553)
T PRK12370        406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHEL--------ARKLTKEISTQEITGLIA  477 (553)
T ss_pred             hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHH--------HHHHHHHhhhccchhHHH
Confidence            9888888888899999999999999999875 7889999999999988888877        4446777666 5666666


Q ss_pred             hHHHHhhhhHhcc
Q psy1039         159 RVTAVNNLVVLAR  171 (206)
Q Consensus       159 ~~~~~~~~~~~~~  171 (206)
                      ...++..++..|+
T Consensus       478 ~~~l~~~~~~~g~  490 (553)
T PRK12370        478 VNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHHHHHhccHH
Confidence            7777777777764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.75  E-value=5.7e-16  Score=116.99  Aligned_cols=161  Identities=12%  Similarity=0.075  Sum_probs=143.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..+..++.+|..++..|++++|+..++++++.. |+   +...+..+|.++...|++++|+..++++++..|.+..+++.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  104 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN  104 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            457889999999999999999999999999999 98   78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +|.++...|++++|...+++++...  |........++.++...++...        +..++.+++. .|.+......++
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~la  176 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK--------AEKYLTRALQIDPQRPESLLELA  176 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcCChHHHHHHH
Confidence            9999999999999999999999853  4556677788888888777777        4457888877 677788888999


Q ss_pred             hhhhHhcccchhhHHH
Q psy1039         164 NNLVVLAREMSGAEML  179 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~  179 (206)
                      .++...|++++|...+
T Consensus       177 ~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       177 ELYYLRGQYKDARAYL  192 (234)
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            9999999999888877

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.74  E-value=2.3e-16  Score=111.32  Aligned_cols=110  Identities=14%  Similarity=0.107  Sum_probs=103.7

Q ss_pred             ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           3 DNN-MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         3 ~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ..+ ++.-+.+|..|..++..|++++|...|+-.+.++ |.   ++..|+++|.|+..+|+|.+|+..|.+++.++|+++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            345 7888999999999999999999999999999999 99   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                      .++++.|.|++..|+.+.|.+.|+.++.....++.
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            99999999999999999999999999998754433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.73  E-value=4e-16  Score=117.82  Aligned_cols=166  Identities=13%  Similarity=0.167  Sum_probs=145.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~   79 (206)
                      +..+|++...+..+|..+...|++++|+..|+++++.. |.   +...+.++|.++...|++++|+..|.+++...  |.
T Consensus        58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  133 (234)
T TIGR02521        58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ  133 (234)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            45678899999999999999999999999999999999 98   78899999999999999999999999999864  55


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      ....++.+|.++...|++++|...+.+++..+|+++.+...++.++...++..++.        .+++++.. .|.+...
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~--------~~~~~~~~~~~~~~~~  205 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR--------AYLERYQQTYNQTAES  205 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH--------HHHHHHHHhCCCCHHH
Confidence            67889999999999999999999999999999999999999999998888877744        46666666 4666777


Q ss_pred             hHHHHhhhhHhcccchhhHHH
Q psy1039         159 RVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       159 ~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ....+.++...|+.++|....
T Consensus       206 ~~~~~~~~~~~~~~~~a~~~~  226 (234)
T TIGR02521       206 LWLGIRIARALGDVAAAQRYG  226 (234)
T ss_pred             HHHHHHHHHHHhhHHHHHHHH
Confidence            777888888888888876654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.73  E-value=1.1e-16  Score=119.53  Aligned_cols=116  Identities=18%  Similarity=0.190  Sum_probs=107.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HHccC--HHHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQ--NDKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~l~p   78 (206)
                      +..+|++++.|..+|.++...|++++|+..|++++++. |+   +..++..+|.++ ...|+  +++|...++++++++|
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            56799999999999999999999999999999999999 99   899999999975 67787  5999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +++.+++.+|.++...|++++|+..|+++++++|.+.+-...+
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            9999999999999999999999999999999999876655444

>KOG1126|consensus

Probab=99.73  E-value=7.9e-17  Score=133.88  Aligned_cols=151  Identities=16%  Similarity=0.301  Sum_probs=138.6

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ||..+|++-.+||.+|++|++.++++.|.-+|++|++++ |.   +..+...+|..+.++|+.++|+..|++|+.++|.+
T Consensus       481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~---nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PS---NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-cc---chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            578899999999999999999999999999999999999 99   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      +-+.|.+|.+++.++++++|...++..-++-|++..++..++.++.++++...        +...|..|.+ +|.-.++.
T Consensus       557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--------Al~~f~~A~~ldpkg~~i~  628 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--------ALLHFSWALDLDPKGAQIQ  628 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--------HHHhhHHHhcCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999888        4459999998 55444444


Q ss_pred             HHHH
Q psy1039         160 VTAV  163 (206)
Q Consensus       160 ~~~~  163 (206)
                      ...+
T Consensus       629 ~k~~  632 (638)
T KOG1126|consen  629 IKAA  632 (638)
T ss_pred             HHHH
Confidence            4443

>KOG0547|consensus

Probab=99.73  E-value=2.3e-16  Score=127.33  Aligned_cols=171  Identities=15%  Similarity=0.136  Sum_probs=130.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ..++|+++..++.+|..++-.++|++|+.-|+++++++ |+   +.-.+..+|.+.++++++.++...|+.+.+..|..+
T Consensus       387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~  462 (606)
T KOG0547|consen  387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP  462 (606)
T ss_pred             HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            45678888888888888888888888888888888888 77   777778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                      +++...|.++...++|+.|++.|.+++.+.|.      ++.-...-+.+..+. ++..        .+.++.+++++ +|
T Consensus       463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~--------~a~~Ll~KA~e~Dp  534 (606)
T KOG0547|consen  463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN--------QAENLLRKAIELDP  534 (606)
T ss_pred             hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH--------HHHHHHHHHHccCc
Confidence            88888888888888888888888888888877      322222222222211 1112        36779999999 89


Q ss_pred             CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      .+......++...+++|+.++|++.+-++-.
T Consensus       535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999998865554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.72  E-value=7.7e-16  Score=113.81  Aligned_cols=161  Identities=17%  Similarity=0.051  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      .+.+...+|.-|+..|++..|...+++|++.+ |+   ...+|..+|..|.+.|+.+.|.+.|++|+.++|++.+++.+.
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            46788899999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  164 (206)
                      |.-++..|++++|...|++++..  .|..+..+.+++.+..+.++..+        ++.+|++++. +|........++.
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~--------A~~~l~raL~~dp~~~~~~l~~a~  181 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ--------AEEYLKRALELDPQFPPALLELAR  181 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh--------HHHHHHHHHHhCcCCChHHHHHHH
Confidence            99999999999999999999873  45667889999999988888888        4459999999 7888888999999


Q ss_pred             hhhHhcccchhhHHHH
Q psy1039         165 NLVVLAREMSGAEMLL  180 (206)
Q Consensus       165 ~~~~~~~~~~a~~~~~  180 (206)
                      .+...|++-.|...+.
T Consensus       182 ~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         182 LHYKAGDYAPARLYLE  197 (250)
T ss_pred             HHHhcccchHHHHHHH
Confidence            9999999977766663

>KOG0543|consensus

Probab=99.72  E-value=5.6e-16  Score=123.04  Aligned_cols=129  Identities=33%  Similarity=0.519  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      ..+......|+.+|+.|+|..|...|++++..- +.            ......++.|++.|+.++++|.+|+..|+++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345677889999999999999999999999865 32            12345578999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      +++|.|.+++|++|.++..+|+|+.|...|+++++++|+|..+...+..+..+.++...+++
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek  346 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK  346 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888887766544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=5e-16  Score=139.08  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~   97 (206)
                      .....|++++|+..|+++++++ |+    ...+.++|.++.++|++++|+..|++++.++|+++.++.++|.++...|++
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~-P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIA-PS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI  659 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            3333344444444444444444 43    334445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA  176 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~  176 (206)
                      ++|+..|+++++++|+++.++..++.++...++...        +..+|++++. .|....+....++......++..+.
T Consensus       660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e--------A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~  731 (987)
T PRK09782        660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA--------TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH  731 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence            555555555555555555555555555554444444        2234445444 4444455555555555544444444


Q ss_pred             HHH
Q psy1039         177 EML  179 (206)
Q Consensus       177 ~~~  179 (206)
                      +.+
T Consensus       732 ~~~  734 (987)
T PRK09782        732 EEV  734 (987)
T ss_pred             HHH
Confidence            444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.71  E-value=1.2e-15  Score=117.07  Aligned_cols=174  Identities=16%  Similarity=0.166  Sum_probs=138.1

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH-
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK-   82 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-   82 (206)
                      .++..+..++..|..++..|++++|+..|++++... |+.+....+++.+|.++...|++++|+..|+++++.+|+++. 
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            456788999999999999999999999999999999 874444578899999999999999999999999999998876 


Q ss_pred             --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q psy1039          83 --ALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM----------QENEQLQNKV  142 (206)
Q Consensus        83 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~  142 (206)
                        +++.+|.++...        |++++|++.+++++..+|++......+..+........          ...+.. ..+
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A  185 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY-VAA  185 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-HHH
Confidence              799999999987        89999999999999999999766544433222111100          000111 124


Q ss_pred             HHHHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         143 HNMFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       143 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ...|++++. .|   .....+...+.++...|++++|...+
T Consensus       186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            557777776 33   34678899999999999999998865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.71  E-value=4.9e-16  Score=125.99  Aligned_cols=116  Identities=20%  Similarity=0.359  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      .+...|..++..|+|++|+.+|.++++++ |+   +..+++++|.++..+|++++|+.++++++.++|+++.+++++|.+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~   79 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLD-PN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA   79 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            47788999999999999999999999999 99   899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        91 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      +..+|+|++|+..|++++.++|+++.+...++.+...+..
T Consensus        80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888777754

>KOG0547|consensus

Probab=99.71  E-value=5.4e-16  Score=125.23  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      -+.++...|..++-.|++-.|..-|+.+|.++ |.   ....|..+|.+|....+..+-..+|++|..++|.++++|+.+
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~---~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR  400 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PA---FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR  400 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cc---cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence            37788889999999999999999999999999 87   667788899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      |.+++-+++|++|+..|++++.++|++.-....+.-+..+.++...        .+..|+.+.. .|...+.-.-.++++
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~--------~m~~Fee~kkkFP~~~Evy~~fAeiL  472 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE--------SMKTFEEAKKKFPNCPEVYNLFAEIL  472 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            9999999999999999999999999998888888888777776666        4447777777 788888888999999


Q ss_pred             hHhcccchhhHHH
Q psy1039         167 VVLAREMSGAEML  179 (206)
Q Consensus       167 ~~~~~~~~a~~~~  179 (206)
                      ..+++|++|.+.|
T Consensus       473 tDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  473 TDQQQFDKAVKQY  485 (606)
T ss_pred             hhHHhHHHHHHHH
Confidence            9999999998888

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.70  E-value=1.1e-15  Score=132.96  Aligned_cols=158  Identities=13%  Similarity=0.125  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHhhhCCCCHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK----VIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .....|..+...|++++|+..|.+++... |+   +...+.++|.++...|++++    |+..|++++.++|++..++..
T Consensus       214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~  289 (656)
T PRK15174        214 SAGLAVDTLCAVGKYQEAIQTGESALARG-LD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTL  289 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            34556788889999999999999999998 88   78899999999999999986    899999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      +|.++...|++++|...+++++.++|+++.+...++.++...++..+        +...|++++. .|.........+.+
T Consensus       290 lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e--------A~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        290 YADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA--------ASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888877        4447788776 56666666667888


Q ss_pred             hhHhcccchhhHHHH
Q psy1039         166 LVVLAREMSGAEMLL  180 (206)
Q Consensus       166 ~~~~~~~~~a~~~~~  180 (206)
                      +...|++++|...+-
T Consensus       362 l~~~G~~deA~~~l~  376 (656)
T PRK15174        362 LLQAGKTSEAESVFE  376 (656)
T ss_pred             HHHCCCHHHHHHHHH
Confidence            999999999888874

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=9.2e-16  Score=141.06  Aligned_cols=177  Identities=15%  Similarity=0.128  Sum_probs=146.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHH-----------HHHHHHHHHHHHHHccCHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE-----------RATCLKNRAAVYLKQNQNDKVIED   69 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~   69 (206)
                      ++..+|+++..++.+|.+++..|++++|+.+|+++++.+ |+...           .......+|.++...|++++|+..
T Consensus       295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~  373 (1157)
T PRK11447        295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL  373 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            356789999999999999999999999999999999999 86211           012234568899999999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH-------------
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE-------------  136 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~-------------  136 (206)
                      |++++.++|++..+++.+|.++...|++++|++.|+++++++|++..+...++.++... ...++..             
T Consensus       374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~  452 (1157)
T PRK11447        374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSI  452 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888887775321 1110000             


Q ss_pred             ----------------------HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         137 ----------------------QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       137 ----------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                                            .....+...|++++. .|.+......++.++...|++++|...+
T Consensus       453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l  518 (1157)
T PRK11447        453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM  518 (1157)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                  001235678888888 7888999999999999999999888877

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=1.3e-15  Score=108.24  Aligned_cols=126  Identities=10%  Similarity=0.061  Sum_probs=113.9

Q ss_pred             HHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039          29 LDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        29 ~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  108 (206)
                      ..+|+++++++ |+   +   ++.+|.++...|++++|+..|.+++.++|.+..+++.+|.++...|++++|+..|++++
T Consensus        13 ~~~~~~al~~~-p~---~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLSVD-PE---T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHHcC-HH---H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35799999999 86   3   56789999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh
Q psy1039         109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL  169 (206)
Q Consensus       109 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (206)
                      .++|+++.++..++.++...++...        +...|++++. .|.+...+...+.+....
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~e--------Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGL--------AREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999888        5559999988 788888887777665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.68  E-value=2.6e-15  Score=130.72  Aligned_cols=168  Identities=11%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|+++.++..+|..+...|++++|+..|++++.+. |+   +..++..+|.++...|++++|+..+.+++..+|+++.+
T Consensus       105 ~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a  180 (656)
T PRK15174        105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM  180 (656)
T ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence            445555555555555555555555555555555555 54   44444444444444444444444444444444433332


Q ss_pred             HHHH----------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          84 LFRR----------------------------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        84 ~~~l----------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      ++..                                  +.++...|++++|+..+++++..+|+++.+...++.++...+
T Consensus       181 ~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G  260 (656)
T PRK15174        181 IATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG  260 (656)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            2111                                  223333334444444444444444444444444444444333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +...+.    ..+..+|++++. .|.+...+..++..+...|++++|...+
T Consensus       261 ~~~eA~----~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l  307 (656)
T PRK15174        261 RSREAK----LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLL  307 (656)
T ss_pred             CchhhH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            332210    013455666666 5666666666666666666666665554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.68  E-value=3.8e-15  Score=132.49  Aligned_cols=170  Identities=15%  Similarity=0.142  Sum_probs=146.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      ..|.++..+..+|..++..|++++|+..|.+++... |+   . ..+..++.++...|++++|+..+++++..+|+++.+
T Consensus       698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  772 (899)
T TIGR02917       698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PS---S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL  772 (899)
T ss_pred             hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CC---c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            456778888899999999999999999999999998 87   3 677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      ++.+|.++...|++++|...|++++..+|+++.+...++.++...++ .+        +..++++++. .|.+.......
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~--------A~~~~~~~~~~~~~~~~~~~~~  843 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR--------ALEYAEKALKLAPNIPAILDTL  843 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH--------HHHHHHHHHhhCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999888877766 44        4557777777 67778888888


Q ss_pred             HhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         163 VNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      +.++...|++++|.+.+      .++.++..
T Consensus       844 ~~~~~~~g~~~~A~~~~------~~a~~~~~  868 (899)
T TIGR02917       844 GWLLVEKGEADRALPLL------RKAVNIAP  868 (899)
T ss_pred             HHHHHHcCCHHHHHHHH------HHHHhhCC
Confidence            88999999999888887      66665544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.68  E-value=3.1e-15  Score=134.06  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ...++..|..+...|++++|+.+|++++... |+   ....+..++......|++++|+..|+++++++|+ ..+++.+|
T Consensus       542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~---~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA  616 (987)
T PRK09782        542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG---DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA  616 (987)
T ss_pred             cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            4457888999999999999999999999999 88   6777777777777889999999999999999996 99999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (206)
                      .++..+|++++|+..|++++.++|+++.++..++.++...++..+        +..+|++++. .|.+...+..++.++.
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee--------Ai~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ--------SREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888777        5558999888 7999999999999999


Q ss_pred             HhcccchhhHHH
Q psy1039         168 VLAREMSGAEML  179 (206)
Q Consensus       168 ~~~~~~~a~~~~  179 (206)
                      ..|++++|...+
T Consensus       689 ~lGd~~eA~~~l  700 (987)
T PRK09782        689 RLDDMAATQHYA  700 (987)
T ss_pred             HCCCHHHHHHHH
Confidence            999999998887

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.67  E-value=3.6e-15  Score=110.30  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=139.5

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VP   78 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p   78 (206)
                      ||..+|+...+|..++.+|...|+.+.|-+.|++|+.+. |+   +.+++.|.|.-+..+|+|++|...|++|+..  .|
T Consensus        61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~  136 (250)
T COG3063          61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN---NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG  136 (250)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence            578899999999999999999999999999999999999 99   9999999999999999999999999999964  34


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      .-.+++-++|.|..+.|+++.|..+|+++++++|+++.....+...+...++...+.        .++++... .+...+
T Consensus       137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar--------~~~~~~~~~~~~~A~  208 (250)
T COG3063         137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR--------LYLERYQQRGGAQAE  208 (250)
T ss_pred             CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH--------HHHHHHHhcccccHH
Confidence            667899999999999999999999999999999999999999999999888888744        47777666 455555


Q ss_pred             hhHHHHhhhhHhcccchh
Q psy1039         158 KRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       158 ~~~~~~~~~~~~~~~~~a  175 (206)
                      ......+.--..|+-+.+
T Consensus       209 sL~L~iriak~~gd~~~a  226 (250)
T COG3063         209 SLLLGIRIAKRLGDRAAA  226 (250)
T ss_pred             HHHHHHHHHHHhccHHHH
Confidence            444444444444554433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.66  E-value=6.5e-15  Score=131.04  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=151.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...|++ ..+..+|..+...|++++|+..++++++.. |+   +..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus       731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  805 (899)
T TIGR02917       731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN---DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV  805 (899)
T ss_pred             hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence            345655 678889999999999999999999999999 98   8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      ++..+|.++...|+ .+|+..+++++.+.|+++.....++.++...++..+        +..+|++++. .|.+..+...
T Consensus       806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------A~~~~~~a~~~~~~~~~~~~~  876 (899)
T TIGR02917       806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR--------ALPLLRKAVNIAPEAAAIRYH  876 (899)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCCCChHHHHH
Confidence            99999999999999 889999999999999999999999999988888887        5559999998 6889999999


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.++...|++++|.+.+
T Consensus       877 l~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       877 LALALLATGRKAEARKEL  894 (899)
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999999999887

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4234|consensus

Probab=99.65  E-value=8.3e-15  Score=106.34  Aligned_cols=129  Identities=37%  Similarity=0.578  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      ..+..+...|+-+|..|+|.+|...|..|+.++ |..  ...+.+|.++|.|+.++++++.|+..|.++++++|.+.+++
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            346678889999999999999999999999999 752  34567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      .++|.+|.++..|++|+..|+++++.+|....+...+.++-..+..+..+.+
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988887777666543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.65  E-value=2.1e-14  Score=117.72  Aligned_cols=169  Identities=12%  Similarity=0.085  Sum_probs=124.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +..+|++...+..+|..+...|++++|+..+++++... +.. ......+..+|.+|...|++++|+..|.++++.+|.+
T Consensus        62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~  140 (389)
T PRK11788         62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA  140 (389)
T ss_pred             HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence            45678888888888888888888888888888887753 221 1134567788888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-----IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA  154 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (206)
                      ..++..++.++...|++++|...+++++...|.+..     ....++.++...++...        +..+|++++. .|.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~al~~~p~  212 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA--------ARALLKKALAADPQ  212 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHhHCcC
Confidence            888888888888888888888888888887776533     22334444444444444        4457777776 566


Q ss_pred             ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         155 PMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .......++..+...|++++|.+.+
T Consensus       213 ~~~~~~~la~~~~~~g~~~~A~~~~  237 (389)
T PRK11788        213 CVRASILLGDLALAQGDYAAAIEAL  237 (389)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777788888888888888777765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.64  E-value=9.9e-15  Score=134.31  Aligned_cols=166  Identities=7%  Similarity=0.021  Sum_probs=111.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH--------
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS--------   73 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------   73 (206)
                      +..+|+++..++.+|.++...|++++|+..|++++... |+   ++..++.+|..+...+++++|+..++++        
T Consensus       488 l~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~  563 (1157)
T PRK11447        488 LALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN  563 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence            34455555566666666666666666666666666555 54   3444444444443444444433333221        


Q ss_pred             --------------------------------hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          74 --------------------------------LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        74 --------------------------------l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                                                      ++.+|.++..++.+|.++...|++++|+..|+++++.+|+++.+...+
T Consensus       564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~l  643 (1157)
T PRK11447        564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGL  643 (1157)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                                            123455555666778888888899999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +.++...++..+        +...++++.. .|.+......++.++...|++++|.+.+
T Consensus       644 a~~~~~~g~~~e--------A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  694 (1157)
T PRK11447        644 IEVDIAQGDLAA--------ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF  694 (1157)
T ss_pred             HHHHHHCCCHHH--------HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence            888888887777        4457777777 5777788888888888888888888777

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.63  E-value=2.1e-14  Score=124.57  Aligned_cols=136  Identities=7%  Similarity=-0.016  Sum_probs=129.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      ..|+++++++.+|.+....|.+++|+.+++.++++. |+   +..++.+++.++.+.+++++|+..+++++..+|++..+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~  156 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE  156 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence            357789999999999999999999999999999999 99   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++.+|.++..+|++++|...|++++..+|+++.++..++.++...++.+.        +...|+++++
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~--------A~~~~~~a~~  216 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR--------ARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888        4458888887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.63  E-value=3.9e-14  Score=116.10  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=112.4

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      .+|.+...+..++.++...|++++|+..+.+++... |...  .....+..+|..+...|++++|+..|+++++.+|++.
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        136 EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            345556666666666666777777777666666665 5311  1123455677777777778888888887777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      .+++.+|.++...|++++|...+++++..+|.+ ..+...++.++...++..+        +...++++.. .|.. ...
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~--------A~~~l~~~~~~~p~~-~~~  285 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE--------GLEFLRRALEEYPGA-DLL  285 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCc-hHH
Confidence            777777888888888888888888777777765 3445566666666665555        3346666666 4443 334


Q ss_pred             HHHHhhhhHhcccchhhHHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ...+..+...|++++|...+.
T Consensus       286 ~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        286 LALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHH
Confidence            778888888888888777663

>PLN02789 farnesyltranstransferase

Probab=99.63  E-value=2.5e-14  Score=113.96  Aligned_cols=163  Identities=12%  Similarity=0.012  Sum_probs=137.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHhhhC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN--DKVIEDCSKSLEIV   77 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~l~   77 (206)
                      +|..+|++..+|..+|.++...| ++++++..+.++++.+ |+   +..+|.+++.++..+|+.  .+++..++++++++
T Consensus        63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pk---nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PK---NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Cc---chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            36789999999999999999999 6899999999999999 99   899999999999999874  78899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (206)
Q Consensus        78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                      |.|..+|..+|.++..+|+|++|++.+.++++.+|.|..++...+.+...++...... ........+..+++. .|.+.
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~-~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE-AMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc-ccHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999999999999999999998876552211100 011123446656666 78888


Q ss_pred             hhhHHHHhhhhH
Q psy1039         157 DKRVTAVNNLVV  168 (206)
Q Consensus       157 ~~~~~~~~~~~~  168 (206)
                      ..+.-...++..
T Consensus       218 SaW~Yl~~ll~~  229 (320)
T PLN02789        218 SPWRYLRGLFKD  229 (320)
T ss_pred             CHHHHHHHHHhc
Confidence            888777777766

>KOG0548|consensus

Probab=99.63  E-value=1.2e-14  Score=118.66  Aligned_cols=176  Identities=23%  Similarity=0.301  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ......|+..+..|+|+.|+.+|..+|.++ |.   ++.+|.++..+|..+|+|.+|+++..+.++++|+.++.|.++|.
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga   78 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLS-PT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA   78 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccC-CC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence            346678999999999999999999999999 98   89999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhhH-HHHhhhh
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTS-APMDKRV-TAVNNLV  167 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  167 (206)
                      ++..+|+|++|+..|.+.++.+|+|......+..+........+.    .. --.++.+....| ....... .....+.
T Consensus        79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~----~~-~p~~~~~l~~~p~t~~~~~~~~~~~~l~  153 (539)
T KOG0548|consen   79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQL----FT-KPYFHEKLANLPLTNYSLSDPAYVKILE  153 (539)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhh----cc-CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence            999999999999999999999999999999999888322222111    10 112333333323 2222222 2333444


Q ss_pred             HhcccchhhHHHHhcch-HHHHHHHhcc
Q psy1039         168 VLAREMSGAEMLLKSGV-AKQINTLLKC  194 (206)
Q Consensus       168 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~  194 (206)
                      ...+.+..+.-++.+|- ++....++.+
T Consensus       154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~  181 (539)
T KOG0548|consen  154 IIQKNPTSLKLYLNDPRLMKADGQLKGV  181 (539)
T ss_pred             HhhcCcHhhhcccccHHHHHHHHHHhcC
Confidence            44555888888888776 6666666653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=8.7e-15  Score=115.17  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .++..+......+...|+++++...+..+.... + .+.++..|..+|.++.+.|++++|+..|+++++++|+++.+...
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~  185 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-A-APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA  185 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            456667777888899999999999999977543 1 11278889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      ++.++...|+++++...++......|+++..+..++.++..+++..+        +..+|+++.. .|.+..+....+.+
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~--------Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE--------ALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH--------HHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc--------ccccccccccccccccccccccccc
Confidence            99999999999999999999888889999999999999999999888        5558888888 89999999999999


Q ss_pred             hhHhcccchhhHHH
Q psy1039         166 LVVLAREMSGAEML  179 (206)
Q Consensus       166 ~~~~~~~~~a~~~~  179 (206)
                      +...|+.++|...+
T Consensus       258 l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  258 LEQAGRKDEALRLR  271 (280)
T ss_dssp             HT------------
T ss_pred             cccccccccccccc
Confidence            99999999999877

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.60  E-value=4.6e-14  Score=96.44  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF   85 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~   85 (206)
                      ++.++..|..++..|++++|+..|.+++... |+.+....+++.+|.+++..|++++|+..|++++..+|++   +.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            4678999999999999999999999999998 8743346789999999999999999999999999999885   67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      .+|.++..+|++++|...+++++...|+++.+....
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999999999999999999999999987765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1125|consensus

Probab=99.60  E-value=1.8e-14  Score=118.46  Aligned_cols=169  Identities=13%  Similarity=0.159  Sum_probs=145.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----   76 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----   76 (206)
                      |++++|.++++|..+|.+....++=..||.-++++++++ |+   +..++..||.+|...|.=.+|+..+.+=++.    
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~---NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y  386 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PT---NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY  386 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence            467899999999999999999999999999999999999 99   8999999999998777766666666554433    


Q ss_pred             -------------------------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          77 -------------------------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        77 -------------------------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                                                           +|  .++++...||.+|...|+|+.|+.+|+.|+...|+|..+
T Consensus       387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l  466 (579)
T KOG1125|consen  387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL  466 (579)
T ss_pred             hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence                                                 33  346678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         118 QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      |+.+|-...--.+..+        +...|+++++ .|.-.+.|..+|...+.+|-|++|.++++.
T Consensus       467 WNRLGAtLAN~~~s~E--------AIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEE--------AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHhhHHhcCCcccHH--------HHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            9999888765555555        5568999999 799999999999999999999999998864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.59  E-value=6.8e-14  Score=104.51  Aligned_cols=118  Identities=11%  Similarity=0.121  Sum_probs=110.0

Q ss_pred             cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-HHcCC--HH
Q psy1039          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY-EAIGK--FE   98 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~-~~~g~--~~   98 (206)
                      .++.++++..+++++..+ |+   +...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  ++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            456688999999999999 99   8999999999999999999999999999999999999999999985 67788  59


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +|...++++++.+|+++.++..++..+...++..+        +..+++++++
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~--------Ai~~~~~aL~  172 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQ--------AIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH--------HHHHHHHHHh
Confidence            99999999999999999999999999999999988        5559999888

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.58  E-value=1.3e-13  Score=100.88  Aligned_cols=111  Identities=30%  Similarity=0.466  Sum_probs=99.0

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..++..+..++.+|..+...|++++|+.+|++++... |+......++.++|.++...|++++|+..+.+++.++|.+..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            4566788899999999999999999999999999987 753334678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCC
Q psy1039          83 ALFRRCQAYEAIGK--------------FEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        83 ~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~  114 (206)
                      ++..+|.++...|+              +.+|.+.+++++..+|++
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999988              577788888888888876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.58  E-value=1.6e-13  Score=103.44  Aligned_cols=164  Identities=13%  Similarity=0.146  Sum_probs=141.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|++... ......+...|+-+.++.+..++.... |.   ........|...+..|+|.+|+..++++.++.|++++
T Consensus        61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~---d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~  135 (257)
T COG5010          61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PK---DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE  135 (257)
T ss_pred             hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cc---cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence            346778888 889999999999999888888877777 76   6667777999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +|..+|.+|-+.|++++|...|.+++++.|+++.+..+++-.+...++.+.+        ..++..+.. ++.+..+...
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A--------~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA--------ETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH--------HHHHHHHHhCCCCchHHHHH
Confidence            9999999999999999999999999999999999999999999888888884        447777766 6678999999


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.....+|+++.|-...
T Consensus       208 LAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         208 LALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHhhcCChHHHHhhc
Confidence            999999999987665544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.57  E-value=1.5e-13  Score=109.06  Aligned_cols=148  Identities=16%  Similarity=0.087  Sum_probs=119.1

Q ss_pred             cCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039          22 QGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A  100 (206)
                      .+..+.++..+.+++... | ++...+..|+.+|.++...|++.+|+..|+++++++|+++.+|+.+|.++...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            456788999999999744 3 11225888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ...|+++++++|++..++..++.++...++...        +...|++++. .|.+.. +..........+++++|...+
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e--------A~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYEL--------AQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHH
Confidence            999999999999999999999999988888888        4447777777 555542 222222223344556666655

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.56  E-value=1.8e-13  Score=95.90  Aligned_cols=116  Identities=9%  Similarity=0.067  Sum_probs=106.2

Q ss_pred             HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      +.|++++... |+   +....+.+|.++...|++.+|+..+++++.++|.++.+++.+|.++...|++++|...+++++.
T Consensus         4 ~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552         4 ATLKDLLGLD-SE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hhHHHHHcCC-hh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999 98   7888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (206)
Q Consensus       110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      .+|+++..+..++.++...++...        +..+|++++. .|.+..
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPES--------ALKALDLAIEICGENPE  120 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhccccch
Confidence            999999999999999999988887        4458888888 555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=4e-14  Score=111.42  Aligned_cols=179  Identities=18%  Similarity=0.238  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-----------------------------HHHHHHHHHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----------------------------HERATCLKNRAAV   56 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-----------------------------~~~~~~~~~la~~   56 (206)
                      |+++..|..+|......|+++.|+..|++.+..+ +..                             ..++..+.....+
T Consensus        41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~  119 (280)
T PF13429_consen   41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQL  119 (280)
T ss_dssp             ------------------------------------------------------------------------------H-
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            5566666666666666666666666666666655 320                             1135556677778


Q ss_pred             HHHccCHHHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039          57 YLKQNQNDKVIEDCSKSLEIV--PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        57 ~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  134 (206)
                      +...++++++...++++....  |.++..|+.+|.++...|++++|...|++++.++|+++.+...+..+....++..+.
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~  199 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA  199 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence            889999999999999977665  678899999999999999999999999999999999999999998888777766652


Q ss_pred             HHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhh
Q psy1039         135 NEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIY  201 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (206)
                              ...++.... .|.+...+...+.++..+|++++|+..+      .+..+...  +||.+.
T Consensus       200 --------~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~------~~~~~~~p--~d~~~~  251 (280)
T PF13429_consen  200 --------REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL------EKALKLNP--DDPLWL  251 (280)
T ss_dssp             --------HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH------HHHHHHST--T-HHHH
T ss_pred             --------HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc------cccccccc--cccccc
Confidence                    224433333 3777788999999999999999999998      55554443  444443

>KOG1173|consensus

Probab=99.55  E-value=3.8e-13  Score=110.49  Aligned_cols=168  Identities=10%  Similarity=0.092  Sum_probs=133.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +...|+.+..|+..|..|+..|++++|.++|.++..++ |.   .+.+|...|..+...|..++|+..|.+|-++-|...
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h  380 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH  380 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-cc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence            35678999999999999999999999999999999999 88   788888888888888888888888888888887777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH--------------------------------------
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR--------------------------------------  123 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--------------------------------------  123 (206)
                      .+.+.+|.-|..++++.-|.+.|..++.+.|.+|-+...++-                                      
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence            777777777777777777777777777777777655444443                                      


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         124 ---LFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                         ++++++....        +..+|++++. .|.+..+.-..|-++..+|.++.|+..+=|
T Consensus       461 LGH~~Rkl~~~~e--------AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  461 LGHAYRKLNKYEE--------AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             HHHHHHHHhhHHH--------HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence               3333333333        4567888888 789999999999999999999999887743

>KOG0550|consensus

Probab=99.55  E-value=2.1e-13  Score=108.49  Aligned_cols=129  Identities=30%  Similarity=0.424  Sum_probs=116.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .|...+.+...|+..++.|+|.+|.++|..+|.++ |+ ...++.+|.++|.+..++|+..+|+..|+.++.++|...++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            45667889999999999999999999999999999 85 34578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  135 (206)
                      +...|.|+..+++|++|+++|++++++..+ ......+.++...+++.+++.
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD  374 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999877 777788887777777655544

>KOG2002|consensus

Probab=99.53  E-value=1.3e-13  Score=119.00  Aligned_cols=171  Identities=20%  Similarity=0.251  Sum_probs=118.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------------------------------
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------------------------------------   43 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--------------------------------------   43 (206)
                      ++.+|++.-++...|.+.|..|+|-.|+.+|..++.++ |..                                      
T Consensus       157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a  235 (1018)
T KOG2002|consen  157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA  235 (1018)
T ss_pred             HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence            56789999999999999999999999999999999998 752                                      


Q ss_pred             --------------------------------------------------------------------HHHHHHHHHHHH
Q psy1039          44 --------------------------------------------------------------------HERATCLKNRAA   55 (206)
Q Consensus        44 --------------------------------------------------------------------~~~~~~~~~la~   55 (206)
                                                                                          ...+..++.+|.
T Consensus       236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                                                                                223444666777


Q ss_pred             HHHHccCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHH
Q psy1039          56 VYLKQNQNDKVIEDCSKSLEIVPDD-PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-KRMQ  133 (206)
Q Consensus        56 ~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~  133 (206)
                      +|..+|+|++|..+|.++++.+|++ .-+++.+|..++..|+++.|+.+|++++...|++.+....+|.++...+ ....
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~  395 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK  395 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence            7777777777777777777666666 6666677777777777777777777777777777777777777666553 2222


Q ss_pred             HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         134 ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..     .+..+..++.. .|.+.+.+..++..+.+..-+.. +..|
T Consensus       396 ~d-----~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~  436 (1018)
T KOG2002|consen  396 RD-----KASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAY  436 (1018)
T ss_pred             HH-----HHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHH
Confidence            22     35566666666 56667777776666655444333 4444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.53  E-value=5e-13  Score=102.45  Aligned_cols=133  Identities=11%  Similarity=0.125  Sum_probs=113.7

Q ss_pred             ccchhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc--------cCHHHHHHHHH
Q psy1039           3 DNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ--------NQNDKVIEDCS   71 (206)
Q Consensus         3 ~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~   71 (206)
                      ..+|++   ..+++.+|..++..|++++|+..|+++++.. |+.+.....++.+|.+++..        |++++|+..|+
T Consensus        61 ~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~  139 (235)
T TIGR03302        61 SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ  139 (235)
T ss_pred             HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            344544   4688999999999999999999999999999 97444445799999999887        89999999999


Q ss_pred             HHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHH
Q psy1039          72 KSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        72 ~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~  131 (206)
                      +++..+|++..++                 +.+|..+...|++.+|+..+++++...|++   +.++..++.++..+++.
T Consensus       140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            9999999986542                 467889999999999999999999998775   47889999999999988


Q ss_pred             HHHHH
Q psy1039         132 MQENE  136 (206)
Q Consensus       132 ~~~~~  136 (206)
                      .++..
T Consensus       220 ~~A~~  224 (235)
T TIGR03302       220 DLAQD  224 (235)
T ss_pred             HHHHH
Confidence            87444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2002|consensus

Probab=99.53  E-value=6.8e-13  Score=114.71  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=145.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      +--++.+|.+|..|...|+|++|-.+|.+++..+ |+.  ..-.++++|..|...|++..|+.+|+++++..|++.+...
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~  380 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK  380 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence            3456789999999999999999999999999999 871  2667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHH
Q psy1039          86 RRCQAYEAIG----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT  161 (206)
Q Consensus        86 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (206)
                      -+|.+|...+    ..+.|.....+++...|.+..++..++.++.. ++.+... .....+...+..... +...+....
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL-~~~~~A~d~L~~~~~-~ip~E~LNN  457 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASL-DAYGNALDILESKGK-QIPPEVLNN  457 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHH-HHHHHHHHHHHHcCC-CCCHHHHHh
Confidence            9999999987    67889999999999999999999999998754 3333322 222233333333333 578888999


Q ss_pred             HHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         162 AVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .|-.++..|.++.|...+      ++....+.
T Consensus       458 vaslhf~~g~~~~A~~~f------~~A~~~~~  483 (1018)
T KOG2002|consen  458 VASLHFRLGNIEKALEHF------KSALGKLL  483 (1018)
T ss_pred             HHHHHHHhcChHHHHHHH------HHHhhhhh
Confidence            999999999999999888      66655533

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.52  E-value=1e-12  Score=116.53  Aligned_cols=119  Identities=10%  Similarity=0.131  Sum_probs=112.4

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|..+.++..+|..+...|++++|+..|++++.+. |.   +..++..+|.++...|++++|+..++++++.+|+++. 
T Consensus        44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-  118 (765)
T PRK10049         44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-  118 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence            467778889999999999999999999999999999 98   8889999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ++.+|.++...|++++|+..++++++.+|+++.+...++.++..
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888877654

>KOG4648|consensus

Probab=99.52  E-value=6e-14  Score=109.54  Aligned_cols=114  Identities=36%  Similarity=0.505  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ...+.+.|+.||++|.|++||.||.+++.++ |.   ++..+.++|.+|++..+|..|..+|+.|+.++....++|.++|
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVY-PH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccC-CC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            3456889999999999999999999999999 98   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      .+-..+|...+|.+.++.+++++|++.+....++.+..
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999888888777754

>KOG2003|consensus

Probab=99.52  E-value=2e-13  Score=110.07  Aligned_cols=175  Identities=18%  Similarity=0.205  Sum_probs=153.3

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      |+..+.-++.++.+.|++.+..|++++|.+.|..++..+ ..   -..+++++|.++..+|+.++|+.+|-+.-.+--.+
T Consensus       482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-as---c~ealfniglt~e~~~~ldeald~f~klh~il~nn  557 (840)
T KOG2003|consen  482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-AS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN  557 (840)
T ss_pred             HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence            355667788899999999999999999999999999988 77   78899999999999999999999999887777789


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE------------------------  136 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~------------------------  136 (206)
                      ..+++.++.+|..+.+..+|++.+-++..+-|++|.++..++.++.+.++..++-.                        
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi  637 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI  637 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988777665432                        


Q ss_pred             --HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         137 --QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       137 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                        +.-++..++|.++.- .|....+..+.+.|+-..|.+..|+.-|
T Consensus       638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence              122456778888777 7888999999999999999998888766

>PRK15331 chaperone protein SicA; Provisional

Probab=99.52  E-value=5.7e-13  Score=94.60  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=106.1

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...++.-+..|..|..++..|++++|...|+-.+..+ |.   +...|..+|.|+..+++|++|+..|..+..++++++.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            4567888999999999999999999999999999999 98   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +.|..|.|+..+|+...|..+|+.++. .|.+..+...-....
T Consensus       107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L  148 (165)
T PRK15331        107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL  148 (165)
T ss_pred             ccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence            999999999999999999999999998 466555444433333

>KOG1125|consensus

Probab=99.51  E-value=5.1e-14  Score=115.79  Aligned_cols=103  Identities=16%  Similarity=0.228  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .+++....+|..|+..|+|++|++||+.|+... |+   +..+|..+|.++....+.++|+..|++|+++.|.++.++|+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            678899999999999999999999999999999 99   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      +|.+++.+|.|++|.++|-.+|.+.+.
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999998775

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=7.9e-13  Score=101.89  Aligned_cols=121  Identities=20%  Similarity=0.204  Sum_probs=110.9

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p   78 (206)
                      |..||++++.|..+|.+|+..|++..|..-|.+|+++. |+   ++..+..+|.+++.+.   .-.++...+++++.++|
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GD---NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            56799999999999999999999999999999999999 99   8999999999887775   37799999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      .++.+.+.+|..++..|+|.+|...++..+...|.+.+....+.....
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia  272 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA  272 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999999988777666655443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=1.4e-13  Score=85.36  Aligned_cols=67  Identities=30%  Similarity=0.549  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCC
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p   78 (206)
                      ++..|+.+|..++..|+|++|+.+|.++++++ |+   ++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555666666666666666666666666666 65   5556666666666665 46666666666666555

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.50  E-value=9.1e-13  Score=85.02  Aligned_cols=99  Identities=36%  Similarity=0.605  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      .++.+|..++..|++++|+..+.++++.. |.   +...+..+|.++...+++++|+..|++++.+.|.+..+++.+|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            57889999999999999999999999999 88   678899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          91 YEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        91 ~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      +...|++++|...+.+++..+|+
T Consensus        78 ~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          78 YYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999988874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.49  E-value=2.9e-12  Score=113.66  Aligned_cols=163  Identities=12%  Similarity=0.091  Sum_probs=144.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|.++.-..-.-.++...|++++|+..|.++.... |.   .+..+..+|.++...|++.+|+..|++++.++|.++.++
T Consensus        11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~   86 (765)
T PRK10049         11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ   86 (765)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34555566666778889999999999999999877 77   788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +.+|.++...|++++|+..+++++..+|+++. +..++.++...++...        +...+++++. .|.+......++
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~--------Al~~l~~al~~~P~~~~~~~~la  157 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWD--------ELRAMTQALPRAPQTQQYPTEYV  157 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999 9999999988888877        5558888888 788888888899


Q ss_pred             hhhhHhcccchhhHHHH
Q psy1039         164 NNLVVLAREMSGAEMLL  180 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~~  180 (206)
                      .++...+..+.|+..+-
T Consensus       158 ~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049        158 QALRNNRLSAPALGAID  174 (765)
T ss_pred             HHHHHCCChHHHHHHHH
Confidence            98887777777765554

>PLN02789 farnesyltranstransferase

Probab=99.49  E-value=4.9e-12  Score=100.92  Aligned_cols=155  Identities=8%  Similarity=-0.018  Sum_probs=137.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~   81 (206)
                      .-.|+..+++...-.++...+.+++|+..+.++++++ |+   +..+|..+|.++..+| .+++++..++++++.+|.+.
T Consensus        31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny  106 (320)
T PLN02789         31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLN-PG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY  106 (320)
T ss_pred             eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-ch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch
Confidence            3456677777677777888999999999999999999 99   8999999999999999 68999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          82 KALFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      .+|+.++.++..+|..  +++...+.++++.+|+|..++...+.+...++...+        ...++.+++. ++.+...
T Consensus       107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e--------eL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789        107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED--------ELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHCCCchhH
Confidence            9999999999999974  778999999999999999999999999999887766        4458888888 7888888


Q ss_pred             hHHHHhhhhHh
Q psy1039         159 RVTAVNNLVVL  169 (206)
Q Consensus       159 ~~~~~~~~~~~  169 (206)
                      +...+.++...
T Consensus       179 W~~R~~vl~~~  189 (320)
T PLN02789        179 WNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHhc
Confidence            88888777665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.48  E-value=2.2e-12  Score=97.32  Aligned_cols=128  Identities=14%  Similarity=0.164  Sum_probs=120.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|.+...+...|...+..|+|..|+..+.++.++. |+   +...|..+|.+|.+.|++++|...|.+++++.|..+.+
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~---d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~  170 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT---DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI  170 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC---ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence            467788888889999999999999999999999999 98   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  135 (206)
                      ..++|..+.-.|+++.|...+.++....+.+..+..++..+....++...+.
T Consensus       171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            9999999999999999999999999999999999999999988888776643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.47  E-value=1.9e-13  Score=84.75  Aligned_cols=67  Identities=27%  Similarity=0.505  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEP  112 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  112 (206)
                      ++..|..+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47789999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0550|consensus

Probab=99.47  E-value=9.1e-13  Score=104.89  Aligned_cols=159  Identities=14%  Similarity=0.204  Sum_probs=136.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---------HHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      +++++.+.++++..|.+++-.++.+.|+.+|+++++++ |++         +.....+...|.-.++.|.+.+|.+.|..
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte  274 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE  274 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence            67899999999999999999999999999999999999 973         22344578889999999999999999999


Q ss_pred             HhhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          73 SLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (206)
Q Consensus        73 al~l~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (206)
                      +|.++|++    ...|.++|.+...+|+..+|+..+..++.++|....+...-+.++..+++++.+.        +.|++
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV--------~d~~~  346 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV--------EDYEK  346 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence            99999986    5679999999999999999999999999999999999999999999999998844        47777


Q ss_pred             hcCCCCChhhhHHHHhhhhHh
Q psy1039         149 VFDTSAPMDKRVTAVNNLVVL  169 (206)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~  169 (206)
                      +.....+..++..+.++-..+
T Consensus       347 a~q~~~s~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  347 AMQLEKDCEIRRTLREAQLAL  367 (486)
T ss_pred             HHhhccccchHHHHHHHHHHH
Confidence            777554455555554444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.46  E-value=4.5e-12  Score=92.37  Aligned_cols=108  Identities=24%  Similarity=0.257  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..+..++..|..+...|++++|+..|.+++.+. |++...+.++.++|.++...|++++|+..|++++.++|.+..++..
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            457888999999999999999999999999987 7633356689999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCh
Q psy1039          87 RCQAYE-------AIGKFE-------EAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        87 la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  115 (206)
                      +|.++.       .+|+++       +|...+++++..+|++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999988       777766       56666667777887653

>KOG0624|consensus

Probab=99.46  E-value=2.1e-11  Score=95.49  Aligned_cols=178  Identities=15%  Similarity=0.183  Sum_probs=137.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------------------------------
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------------------------------------   43 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--------------------------------------   43 (206)
                      |.+.|+...+..++|.++++.|.+++|..-|..++..+ |+.                                      
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~  177 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM  177 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence            56778888888888888888888888888888888887 741                                      


Q ss_pred             --------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          44 --------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        44 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                              +-.++++..++.||...|+...|+.+++.+-++..++++.+|..+.+++..|+.+.+....+.++.++|++.
T Consensus       178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence                    335677888999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hHHHHHHHHHH---HHHHHHHHHHHHH---------------------------------------HHHHHHHHHhcC-C
Q psy1039         116 AIQPVLSRLFA---IVTKRMQENEQLQ---------------------------------------NKVHNMFKYVFD-T  152 (206)
Q Consensus       116 ~~~~~l~~~~~---~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~-~  152 (206)
                      .-......+..   .+...++...+..                                       ..+.+..+.+++ +
T Consensus       258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d  337 (504)
T KOG0624|consen  258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID  337 (504)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence            44333333322   2222222111000                                       123445566667 6


Q ss_pred             CCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         153 SAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      |++.+.....+.+|+--..++.|+..|-
T Consensus       338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye  365 (504)
T KOG0624|consen  338 PDDVQVLCDRAEAYLGDEMYDDAIHDYE  365 (504)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            7788888889999998888898888883

>KOG2076|consensus

Probab=99.45  E-value=1.3e-11  Score=106.23  Aligned_cols=107  Identities=17%  Similarity=0.255  Sum_probs=65.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      |+++|.++.+|+.+|.+|-.+|+.++++..+-.|-.++ |.   +...|..++.....+|.+.+|+-+|.+|++.+|.++
T Consensus       166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~  241 (895)
T KOG2076|consen  166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW  241 (895)
T ss_pred             HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch
Confidence            44556666666666666666666666666666666666 55   455666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  112 (206)
                      +..+.++.++.++|+...|...|.+++.+.|
T Consensus       242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            6666666666666666666666666666665

>KOG2076|consensus

Probab=99.44  E-value=1.5e-11  Score=105.85  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ....+...|+.++..|++++|...+..+|+++ |.   +..+|+.+|.+|..+|+..+|....--|-.++|.+++-|..+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            46778889999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCh----hhhHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-APM----DKRVT  161 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----~~~~~  161 (206)
                      +....++|++.+|.-+|.+|+..+|.+-........++..+|+...+..        -|.+++. .| .+.    .....
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~--------~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME--------TFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH--------HHHHHHhhCCchhHHHHHHHHHH
Confidence            9999999999999999999999999999998999999999898887443        6666666 33 332    22233


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      .+..+...+..+.|++.+
T Consensus       286 ~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            344455555545554444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.44  E-value=6.6e-13  Score=85.58  Aligned_cols=84  Identities=29%  Similarity=0.512  Sum_probs=74.4

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A  100 (206)
                      ..|+|+.|+.+|++++... |..+ +...++.+|.|++..|+|++|+..+++ ...+|.+....+.+|.|+..+|+|++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~-~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD-PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH-CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHC-CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3689999999999999999 8422 566788899999999999999999999 889999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1039         101 YTDAKHI  107 (206)
Q Consensus       101 ~~~~~~a  107 (206)
                      ++.++++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.43  E-value=4.4e-12  Score=89.69  Aligned_cols=98  Identities=9%  Similarity=-0.056  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .....+.+|..++..|++++|...|+.++.++|.+...|+++|.++..+|+|.+|+..|.+++.++|+++.....++.++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+++...        +...|+.++.
T Consensus       114 L~lG~~~~--------A~~aF~~Ai~  131 (157)
T PRK15363        114 LACDNVCY--------AIKALKAVVR  131 (157)
T ss_pred             HHcCCHHH--------HHHHHHHHHH
Confidence            99999888        4447777777

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.43  E-value=2e-11  Score=107.93  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=121.9

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...|+.+...+..+...++.|+++.|+..|+++++.+ |+   ++.....+..++...|++++|+.++++++.-.|....
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~  103 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSR  103 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHH
Confidence            3578889999999999999999999999999999999 98   5433337778888889999999999999933333444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      ....+|.++...|+|++|++.|+++++.+|+++.+...+..++...++..+        +...++++.. .|. ......
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e--------Al~~l~~l~~~dp~-~~~~l~  174 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV--------VLKQATELAERDPT-VQNYMT  174 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH--------HHHHHHHhcccCcc-hHHHHH
Confidence            444447899999999999999999999999999988877676666655555        4556777666 344 222244


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      .+..+...++..+|+..+
T Consensus       175 layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        175 LSYLNRATDRNYDALQAS  192 (822)
T ss_pred             HHHHHHhcchHHHHHHHH
Confidence            444443344444455555

>KOG1173|consensus

Probab=99.43  E-value=1.5e-12  Score=107.09  Aligned_cols=126  Identities=24%  Similarity=0.314  Sum_probs=112.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      |+...|+++-.+.++|.+.+..+.|.+|+.+|+.++...+   ++...-...+.++|.++.+++++.+|+..|++++.+.
T Consensus       406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            4677899999999999999999999999999999995431   2222245679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      |.++.++-.+|.+|..+|+++.|+..|.+++.+.|++..+...|+.+..
T Consensus       486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888875543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.42  E-value=1.1e-11  Score=96.25  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHH
Q psy1039           8 DYNKLKESGNSA-FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA   83 (206)
Q Consensus         8 ~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~   83 (206)
                      +....|..|..+ +..|+|++|+..|+..+... |+....+.+++.+|.+|+..|++++|+..|.+++...|++   +++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            357788888876 66899999999999999999 9866667899999999999999999999999999998874   789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      ++.+|.++..+|++++|...|+++++..|++..+.....+
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r  259 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR  259 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            9999999999999999999999999999998876555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.42  E-value=1.5e-10  Score=89.20  Aligned_cols=170  Identities=14%  Similarity=0.090  Sum_probs=125.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA   83 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~   83 (206)
                      .++..++..|..++..|+|++|+..|+..+... |.++....+.+.+|.++++.+++.+|+..|++.++.+|++   +.+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            467889999999999999999999999999999 9876677778999999999999999999999999999977   567


Q ss_pred             HHHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHHH---
Q psy1039          84 LFRRCQAYEAIGK------------------FEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQLQ---  139 (206)
Q Consensus        84 ~~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~---  139 (206)
                      ++.+|.++..++.                  ..+|+..|++.+...|+++   ++...+..+...+.+.+-......   
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~  188 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR  188 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999998766541                  2568899999999999985   444445555554444433222111   


Q ss_pred             ---HHHHHHHHHhcC----CCCChhhhHHHHhhhhHhcccchhhH
Q psy1039         140 ---NKVHNMFKYVFD----TSAPMDKRVTAVNNLVVLAREMSGAE  177 (206)
Q Consensus       140 ---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~  177 (206)
                         ..+..-|+.+++    .+...+....+...+..+|..+.|-.
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~  233 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK  233 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence               112333333343    34445666677777777777765544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.42  E-value=1.2e-11  Score=107.50  Aligned_cols=130  Identities=8%  Similarity=0.002  Sum_probs=123.5

Q ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        41 p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      |+   .+..++++|.+....|.+++|...+++++++.|++..++..+|.++.+.+++++|...+++++..+|++..++..
T Consensus        83 ~~---~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         83 PH---TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cc---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            66   799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      ++.+...+++.++        +..+|++++. .|++...+...+.++...|+.++|...+.+
T Consensus       160 ~a~~l~~~g~~~~--------A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~  213 (694)
T PRK15179        160 EAKSWDEIGQSEQ--------ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA  213 (694)
T ss_pred             HHHHHHHhcchHH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999        5559999997 688899999999999999999988888875

>KOG0553|consensus

Probab=99.42  E-value=2.9e-12  Score=98.41  Aligned_cols=120  Identities=16%  Similarity=0.254  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+.-+-.-|.-+++.++|.+|+..|.+||+++|.|+-.|.++|.+|.++|.|+.|++.+++++.+||....++..|+.++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            35557778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (206)
                      ..+++...        +...|+++++ +|.+..++..+-.+-..++..+
T Consensus       160 ~~~gk~~~--------A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  160 LALGKYEE--------AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HccCcHHH--------HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999888        4458999999 7888777766655555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.39  E-value=1.9e-12  Score=79.23  Aligned_cols=62  Identities=23%  Similarity=0.375  Sum_probs=33.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      +|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|...|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555555555555555555555555555555555555555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.39  E-value=1e-10  Score=87.90  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA   83 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~   83 (206)
                      .++..++..|..++..|+|.+|+..|+..+... |.++....+.+.+|.+++..|++.+|+..|++.++..|.++   .+
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            457899999999999999999999999999999 98888899999999999999999999999999999999874   68


Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHHHHHHHHHH------HHHH
Q psy1039          84 LFRRCQAYEAIG-----------KFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRMQENEQLQ------NKVH  143 (206)
Q Consensus        84 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~~~~~~~~------~~~~  143 (206)
                      ++.+|.+++.+.           ...+|...|+..+...|+++-+...   +..+...+.+.+-......      ..+.
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            999999977654           3458999999999999999755444   4444444443333222111      1233


Q ss_pred             HHHHHhcC-CCCC---hhhhHHHHhhhhHhcccc
Q psy1039         144 NMFKYVFD-TSAP---MDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       144 ~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~  173 (206)
                      ..++.++. -|+.   ......++..+..+|...
T Consensus       162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            44444544 3433   344455666666666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=6.9e-11  Score=96.08  Aligned_cols=126  Identities=18%  Similarity=0.227  Sum_probs=119.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |.-..++|..+..++..|+++.|+..++..+... |+   ++..+...+.++...++.++|.+.+++++.++|+.+..++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~  378 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PD---NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL  378 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence            4556789999999999999999999999999999 99   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  135 (206)
                      ++|.++.+.|++.+|+..+++.+..+|+++..+..+++.+..+++..++.
T Consensus       379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            99999999999999999999999999999999999999999888766643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.37  E-value=4e-11  Score=106.11  Aligned_cols=170  Identities=12%  Similarity=0.057  Sum_probs=138.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++.+|+++-....+..++...|++++|+.++++++... |.   ....+..+|.++...|+|++|++.|+++++.+|+++
T Consensus        61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~---~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~  136 (822)
T PRK14574         61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NI---SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP  136 (822)
T ss_pred             HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            56778876455588888889999999999999999443 43   444555558899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      .+++.++.++...++.++|+..++++...+|.+... ..+..+....++..+        +...++++++ .|.+.+...
T Consensus       137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~--------AL~~~ekll~~~P~n~e~~~  207 (822)
T PRK14574        137 DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD--------ALQASSEAVRLAPTSEEVLK  207 (822)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH--------HHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999999999999999999985554 333333322232222        5568888888 799999999


Q ss_pred             HHHhhhhHhcccchhhHHHHhcch
Q psy1039         161 TAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      .....+...|-.+-|.+.+.+.|.
T Consensus       208 ~~~~~l~~~~~~~~a~~l~~~~p~  231 (822)
T PRK14574        208 NHLEILQRNRIVEPALRLAKENPN  231 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHhCcc
Confidence            999999999999888888887774

>KOG1840|consensus

Probab=99.36  E-value=6.4e-11  Score=99.03  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=132.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--------TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      ..|........+|..|...|+|+.|+..+.++++.        . |.   -......+|..|..+++|.+|+..|++|+.
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-l~---va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-LV---VASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-HH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            46777888888999999999999999999999998        3 43   555566799999999999999999999997


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1039          76 I--------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTNKAIQPVLS---RLFAIVTKRMQENEQLQ  139 (206)
Q Consensus        76 l--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~---~~~~~~~~~~~~~~~~~  139 (206)
                      +        +|....++.++|.+|...|+|++|..++++++.+-     ..++.+...+.   .++...++.+++.. +.
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~  348 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LL  348 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HH
Confidence            6        45556789999999999999999999999999863     34455544444   44445555555444 23


Q ss_pred             HHHHHHHHHhcC-C-CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         140 NKVHNMFKYVFD-T-SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       140 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +.....+..+.. . +.-..+.-.++.++..+|++.+|.+.+
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~  390 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY  390 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            334444444444 2 244667888999999999999998888

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.36  E-value=7.7e-12  Score=76.48  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +.+|..++..|+|++|+..|+++++.. |+   +..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQD-PD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            468999999999999999999999999 99   999999999999999999999999999999999875

>KOG3060|consensus

Probab=99.36  E-value=2.9e-10  Score=85.63  Aligned_cols=147  Identities=15%  Similarity=0.173  Sum_probs=129.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |.........|+.+-..|+|++|+++|+..++-+ |.   +..++-..-.+.-.+|+.-+|++-.+.-++..|.+.++|.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~  158 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH  158 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence            6777888889999999999999999999999999 98   7777777666777889999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      .++.+|...|+|.+|.-+++.++-+.|-++-....++.+....+.......     ...+|.+++. .|.+...+..
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~-----arkyy~~alkl~~~~~ral~G  230 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL-----ARKYYERALKLNPKNLRALFG  230 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHhChHhHHHHHH
Confidence            999999999999999999999999999999999999999988887665444     6779999988 5655554433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.35  E-value=5e-11  Score=82.98  Aligned_cols=113  Identities=18%  Similarity=0.258  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA   83 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~   83 (206)
                      ..+..++..|...+..|+|.+|++.|+...... |.++....+...+|.+|++.+++++|+..+++-++++|.++   .+
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            357789999999999999999999999999999 98777889999999999999999999999999999999875   57


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          84 LFRRCQAYEAIGK---------------FEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        84 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      ++.+|.+++....               ...|...|++.+...|+++.+...
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999999999887               889999999999999998766544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.35  E-value=6.9e-11  Score=95.81  Aligned_cols=161  Identities=12%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh----hhCCCCHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVPDDPK   82 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~p~~~~   82 (206)
                      +..+..+..|..++..|++++|+..++++++.. |+   +...+.. +..++..|.+..+...+.+++    ..+|....
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PR---DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY  115 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence            345556666777777777777777777777777 76   4444443 444444443333333333332    44555666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC----hh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----MD  157 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~  157 (206)
                      ++..+|.++...|++++|...++++++++|+++.+...++.++...++..+        +..++++.+. .|.+    ..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e--------A~~~l~~~l~~~~~~~~~~~~  187 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE--------GIAFMESWRDTWDCSSMLRGH  187 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHhhhhccCCCcchhHH
Confidence            677788899999999999999999999999999999999999988888877        4447777776 3322    12


Q ss_pred             hhHHHHhhhhHhcccchhhHHHH
Q psy1039         158 KRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       158 ~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      .+..++.++...|++++|...+-
T Consensus       188 ~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         188 NWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
Confidence            34578999999999999988873

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0551|consensus

Probab=99.33  E-value=1.2e-10  Score=90.57  Aligned_cols=108  Identities=27%  Similarity=0.404  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..++.+...|+.|++..+|..|+.+|.++|....+++..++.+|.|+|.|.+..|+|..|+.+|.+++.++|++.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            46788999999999999999999999999997646778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      -|.|++.+.++.+|...++..+.++.+.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999888888887776665443

>KOG1129|consensus

Probab=99.33  E-value=1.6e-12  Score=101.09  Aligned_cols=138  Identities=14%  Similarity=0.143  Sum_probs=115.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--C-
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P-   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p-   78 (206)
                      ++.+|.+.++....|..||-.++.+-|+.+|++.+++. -.   +++++.|+|.|.+..++++-++..|.+++..-  | 
T Consensus       317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~  392 (478)
T KOG1129|consen  317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG  392 (478)
T ss_pred             HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence            45666777777777777777777777777777777776 55   79999999999999999999999999998663  3 


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      .-.++||++|.+....|++..|..+|+-++..+|+|.++..+++-+..+.++-..        +..+++.+.+
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~--------Arsll~~A~s  457 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG--------ARSLLNAAKS  457 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH--------HHHHHHHhhh
Confidence            3578999999999999999999999999999999999999999999888777666        3346666655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=2.3e-10  Score=83.32  Aligned_cols=148  Identities=10%  Similarity=0.081  Sum_probs=108.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcC
Q psy1039          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIG   95 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g   95 (206)
                      ++-.++|..+...+...++.. +. ......++++|.++...|++++|+..|++++.+.|+.   +.+++++|.++...|
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~-~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTT-SG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccchhhhhHhccCC-ch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            445566777777776665554 42 2257889999999999999999999999999997763   458999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039          96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (206)
Q Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (206)
                      ++++|+..+++++.++|.+...+..++.++..++       +...+.. .......+|++++. .|.+.   .....++.
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~-~~~~a~~~~~~a~~~~p~~~---~~~~~~~~  162 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA-WFDQAAEYWKQAIALAPGNY---IEAQNWLK  162 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH-HHHHHHHHHHHHHHhCcccH---HHHHHHHH
Confidence            9999999999999999999999999999988444       3333222 22234567777776 44333   33334444


Q ss_pred             Hhccc
Q psy1039         168 VLARE  172 (206)
Q Consensus       168 ~~~~~  172 (206)
                      ..|+|
T Consensus       163 ~~~~~  167 (168)
T CHL00033        163 ITGRF  167 (168)
T ss_pred             HhcCC
Confidence            44443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.30  E-value=8.3e-11  Score=95.57  Aligned_cols=112  Identities=12%  Similarity=0.116  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      +...|...+..|+|.+|+..|+++++++|++..+++.+|.++..+|++++|+..+++++.++|+++.++..++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL  169 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (206)
                      +...        +...|++++. .|.+......+..+...+
T Consensus        85 ~~~e--------A~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQT--------AKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9888        5558888888 688877777777765554

>KOG1156|consensus

Probab=99.28  E-value=2.2e-10  Score=95.90  Aligned_cols=174  Identities=13%  Similarity=0.104  Sum_probs=114.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      |+-.|.+++.+...|..+...|+-++|..+...+++.+ +.   +..+|+-+|..+....+|++|+.+|+.|+.+.|+|.
T Consensus        34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence            34456667777777777777777777777777777766 66   666777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-----
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP-----  155 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----  155 (206)
                      ..|.-++....++++++.....-.+.+++.|.+...+..++..+..+++...+.+     ..+.|.+... .+..     
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-----il~ef~~t~~~~~s~~~~e~  184 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-----ILEEFEKTQNTSPSKEDYEH  184 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccCCCHHHHHH
Confidence            7777777777777777777777777777777777666666666666666655554     4445555553 2222     


Q ss_pred             hhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         156 MDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      .+........+.+.|.+++|.+.+.++..
T Consensus       185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  185 SELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence            22233344555666777777777765543

>KOG1840|consensus

Probab=99.27  E-value=5.3e-10  Score=93.60  Aligned_cols=174  Identities=16%  Similarity=0.156  Sum_probs=136.7

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--   77 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--   77 (206)
                      .+|.-+..+.++|..|.+.|+|++|..++++|+++..    .+++.-+..+.+++..+..++++++|..++.+++++-  
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            5788899999999999999999999999999999763    1234467789999999999999999999999998762  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-----TN---KAIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                            |.-+..+.++|.+|..+|+|++|.+.+++++....     .+   ......++..+...+...++.. ......
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~-l~~~~~  436 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ-LFEEAK  436 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH-HHHHHH
Confidence                  23467899999999999999999999999999642     22   3344555666655555554433 333455


Q ss_pred             HHHHHhcC--CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         144 NMFKYVFD--TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .+. +...  .|+.......++..|-.+|++++|.+-.
T Consensus       437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~  473 (508)
T KOG1840|consen  437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE  473 (508)
T ss_pred             HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence            666 5555  3566777788999999999999887765

>KOG4162|consensus

Probab=99.27  E-value=6e-11  Score=100.78  Aligned_cols=123  Identities=16%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..|...|..+...++.++|..+..++-.++ |.   .+..|+.+|.++...|++.+|.+.|..++.++|+++.....+|.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~  726 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKID-PL---SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE  726 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            344555555555666666666666666666 65   56666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHH--HHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          90 AYEAIGKFEEAYT--DAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        90 ~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ++...|+-.-|..  .+..+++++|.++++|..+|.+....|+..++..
T Consensus       727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence            6666666555555  6666666666666666666666666666655543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.27  E-value=2.2e-10  Score=87.46  Aligned_cols=114  Identities=17%  Similarity=0.198  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF   85 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~   85 (206)
                      ++-.|+.+..++..|+|..|...|..-++.. |++.+.+.++|-+|.+++.+|+|.+|...|..+.+-.|++   +++++
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            3458999999999999999999999999999 9988899999999999999999999999999999998875   67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      .+|.+...+|+.++|...|+++++..|+.+.+...-..
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            99999999999999999999999999999877655433

>KOG1156|consensus

Probab=99.26  E-value=1.9e-10  Score=96.19  Aligned_cols=162  Identities=14%  Similarity=0.051  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .....+|..+.-.+..++|...+...+..++-. |+   +++.+...|..+..+|+-++|....+.+++.++.+.-+|+.
T Consensus         5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv   80 (700)
T KOG1156|consen    5 PKENALFRRALKCYETKQYKKGLKLIKQILKKF-PE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV   80 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-Cc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence            355688899999999999999999999999998 99   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL  166 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (206)
                      +|.++....+|++|+++|..|+.++|+|..++..++.++..+++..-.       +..-.......|.....|...+...
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~-------~~tr~~LLql~~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY-------LETRNQLLQLRPSQRASWIGFAVAQ  153 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998886652       2223333333688888999999988


Q ss_pred             hHhcccchhhHHH
Q psy1039         167 VVLAREMSGAEML  179 (206)
Q Consensus       167 ~~~~~~~~a~~~~  179 (206)
                      ...|.+..|...+
T Consensus       154 ~L~g~y~~A~~il  166 (700)
T KOG1156|consen  154 HLLGEYKMALEIL  166 (700)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887666554

>KOG0545|consensus

Probab=99.26  E-value=3.2e-10  Score=85.07  Aligned_cols=110  Identities=28%  Similarity=0.396  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------cC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ....+...|+-+|+.|+|.+|...|..|+-.-.       |.       ......++.|.+.|++..|+|-++++.++..
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            456789999999999999999999999886431       32       1346678999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      +..+|.|.++||.+|.++...-+.++|...|.++++++|.-.++
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999999999999999999999999999976544

>TIGR00540 hemY_coli hemY protein

Probab=99.26  E-value=5.1e-10  Score=92.73  Aligned_cols=170  Identities=12%  Similarity=0.064  Sum_probs=123.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCc--------------------------------H---
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EES--------------------------------H---   44 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~--------------------------------~---   44 (206)
                      ++.+|+++.++..+|..+...|+|++|++.+.+..+...  |..                                +   
T Consensus       180 ~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~  259 (409)
T TIGR00540       180 LEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR  259 (409)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence            356788888999999999999999988888887775521  110                                0   


Q ss_pred             -HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hHHH
Q psy1039          45 -ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL--FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK--AIQP  119 (206)
Q Consensus        45 -~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~  119 (206)
                       .+..++...|..+...|++++|...++++++..|++....  ..........++.+.+.+.++++++.+|+++  .+..
T Consensus       260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence             1456677778888888888888888888888888876532  2223333445777888888888888888888  8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         120 VLSRLFAIVTKRMQENEQLQNKVHNMFK--YVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .++.++...++..+        +..+|+  .+....++......++..+.+.|+.++|.+.+
T Consensus       340 sLg~l~~~~~~~~~--------A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       340 ALGQLLMKHGEFIE--------AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             HHHHHHHHcccHHH--------HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888777777        445888  45553334444558888888888888887776

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.25  E-value=4.6e-10  Score=76.75  Aligned_cols=99  Identities=20%  Similarity=0.163  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---CHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFR   86 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~   86 (206)
                      .++|+.|..+-..|+.++|+.+|++++... .+......++..+|.++..+|++++|+..+++++.-.|+   +......
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            578999999999999999999999999987 665556789999999999999999999999999999898   7788888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ++.++...|++++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.23  E-value=5e-10  Score=90.76  Aligned_cols=166  Identities=10%  Similarity=-0.013  Sum_probs=134.7

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|+.+.++..+|..+...|+++.+...+.++.... |.........+..|.++...|++++|...++++++.+|++..+
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a   79 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA   79 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence            379999999999999999999999999999999888 6422256667789999999999999999999999999999988


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIH----RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      +.. +..+...|++..+.....+++    ..+|........++.++...++..+        +...+++++. .|.+...
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~--------A~~~~~~al~~~p~~~~~  150 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR--------AEEAARRALELNPDDAWA  150 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCCCCcHH
Confidence            775 666666665544444444444    4556666677777788888777777        5558888888 7888888


Q ss_pred             hHHHHhhhhHhcccchhhHHH
Q psy1039         159 RVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       159 ~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ...++.++.+.|++++|...+
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            899999999999999999887

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162|consensus

Probab=99.22  E-value=4.1e-10  Score=95.82  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=103.3

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHhhhCCCCH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE--DCSKSLEIVPDDP   81 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~l~p~~~   81 (206)
                      ..|..+..|+..|..+...|++.+|...|..|+.++ |+   +..+...+|.++...|+-.-|..  ....+++++|.++
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~---hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~  754 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PD---HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH  754 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CC---CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence            457778899999999999999999999999999999 99   89999999999999998777777  9999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      ++|+.+|.++..+|+.++|..+|..++++++.+|..
T Consensus       755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~  790 (799)
T KOG4162|consen  755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL  790 (799)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence            999999999999999999999999999999988753

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.22  E-value=6.4e-10  Score=71.38  Aligned_cols=95  Identities=25%  Similarity=0.395  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      .++.+|.++...|++++|+..++++++..|.+..+++.+|.++...|++++|...+++++...|.++.+...++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         129 TKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++...        +..++.++..
T Consensus        82 ~~~~~--------a~~~~~~~~~   96 (100)
T cd00189          82 GKYEE--------ALEAYEKALE   96 (100)
T ss_pred             HhHHH--------HHHHHHHHHc
Confidence            87666        3346666654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=7.5e-10  Score=80.99  Aligned_cols=108  Identities=11%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        44 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      +..+..++.+|..+...|++++|+.+|++++.+.|+.   ..+++.+|.++...|++++|...+++++...|++......
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3477889999999999999999999999999987764   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcC
Q psy1039         121 LSRLFAIVTKRMQENEQL------QNKVHNMFKYVFD  151 (206)
Q Consensus       121 l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  151 (206)
                      ++.++...++...+.+..      ...+..++++++.
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence            998887766543322222      2335566666666

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.21  E-value=6.8e-11  Score=72.86  Aligned_cols=66  Identities=32%  Similarity=0.468  Sum_probs=51.4

Q ss_pred             HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      +..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467788888888888888888888888888888888888888888888888888887766665544

...

>KOG1128|consensus

Probab=99.21  E-value=5.9e-10  Score=94.46  Aligned_cols=126  Identities=16%  Similarity=0.070  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ++.+...+|......++|+++...++..++++|-....||.+|.+..+++++..|.++|.+++.++|++..+++++...+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            34444555555667799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..+++..++-.        .++.++. .-..-.++...+-.....|.+++|++.+
T Consensus       564 i~~~~k~ra~~--------~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  564 IRLKKKKRAFR--------KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHhhhHHHHH--------HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            99998888444        7888888 4566788889999999999998888877

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.7e-09  Score=84.17  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      +..+|...+....+|+.|...|..+.||.+-+..++-  |+-  .....+...+|.-|+..|-++.|...|........-
T Consensus        62 l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef  139 (389)
T COG2956          62 LQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF  139 (389)
T ss_pred             HhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh
Confidence            4456777777777777777777777777776665553  431  112233444555555555555555555444433322


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      -..+...+-.+|....+|++|+..-++...+.|+
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q  173 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ  173 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence            3344444444444444444444444444444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.21  E-value=6.7e-10  Score=75.63  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPV  120 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  120 (206)
                      +..++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|...|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3568999999999999999999999999999887   5789999999999999999999999999999986   567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039         121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (206)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      ++.++...++...        +..++++++. .|.+..
T Consensus        82 ~~~~~~~~~~~~~--------A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LGMSLQELGDKEK--------AKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHhCChHH--------HHHHHHHHHHHCcCChh
Confidence            8888887777666        4457777777 455443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.20  E-value=2.5e-09  Score=75.99  Aligned_cols=132  Identities=18%  Similarity=0.156  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKAL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~   84 (206)
                      .+...|......+..+++..+...++..+.-. |+.+....+.+.+|.+++..|++++|...|+.++...|+.   ..+.
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            45566777777778999999999999999988 8866668888999999999999999999999999887665   4578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      +++|.++...|++++|...++. +.-.+-.+.+....|.++...++...        +...|+++
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~--------A~~~y~~A  144 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDE--------ARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHH--------HHHHHHHh
Confidence            8899999999999999999966 34455567788889999988888887        44466655

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=3.7e-09  Score=82.29  Aligned_cols=175  Identities=15%  Similarity=0.145  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..++..+-.+|....+|++||+.-++...+. |.  +..-+..|..+|..+....+++.|...+.+|++-+|....+-..
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            3455556666666666666666666666665 43  23345566677777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (206)
                      +|.+....|+|+.|++.++++++.+|+. +.+...+..++..+++...        ...+.+++.+.-.....-..++..
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~--------~~~fL~~~~~~~~g~~~~l~l~~l  291 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE--------GLNFLRRAMETNTGADAELMLADL  291 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHccCCccHHHHHHHH
Confidence            7777777777777777777777777765 5666666677776666555        334666666643444444444444


Q ss_pred             hhHhcccchhh----HHHHhcchHHHHHHHh
Q psy1039         166 LVVLAREMSGA----EMLLKSGVAKQINTLL  192 (206)
Q Consensus       166 ~~~~~~~~~a~----~~~~~~~~~~~~~~~~  192 (206)
                      .......+.|.    +.+-+.|.+..+-.++
T Consensus       292 ie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~  322 (389)
T COG2956         292 IELQEGIDAAQAYLTRQLRRKPTMRGFHRLM  322 (389)
T ss_pred             HHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence            44444333332    2333555544444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.20  E-value=1.7e-09  Score=95.65  Aligned_cols=131  Identities=11%  Similarity=0.112  Sum_probs=116.0

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-   81 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-   81 (206)
                      .-+|.+..++..+...+...|++++|+..++.+++.. |+   ....|+.+|..+++.+++.++...  +++.+.+.+. 
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~   98 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK   98 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-Cc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc
Confidence            4578999999999999999999999999999999999 99   899999999999999988877766  6666666665 


Q ss_pred             ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          82 ------------------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN  140 (206)
Q Consensus        82 ------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  140 (206)
                                        .+++.+|.||-.+|++++|...|+++++++|+|+.+.++++-.+... +..++.....+
T Consensus        99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720         99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence                              89999999999999999999999999999999999999999998877 66665554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.19  E-value=8.7e-10  Score=78.37  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ...+...+|..++..|++++|+..|+.++... |+......+...+|.+++..|++++|+..++. +.-.+-.+.++..+
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~  124 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL  124 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence            37788899999999999999999999999988 87666677899999999999999999999966 34444556778889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al  108 (206)
                      |.++...|++++|+..|++++
T Consensus       125 Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  125 GDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999999875

>KOG0376|consensus

Probab=99.19  E-value=4.7e-11  Score=97.02  Aligned_cols=118  Identities=28%  Similarity=0.429  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      +..+...+..++..+.|+.|+..|.++|+++ |+   .+.++.+++.++.+.++|..|+.++.+|++++|...++|+++|
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ld-pn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg   79 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELD-PN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG   79 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcC-Cc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence            4566788999999999999999999999999 99   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      .+...++.+.+|...|++...+.|+++.+...+.++.....+
T Consensus        80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888776555

>KOG1129|consensus

Probab=99.18  E-value=2.1e-10  Score=89.48  Aligned_cols=157  Identities=12%  Similarity=-0.004  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      +.+..++.+|.+..+...|+..|...++.. |.   +...+...+.++..++++++|.++|+.+++++|.|.++.-..|.
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~f-P~---~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~  332 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDSF-PF---DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV  332 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cc---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence            344444444444444444444444444444 44   55555556666666666666666666666666666555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCChhhhHHHHhh
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----TSAPMDKRVTAVNN  165 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  165 (206)
                      .|+.-++.+-|..+|++.+...-.+++...+++.+...-++..-        +...|.+++.    +....+.|..++.+
T Consensus       333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~--------~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL--------VLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh--------hHHHHHHHHhhccCcchhhhhhhcccee
Confidence            55555555555555555555555555555555555554444333        2234444433    22335555555555


Q ss_pred             hhHhcccchhhHH
Q psy1039         166 LVVLAREMSGAEM  178 (206)
Q Consensus       166 ~~~~~~~~~a~~~  178 (206)
                      ....|++--|..+
T Consensus       405 aV~iGD~nlA~rc  417 (478)
T KOG1129|consen  405 AVTIGDFNLAKRC  417 (478)
T ss_pred             EEeccchHHHHHH
Confidence            5555555444433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.18  E-value=9.9e-09  Score=84.81  Aligned_cols=155  Identities=15%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             HHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1039          20 FKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE   98 (206)
Q Consensus        20 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~   98 (206)
                      ...|+++.|..+|.++.+.. |+   ... .....+..+...|++++|+..+++..+.+|+++.++..++.+|...|+|+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~-~~---~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        129 QQRGDEARANQHLERAAELA-DN---DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcC-Cc---chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            44444444444444444444 43   111 11122444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA  176 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~  176 (206)
                      +|.+.+.+..+..+.++.....+. ..+..+-....... -......+.+.... .+.+.......+..+...|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            444444444444333322211111 11000000000000 00112333333333 4667888899999999999998888


Q ss_pred             HHH
Q psy1039         177 EML  179 (206)
Q Consensus       177 ~~~  179 (206)
                      +.+
T Consensus       284 ~~L  286 (398)
T PRK10747        284 QII  286 (398)
T ss_pred             HHH
Confidence            877

>TIGR00540 hemY_coli hemY protein

Probab=99.18  E-value=4.8e-09  Score=86.96  Aligned_cols=166  Identities=13%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      |+....+...|..+...|+++.|..++.++.+.. |+   .. .+....+..+...|+++.|...+++.++..|+++.++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~---~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l  190 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GN---DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVL  190 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3334444455555555555555555555555555 44   21 2233345555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CChhhh
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS----APMDKR  159 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~  159 (206)
                      ..++.++...|+|++|.+.+.+..+..+.++.....+.... ..+......  .++ ....+..+.. .|    .+....
T Consensus       191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a-~~~~l~~~~--~~~-~~~~L~~~~~~~p~~~~~~~~l~  266 (409)
T TIGR00540       191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA-EIGLLDEAM--ADE-GIDGLLNWWKNQPRHRRHNIALK  266 (409)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHHHHHHHH--Hhc-CHHHHHHHHHHCCHHHhCCHHHH
Confidence            55555555555555555555555554333322221111100 000000000  000 0012222222 23    588899


Q ss_pred             HHHHhhhhHhcccchhhHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ...+..+...|++++|.+.+
T Consensus       267 ~~~a~~l~~~g~~~~A~~~l  286 (409)
T TIGR00540       267 IALAEHLIDCDDHDSAQEII  286 (409)
T ss_pred             HHHHHHHHHCCChHHHHHHH
Confidence            99999999999998888777

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=99.18  E-value=2.9e-09  Score=87.01  Aligned_cols=162  Identities=9%  Similarity=-0.039  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHH---hccccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhh
Q psy1039          11 KLKESGNSAFKQGDY---ETALDFYTKAL---KVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLE   75 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~---~~A~~~~~~al---~~~~p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~   75 (206)
                      ..+.+|...+..+..   +.|+.+|.+++   .++ |.   .+.+|..++.|++..         ..-.+|.+..++|++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-TL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-cc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            558889888877754   46889999999   899 98   899999999999776         235688999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA  154 (206)
Q Consensus        76 l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (206)
                      ++|.++.++..+|.++...++++.|...|++++.++|+...++...+.+....++...        +..+.++++. .|.
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~--------a~~~i~~alrLsP~  404 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE--------ARICIDKSLQLEPR  404 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHhccCch
Confidence            9999999999999999999999999999999999999999999999999988888777        4458888887 665


Q ss_pred             ChhhhHHHHhh-hhHhcccchhhHHHHhcch
Q psy1039         155 PMDKRVTAVNN-LVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       155 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~  184 (206)
                      .......+... ..--...+.|++-|+|..+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            55554444443 3344556889999988655

>KOG4642|consensus

Probab=99.18  E-value=7.5e-11  Score=87.96  Aligned_cols=114  Identities=26%  Similarity=0.335  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      .+.-+..-|+.++....|..|+.+|.++|-++ |.   .+..|.+++.|++++.+|+.+..++++++++.|+..+++|.+
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl   84 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL   84 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcC-CC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence            45667788999999999999999999999999 99   889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLF  125 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~  125 (206)
                      |.+......|++|+..++++..+.-.     -.++...|..+.
T Consensus        85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            99999999999999999999665322     235555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.18  E-value=1.9e-10  Score=71.83  Aligned_cols=65  Identities=26%  Similarity=0.559  Sum_probs=37.2

Q ss_pred             HHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy1039          55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (206)
Q Consensus        55 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  119 (206)
                      ..|...++|++|+..+++++.++|+++..++.+|.++..+|++.+|...++++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555554433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.16  E-value=1.6e-09  Score=89.46  Aligned_cols=119  Identities=10%  Similarity=0.022  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      ....|..+...|+.++|...++++++ .|.++......+.+  ..++.+++.+.+++.++.+|+++.....++.+....+
T Consensus       266 ~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        266 QVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG  342 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            33344444444444455444444444 22233222222222  2244555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +..+        +..+|++++...++......++.++-..|+.++|...+
T Consensus       343 ~~~~--------A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~  384 (398)
T PRK10747        343 EWQE--------ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMR  384 (398)
T ss_pred             CHHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555        33466666664333444456666666666666666655

>KOG1174|consensus

Probab=99.15  E-value=1e-09  Score=87.90  Aligned_cols=167  Identities=10%  Similarity=0.043  Sum_probs=103.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      |..+|++..++...|..+...|+.++|+-.|+.|..+. |.   ...+|.++-.||...|++.+|.-..+.++..-|.+.
T Consensus       327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence            34455555555555555555555555555555555555 54   455555555555555555555555555555555555


Q ss_pred             HHHHHHH-HHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhh
Q psy1039          82 KALFRRC-QAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR  159 (206)
Q Consensus        82 ~~~~~la-~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (206)
                      .++-.+| .++...- --++|.+.+++++.++|....+...+++++..-+..+.        ...+.++.+..-.|....
T Consensus       403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D--------~i~LLe~~L~~~~D~~LH  474 (564)
T KOG1174|consen  403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD--------IIKLLEKHLIIFPDVNLH  474 (564)
T ss_pred             hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch--------HHHHHHHHHhhccccHHH
Confidence            5544443 2222222 22557777778888888888888888887777776666        334666666655666677


Q ss_pred             HHHHhhhhHhcccchhhHHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ..++..+.-.+.+.+|++.|.
T Consensus       475 ~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  475 NHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH
Confidence            778888888888888877765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.14  E-value=1.4e-09  Score=88.57  Aligned_cols=122  Identities=20%  Similarity=0.153  Sum_probs=110.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++..|+|+..+-..|.+++..|+..+|++.+++++.++ |+   ...++.++|.++++.|++.+|+..+++.+.-+|+++
T Consensus       333 ~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         333 IAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            45689999999999999999999999999999999999 99   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ..|..+|.+|..+|+-.+|...+-....+..+-..+...+......
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988888888777766666655555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.14  E-value=4.2e-10  Score=70.25  Aligned_cols=70  Identities=29%  Similarity=0.466  Sum_probs=65.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..+++..++|++|+.++++++.++ |+   ++..+..+|.+++.+|++.+|+..|+++++..|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD-PD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC-cc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            568899999999999999999999 99   99999999999999999999999999999999999887765553

>KOG3060|consensus

Probab=99.13  E-value=3.3e-08  Score=74.68  Aligned_cols=156  Identities=12%  Similarity=-0.019  Sum_probs=139.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .++--..+-....+.+..|+...|..++++.-... |.   +...-...|..+...|++.+|+++|+..++-+|.|.-.+
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~---S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~  123 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG---SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR  123 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC---ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH
Confidence            34455566677788889999999999999999999 98   788888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      -++-.+...+|+--+|++.+...++..|.+++++..++.++...++..+        +.-++..++- .|-+.....+++
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k--------A~fClEE~ll~~P~n~l~f~rla  195 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK--------AAFCLEELLLIQPFNPLYFQRLA  195 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH--------HHHHHHHHHHcCCCcHHHHHHHH
Confidence            9998899999999999999999999999999999999999999999988        4446766666 799999999999


Q ss_pred             hhhhHhccc
Q psy1039         164 NNLVVLARE  172 (206)
Q Consensus       164 ~~~~~~~~~  172 (206)
                      ..+..+|.-
T Consensus       196 e~~Yt~gg~  204 (289)
T KOG3060|consen  196 EVLYTQGGA  204 (289)
T ss_pred             HHHHHHhhH
Confidence            999988863

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.10  E-value=3e-10  Score=69.94  Aligned_cols=67  Identities=33%  Similarity=0.406  Sum_probs=61.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ++..|+|++|+..|++++..+ |+   +..+++.+|.|++..|++++|...+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN-PD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT-TT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467899999999999999999 99   89999999999999999999999999999999999887776664

...

>KOG0495|consensus

Probab=99.10  E-value=4.7e-09  Score=88.40  Aligned_cols=159  Identities=13%  Similarity=0.070  Sum_probs=134.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +.-+|++.+.|...-...+...+++.|..+|.++-... |+    ...|..-+.....++..++|+..++++++..|++.
T Consensus       611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~  685 (913)
T KOG0495|consen  611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GT----ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH  685 (913)
T ss_pred             HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence            34577788888888888888888888888888888877 74    78888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      +.|..+|.++.++++.+.|...|...+...|.++..+..++.+....++..+        +...+.++.- .|.+...+.
T Consensus       686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r--------AR~ildrarlkNPk~~~lwl  757 (913)
T KOG0495|consen  686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR--------ARSILDRARLKNPKNALLWL  757 (913)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh--------HHHHHHHHHhcCCCcchhHH
Confidence            9999999999999999999999999999999999999999988877766555        4457777766 688888887


Q ss_pred             HHHhhhhHhcccc
Q psy1039         161 TAVNNLVVLAREM  173 (206)
Q Consensus       161 ~~~~~~~~~~~~~  173 (206)
                      ...+.-+..|..+
T Consensus       758 e~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  758 ESIRMELRAGNKE  770 (913)
T ss_pred             HHHHHHHHcCCHH
Confidence            7777766666554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.10  E-value=3.8e-09  Score=75.21  Aligned_cols=109  Identities=11%  Similarity=-0.007  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .....+..|.-++..|++++|...|+-....+|.+++.++.+|.|+..+++|++|+..|..+..+++++|......+.++
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHH
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTA  162 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (206)
                      ..+++...        +...|..+++.|.+...+.+.
T Consensus       116 l~l~~~~~--------A~~~f~~a~~~~~~~~l~~~A  144 (165)
T PRK15331        116 LLMRKAAK--------ARQCFELVNERTEDESLRAKA  144 (165)
T ss_pred             HHhCCHHH--------HHHHHHHHHhCcchHHHHHHH
Confidence            99999888        555888888866655544443

>KOG1128|consensus

Probab=99.09  E-value=6.2e-10  Score=94.34  Aligned_cols=125  Identities=11%  Similarity=0.098  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ++.+.+..|...+++++|+++..+++..++++ |-   ....|+++|.|..+++++..|..+|.+++.++|++..+|.++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl---q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl  559 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEIN-PL---QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL  559 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcC-cc---chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence            34455666777788899999999999999999 97   889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      +.+|...|+-.+|...++.+++-+-++..++.+...+....+..+++..
T Consensus       560 s~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  560 STAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            9999999999999999999999999999999999888888888887554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.09  E-value=3.1e-09  Score=94.00  Aligned_cols=174  Identities=15%  Similarity=0.123  Sum_probs=125.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------HHHHHHHHHHHHHHHHccCHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------HERATCLKNRAAVYLKQNQNDK   65 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------~~~~~~~~~la~~~~~~~~~~~   65 (206)
                      +..+|+....++..|..+++.+++.++...  .++... +..                ..+..+++.+|.||-++|++++
T Consensus        58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k  134 (906)
T PRK14720         58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK  134 (906)
T ss_pred             HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence            567899999999999999999999888777  666665 441                1133789999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------CCChhHHHH-HHHH
Q psy1039          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--------------------PTNKAIQPV-LSRL  124 (206)
Q Consensus        66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~-l~~~  124 (206)
                      |...++++++++|+|+.++.++|..|... +.++|..++.+++...                    |++.+.... +..+
T Consensus       135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki  213 (906)
T PRK14720        135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV  213 (906)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence            99999999999999999999999999999 9999999988877753                    332222111 1111


Q ss_pred             HHHHH------------HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         125 FAIVT------------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       125 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ....+            +.-...... .....+++.+++ +|.+.-.+..++.||...-....-++.++
T Consensus       214 ~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l  281 (906)
T PRK14720        214 LGHREFTRLVGLLEDLYEPYKALEDW-DEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYL  281 (906)
T ss_pred             HhhhccchhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence            11111            000000000 125678899999 78999999999999985544444444443

>KOG1174|consensus

Probab=99.08  E-value=3.8e-09  Score=84.72  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=83.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      -|++...+-.+|.+++..|++.+|+..|+++..++ |.   +....-..|..+-..|+++.-...-...+.........|
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py---~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w  303 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PD---NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW  303 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hh---hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence            46778888899999999999999999999999988 86   333333334444344444433333333333333333334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +--|..++..++|..|...-++++..+|.+.++....|.+...+++-.++..        .|+.+.. .|.+.+...-+.
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I--------aFR~Aq~Lap~rL~~Y~GL~  375 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI--------AFRTAQMLAPYRLEIYRGLF  375 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH--------HHHHHHhcchhhHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444433222        4444444 344444444444


Q ss_pred             hhhhHhcccc
Q psy1039         164 NNLVVLAREM  173 (206)
Q Consensus       164 ~~~~~~~~~~  173 (206)
                      .+|+-.+++.
T Consensus       376 hsYLA~~~~k  385 (564)
T KOG1174|consen  376 HSYLAQKRFK  385 (564)
T ss_pred             HHHHhhchHH
Confidence            4444444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.08  E-value=1.9e-08  Score=84.96  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      ++.+|..|-..|++++|+++.++||...|..++.|+.+|.++...|++.+|.+.++.+-.+|+.+..+.........+.+
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555444444444444


Q ss_pred             HHHH
Q psy1039         130 KRMQ  133 (206)
Q Consensus       130 ~~~~  133 (206)
                      +.+.
T Consensus       277 ~~e~  280 (517)
T PF12569_consen  277 RIEE  280 (517)
T ss_pred             CHHH
Confidence            4444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.08  E-value=8.8e-10  Score=69.78  Aligned_cols=72  Identities=25%  Similarity=0.432  Sum_probs=54.4

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--c-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--E-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      +|+.+..+.++|.++...|+|++|+.+|++++++..  + +.+..+.++.++|.++..+|++++|++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            477788888888888888888888888888887631  2 22335777888888888888888888888888765

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.07  E-value=3.4e-08  Score=83.54  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ  139 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  139 (206)
                      +++.+|..|-..|++++|..+++++|...|..++.....++++...|+...+...++
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~  252 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMD  252 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            367778888888888888888888888888888888888888888777766665444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.4e-08  Score=78.53  Aligned_cols=120  Identities=13%  Similarity=0.116  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC---HHHHH
Q psy1039          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK---FEEAY  101 (206)
Q Consensus        25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~---~~~A~  101 (206)
                      .+..+.-.+.-+..+ |+   ++.-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.++....+   -.++.
T Consensus       138 ~~~l~a~Le~~L~~n-P~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         138 MEALIARLETHLQQN-PG---DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHHHhC-CC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            556666778888888 88   899999999999999999999999999999999999999999988777653   46788


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (206)
Q Consensus       102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                      ..+++++.+||.|..+...++......+++.+        +...++.+++ .|.+.
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~--------A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAE--------AAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhcCCCCC
Confidence            99999999999999999999999888888888        4447777777 34443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.05  E-value=1.6e-08  Score=85.77  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHhhh
Q psy1039           8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEI   76 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~l   76 (206)
                      .+..++..|..++..++   +..|+.+|+++++++ |+   .+.++..++.++....        +...+.....+++.+
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            56678889999987766   789999999999999 99   8888888888886653        345666666776664


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          77 --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        77 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                        +|.++.++..+|..+...|++++|...+++++.++| +..++..++.++...|+..+        +...|++++. .|
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~e--------A~~~~~~A~~L~P  484 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRL--------AADAYSTAFNLRP  484 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCC
Confidence              777888899999999999999999999999999999 47889999999999998888        4558888887 55


Q ss_pred             CCh
Q psy1039         154 APM  156 (206)
Q Consensus       154 ~~~  156 (206)
                      ...
T Consensus       485 ~~p  487 (517)
T PRK10153        485 GEN  487 (517)
T ss_pred             CCc
Confidence            544

>KOG1127|consensus

Probab=99.03  E-value=1e-08  Score=89.66  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=108.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---------------------------------HHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------------------------------HERAT   48 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---------------------------------~~~~~   48 (206)
                      +..+|.-+-+|..+|..|...-+...|..+|.+|-+++ +..                                 .....
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~  563 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE  563 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence            44566666677777777766666666777777777766 541                                 12344


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      .|..+|..|...++++.|+..|+-+++.+|.+..+|..+|.+|...|++..|.+.|.++..++|.+.....-.+.+...+
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            57889999999999999999999999999999999999999999999999999999999999999988888888887777


Q ss_pred             HHHHHHHH
Q psy1039         129 TKRMQENE  136 (206)
Q Consensus       129 ~~~~~~~~  136 (206)
                      +++..+..
T Consensus       644 GkYkeald  651 (1238)
T KOG1127|consen  644 GKYKEALD  651 (1238)
T ss_pred             hhHHHHHH
Confidence            77776443

>KOG4555|consensus

Probab=99.03  E-value=3.6e-08  Score=67.35  Aligned_cols=101  Identities=25%  Similarity=0.398  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH----HHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP----KAL   84 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----~~~   84 (206)
                      +..+-..|..+...|+.+.|++.|.+++.+. |.   .+++|.+++.++.-+|+.++|+.++++++++..+-.    .++
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLA-PE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhc-cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence            4566778999999999999999999999999 99   899999999999999999999999999999976543    468


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      ..+|.+|..+|+-+.|...|+.+-++...
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            89999999999999999999999887644

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.03  E-value=6e-09  Score=85.10  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH---HHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA---TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      ..+|+++..++++|..++..|+|++|+..|+++++++ |+   +.   .+|+++|.||..+|++++|+.++++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999 98   55   459999999999999999999999999973

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.00  E-value=2e-07  Score=70.86  Aligned_cols=167  Identities=14%  Similarity=0.175  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---AL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~   84 (206)
                      .+..|++.|...++.|+|++|++.|+...... |..+....+...++.++++.+++++|+...++-+++.|.++.   ++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            57899999999999999999999999999999 987778899999999999999999999999999999997754   67


Q ss_pred             HHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q psy1039          85 FRRCQAYEAIGK--------FEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQENEQLQN------KVHNMFK  147 (206)
Q Consensus        85 ~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~  147 (206)
                      |-+|.+++..-+        ..+|...|+..+...|+++   ++...+..+...+...+-....+.-      .+..-++
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~  191 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE  191 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            778888766543        3678899999999999985   4444444444444433332221111      2445556


Q ss_pred             HhcC-CCCC---hhhhHHHHhhhhHhcccchh
Q psy1039         148 YVFD-TSAP---MDKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       148 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~~a  175 (206)
                      .+++ .|..   .+....+.+.|..+|-.++|
T Consensus       192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a  223 (254)
T COG4105         192 EVLENYPDTSAVREALARLEEAYYALGLTDEA  223 (254)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence            6665 3333   34444556666666655433

>PRK11906 transcriptional regulator; Provisional

Probab=99.00  E-value=7.2e-09  Score=84.77  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=102.1

Q ss_pred             ccchhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ..+|..+.++..++.+++..         ..-.+|.+..++|++++ |.   ++.++..+|.+....++++.|...|++|
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA  364 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV---DGKILAIMGLITGLSGQAKVSHILFEQA  364 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            67899999999999988865         23567889999999999 99   8999999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      +.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+
T Consensus       365 ~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        365 KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            99999999999999999999999999999999999999986544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.00  E-value=4.8e-09  Score=88.91  Aligned_cols=111  Identities=9%  Similarity=0.040  Sum_probs=94.5

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--cccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG--------DYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDC   70 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~   70 (206)
                      |+..+|+++.++..++.++....        +...+.....+++.+  + |.   .+.++.-+|..+...|++++|...+
T Consensus       368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-~~---~~~~~~ala~~~~~~g~~~~A~~~l  443 (517)
T PRK10153        368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-NV---LPRIYEILAVQALVKGKTDEAYQAI  443 (517)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-cC---ChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            46789999999999888776542        244556666676664  4 55   5678888999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                      ++|+.++| +..+|..+|.++...|++++|...|++++.++|.++.
T Consensus       444 ~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        444 NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999 5889999999999999999999999999999999885

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.99  E-value=2.7e-09  Score=87.10  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA---LFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      .++..++++|.+|+.+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            389999999999999999999999999999999999865   999999999999999999999999997

>KOG0495|consensus

Probab=98.98  E-value=4.1e-08  Score=82.87  Aligned_cols=144  Identities=13%  Similarity=0.016  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ....|.--+....-.++.++|+.+++.+++.. |+   ...+|..+|..+..+++.+.|...|...++..|..+..|..+
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~---f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL  725 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PD---FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL  725 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-Cc---hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence            34566777777888999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +.+-...|+...|...++++.-.+|++...+...-++..+.+...++        .....+++. +|.+...|....
T Consensus       726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a--------~~lmakALQecp~sg~LWaEaI  794 (913)
T KOG0495|consen  726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA--------ELLMAKALQECPSSGLLWAEAI  794 (913)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH--------HHHHHHHHHhCCccchhHHHHH
Confidence            99999999999999999999999999999999988888888888874        446666666 677766665443

>KOG2003|consensus

Probab=98.95  E-value=7.8e-08  Score=78.34  Aligned_cols=116  Identities=22%  Similarity=0.254  Sum_probs=70.0

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+..-.+++++.|.++-..|+.++|+++|-+.-.+- -+   ++..++.++..|..+.+..+|++++.++..+-|.++..
T Consensus       519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~n---n~evl~qianiye~led~aqaie~~~q~~slip~dp~i  594 (840)
T KOG2003|consen  519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LN---NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI  594 (840)
T ss_pred             CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence            344445667777777777777777777766654444 44   56667777777777777777777777777666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      +..+|.+|-+.|+-.+|.+++-......|.+.+...+++.
T Consensus       595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            6666666665555544444444444444444444444433

>KOG0543|consensus

Probab=98.94  E-value=2.7e-08  Score=79.71  Aligned_cols=119  Identities=11%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----D-----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  111 (206)
                      +......|..|++.|+|..|...|++++..-+.    +           ..++.+++.|+.++++|.+|+..+.++|+++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            455667899999999999999999998866331    1           3479999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039         112 PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       112 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (206)
                      |+|..++...+.++..+++...        +...|++++. .|.+..++..+..+--...++.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~--------A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~  342 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDL--------ARDDFQKALKLEPSNKAARAELIKLKQKIREYE  342 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988        5669999999 7888888888777766665553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.93  E-value=4.2e-08  Score=72.72  Aligned_cols=111  Identities=17%  Similarity=0.093  Sum_probs=103.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      ...+..++++|..|=..|-+.-|.--|.+++.+. |.   .+..+..+|..+...|+|+.|.+.|+..++++|.+.-+..
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence            3567789999999999999999999999999999 99   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      ++|..++.-|++.-|...+.+-..-||++|--...
T Consensus       138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW  172 (297)
T COG4785         138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW  172 (297)
T ss_pred             ccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence            99999999999999999999999999999744333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.91  E-value=1.5e-07  Score=70.76  Aligned_cols=127  Identities=20%  Similarity=0.231  Sum_probs=99.8

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKS   73 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~a   73 (206)
                      +|-.+.+.+.+|.+++..|+|++|+..|++.++.. |+++....+++.+|.+++.+..           ..+|+..|+..
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l  116 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL  116 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999 9877788899999999877643           45899999999


Q ss_pred             hhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHHHHHH
Q psy1039          74 LEIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRM  132 (206)
Q Consensus        74 l~l~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~  132 (206)
                      +...|++..+                 -+..|.-|...|.|..|+.-++.+++..|+.+.....   +...+..++...
T Consensus       117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            9999988432                 3446888999999999999999999999998755544   444444444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.90  E-value=5e-09  Score=66.28  Aligned_cols=66  Identities=24%  Similarity=0.357  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ..+.++.++|.+|..+|+|++|+.+|++++.+    .++   ...+++++|.++..+|++++|.+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            37889999999999999999999999999966    222   3568999999999999999999999999875

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.90  E-value=4.3e-09  Score=67.62  Aligned_cols=76  Identities=26%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             ccCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          60 QNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        60 ~~~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      .|+|+.|+..|++++...|.  +...++.+|.|++..|+|++|...+++ ...+|.+......++.++..+++.+++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  466788899999999999999999999 88999999999999999999999988544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.89  E-value=3.4e-08  Score=71.12  Aligned_cols=97  Identities=23%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc
Q psy1039          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ----------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI   94 (206)
Q Consensus        25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~   94 (206)
                      |+.|.+.++.....+ |.   ++..+++-|.++..+.+          +++|+.-|++|+.++|+..++++.+|.+|...
T Consensus         7 FE~ark~aea~y~~n-P~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            677888999999999 98   89999999998877754          56889999999999999999999999999888


Q ss_pred             CC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          95 GK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        95 g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +.           |++|..+|+++...+|++......|....
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            65           78899999999999999988887775553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127|consensus

Probab=98.88  E-value=1.5e-08  Score=88.65  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..|..+|..|.+.+++..|+..|+.+++.+ |.   +..+|..+|.+|...|++..|+..|+++..++|.+..+.|..|.
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-Pk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~  638 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV  638 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCC-ch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence            456679999999999999999999999999 99   89999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      ....+|.|.+|+..+...+............++..+.+....
T Consensus       639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd  680 (1238)
T KOG1127|consen  639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD  680 (1238)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            999999999999999999988777777777777776655543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.88  E-value=6.2e-08  Score=75.38  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHH
Q psy1039          47 ATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQP  119 (206)
Q Consensus        47 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  119 (206)
                      ...++..|..+ +..|+|++|+..|+..++..|++   +.+++++|.+|+..|++++|...|++++...|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46678888876 56799999999999999999998   5899999999999999999999999999998886   56666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039         120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMD  157 (206)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      .++.++..+++...        +...|++++. .|....
T Consensus       222 klg~~~~~~g~~~~--------A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGDTAK--------AKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCCHHH--------HHHHHHHHHHHCcCCHH
Confidence            66777776666666        5557777777 455443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.83  E-value=5.9e-07  Score=65.21  Aligned_cols=151  Identities=16%  Similarity=0.117  Sum_probs=114.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHc
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-EIVPDDPKALFRRCQAYEAI   94 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~l~p~~~~~~~~la~~~~~~   94 (206)
                      ++...+.=+.+..+.-..+.+... |+    ..-.+.+|.....+|++.||...|.+++ -+..+++..+..++.+.+..
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~A-pT----vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~  137 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIA-PT----VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI  137 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhc-hh----HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence            344444456666666666666666 74    5567788888889999999999998877 45677888888899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhccc
Q psy1039          95 GKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE  172 (206)
Q Consensus        95 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (206)
                      +++.+|...+++..+.+|.  .|+-...+++.+...+...+        ++..|+.+++.-...+.+...+..+..+|+.
T Consensus       138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~--------Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYAD--------AESAFEVAISYYPGPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchh--------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence            9999999999998888885  46677777888877777777        4447888888666677788888888888877


Q ss_pred             chhhHHH
Q psy1039         173 MSGAEML  179 (206)
Q Consensus       173 ~~a~~~~  179 (206)
                      +++-..+
T Consensus       210 ~ea~aq~  216 (251)
T COG4700         210 REANAQY  216 (251)
T ss_pred             hHHHHHH
Confidence            6555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.81  E-value=7.1e-08  Score=78.86  Aligned_cols=109  Identities=19%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A  100 (206)
                      ..++++.|+..+++..+.+ |+      ....++.++...++-.+|+..++++++.+|.+...+...|..+...++++.|
T Consensus       181 ~t~~~~~ai~lle~L~~~~-pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD-PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3445555555555555555 43      1223555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus       101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ....+++....|++-..|..|+.++..+++.+.+.-
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            555555555555555555555555555555555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.80  E-value=8.6e-07  Score=68.38  Aligned_cols=126  Identities=12%  Similarity=0.133  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC------------------HHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------------NDKVIE   68 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~------------------~~~A~~   68 (206)
                      -...+.+.+|.++++.|+|++|+..|++.++.. |+++....+++.+|.++...+.                  ..+|+.
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            344556999999999999999999999999999 9877788999999999755541                  357889


Q ss_pred             HHHHHhhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH---HHHHHHHH
Q psy1039          69 DCSKSLEIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIV  128 (206)
Q Consensus        69 ~~~~al~l~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~  128 (206)
                      .|++.++..|++.-+                 -+..|.-|.+.|.|..|+.-++.++...|+.+.....   +...+..+
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l  225 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL  225 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence            999999999987432                 3345788999999999999999999999987655444   44445454


Q ss_pred             HHHHH
Q psy1039         129 TKRMQ  133 (206)
Q Consensus       129 ~~~~~  133 (206)
                      +....
T Consensus       226 g~~~~  230 (243)
T PRK10866        226 QLNAQ  230 (243)
T ss_pred             CChHH
Confidence            44444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=71.64  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      .++.|.-+++.|+|.+|...|..-++..|.+   +.++|+||.+++.+|+|++|...|..+..-.|+++.+-..+-.+-.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999999976   6899999999999999999999999999999988665555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039         127 IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      .+++..+.+.     +...++.+.. .|+........
T Consensus       224 ~~~~l~~~d~-----A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         224 SLGRLGNTDE-----ACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHhcCHHH-----HHHHHHHHHHHCCCCHHHHHHH
Confidence            4444444333     6667877777 56665555443

>KOG2376|consensus

Probab=98.79  E-value=3e-07  Score=76.76  Aligned_cols=161  Identities=14%  Similarity=0.121  Sum_probs=106.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...|++..+++..-..+.+.++|++|+...+.    . +-........+..+.|.+++++.++|+..++   .+++.+..
T Consensus        40 ~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk----~-~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~  111 (652)
T KOG2376|consen   40 SIVPDDEDAIRCKVVALIQLDKYEDALKLIKK----N-GALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK  111 (652)
T ss_pred             hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh----c-chhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence            34455666666666666666666666533222    2 2100122233688889999999999988887   56677777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      .....|.+++++|+|++|...|+...+.+.++.+.......+...-..           ..+..+.... ++++-+....
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-----------~~~~~q~v~~v~e~syel~yN  180 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-----------QVQLLQSVPEVPEDSYELLYN  180 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-----------hHHHHHhccCCCcchHHHHHH
Confidence            888889999999999999999988887766655444333222211111           1113444444 5567888899


Q ss_pred             HHhhhhHhcccchhhHHHHhc
Q psy1039         162 AVNNLVVLAREMSGAEMLLKS  182 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~~~  182 (206)
                      .+-.++..|++++|++-+.+.
T Consensus       181 ~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  181 TACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHHHHhcccHHHHHHHHHHH
Confidence            999999999999999999665

>KOG1308|consensus

Probab=98.77  E-value=1.1e-08  Score=80.18  Aligned_cols=102  Identities=28%  Similarity=0.460  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      .+......+..++..|.+++|++.|..++.++ |.   .+.++..++.+++++++...|+.+|..++.++|+....|-.+
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~ln-p~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr  188 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELN-PP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR  188 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccC-Cc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence            34456667888999999999999999999999 98   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      |.+...+|+|.+|..++..+.+++-+
T Consensus       189 g~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHhcccc
Confidence            99999999999999999999998643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.67  E-value=1.2e-06  Score=77.52  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL   84 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~   84 (206)
                      .+...|..+...|.+.|++++|+..|.+..+.+- |+    ...+..+..++.+.|++++|.+.+..+++.. +.+..++
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~  363 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN  363 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence            3556677777777777777777777777655320 44    3455556666666666666666666666554 3455556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                      ..+...|.+.|++++|.+.|++..+   .+...++.+...+...++..+
T Consensus       364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~  409 (697)
T PLN03081        364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTK  409 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHH
Confidence            6666666666666666666665532   234445555555544444444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=1.5e-07  Score=69.79  Aligned_cols=78  Identities=13%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +|.++|+-+.++..+|..+...|+|+.|.+.|+-.++++ |.   ..-+..|+|..++.-|+|.-|.+.+.+--+-+|.+
T Consensus        91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785          91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-Cc---chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999999999 98   78889999999999999999999999998989887


Q ss_pred             HH
Q psy1039          81 PK   82 (206)
Q Consensus        81 ~~   82 (206)
                      |-
T Consensus       167 Pf  168 (297)
T COG4785         167 PF  168 (297)
T ss_pred             hH
Confidence            53

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.66  E-value=5e-06  Score=76.15  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=22.9

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  108 (206)
                      +-.+|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|.+..
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3333444444444444444443332 2233334444444444444444444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.66  E-value=1e-06  Score=72.19  Aligned_cols=100  Identities=17%  Similarity=0.244  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .+++....++.++...++-.+|++.+.+++... |.   +..++...+..+...++++.|+..+++++.+.|++..+|+.
T Consensus       198 ~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~  273 (395)
T PF09295_consen  198 RDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ---DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ  273 (395)
T ss_pred             cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            346688889999999999999999999999999 98   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      |+.+|..+|+|+.|...+..+--.
T Consensus       274 La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  274 LAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHhcCcCC
Confidence            999999999999999887755433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.65  E-value=5.4e-06  Score=75.92  Aligned_cols=159  Identities=9%  Similarity=0.025  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh----hCCCCHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE----IVPDDPK   82 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----l~p~~~~   82 (206)
                      +...|..+...|.+.|++++|+..|......+- |+    ...|..+...+.+.|++++|.+.|.+...    +.| +..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v  580 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI  580 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence            345666666667777777777777766654321 43    45566666667777777777777776654    233 345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChhhh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDKR  159 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  159 (206)
                      .|..+..+|.+.|++++|.+.|+...+.+ +.+...+..+...+.+.++...        +..+|+.+..  ..++....
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de--------Al~lf~eM~~~Gv~PD~~Ty  652 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF--------ALSIYDDMKKKGVKPDEVFF  652 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH--------HHHHHHHHHHcCCCCCHHHH
Confidence            56666667777777777777777776654 3345555555555555555444        2234444443  13334444


Q ss_pred             HHHHhhhhHhcccchhhHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..+...+...|+.++|.+.+
T Consensus       653 nsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        653 SALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHH
Confidence            44555555555555444433

>KOG4648|consensus

Probab=98.64  E-value=1.6e-07  Score=74.13  Aligned_cols=108  Identities=16%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .-..|..|+++|+|++|+.+|.+++.++|.|+-.+.++|.+|+.+..|..|...+..++.++.....+....+.....++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999999887777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      ...+        +..-+..++. .|...+.+...+..
T Consensus       180 ~~~E--------AKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNME--------AKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHH--------HHHhHHHHHhhCcccHHHHHHHHHh
Confidence            6666        3335555555 56665555554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.62  E-value=7e-07  Score=61.11  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVL  121 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  121 (206)
                      .+.+.+|.++-.+|+.++|+..|++++...++.   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999976544   568999999999999999999999999999888   66777666


Q ss_pred             HHHHHHHHHHHHHH
Q psy1039         122 SRLFAIVTKRMQEN  135 (206)
Q Consensus       122 ~~~~~~~~~~~~~~  135 (206)
                      +......++..++.
T Consensus        82 Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   82 ALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHCCCHHHHH
Confidence            66666666666633

>KOG4234|consensus

Probab=98.62  E-value=8.6e-07  Score=65.07  Aligned_cols=112  Identities=16%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +.-+-.-|.-++..|+|.+|...|..|+.+.|.-+     -.|.++|.+.+.++.++.|+..+.++++++|.+..+....
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            44455678888999999999999999999999753     3677899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039         122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      +.++..+.....        +..-|++.+. +|...+.+...++.-
T Consensus       175 Aeayek~ek~ee--------aleDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  175 AEAYEKMEKYEE--------ALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHhhhhHHH--------HHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            899888877666        4447777777 676666665555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=1.5e-06  Score=68.68  Aligned_cols=119  Identities=13%  Similarity=0.075  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH--Hcc--CHHHHHHHHHHHhhhCCCCHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYL--KQN--QNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~--~~~--~~~~A~~~~~~al~l~p~~~~   82 (206)
                      .+.+.....-.+++..++++.|.+.++..-+.+ .+   ..  ..+++.++.  ..|  ++.+|.-.|++.....|.++.
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD---~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~  202 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQID-ED---SI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK  202 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC---HH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---HH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence            345666667788889999999999999988887 66   33  344444443  344  699999999998888888999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      .+..+|.++..+|+|++|...++.++..+|+++++..++..+...+++.
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999998887777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.61  E-value=5e-07  Score=71.43  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .++......|.+++..|++++|++.+.+.   .      +.++....-.++.++++++.|...++.+-+++.+.+-..+.
T Consensus       100 ~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa  170 (290)
T PF04733_consen  100 SNEIVQLLAATILFHEGDYEEALKLLHKG---G------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLA  170 (290)
T ss_dssp             CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---T------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHcc---C------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            45566777888999999999998887764   2      35666677889999999999999999999999888777777


Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          87 RCQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        87 la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      .|.+.+..|  .+.+|.-.|+......|.++.+...++.++..+++..++..        .+..++. .|.+......++
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~--------~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE--------LLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH--------HHHHHCCC-CCHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHhccCCHHHHHHHH
Confidence            777777777  59999999999888888999999999999999999999554        7777788 788889889999


Q ss_pred             hhhhHhcccchhhHHHH
Q psy1039         164 NNLVVLAREMSGAEMLL  180 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~~  180 (206)
                      .+...+|+..++.+.++
T Consensus       243 v~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  243 VCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             HHHHHTT-TCHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHH
Confidence            98899999876666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.56  E-value=1e-05  Score=58.88  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFR   86 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~   86 (206)
                      ....+.+|+.+...|++.+|..+|++++.----+   ++..+..++.+.+..+++..|...+++..+.+|.  .++....
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3456789999999999999999999998842034   5778899999999999999999999999999996  5788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      +|.++...|.+.+|...|+.++.-.|+- ......+.+....+.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr  208 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGR  208 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcc
Confidence            9999999999999999999999988874 444555555555553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.55  E-value=2.2e-07  Score=51.96  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      .+..+|..|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45555666666666666666666666666666666555553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.53  E-value=9.6e-07  Score=69.67  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--C----
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--D----   79 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~----   79 (206)
                      .++.+...|+.|-..|+|++|...|.++.++..  .+....+..+...+.++.+. ++.+|+.+|++++.+.-  .    
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            366777888888899999999999999988652  12233566777777777555 99999999999998732  1    


Q ss_pred             CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039          80 DPKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (206)
Q Consensus        80 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      -..++..+|.+|... |++++|++.|++++.+....      ......++.++..++++.+        +...|++....
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~--------A~~~~e~~~~~  184 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE--------AIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHH
Confidence            145788899999999 99999999999999974322      2334455666666666655        33455555431


Q ss_pred             ----C-CCh---hhhHHHHhhhhHhcccchh
Q psy1039         153 ----S-APM---DKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       153 ----~-~~~---~~~~~~~~~~~~~~~~~~a  175 (206)
                          + ...   ......+.|++..|+...|
T Consensus       185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A  215 (282)
T PF14938_consen  185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAA  215 (282)
T ss_dssp             CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             hhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence                1 111   2334566677777777433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.53  E-value=1.3e-07  Score=49.73  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=28.6

Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~  101 (206)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68889999999999999999999999998885

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.50  E-value=3.1e-07  Score=51.36  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3678999999999999999999999999999999999988865

>PLN03077 Protein ECB2; Provisional

Probab=98.50  E-value=5.6e-06  Score=74.92  Aligned_cols=160  Identities=11%  Similarity=0.052  Sum_probs=118.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPK   82 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~   82 (206)
                      +.+...|..+...|.+.|+.++|+..|++..+.+- |+    ...+..+-.++.+.|.+++|...|+...+..+  .+..
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~  626 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK  626 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence            34667889999999999999999999998877431 65    34455555678889999999999999874432  3457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      .|..+..++.+.|++++|.+.+++. ...|+ ..++..+-..+..-++.+.        .+...+++++ .|.+......
T Consensus       627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~--------~e~~a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVEL--------GELAAQHIFELDPNSVGYYIL  696 (857)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHH--------HHHHHHHHHhhCCCCcchHHH
Confidence            8889999999999999999999875 45565 4444444444433333332        2335556666 6888999999


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      +++.|...|+++++.+..
T Consensus       697 l~n~ya~~g~~~~a~~vr  714 (857)
T PLN03077        697 LCNLYADAGKWDEVARVR  714 (857)
T ss_pred             HHHHHHHCCChHHHHHHH
Confidence            999999999998776644

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.49  E-value=4.7e-06  Score=73.80  Aligned_cols=158  Identities=10%  Similarity=0.037  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKAL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~   84 (206)
                      +...|..+...|.+.|+.++|++.|++..+.+- |+    ...+..+-.++.+.|..++|.+.|+...+..+  .+...|
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y  465 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN----HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY  465 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence            445677777888888888888888887766431 54    45566666777788888888888887765322  234567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      ..+..++.+.|++++|.+.+++. ...|+ ..++..+...+...++.+.        +...+++++. .|.+......++
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~--------a~~~~~~l~~~~p~~~~~y~~L~  535 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLEL--------GRLAAEKLYGMGPEKLNNYVVLL  535 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHH--------HHHHHHHHhCCCCCCCcchHHHH
Confidence            77788888888888888877654 23333 3345555555555454444        3446677777 677777888899


Q ss_pred             hhhhHhcccchhhHHH
Q psy1039         164 NNLVVLAREMSGAEML  179 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~  179 (206)
                      +.|...|++++|.+.+
T Consensus       536 ~~y~~~G~~~~A~~v~  551 (697)
T PLN03081        536 NLYNSSGRQAEAAKVV  551 (697)
T ss_pred             HHHHhCCCHHHHHHHH
Confidence            9999999998888776

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.47  E-value=3.7e-05  Score=56.54  Aligned_cols=163  Identities=21%  Similarity=0.220  Sum_probs=101.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHhhhCC---CC
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAA-VYLKQNQNDKVIEDCSKSLEIVP---DD   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~l~p---~~   80 (206)
                      .+.....+...|......+++..++..+..++... +.   ........+. ++...|++..|...+.+++...|   ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  166 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PD---PDLAEALLALGALYELGDYEEALELYEKALELDPELNEL  166 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CC---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence            45566677777777777777777777777777766 54   3333334444 67777788888888877777666   34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      ...+...+..+...++++.|...+.+++...|. .......++..+...+....        +...+..+.. .+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~  238 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE--------ALEYYEKALELDPDNAEA  238 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH--------HHHHHHHHHhhCcccHHH
Confidence            555666666677777788888888777777777 56666666666655553344        3335555555 3333344


Q ss_pred             hHHHHhhhhHhcccchhhHHH
Q psy1039         159 RVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       159 ~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ....+..+...+..+.+...+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~  259 (291)
T COG0457         239 LYNLALLLLELGRYEEALEAL  259 (291)
T ss_pred             HhhHHHHHHHcCCHHHHHHHH
Confidence            444444444444344444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.45  E-value=4e-07  Score=47.83  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      +|+++|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1130|consensus

Probab=98.43  E-value=1.9e-06  Score=69.59  Aligned_cols=164  Identities=14%  Similarity=0.137  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCC--
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDD--   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~--   80 (206)
                      ..++-++|++|+-.|+|++||..-+.-+++..  +++...-.++.++|.|+.-+|+|+.|+++|...+.+    ...-  
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            45678899999999999999998887777652  233334567899999999999999999999986544    3332  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA  154 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ....|.+|..|.-+.+++.|+.+..+-+.+...      ...+.-.++..+..++...++.. +-....+.-..+-+...
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-fae~hl~~s~ev~D~sg  353 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-FAELHLRSSLEVNDTSG  353 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHhCCcch
Confidence            456889999999999999999999887765432      23445566777777777666543 11111222223333445


Q ss_pred             ChhhhHHHHhhhhHhcccc
Q psy1039         155 PMDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~  173 (206)
                      ....+..+....+.+|..+
T Consensus       354 elTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  354 ELTARDNLSDLILELGQED  372 (639)
T ss_pred             hhhhhhhhHHHHHHhCCCc
Confidence            7888888888888888764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.42  E-value=1.7e-05  Score=55.42  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      .+..++..|...+..|+|.+|++.|+.+....|-.   ..+.+.+|.+|+..|++++|+..+++-++++|.|+.+...+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            46778999999999999999999999999998854   67899999999999999999999999999999998665443

>KOG3785|consensus

Probab=98.42  E-value=1.1e-05  Score=64.32  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=80.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~   97 (206)
                      -++...+|.-|+..++-....+ .+-  ....-.-+|.|++.+|+|++|+..|.-+..-+..+.+.+.++|.|++.+|.|
T Consensus        31 dfls~rDytGAislLefk~~~~-~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-REE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-hhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            4667889999999999988776 431  2344555899999999999999999999987778889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .+|.....++    |++|--...+..+..+++
T Consensus       108 ~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen  108 IEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            9998776655    555544444433333333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.42  E-value=8.4e-06  Score=58.94  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039          63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF----------EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (206)
Q Consensus        63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  132 (206)
                      |+.|.+.++.....+|.+.+++++-|.++..+.++          ++|+.-|+.++.++|+..++...++..+...+...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            78899999999999999999999999998888655          56788889999999999999999999999887643


Q ss_pred             HH---HHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039         133 QE---NEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus       133 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      ..   ..+.-+++..+|+++.+ .|.+..++..+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            32   23445568889999998 77776666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.41  E-value=7.9e-06  Score=64.50  Aligned_cols=111  Identities=22%  Similarity=0.343  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039           7 NDYNKLKESGNSAFKQ-GDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---   80 (206)
                      ..+..+..+|.+|... |++++|+++|++|+++...  .......++...|.++...|+|++|++.|+++....-++   
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4577888999999999 9999999999999998631  122346678899999999999999999999987653211   


Q ss_pred             ---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          81 ---P-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        81 ---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                         . ..++..+.|++..||...|.+.+++....+|.....
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence               2 345677899999999999999999999999976554

>KOG1130|consensus

Probab=98.39  E-value=2.1e-06  Score=69.41  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHH
Q psy1039           8 DYNKLKESGNSAFKQGD--------------------YETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDK   65 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~--------------------~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~   65 (206)
                      .+.++|++|++|...|+                    ++.|+++|+.-+++..  .++.....++-++|.+|+.+|+|+.
T Consensus       134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~  213 (639)
T KOG1130|consen  134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ  213 (639)
T ss_pred             hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence            46789999999998776                    4556677777666641  1223356688899999999999999


Q ss_pred             HHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--hhHHHHHHHHHHHHHHHHH
Q psy1039          66 VIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE----PTN--KAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        66 A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~l~~~~~~~~~~~~  133 (206)
                      |+..-+.-+.+...+      ..++.++|.|+..+|+|+.|.++|++.+.+.    ...  ......++..+..+++...
T Consensus       214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k  293 (639)
T KOG1130|consen  214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK  293 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence            999888777665433      4578899999999999999999999876542    222  3444567777777776666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         134 ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +.. +-.+-..+-+.+-+.-........+++.+..+|..+.|+...
T Consensus       294 AI~-Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  294 AIT-YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            332 111111122222223567788889999999999999888765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.39  E-value=0.00014  Score=58.59  Aligned_cols=122  Identities=11%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-CCHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-DDPKALFRR   87 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~l   87 (206)
                      +......|..-+..|+|.+|.....+.-+.. +.   ....+..-+.+--.+|+++.|-.+..++-+..+ +...+...+
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr  159 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR  159 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH
Confidence            3344557888888999999999999988887 76   555666677788899999999999999999854 456788889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  134 (206)
                      +.++...|+++.|.....++++..|.++.+.....+++...+.....
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l  206 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL  206 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999988888887766553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=7.2e-07  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4340|consensus

Probab=98.34  E-value=1.7e-05  Score=61.82  Aligned_cols=153  Identities=11%  Similarity=0.074  Sum_probs=106.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1039          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE   98 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~   98 (206)
                      +.+..+|.+||++..--.+.. |.   +--.+..+|.||+...+|..|..+|++...+.|......+..|..+++.+.+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~-p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERS-PR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            367889999999999999998 87   67778899999999999999999999999999999998888999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-----------------HHHHHH-----------HHHHHHHHHHhc
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM-----------------QENEQL-----------QNKVHNMFKYVF  150 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~  150 (206)
                      +|........    +++..+...-.+...++-.+                 .+...+           .+.+.+-|+.+.
T Consensus        96 DALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl  171 (459)
T KOG4340|consen   96 DALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL  171 (459)
T ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence            9887765443    22333332222222211100                 000000           012344556666


Q ss_pred             C-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         151 D-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      . ..-+.-.....+-++.+.++++.|++.+
T Consensus       172 qvsGyqpllAYniALaHy~~~qyasALk~i  201 (459)
T KOG4340|consen  172 QVSGYQPLLAYNLALAHYSSRQYASALKHI  201 (459)
T ss_pred             hhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence            5 4455555666777777777777777665

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.34  E-value=1.6e-06  Score=45.36  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p   78 (206)
                      ++.+|.+++.+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.33  E-value=1.6e-06  Score=45.33  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      +.+++.+|.++..+|++++|+++|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3785|consensus

Probab=98.32  E-value=2.4e-05  Score=62.36  Aligned_cols=163  Identities=16%  Similarity=0.070  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh--------------hh
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--------------EI   76 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------------~l   76 (206)
                      .-..+|..+++.|+|++|+..|.-+..-++|    .+.++.++|.|++.+|.|.+|.....++-              ++
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccCCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence            4455799999999999999999999886633    58899999999999999999988766542              11


Q ss_pred             CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          77 VP------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN  144 (206)
Q Consensus        77 ~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  144 (206)
                      +.            +..+--..+|.+++..-.|++|+..|++++.-+|+...+...++.++.++.-..-...    -...
T Consensus       135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqe----vl~v  210 (557)
T KOG3785|consen  135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQE----VLKV  210 (557)
T ss_pred             CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHH----HHHH
Confidence            21            1122345577788888899999999999999999999888889888887765544333    1122


Q ss_pred             HHHHhcCCCCChhhhHHHHhhhhHh--ccc-chhhHHHHhcch
Q psy1039         145 MFKYVFDTSAPMDKRVTAVNNLVVL--ARE-MSGAEMLLKSGV  184 (206)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~a~~~~~~~~~  184 (206)
                      +.+.   .|++......++-.+...  |+- ++-.+.+++|..
T Consensus       211 YL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~  250 (557)
T KOG3785|consen  211 YLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID  250 (557)
T ss_pred             HHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence            2222   355555555444444433  332 334444554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.31  E-value=5.6e-05  Score=53.50  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      .+...|......|+...++..+.+++.+..+.                  ......+...++..+...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34445777788899999999999999987311                  123445677788888899999999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        73 al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ++.++|.+..++..+-.++...|+..+|...|+++..
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.31  E-value=0.00023  Score=52.27  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALK--VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .......+..+...+++..++..+...+.  .. +.   ....+...+..+...+.+..++..+..++...+........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELL-PN---LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL  134 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc-cc---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence            56778889999999999999999999987  55 66   78889999999999999999999999999998887666666


Q ss_pred             HHH-HHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-ChhhhH
Q psy1039          87 RCQ-AYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA-PMDKRV  160 (206)
Q Consensus        87 la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~  160 (206)
                      .+. ++...|+++.|...+.+++..+|.   ...............+....        +...+.++.. .+. ......
T Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE--------ALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH--------HHHHHHHHHhhCcccchHHHH
Confidence            677 899999999999999999887773   22333333333222333333        4456677766 455 467777


Q ss_pred             HHHhhhhHhcccchhhHHH
Q psy1039         161 TAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..+..+...+.+..+...+
T Consensus       207 ~~~~~~~~~~~~~~a~~~~  225 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYY  225 (291)
T ss_pred             HhhHHHHHcccHHHHHHHH
Confidence            7888888887776666666

>KOG4642|consensus

Probab=98.30  E-value=3.8e-06  Score=63.22  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      +.-+-.-|..++.-.+|..|+..|.+++.++|..+..|-+.+.|++++.+|+.+.....++++++|+....+..++.+..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            33344567788888999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q psy1039         127 IVTKRMQENE  136 (206)
Q Consensus       127 ~~~~~~~~~~  136 (206)
                      ..+.+..+..
T Consensus        90 ~s~~~~eaI~   99 (284)
T KOG4642|consen   90 QSKGYDEAIK   99 (284)
T ss_pred             hhccccHHHH
Confidence            8888777554

>PLN03077 Protein ECB2; Provisional

Probab=98.29  E-value=8.1e-05  Score=67.53  Aligned_cols=157  Identities=13%  Similarity=0.052  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHH----------------------------------HHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL----------------------------------KNR   53 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~----------------------------------~~l   53 (206)
                      +...|..+...|...|++++|+..|++.+....|+   .....                                  ..+
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL  530 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL  530 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence            34456666677777777777777777766432254   21111                                  123


Q ss_pred             HHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHH
Q psy1039          54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        54 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      -..|.+.|++++|...|+..    +.+..+|..+...|...|+.++|...|++...  ..|+.......+ ..+...+..
T Consensus       531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g~v  605 (857)
T PLN03077        531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMV  605 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcChH
Confidence            35677778888888888765    55777888888899999999999999998776  355544433333 334444554


Q ss_pred             HHHHHHHHHHHHHHHHHhcC---CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         132 MQENEQLQNKVHNMFKYVFD---TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ++        +..+|+.+..   ..++..........+...|+.++|.+.+-
T Consensus       606 ~e--------a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~  649 (857)
T PLN03077        606 TQ--------GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN  649 (857)
T ss_pred             HH--------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            44        4446766662   35566777788888888888888877664

>KOG1915|consensus

Probab=98.28  E-value=0.00014  Score=60.16  Aligned_cols=162  Identities=11%  Similarity=0.079  Sum_probs=135.5

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +.-+...|...|.--..+++++.|-..|++|+..+ ..   +..+|...+.+-++......|...+++|+.+-|.-...|
T Consensus        69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW  144 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence            34456677788888888999999999999999999 87   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHh
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVN  164 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (206)
                      +.....-..+|+...|.+.|++=+...|+.......+ ....+.++-+.        +..+|.+....-++...+...+.
T Consensus       145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI-~fElRykeier--------aR~IYerfV~~HP~v~~wikyar  215 (677)
T KOG1915|consen  145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFI-KFELRYKEIER--------ARSIYERFVLVHPKVSNWIKYAR  215 (677)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHhhHHHH--------HHHHHHHHheecccHHHHHHHHH
Confidence            9999999999999999999999999999865443333 33333333333        56688888886678888999999


Q ss_pred             hhhHhcccchhhHHH
Q psy1039         165 NLVVLAREMSGAEML  179 (206)
Q Consensus       165 ~~~~~~~~~~a~~~~  179 (206)
                      .-...|...-+.+.+
T Consensus       216 FE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  216 FEEKHGNVALARSVY  230 (677)
T ss_pred             HHHhcCcHHHHHHHH
Confidence            988888877776666

>KOG4555|consensus

Probab=98.27  E-value=3.7e-05  Score=52.84  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK----AIQPVLS  122 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~  122 (206)
                      +..+...|.+....|+.+.|++.|.+++.+-|..+.+|.+++.++.-.|+.++|...+.+++++..+..    .+...-+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            344666788899999999999999999999999999999999999999999999999999999876543    3444556


Q ss_pred             HHHHHHHHHHHH
Q psy1039         123 RLFAIVTKRMQE  134 (206)
Q Consensus       123 ~~~~~~~~~~~~  134 (206)
                      .++...++...+
T Consensus       123 ~lyRl~g~dd~A  134 (175)
T KOG4555|consen  123 LLYRLLGNDDAA  134 (175)
T ss_pred             HHHHHhCchHHH
Confidence            666666655553

>KOG2053|consensus

Probab=98.21  E-value=0.0002  Score=62.89  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=111.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~   97 (206)
                      -....+++.+|+....+.++.. |+   ...+....|..+.++|+.++|..+++..-...+++...+-.+-.||..+|++
T Consensus        18 d~ld~~qfkkal~~~~kllkk~-Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKH-PN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence            3456789999999999999999 99   7888888999999999999999888777777888888999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhH
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVV  168 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (206)
                      ++|...|+++...+|+ ......+...+.+.+.+.+.+.    .+.++|+-+   |...-+-....-.+++
T Consensus        94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk----aa~~LyK~~---pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen   94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK----AALQLYKNF---PKRAYYFWSVISLILQ  156 (932)
T ss_pred             hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhC---CcccchHHHHHHHHHH
Confidence            9999999999999999 7788888888877777665333    455666632   4443333333333333

>KOG1310|consensus

Probab=98.19  E-value=9.4e-06  Score=67.48  Aligned_cols=112  Identities=25%  Similarity=0.360  Sum_probs=99.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCCCCH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~   81 (206)
                      -|...+.+...|+-.+..+.+..|+..|.+++... |.   ...++.+++.++++.+   +.-.|+.++..+++++|...
T Consensus       370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~-~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~  445 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV-PD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ  445 (758)
T ss_pred             chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc-cc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence            36778889999999999999999999999999999 98   8999999999998874   67789999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      +++++++.++..++++.+|..+...+....|.+......
T Consensus       446 kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  446 KAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence            999999999999999999999988877778865544333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.12  E-value=0.0011  Score=53.50  Aligned_cols=169  Identities=14%  Similarity=0.203  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .....+..-+...-..|+++.|-.+..++.++. +++  +......++......|+++.|.....+++++.|.++.+..-
T Consensus       116 ~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrL  192 (400)
T COG3071         116 QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDD--TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRL  192 (400)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHH
Confidence            334455666677888999999999999999994 432  46667789999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR-LFA-IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      .-.+|...|+|.+....+.+.-+..--+.+-...+.. .+. .+.+......  ......+.+.... .-.+..+....+
T Consensus       193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~--~~gL~~~W~~~pr~lr~~p~l~~~~a  270 (400)
T COG3071         193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG--SEGLKTWWKNQPRKLRNDPELVVAYA  270 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc--chHHHHHHHhccHHhhcChhHHHHHH
Confidence            9999999999999988887766544322222222211 111 1111111111  0014456666655 356688889999


Q ss_pred             hhhhHhcccchhhHHHH
Q psy1039         164 NNLVVLAREMSGAEMLL  180 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~~  180 (206)
                      ..+.+.|.+++|.+.+.
T Consensus       271 ~~li~l~~~~~A~~~i~  287 (400)
T COG3071         271 ERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             HHHHHcCChHHHHHHHH
Confidence            99999999999988883

>KOG2796|consensus

Probab=98.09  E-value=8.4e-05  Score=57.05  Aligned_cols=111  Identities=20%  Similarity=0.247  Sum_probs=93.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      +|.++.....+|...++-|+-+.|..+|++.-+...  .+.........+.+..|.-.++|.+|...|.+++..+|.++-
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            367788899999999999999999999995433220  011124556677888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      +..++|.|+..+|+..+|++.++.++...|...
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999754

>KOG4340|consensus

Probab=98.08  E-value=0.00011  Score=57.53  Aligned_cols=129  Identities=11%  Similarity=0.071  Sum_probs=107.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--------
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--------   75 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------   75 (206)
                      -+|.+-..+..+|.+|+...+|..|-++|++...+. |.   .....+.-+..+++.+.+..|+........        
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~  114 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PE---LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRV  114 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHH
Confidence            467677789999999999999999999999999999 98   777777788888888888888765543322        


Q ss_pred             --h--------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          76 --I--------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        76 --l--------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                        +                    -|  ...+...+.|.+.++.|+++.|++-|+.+++...-++-...+++.++.+.+++
T Consensus       115 lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy  194 (459)
T KOG4340|consen  115 LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY  194 (459)
T ss_pred             HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH
Confidence              1                    12  23556788899999999999999999999999999999999999999988888


Q ss_pred             HHHHH
Q psy1039         132 MQENE  136 (206)
Q Consensus       132 ~~~~~  136 (206)
                      ..+..
T Consensus       195 asALk  199 (459)
T KOG4340|consen  195 ASALK  199 (459)
T ss_pred             HHHHH
Confidence            77655

>KOG2053|consensus

Probab=98.08  E-value=0.00018  Score=63.22  Aligned_cols=173  Identities=13%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++.+|+..-+....|.++++.|+.++|..+++..-... ++   +-..+..+-.||..++++++|...|++++..+|. .
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e  110 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E  110 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence            45689999999999999999999999998887776666 77   6777888999999999999999999999999999 8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCC---Ch
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSRLFAIVTKRMQEN-EQLQNKVHNMFKYVFDTSA---PM  156 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~  156 (206)
                      +..+.+=.+|.+.++|.+-.+.--+.-+..|+++. .|..+..+...+....... +..-..+..++++.+..++   ..
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~  190 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE  190 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence            88888889999999997766555555556787763 4555544444433322211 1222335566677666332   22


Q ss_pred             hhhHHHHhhhhHhcccchhhHHH
Q psy1039         157 DKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .-.....-++-.+|++++|+..+
T Consensus       191 aE~~Lyl~iL~~~~k~~eal~~l  213 (932)
T KOG2053|consen  191 AEIILYLLILELQGKYQEALEFL  213 (932)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHH
Confidence            22333444555667778888777

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.08  E-value=3.3e-06  Score=44.35  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=28.7

Q ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHH
Q psy1039          31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI   67 (206)
Q Consensus        31 ~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~   67 (206)
                      +|+++|+++ |+   ++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~-P~---n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELN-PN---NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHC-CC---CHHHHHHHHHHHHHCcCHHhhc
Confidence            378889999 98   8999999999999999998885

>KOG2376|consensus

Probab=98.07  E-value=0.00028  Score=59.58  Aligned_cols=126  Identities=12%  Similarity=0.225  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..++.--+.+...|+|++|+....+.+... |+   ...+++..-.|+.+.++|++|+...++-....-.+.. .|..|.
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAY   87 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAY   87 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHH
Confidence            456666677888999999999999999999 98   8888999999999999999998544432222222222 279999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      |.++++..++|.++++   .+++.++.+...-+.+..+++.+.+        +...|+.+..
T Consensus        88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yde--------aldiY~~L~k  138 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDE--------ALDIYQHLAK  138 (652)
T ss_pred             HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHH--------HHHHHHHHHh
Confidence            9999999999999998   5677777788888888889998888        5557777755

>PRK10941 hypothetical protein; Provisional

Probab=98.05  E-value=3.1e-05  Score=60.41  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        44 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      ..-.....++-.+|...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|++..|...++..++..|+++.+......
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            34556778888999999999999999999999999999999999999999999999999999999999999988665544


Q ss_pred             HH
Q psy1039         124 LF  125 (206)
Q Consensus       124 ~~  125 (206)
                      +.
T Consensus       258 l~  259 (269)
T PRK10941        258 IH  259 (269)
T ss_pred             HH
Confidence            43

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.05  E-value=0.00022  Score=56.23  Aligned_cols=119  Identities=11%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      +|....+...+.+..+.|-..|.+|..-. +-   +..+|...|..-+. .++.+.|...|+.+++..|.+...|.....
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~---~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RC---TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            56667777777788999999999998655 54   67788888988667 456666999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHHH
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~  133 (206)
                      -+...++.+.|...|++++..-|...   .++..........|+...
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~  125 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES  125 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999877655   444444444444444333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.99  E-value=0.00046  Score=50.66  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH--HHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA--LFRR   87 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~--~~~l   87 (206)
                      .+...++..++..|++++|+..++.++... .+....+-+-.++|.+....|++++|+..+....   .++..+  --.+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w~~~~~elr  165 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIK---EESWAAIVAELR  165 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccHHHHHHHHh
Confidence            345677889999999999999999999876 5545566778889999999999999998886532   233333  4567


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      |.++...|+-++|...|++++..+++
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHccCC
Confidence            99999999999999999999998744

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.97  E-value=7.2e-05  Score=43.31  Aligned_cols=47  Identities=17%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      +.+|.+|..++++|+|++|..+.+.+++.+|+|..+......+...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            46777888888888888888888888888888887766665554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.97  E-value=1.6e-05  Score=41.48  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p   78 (206)
                      |+.+|.+|..+|++++|+..|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33444444444444444444444444443

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00018  Score=56.01  Aligned_cols=126  Identities=13%  Similarity=0.144  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ..-+.-+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+..    .|.+.......+ +..+
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~-l~a~  209 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG-LQAQ  209 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH-HHHH
Confidence            34455667778899999999999999999999999999999999999999999877654    344333322222 1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         128 VTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      +.-..++...  ......-++...+|++.+.+..++..+...|+.++|++.++
T Consensus       210 i~ll~qaa~~--~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll  260 (304)
T COG3118         210 IELLEQAAAT--PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL  260 (304)
T ss_pred             HHHHHHHhcC--CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            2221221100  00233444555589999999999999999999999999886

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.94  E-value=0.00015  Score=61.33  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=83.3

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-   80 (206)
                      ...|+.+-.++..|..+...|+.++|++.|++++... .+ +....-+++.+|-|+..+++|++|..+|.+..+.+.-+ 
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk  339 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK  339 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence            3468888889999999999999999999999888644 32 23456778889999999999999999999988865543 


Q ss_pred             HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q psy1039          81 PKALFRRCQAYEAIGKF-------EEAYTDAKHIHRV  110 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~  110 (206)
                      .-..|..|.|+..+|+.       ++|.+.+.++-.+
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            33455668899999988       7777777766554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.92  E-value=0.001  Score=60.63  Aligned_cols=162  Identities=10%  Similarity=0.040  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------   80 (206)
                      ......+|..++..|++++|...+++++... |..  .........+|.++...|++++|...+.+++......      
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            4455567888999999999999999999865 431  1123456789999999999999999999998764321      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      ..++..+|.++...|++++|...+++++.+....        ..+...++.+....++...+..        .+..+.. 
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~--------~~~~al~~  602 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ--------CARKGLEV  602 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH--------HHHHhHHh
Confidence            2456788999999999999999999988863221        1223345555656666655433        3333322 


Q ss_pred             -----CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 -----TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                           +..........+.++...|+++.|...+
T Consensus       603 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l  635 (903)
T PRK04841        603 LSNYQPQQQLQCLAMLAKISLARGDLDNARRYL  635 (903)
T ss_pred             hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                 1122333445677778888887776655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.91  E-value=2.2e-05  Score=40.91  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      ++|+.+|.++..+|++++|...|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999954

...

>KOG3081|consensus

Probab=97.87  E-value=0.0016  Score=50.08  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-----------c-------------HHHHHHHHHHHHHHHHc---
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----------S-------------HERATCLKNRAAVYLKQ---   60 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-----------~-------------~~~~~~~~~la~~~~~~---   60 (206)
                      +....-.-|.++.+.|++++|+........+. -.           +             ...-..+..+|.++.+.   
T Consensus       107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  107 NLIDLLLAAIIYMHDGDFDEALKALHLGENLE-AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHHHHHhhHHhhcCCChHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence            34455666788888899999887766522221 00           0             00111223344433332   


Q ss_pred             -cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          61 -NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        61 -~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                       +++.+|.-+|+..-.--|..+......+.|+..+|+|++|...++.++..++++++...++..+-...|
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG  255 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence             235555555555555455555555555566666666666666666666666665555555544444433

>KOG0551|consensus

Probab=97.83  E-value=0.00046  Score=54.59  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      ..+..+-.-|.-|++.++|..|+..|.++|..+-.+    .-.|.++|-|...+|+|..|+..+.+++.++|.+..+...
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            467778889999999999999999999999875443    4468899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1039         121 LSRLFAIVTKRMQEN  135 (206)
Q Consensus       121 l~~~~~~~~~~~~~~  135 (206)
                      -+.+...++....+.
T Consensus       159 ~Akc~~eLe~~~~a~  173 (390)
T KOG0551|consen  159 GAKCLLELERFAEAV  173 (390)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            888888888866643

>KOG1915|consensus

Probab=97.80  E-value=0.0035  Score=52.10  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      +..|...+....++.+...|-..+-.|+-.+ |.    ..++...-..-.++++++.+...|++-++..|.+..+|...|
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK----~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya  478 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PK----DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA  478 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cc----hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence            3444444555555555555555555555555 53    233333333444555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ..-..+|+.+.|...|+-|+..
T Consensus       479 ElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  479 ELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcC
Confidence            5555555555555555555543

>KOG3824|consensus

Probab=97.80  E-value=0.00087  Score=52.74  Aligned_cols=86  Identities=17%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        41 p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      |.....+..-.+.|.-..+.|+.++|...|+.|+.+.|++++++...|.....-.+.-+|-.+|-+++.++|.|.++..+
T Consensus       110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            43334455566667777789999999999999999999999999999999988899999999999999999999888777


Q ss_pred             HHHHHH
Q psy1039         121 LSRLFA  126 (206)
Q Consensus       121 l~~~~~  126 (206)
                      ..+-.-
T Consensus       190 R~RT~p  195 (472)
T KOG3824|consen  190 RARTTP  195 (472)
T ss_pred             hhccch
Confidence            655443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.79  E-value=0.0025  Score=53.94  Aligned_cols=106  Identities=15%  Similarity=0.085  Sum_probs=85.0

Q ss_pred             cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHHHcCCH
Q psy1039          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKF   97 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~la~~~~~~g~~   97 (206)
                      ..+.+.|.+.+....... |+   +...++..|..+...|+.++|++.|++++......    .-+++.+|.++..+++|
T Consensus       246 ~~~~~~a~~lL~~~~~~y-P~---s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w  321 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRY-PN---SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW  321 (468)
T ss_pred             CCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence            457788999999999999 99   88889999999999999999999999988544332    34688899999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHH
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKR  131 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~  131 (206)
                      ++|..++.+..+.+.-+......+. -++..+++.
T Consensus       322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  322 EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999999997776555444443 333344433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0376|consensus

Probab=97.78  E-value=6.5e-05  Score=61.88  Aligned_cols=110  Identities=19%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      ..-+-+.-.+.-+.|+.|+..|.+|++++|+....+-+++.++...++|..|+..+.++++++|........-+.....+
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34456677788899999999999999999999999999999999999999999999999999999988888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039         129 TKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      +...++-.        .|+.... .|.+...+....+|-
T Consensus        86 ~~~~~A~~--------~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   86 GEFKKALL--------DLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHH--------HHHHhhhcCcCcHHHHHHHHHHH
Confidence            77777333        4444444 566666555555443

>KOG4507|consensus

Probab=97.78  E-value=6.5e-05  Score=63.41  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI   94 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~   94 (206)
                      .|......|+...|+.++..|+... |..  ......++|..+.+.|-.-.|-..+.+++.++..-+-.++.+|..+..+
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~-p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l  689 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLA-PLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL  689 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccC-hhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence            3444445899999999999999998 852  4556889999999999999999999999999988888899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        95 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+.+.|++.|+.++.++|+++.....+..+.
T Consensus       690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  690 KNISGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             hhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999999999999999988876553

>KOG3081|consensus

Probab=97.76  E-value=0.0015  Score=50.22  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039          10 NKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus        10 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      ..+.+++..+.+    .+.+++|.-+|+...+-. |.   +.....+.+.|++.+|+|++|...++.++.-++.+++++.
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~---T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PP---TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CC---ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            344555554443    457889999999988854 33   5888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHH-HHHHHHHHhcCCCChhH
Q psy1039          86 RRCQAYEAIGKFEEA-YTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        86 ~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~  117 (206)
                      ++-.+-..+|.-.++ .+.+.+....+|+++-+
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999999988665 45567777778887654

>KOG1070|consensus

Probab=97.75  E-value=0.0017  Score=60.00  Aligned_cols=129  Identities=16%  Similarity=0.074  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFRRC   88 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~la   88 (206)
                      .+..+.-+|-..+.+++|.++|+..++.. .+   ....|...|..+++.++-+.|...+.+|++--|.  +.+..-..|
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            34445556666666777777777776666 54   5666777777777777777777777777776665  556666667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..-++.|+.+.+...|+-.+.-+|.-.+.|..+.+.....++...        +..+|++++.
T Consensus      1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~--------vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY--------VRDLFERVIE 1662 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH--------HHHHHHHHHh
Confidence            777777777777777777777777777777666665554444333        5557777766

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.74  E-value=6.2e-05  Score=38.76  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      +++++|.++...|++++|...|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.73  E-value=0.006  Score=46.84  Aligned_cols=128  Identities=12%  Similarity=0.169  Sum_probs=100.4

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhh
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--------NDKVIEDCSKSLEI   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~l   76 (206)
                      +|-..++...++-.+++.++|++|+...++-+.+. |+++.-.-+++.+|.+++..-+        -..|+..|...+..
T Consensus        67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r  145 (254)
T COG4105          67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR  145 (254)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH
Confidence            34457788999999999999999999999999999 9866677888999999876532        45888999999999


Q ss_pred             CCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH---HHHHHHHHHHHH
Q psy1039          77 VPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL---SRLFAIVTKRMQ  133 (206)
Q Consensus        77 ~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~  133 (206)
                      .|++.-+                 =...|.-|.+.|.|-.|+.-++.+++..|+.+.....+   ..++..++-...
T Consensus       146 yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~  222 (254)
T COG4105         146 YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE  222 (254)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH
Confidence            9987321                 12357889999999999999999999988876555554   444445554444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.73  E-value=0.0035  Score=57.26  Aligned_cols=169  Identities=11%  Similarity=-0.044  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH-
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-   81 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-   81 (206)
                      +......+..++..|++++|...+..+.... +.      ..........+|.++...|++++|...+++++...|... 
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQEL-KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY  487 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhc-cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence            3345667888899999999999999887653 21      122345566688899999999999999999998655432 


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          82 ----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        82 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                          .+...+|.++...|++++|...+++++.......      .....++.++...++...+.....+ +....+....
T Consensus       488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~-al~~~~~~~~  566 (903)
T PRK04841        488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEK-AFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHhcc
Confidence                3567789999999999999999999987644321      2334556666666666664432221 1112221111


Q ss_pred             C--CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 T--SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .  +.........+..+...|++++|...+
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  596 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCA  596 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            1  112223445677888889998887666

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.69  E-value=0.0049  Score=41.72  Aligned_cols=96  Identities=23%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccc--cC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-------hhCC
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-------EIVP   78 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~--p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-------~l~p   78 (206)
                      ..|.--+..|-|++|...+.++++...  |.      ...++.++-.++.++..+|+|++++....+++       +++.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            345566778999999999999999752  21      24567778889999999999998887777766       4455


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          79 DD----PKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        79 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      +.    ..+.+++|.++..+|+.++|.+.|+.+-+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            54    44667899999999999999999988754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2610|consensus

Probab=97.69  E-value=0.0026  Score=50.73  Aligned_cols=156  Identities=10%  Similarity=0.011  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-CCCCHHHHH---HH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VPDDPKALF---RR   87 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~~~~~~~---~l   87 (206)
                      ....+...+.+|++.+|-..+++.++-. |.   +.-++..--.+++.+|+...-...+++.+-. +|+-|-.-|   -.
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~-Pt---Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy  181 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDY-PT---DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY  181 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhC-ch---hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence            3344566778899999999999999988 97   6666666777888899999999999998866 777644333   45


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCC---hhhhHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT--SAP---MDKRVTA  162 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~  162 (206)
                      +.++...|-|++|.+..+++++++|.+.-+......+....++.++...        +..+.-++  ...   ..-.-..
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e--------FM~~ted~Wr~s~mlasHNyWH~  253 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE--------FMYKTEDDWRQSWMLASHNYWHT  253 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH--------HHHhcccchhhhhHHHhhhhHHH
Confidence            7788999999999999999999999999999998888887777666332        44333331  111   1122335


Q ss_pred             HhhhhHhcccchhhHHH
Q psy1039         163 VNNLVVLAREMSGAEML  179 (206)
Q Consensus       163 ~~~~~~~~~~~~a~~~~  179 (206)
                      +.++++.+.++.|.+.|
T Consensus       254 Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIY  270 (491)
T ss_pred             HHhhhcccchhHHHHHH
Confidence            66777777777766654

>KOG2796|consensus

Probab=97.66  E-value=0.0027  Score=48.99  Aligned_cols=125  Identities=13%  Similarity=0.086  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh----hhCC--CCHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVP--DDPK   82 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~p--~~~~   82 (206)
                      ....+.+..++.-.|.|.-.+..+.+.++.+ |.  ..+.+...+|...++.|+.+-|..+|+++-    .++.  .+.-
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~  253 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PE--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM  253 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-Cc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence            4567788888999999999999999999988 53  167778889999999999999999999543    3332  2344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      +..+.+.++....+|.+|...+.+++..||.++.+.+..+.+...+++..++.+
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence            666778888888999999999999999999999999999999999999888555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0056  Score=47.93  Aligned_cols=161  Identities=11%  Similarity=0.063  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-CHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFR   86 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~   86 (206)
                      ..+.-+..|......|++.+|...|..++... |+   +..+...++.||...|+.+.|...+...=.-..+ .......
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a  208 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA  208 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence            34456777889999999999999999999999 98   8899999999999999999988877652211111 1111111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL  166 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (206)
                      .-..+.+.....+. ..+++.+..+|+|..+...++..+...++.+.+..    ....++++-.. ..+...+..+...+
T Consensus       209 ~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale----~Ll~~l~~d~~-~~d~~~Rk~lle~f  282 (304)
T COG3118         209 QIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALE----HLLALLRRDRG-FEDGEARKTLLELF  282 (304)
T ss_pred             HHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhccc-ccCcHHHHHHHHHH
Confidence            12333444443333 34566677889998888888888887777666432    23334444333 44556666666666


Q ss_pred             hHhcccchhhHH
Q psy1039         167 VVLAREMSGAEM  178 (206)
Q Consensus       167 ~~~~~~~~a~~~  178 (206)
                      --.|.-+-....
T Consensus       283 ~~~g~~Dp~~~~  294 (304)
T COG3118         283 EAFGPADPLVLA  294 (304)
T ss_pred             HhcCCCCHHHHH
Confidence            666654433333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.64  E-value=0.00078  Score=56.10  Aligned_cols=121  Identities=12%  Similarity=0.045  Sum_probs=87.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------------HHHHHHHHHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------------HERATCLKNRAAVYL   58 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------------~~~~~~~~~la~~~~   58 (206)
                      ||+.+|+-+.++..++....  ....+|..+|+++++..+ ..                      .....+...+|.|..
T Consensus       194 ALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE-~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar  270 (539)
T PF04184_consen  194 ALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGE-ASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR  270 (539)
T ss_pred             HHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHH-HhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence            45667777777776665422  235677788888777552 10                      012345677999999


Q ss_pred             HccCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHHHHHHH
Q psy1039          59 KQNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTNKAIQPVLSRL  124 (206)
Q Consensus        59 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~  124 (206)
                      ++|+..+|++.++..++.+|.  +..++.++..++..++.|.++...+.+.-.+ -|++..+...-+.+
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            999999999999999988775  5678999999999999999999999887544 34555444444443

The molecular function of this protein is uncertain.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.61  E-value=0.002  Score=41.79  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHH
Q psy1039          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~  131 (206)
                      .+..+++.+..+|++..+.+.+|..+...|++++|.+.+-.++..+++.  ..+...+-.+...++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            3566788889999999999999999999999999999999999988765  56666666666666653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.60  E-value=0.0026  Score=46.65  Aligned_cols=102  Identities=19%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CCCHHHH--
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPKAL--   84 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~--   84 (206)
                      -.++..+|..|.+.|+++.|++.|.++.+.. .........++++-.+.+..++|.....+..++-.+-  +.++...  
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4678899999999999999999999998877 5544567788888888899999999999999887553  3344333  


Q ss_pred             --HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039          85 --FRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        85 --~~la~~~~~~g~~~~A~~~~~~al~~~  111 (206)
                        ...|..+...++|..|...|-.+....
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence              234778888999999999887665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.58  E-value=0.01  Score=41.86  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----------------------PKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      +...|......++...++..+.+++.+-...                      ..+...++..+...|++++|...++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444656667788889999999988774211                      234666788899999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +..+|.+..++..+..++...++...+...+. .+...+..-++
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~-~~~~~l~~elg  131 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYE-RYRRRLREELG  131 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH-HHHHHHHHHHS
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHH-HHHHHHHHHhC
Confidence            99999999999999999999999888666333 33344444334

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.58  E-value=0.0026  Score=53.10  Aligned_cols=139  Identities=14%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--------------
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--------------   79 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--------------   79 (206)
                      ..-....+..+.+.-++.-.+|++++ |+   .+.+|..+|.-  ...-..+|...|+++++....              
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~-pd---CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEIN-PD---CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhh-hh---hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            44455677889999999999999999 98   78888877753  233456677777666644210              


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          80 -----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        80 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                                 ...+..++|.|..++|+.++|++.++..++..|.  +..++.++..++..++...+...        .+
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~--------lL  318 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA--------LL  318 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH--------HH
Confidence                       0335678999999999999999999999988775  57789999999988888877443        44


Q ss_pred             HHhcC--CCCChhhhHHHHhhh
Q psy1039         147 KYVFD--TSAPMDKRVTAVNNL  166 (206)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~  166 (206)
                      .+--+  .|....+....+-..
T Consensus       319 ~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  319 AKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHhccccCCchHHHHHHHHHHH
Confidence            44322  255666666654443

The molecular function of this protein is uncertain.

>KOG2471|consensus

Probab=97.57  E-value=0.00033  Score=58.09  Aligned_cols=127  Identities=11%  Similarity=0.047  Sum_probs=100.5

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh----
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE----   75 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----   75 (206)
                      ..+.+.+++..+..++..|+|.+|.+.+...--...|..     -.....|.++|.+++.+|.|.-+.-+|.+|++    
T Consensus       236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999887655322110210     01233467899999999999999999999996    


Q ss_pred             -----hCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          76 -----IVP---------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        76 -----l~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                           +.|         ......|+.|..+...|+.-.|.++|.++......+|.+|..++++.....+.
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~  385 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK  385 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence                 122         23567999999999999999999999999999999999999999998765543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.56  E-value=0.00052  Score=39.70  Aligned_cols=41  Identities=29%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ++++.+|..++++|+|.+|..+++.+++++|+|..+.....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            35778899999999999999999999999999987755443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.55  E-value=0.0015  Score=59.29  Aligned_cols=114  Identities=13%  Similarity=0.162  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-------QNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ...+++....|++|+..|++...-. |.+...-++.+..|.+....-       .+.+|+.-|++ +.--|.-+--|..+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  558 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK  558 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence            3467788889999999999999999 987778889999999886652       47777777776 33456667779999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      |.+|..+|+|++-++++..+++..|++|.+...-..+-.++.+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887666555555544

>KOG2047|consensus

Probab=97.54  E-value=0.0051  Score=52.89  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=126.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-   78 (206)
                      |.++|++.+.|..+-.  +..|+..+-+..|..|+..-+|..  .-...+|...|..|...|+.+.|...|+++.+.+= 
T Consensus       342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~  419 (835)
T KOG2047|consen  342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK  419 (835)
T ss_pred             HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence            6789999999987655  457889999999999998643531  12567899999999999999999999999998763 


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------hHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1039          79 ---DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---------AIQPVLS---RLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        79 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~---~~~~~~~~~~~~~~~~~~~~~  143 (206)
                         +...+|..-|..-....+++.|.+..+++... |..+         ++...+-   .+....-+.++..+. -...+
T Consensus       420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt-festk  497 (835)
T KOG2047|consen  420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT-FESTK  497 (835)
T ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc-HHHHH
Confidence               33678888999999999999999999998764 3221         1111111   111222223332221 12356


Q ss_pred             HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      ..|++.++ .-...++....|..+-+..-++++.+.|-|
T Consensus       498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr  536 (835)
T KOG2047|consen  498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER  536 (835)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            78888888 456777788888888888888888887743

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.53  E-value=0.00019  Score=36.86  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455666666666666666666666655554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.53  E-value=0.0024  Score=42.63  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=72.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHhhhCCCCHHH
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+..++.+||+-+|++..+..+... ++.......+..-|..++.+..           +--+++.|.++..+.|..+..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            4678999999999999999999988 6521122455556776655542           346788888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ++.+|.-+-....|++++.-.++++.+
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888887777777788888888888765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.51  E-value=0.0071  Score=47.75  Aligned_cols=123  Identities=3%  Similarity=-0.145  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      +|..+.....+.+..+.|...|.+|++-.+....+|...|..-+. .++.+.|.+.|+++++..|.+...+.........
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455666666777779999999999997777789999999999777 5666669999999999999999998888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC-CCC---hhhhHHHHhhhhHhcccchhhHHH
Q psy1039         128 VTKRMQENEQLQNKVHNMFKYVFDT-SAP---MDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +++...        +..+|++++.. +.+   ..++....+.-...|+.+...+..
T Consensus        83 ~~d~~~--------aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   83 LNDINN--------ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             TT-HHH--------HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             hCcHHH--------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            665555        77799999993 332   357777777777778666555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0545|consensus

Probab=97.50  E-value=0.0034  Score=47.93  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--------VPDD----------PKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      ....+...|.-+++.|+|.+|...|+.|+..        .|..          ...+.+.+.|+...|+|-++++.+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            5667889999999999999999999998743        4544          345888999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +..+|+|..+...-+..+...=+..+        +..-|.+++.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~e--------A~~D~~~vL~  292 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAE--------AKADLQKVLE  292 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHH--------HHHHHHHHHh
Confidence            99999999998888777665444444        3345666666

>KOG2610|consensus

Probab=97.49  E-value=0.0014  Score=52.13  Aligned_cols=105  Identities=15%  Similarity=0.055  Sum_probs=88.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      |...|.+--++..--..++..|+...-...+++.+-. + |+.|-..-..-..+-++...|-|++|.+..++++++||.+
T Consensus       130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence            4556778888888888999999999999999999887 5 6533345555567888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      ..+...++.++.-.|++.++++...+-
T Consensus       209 ~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  209 CWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            999999999999999999998876543

>KOG1941|consensus

Probab=97.49  E-value=0.0011  Score=53.32  Aligned_cols=126  Identities=13%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC----CCH--
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP----DDP--   81 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p----~~~--   81 (206)
                      .....+|+.+...+.+++++++|+.|++...  .++.....++..+|..+-.+.++++|+-+..+|..+-.    +++  
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            4556688888888899999999999888651  12222344566777777777777777777777665532    222  


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCh----hHHHHHHHHHHHHHHHHHHH
Q psy1039          82 ----KALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTNK----AIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        82 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~~l~~~~~~~~~~~~~~  135 (206)
                          -+.|.++.++..+|..-+|.++++.+.++.  ..|.    .-...++.++...++.+.+-
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence                245566777777777777777777666542  2222    22334555555555544433

>KOG0546|consensus

Probab=97.49  E-value=0.00038  Score=55.42  Aligned_cols=125  Identities=30%  Similarity=0.355  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cC-------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EE-------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~-------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      +...+.|+..++.++|..|..-|.++.+...  |.             .......+.+++.+-++.+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            4455678889999999999999998887542  10             01234457778999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  134 (206)
                      +.++...+++++++..+..+.++++|.+.++.+....|++..+...+........+....
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~  362 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRK  362 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888777666665543

>PRK10941 hypothetical protein; Provisional

Probab=97.47  E-value=0.0016  Score=50.87  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      .+.++=..+.+.++++.|+.+.+..+.+. |+   ++.-+..+|.+|.++|.+..|..+++.-++..|+++.+-.-+..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFD-PE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            45566778899999999999999999999 99   78888999999999999999999999999999999887655443

>KOG4507|consensus

Probab=97.45  E-value=0.002  Score=54.77  Aligned_cols=108  Identities=12%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          11 KLKESGNSAFK-QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        11 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      .+..++..|.+ +|+..+|+.|+..++-.. |.. ....++..+|..+.++|...+|--.+..|+.--|.....++-+|.
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-~~h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~  291 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFS-SRH-NKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN  291 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhC-Ccc-cccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence            45566666665 899999999999999988 641 134567889999999999999999998888888888888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      ++..+|.+.....+|..+.+.+|........
T Consensus       292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q  322 (886)
T KOG4507|consen  292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQ  322 (886)
T ss_pred             HHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence            9999999999999999999999976544333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.44  E-value=0.022  Score=40.83  Aligned_cols=112  Identities=14%  Similarity=0.025  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      -...+.....+....++.+++...+...--+. |+   ....-..-|..+...|+|.+|+..++.+..-.|..+.+.-.+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl   84 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL   84 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence            34567788888899999999999999888888 98   888888999999999999999999999999899999888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +.|+..+|+..= ..+-..+++..+ ++.+......+.
T Consensus        85 A~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   85 ALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALL  120 (160)
T ss_pred             HHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHH
Confidence            999999998621 112233444433 555555544443

>KOG1586|consensus

Probab=97.44  E-value=0.0065  Score=46.09  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhhCC------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVP------   78 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p------   78 (206)
                      +-.-|-.+--.++.++.++|+.++++++++. .+.   .+-+..+..+|..|..- .++++|+.+|+++-+...      
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            3344444444556667888888888888876 431   12333455677777654 678888888887765532      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      .-.+++...|..-..+++|.+|+..|+++....-+|+
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            2235666677777788888888888888777665554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.44  E-value=0.0054  Score=50.26  Aligned_cols=98  Identities=16%  Similarity=0.281  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      +-...|...++.|+|..|..-|.-++++. ..               ......+-..+..||+++++.+-|+....+.+-
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelc-skg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELC-SKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            33445667778888888888888888776 32               123445567799999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        76 l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ++|.....+++.|.|...+.+|.+|.+.+--+.-
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887655443

>KOG1585|consensus

Probab=97.43  E-value=0.0084  Score=45.83  Aligned_cols=133  Identities=13%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hh
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KA  116 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  116 (206)
                      -+..|..-+.+|...++|++|...+.++.+-...|      .+++-..|.....+..+.+++..++++..+.-.+   ..
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            45556666666666666766666666666433222      2344455566666666667777766666543222   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CC----hhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS--AP----MDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      +...+......+++..- .     .+.++|++++. ..  +.    .+..-..++.|....++.+|...+.|+..
T Consensus       110 AAmaleKAak~lenv~P-d-----~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKP-D-----DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV  178 (308)
T ss_pred             HHHHHHHHHHHhhcCCH-H-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence            22333333333222111 1     14455555554 11  11    22233456777777888888888877766

>KOG1941|consensus

Probab=97.42  E-value=0.0083  Score=48.40  Aligned_cols=101  Identities=20%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-----
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-----   77 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----   77 (206)
                      ...-.+|..|-...++++|+-+..+|.++. .+       ..+...+++.++.++..+|+.-.|.++++++.++.     
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            355678999999999999999999998875 32       24456778899999999999999999999998763     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039          78 -PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        78 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  111 (206)
                       |.......-+|.+|...|+.+.|..-|+.++..-
T Consensus       242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence             3346677888999999999999999999988753

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.40  E-value=0.00038  Score=36.83  Aligned_cols=26  Identities=42%  Similarity=0.750  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALK   37 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~   37 (206)
                      +..+|.++...|+|++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555555555555555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.36  E-value=0.00037  Score=36.90  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al  108 (206)
                      +.++|.+|...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG1585|consensus

Probab=97.36  E-value=0.04  Score=42.24  Aligned_cols=127  Identities=16%  Similarity=0.109  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-----CCC
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-----PDD   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----p~~   80 (206)
                      +..+...+..|...++|++|..++.+|++.. .+   .-.-+..+...|...-.+..+.++...|+++..+.     |+-
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            4455666677777889999999999999654 22   11245567777778888899999999999998773     444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ...-..+|--....-+.++|+..|++++.+-..+.      +.....++++.+++...++..
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT  171 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence            44455566666777889999999999988654432      233344555556665555443

>KOG3364|consensus

Probab=97.36  E-value=0.011  Score=41.05  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHhh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLE-IVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV  120 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  120 (206)
                      +....++++-++....+   ..+.+..++..++ -.|+ ..++.|.+|..++++++|+.+.++....++.+|+|+.+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            46778888888877754   6688889998886 5554 46788999999999999999999999999999999998776


Q ss_pred             HHHHHHHHH
Q psy1039         121 LSRLFAIVT  129 (206)
Q Consensus       121 l~~~~~~~~  129 (206)
                      -..+...+.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            665555444

>smart00028 TPR Tetratricopeptide repeats

Probab=97.33  E-value=0.00043  Score=34.47  Aligned_cols=29  Identities=38%  Similarity=0.527  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p   78 (206)
                      +..+|.++..+|++++|+..++++++++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444444444444444444444444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2396|consensus

Probab=97.33  E-value=0.0091  Score=49.91  Aligned_cols=95  Identities=15%  Similarity=0.058  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q psy1039          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKH  106 (206)
Q Consensus        28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~  106 (206)
                      -...|+.|+... +.   +..+|.+...-.-+.+.+.+--..|.+++..+|++++.|..-|.=.+..+. .+.|...+.+
T Consensus        90 Iv~lyr~at~rf-~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   90 IVFLYRRATNRF-NG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHhc-CC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            345688888888 76   688888876665666669999999999999999999999999987777776 9999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHH
Q psy1039         107 IHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus       107 al~~~p~~~~~~~~l~~~~~  126 (206)
                      ++..+|++|.++...-++..
T Consensus       166 gLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             HhhcCCCChHHHHHHHHHHH
Confidence            99999999999888766654

>smart00028 TPR Tetratricopeptide repeats

Probab=97.31  E-value=0.00051  Score=34.19  Aligned_cols=33  Identities=27%  Similarity=0.516  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      .+++.+|.++..+|++++|...+++++..+|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1070|consensus

Probab=97.31  E-value=0.021  Score=53.17  Aligned_cols=162  Identities=13%  Similarity=0.016  Sum_probs=110.9

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----------------------------------HHHHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------------------------HERAT   48 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----------------------------------~~~~~   48 (206)
                      ..+|+.+..|.+.=..++..++.++|.+..++|+..-.+.-                                  -....
T Consensus      1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~ 1531 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT 1531 (1710)
T ss_pred             hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH
Confidence            45677777777777777777888888777777777531210                                  00233


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFA  126 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~  126 (206)
                      .+..|...|.+.+++++|.+.++..++-.-.....|...|..++...+-+.|...+.+|+..-|.  |.......+.+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            45566777777788888888888877776677778888888888888888888888888888776  5666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhccc
Q psy1039         127 IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE  172 (206)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (206)
                      ..++.++        -..+|...+. .|...+.|.-+...-+.++..
T Consensus      1612 k~GDaeR--------GRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1612 KYGDAER--------GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred             hcCCchh--------hHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence            6666555        3336655555 677777776666655555443

>KOG1308|consensus

Probab=97.27  E-value=0.00019  Score=56.94  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  132 (206)
                      -+.-.+..|.++.|++.|..+++++|.....|-.+|.++..++....|+..|..++.++|+...-....+.....++...
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            33444567889999999999999999999999999999999999999999999999999998877777777777777776


Q ss_pred             HHHH
Q psy1039         133 QENE  136 (206)
Q Consensus       133 ~~~~  136 (206)
                      .+..
T Consensus       200 ~aa~  203 (377)
T KOG1308|consen  200 EAAH  203 (377)
T ss_pred             HHHH
Confidence            6554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.20  E-value=0.00068  Score=51.10  Aligned_cols=58  Identities=26%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039          19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ....|+.+.|.+.|.+++.+. |+   -...|+.+|....+.|+++.|...|++.++++|++
T Consensus         5 ~~~~~D~~aaaely~qal~la-p~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELA-PE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcC-ch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555555556666666655 55   55555666666556666666666666666665544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.20  E-value=0.042  Score=44.92  Aligned_cols=167  Identities=11%  Similarity=0.040  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHH---ccCHHHHHHHHHH-HhhhCCCCHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLK---QNQNDKVIEDCSK-SLEIVPDDPK   82 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~l~p~~~~   82 (206)
                      +....++=..|....+|+.-+...+..-.+  |+.  .....+.+..|-++.+   .|+.++|+..+.. .....+.+++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~--p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL--PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc--CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            344555556778888999988888876665  211  1156677888999988   8999999999999 4566678899


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Q psy1039          83 ALFRRCQAYEAI---------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH----NMFKYV  149 (206)
Q Consensus        83 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  149 (206)
                      .+..+|.+|..+         ...++|+..|.++.+++|+. ....++..+....+.......+..+ +.    .+..+-
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~-i~~~l~~llg~k  296 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRK-IGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHH-HHHHHHHHHHhh
Confidence            999999988664         34788999999999999754 3333333443333332221111111 21    111111


Q ss_pred             cCCCCChhhhH--HHHhhhhHhcccchhhHHH
Q psy1039         150 FDTSAPMDKRV--TAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       150 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~  179 (206)
                      -..+....+|.  ..+++.+-.|+.++|...+
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~  328 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAA  328 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            11234455553  3566666667775554444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.15  E-value=0.1  Score=42.73  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY--LKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      +-.....+...+-.|+|++|.+-|+..+. + |+    ...+-.+|..+  ...|..+-|+.+..++-..-|..+.++..
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d-PE----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A  193 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-D-PE----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA  193 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-C-hH----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence            34556677888889999999999998776 5 75    44444444443  56799999999999999999999999998


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA--IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      .=...+..|+|+.|++..+......--.+.......-+..  +-...-....   ..+...-..+.. .|+-...-...+
T Consensus       194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp---~~Ar~~A~~a~KL~pdlvPaav~AA  270 (531)
T COG3898         194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP---ASARDDALEANKLAPDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhcCCccchHHHHHH
Confidence            8889999999999999987665532212212111111111  1111111110   012233333333 466667778888


Q ss_pred             hhhhHhcccchhhHHH
Q psy1039         164 NNLVVLAREMSGAEML  179 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~  179 (206)
                      ..|+..|+..++...+
T Consensus       271 ralf~d~~~rKg~~il  286 (531)
T COG3898         271 RALFRDGNLRKGSKIL  286 (531)
T ss_pred             HHHHhccchhhhhhHH
Confidence            8888888876665555

>KOG3824|consensus

Probab=97.15  E-value=0.0022  Score=50.50  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      .-...+.-..+.|+.++|...|+.|+.+. |+   ++.++...|......++.-+|-.+|-+|+.+.|.+.+++.+++..
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlala-P~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALA-PT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcC-CC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            33455566778999999999999999999 99   999999999999888999999999999999999999998887654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.08  E-value=0.097  Score=42.23  Aligned_cols=127  Identities=12%  Similarity=0.116  Sum_probs=99.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CCC--
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPD--   79 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~--   79 (206)
                      ....+..|...+....+.|+++.|...+.++.... +.. ...+.+.+..+..++..|+..+|+..++..+..  ...  
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~  220 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID  220 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence            44667889999999999999999999999998865 321 114567788999999999999999999888771  110  


Q ss_pred             ------------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          80 ------------------------------DPKALFRRCQAYEAI------GKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        80 ------------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                                                    ..++++.+|.-....      ++++++...|..+..++|+...++...+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                          134566677666666      88899999999999999999888888887


Q ss_pred             HHHHHHHHH
Q psy1039         124 LFAIVTKRM  132 (206)
Q Consensus       124 ~~~~~~~~~  132 (206)
                      ....+-...
T Consensus       301 ~~~~~~~~~  309 (352)
T PF02259_consen  301 FNDKLLESD  309 (352)
T ss_pred             HHHHHHHhh
Confidence            776654433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0096  Score=46.17  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      .-.....++=..+...++++.|.....+.+.++|.++.-+.-.|.+|.++|.+..|.+.++..++..|+.+.+...-..+
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34556667777888999999999999999999999999999999999999999999999999999999998876555444


Q ss_pred             H
Q psy1039         125 F  125 (206)
Q Consensus       125 ~  125 (206)
                      .
T Consensus       259 ~  259 (269)
T COG2912         259 L  259 (269)
T ss_pred             H
Confidence            3

>KOG4814|consensus

Probab=97.03  E-value=0.014  Score=50.21  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..+++.+..+|+..+|..++++|...+.-. |+.   ...+....+++.||..+.+.+.|.+++.+|-+.+|.++-.-+.
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            467788899999999999999999999987 652   2347788899999999999999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      .-.+....|.-++|..+..+....
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhh
Confidence            888888899999999888776654

>KOG2471|consensus

Probab=97.02  E-value=0.0008  Score=55.91  Aligned_cols=86  Identities=15%  Similarity=0.228  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccc-------cC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALK-VTA-------EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~-------p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ....|.++|.+++..|.|..++.+|.+|++ .+.       |.      ...+..+.++.|..|...|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            456788999999999999999999999996 110       21      1225778999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHH
Q psy1039          74 LEIVPDDPKALFRRCQAYEA   93 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~   93 (206)
                      ....-.+|..|.++|.|-+.
T Consensus       362 v~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999988654

>KOG2047|consensus

Probab=97.00  E-value=0.2  Score=43.51  Aligned_cols=67  Identities=16%  Similarity=0.118  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      ...|...|..|-..|+.+.|-..|++++...-+.-...+..|..-|..-+...+++.|+...++|..
T Consensus       387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            3455666666666666666666666666653222111344455555555555555555555555443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.87  E-value=0.046  Score=41.38  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHhhhCCC------CHH
Q psy1039          19 AFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQ-------NDKVIEDCSKSLEIVPD------DPK   82 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~---p~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~l~p~------~~~   82 (206)
                      +-....+++|++.|.-|+-...   +.....+.++..+|=+|..+|+       +..|...|.++++....      ...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            3345678899998888877532   2222357778888888888888       45677777777654322      256


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      ..|.+|.+..++|++++|.+.|.+++.....+
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            78899999999999999999999999864443

>KOG3617|consensus

Probab=96.85  E-value=0.051  Score=48.46  Aligned_cols=179  Identities=13%  Similarity=0.074  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------cccC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKV----------TAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~~p~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      ..+++.+..+-..++.+.|+++|+++-..          + |.       ......+|.--|..+...|+.+.|+..|..
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~-p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY-PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC-hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            45778888888889999999998875321          1 21       122455677788888899998888888877


Q ss_pred             Hhhh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHH
Q psy1039          73 SLEI---------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLF  125 (206)
Q Consensus        73 al~l---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~  125 (206)
                      |-.-                     ...+..+.|.+|+.|...|++.+|+..|.++-.+.      .+| +....+..+.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            6322                     23456789999999999999999999988765432      222 2223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch---HHHHHHHhcccCChhhhh
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV---AKQINTLLKCETNEEIYL  202 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~  202 (206)
                      ..-+..+...      +..+|+..      .-........|...|-+.+|++.-|...+   .+-|-+=++-++||.+..
T Consensus      1017 l~s~~~d~v~------aArYyEe~------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1017 LMSGGSDLVS------AARYYEEL------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred             hhcCchhHHH------HHHHHHHc------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence            2222222211      22343332      22344555667777888888888887666   566666666677777653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.82  E-value=0.0027  Score=47.97  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=55.9

Q ss_pred             HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      .....++.+.|.+.|++++.+-|++...|+++|......|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            445678999999999999999999999999999999999999999999999999999763

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.79  E-value=0.031  Score=36.17  Aligned_cols=49  Identities=10%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus        28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      .+.-+++.+..+ |+   +....+.+|..+...|++++|++.+-.+++.++++
T Consensus         7 ~~~al~~~~a~~-P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAAN-PD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHS-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            355678888889 98   89999999999999999999999999999988876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.78  E-value=0.03  Score=34.98  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      .+......|.-++..++.++|+..|.++++.. ++++....++-.+..+|...|+|.+.+.+..+=+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678888999999999999999999988 7755566666777788899999999888775544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4151|consensus

Probab=96.75  E-value=0.013  Score=51.39  Aligned_cols=121  Identities=31%  Similarity=0.507  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQ--NQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .+......|+.++..+++..|.--|..++.+- |. +...+....+.+.|+..+  |+|..++..++-++...|....++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            34566788999999999999988888888888 73 233566777888888766  589999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      +.++.+|..++.++-|++...-....+|.+.++.....+++..+.
T Consensus       131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~  175 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE  175 (748)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence            999999999999999999988888899999888877766665553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.74  E-value=0.12  Score=37.02  Aligned_cols=88  Identities=11%  Similarity=0.037  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      ...+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|+|.+|...++.+..-.|..+.....++.+..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            44556666666788899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q psy1039         127 IVTKRMQE  134 (206)
Q Consensus       127 ~~~~~~~~  134 (206)
                      .+++....
T Consensus        90 ~~~D~~Wr   97 (160)
T PF09613_consen   90 ALGDPSWR   97 (160)
T ss_pred             HcCChHHH
Confidence            88776653

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.71  E-value=0.0052  Score=48.52  Aligned_cols=81  Identities=12%  Similarity=-0.002  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR-RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      ++..|...+....+.|.|.+--..|.++++.+|.|.+.|.. .+.-+...++++.+...+.+++..+|++|.++...-++
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            67888888888888889999999999999999999999887 56778889999999999999999999999998876655


Q ss_pred             HH
Q psy1039         125 FA  126 (206)
Q Consensus       125 ~~  126 (206)
                      ..
T Consensus       186 El  187 (435)
T COG5191         186 EL  187 (435)
T ss_pred             HH
Confidence            43

>KOG1550|consensus

Probab=96.63  E-value=0.069  Score=46.35  Aligned_cols=165  Identities=13%  Similarity=0.106  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHhh
Q psy1039           7 NDYNKLKESGNSAFKQ-----GDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQN-----QNDKVIEDCSKSLE   75 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~   75 (206)
                      .+..+.+.+|..++.-     +|.+.|+.+|..+....+.. ....+.+.+.+|.+|....     ++..|..+|.++-.
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            4566677777777754     68889999999887710000 0003446778888887743     67789999988877


Q ss_pred             hCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          76 IVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        76 l~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      +.  ++.+.+.+|.++..-.   ++..|.++|..|..  -.+..+...++.++..-.....    ....+..+|+++.+ 
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r----~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVER----NLELAFAYYKKAAEK  393 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCC----CHHHHHHHHHHHHHc
Confidence            65  4557888888887766   57789999987765  4677788888888754311111    11236678888887 


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ..............+.. ++.+.+.-.++
T Consensus       394 g~~~A~~~~~~~~~~g~-~~~~~~~~~~~  421 (552)
T KOG1550|consen  394 GNPSAAYLLGAFYEYGV-GRYDTALALYL  421 (552)
T ss_pred             cChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence            33333444444444444 66655554444

>KOG3364|consensus

Probab=96.62  E-value=0.045  Score=38.02  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           9 YNKLKESGNSAFKQGD---YETALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .+..+++++.+.+..+   ..+.+.+++..++ -. |+.  .-.+.+.++..+++.++|++++.+++..++..|+|..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~-~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH-PER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC-ccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4567788888887665   4568889999987 33 432  566788899999999999999999999999999998764


Q ss_pred             H
Q psy1039          85 F   85 (206)
Q Consensus        85 ~   85 (206)
                      -
T Consensus       109 ~  109 (149)
T KOG3364|consen  109 E  109 (149)
T ss_pred             H
Confidence            4

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.57  E-value=0.19  Score=37.21  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DP--KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      ......++..+...|++++|+..++.++....| +.  -+-.++|.++..+|.+++|.+.+...-. +.-.+......|.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGD  167 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhh
Confidence            334566888899999999999999998854333 33  3567889999999999999988765422 1112344566778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039         124 LFAIVTKRMQENEQLQNKVHNMFKYVFDT  152 (206)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ++...++...        +..-|++++..
T Consensus       168 ill~kg~k~~--------Ar~ay~kAl~~  188 (207)
T COG2976         168 ILLAKGDKQE--------ARAAYEKALES  188 (207)
T ss_pred             HHHHcCchHH--------HHHHHHHHHHc
Confidence            8888787777        44577777763

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.57  E-value=0.12  Score=40.68  Aligned_cols=109  Identities=21%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHHcc-------CHHHHHHHHHHH
Q psy1039           6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQN-------QNDKVIEDCSKS   73 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a   73 (206)
                      ..++.+.+.+|..+..    ..++.+|..+|.++.+.. ..   . ......+|.+|..-.       ....|...|.++
T Consensus       106 ~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-~~---~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-NV---EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-Ch---hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            3456788889999888    459999999999999987 22   1 233777888886641       234799999988


Q ss_pred             hhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039          74 LEIVPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~  122 (206)
                      ....  ++.+.+.+|.+|..    ..++.+|...|.++-+...  ......++
T Consensus       182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            8776  78899999988755    3488999999999988766  66666666

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.53  E-value=0.082  Score=42.64  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cc-c----------------------------CcHHHHHHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV-TA-E----------------------------ESHERATCLKNRAAVY   57 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~-p----------------------------~~~~~~~~~~~la~~~   57 (206)
                      .+......+..+...|+..+|+..++..+.. .. +                            .....+.++..+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            6778889999999999999999999888881 10 0                            0123455666777766


Q ss_pred             HHc------cCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q psy1039          58 LKQ------NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF-----------------EEAYTDAKHIHRVEPT  113 (206)
Q Consensus        58 ~~~------~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~al~~~p~  113 (206)
                      ...      +.+++++..|.+++.++|...++|+..|..+...-+.                 ..|+..|-+++...++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666      7889999999999999999999999998776655322                 3377777777777776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.39  E-value=0.0099  Score=31.93  Aligned_cols=29  Identities=31%  Similarity=0.438  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      .++.++|.+|..+|++++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34555555555555555555555555543

>KOG3617|consensus

Probab=96.35  E-value=0.32  Score=43.67  Aligned_cols=168  Identities=15%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------------cHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIED   69 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~   69 (206)
                      +...|.-.|..+-..|+.+.|+.+|..|-+.. .-                  ...+--+.+.+|..|...|++.+|+..
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f-s~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYF-SMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhhhh-hheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34566677888888999999999998887644 21                  011344677899999999999999999


Q ss_pred             HHHHhhh------CCCC--HHHHH------------HHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          70 CSKSLEI------VPDD--PKALF------------RRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        70 ~~~al~l------~p~~--~~~~~------------~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      |.+|-..      .-.|  -+-+-            .-|.-|...| +++.|+..|.++=       .+...+.....  
T Consensus       990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG-------m~~kALelAF~-- 1060 (1416)
T KOG3617|consen  990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG-------MIGKALELAFR-- 1060 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc-------chHHHHHHHHh--
Confidence            9886543      2211  11111            2233344444 4455555544431       11111111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                         .+     +-.+.++..+-+++..|.....+.+..+....+|++|.+-+..-..+....++-.
T Consensus      1061 ---tq-----Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1061 ---TQ-----QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred             ---hc-----ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               11     1114556666677778888889999999999999998888877776666665543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.32  E-value=0.48  Score=38.93  Aligned_cols=132  Identities=13%  Similarity=0.129  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCChh
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEA---IGKFEEAYTDAKH-IHRVEPTNKA  116 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~  116 (206)
                      .++....++=.+|....+|+.-+...+..-.+    -++.+...+..|.++.+   .|+.++|...+.. ...-.+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            35667778888899999999999999887766    45677888899999999   9999999999999 4455667899


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhh
Q psy1039         117 IQPVLSRLFAIVTKRM-QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGA  176 (206)
Q Consensus       117 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  176 (206)
                      +...+|+++..+-... ....+.-.++..+|+++.....+.-.....+..+...|......
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence            9999999987654331 11222344577899999996677777788888887777654333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.31  E-value=0.12  Score=36.56  Aligned_cols=77  Identities=10%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g   95 (206)
                      .......++.+++...+...--+. |+   ....-..-|..+...|+|.+|+..++....-.+..+-+.-.++.|+..+|
T Consensus        17 ~~~aL~~~d~~D~e~lLdALrvLr-P~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDALRVLR-PN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhC-CC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            333334444444444444444444 44   44444444444455555555555555544444444444444444444444


Q ss_pred             C
Q psy1039          96 K   96 (206)
Q Consensus        96 ~   96 (206)
                      +
T Consensus        93 D   93 (153)
T TIGR02561        93 D   93 (153)
T ss_pred             C
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.30  E-value=0.39  Score=39.41  Aligned_cols=130  Identities=15%  Similarity=0.046  Sum_probs=90.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------------cC------------cHHHHHHHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------------EE------------SHERATCLKNRAAV   56 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------p~------------~~~~~~~~~~la~~   56 (206)
                      |..+|-+..++.+++.++...|+++.|-+..++|+-..+             +.            ......+.+.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            456899999999999999999999999999999875431             00            01223346666777


Q ss_pred             HHHccCHHHHHHHHHHHhhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHHH
Q psy1039          57 YLKQNQNDKVIEDCSKSLEIVPD-DPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP-T----NKAIQPVLSRLFAIVT  129 (206)
Q Consensus        57 ~~~~~~~~~A~~~~~~al~l~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~~l~~~~~~~~  129 (206)
                      +.+.|-+.-|.++++-.+.++|. ++- +.+.+-....+.++|+--+..++....... +    -|......+.++..++
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~  192 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE  192 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence            88999999999999999999998 654 444555556667777766666665444211 1    2345555555555555


Q ss_pred             HH
Q psy1039         130 KR  131 (206)
Q Consensus       130 ~~  131 (206)
                      +.
T Consensus       193 ~~  194 (360)
T PF04910_consen  193 KE  194 (360)
T ss_pred             Cc
Confidence            54

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1586|consensus

Probab=96.29  E-value=0.34  Score=37.05  Aligned_cols=106  Identities=20%  Similarity=0.221  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----   80 (206)
                      +.++.+...|+.|-...+|+.|=..|.++-++.-  .+....+..|..-+.|| +.++..+|+..+++++++..+-    
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~  110 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT  110 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence            3455666667777778888888888888776531  12223566677777777 5569999999999999987654    


Q ss_pred             --HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q psy1039          81 --PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        81 --~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~  113 (206)
                        .+-+..+|.+|..- .+++.|+.+|+++-+....
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence              23455788888776 8999999999998876544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.28  E-value=0.012  Score=31.53  Aligned_cols=31  Identities=32%  Similarity=0.479  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVT   39 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   39 (206)
                      +..+.++|..+...|++++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999999875

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.27  E-value=0.41  Score=37.72  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q psy1039          10 NKLKESGNSAFKQG-DYETALDFYTKALKV   38 (206)
Q Consensus        10 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~   38 (206)
                      ..+|+.|...+..+ ++++|+.+++++.++
T Consensus        36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen   36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            33444444444444 444444444444444

It is also involved in sporulation [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.14  Score=43.91  Aligned_cols=106  Identities=17%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HhhhCCCCHHHHHHH------
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK-SLEIVPDDPKALFRR------   87 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~l~p~~~~~~~~l------   87 (206)
                      +...+...+....+......++..+ |+   +..+..++|.+....|....+...+.. +....|++......+      
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~-~~---~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVN-PE---NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL  148 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcC-cc---cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence            4666777888888888899999999 88   899999999998888876666666655 889999988776666      


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      |.....+|+-.++....+++..+.|.++.+...+...
T Consensus       149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            8888888999999999999999999997666655444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.17  E-value=0.3  Score=40.85  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccCc-------------------------------------------H
Q psy1039           9 YNKLKESGNSAFKQGD-YETALDFYTKALKVTAEES-------------------------------------------H   44 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~p~~-------------------------------------------~   44 (206)
                      ...+..-+.-+.+.|+ -++|+..++.++... |..                                           .
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i  457 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI  457 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence            4455566777777777 667888888777766 541                                           0


Q ss_pred             HHHHH--HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          45 ERATC--LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        45 ~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      .+..+  ...=|..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++...
T Consensus       458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            11222  22345567889999999999999999999 9999999999999999999999988654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.16  E-value=0.14  Score=38.77  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhccc-cC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039           7 NDYNKLKESGNSAFKQGD-------YETALDFYTKALKVTA-EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~~-p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      .-+..+..+|..|...|+       +..|+..|.++.+... |. ......+.+.+|....+.|++++|..+|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            346677888888888888       4456666666666541 11 22356788999999999999999999999999765


Q ss_pred             CCCH-HHHHHHHHH
Q psy1039          78 PDDP-KALFRRCQA   90 (206)
Q Consensus        78 p~~~-~~~~~la~~   90 (206)
                      -.+. ..+..+|.-
T Consensus       196 ~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  196 KASKEPKLKDMARD  209 (214)
T ss_pred             CCCCcHHHHHHHHH
Confidence            4333 344555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.14  E-value=0.19  Score=41.21  Aligned_cols=136  Identities=13%  Similarity=0.178  Sum_probs=96.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH---HHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS---KSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---~al~l~p   78 (206)
                      +++.|+..-+-..-+..++..|+..++-.+++.+.+.. |+    +.    ++..|....--+-++.-++   +.-.+.|
T Consensus       256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e-PH----P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~  326 (531)
T COG3898         256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE-PH----PD----IALLYVRARSGDTALDRLKRAKKLESLKP  326 (531)
T ss_pred             hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC-CC----hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence            45667777777778899999999999999999999999 86    33    3334444333333444443   4457789


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFDTSAP  155 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      +|....+..+.+-+.-|+|..|...-+.+....|... +...+..+...- ++..+        +.++..++...|.+
T Consensus       327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~--------vR~wlAqav~APrd  395 (531)
T COG3898         327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGK--------VRQWLAQAVKAPRD  395 (531)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHH--------HHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999888754 334444444322 33333        66777777764444

>KOG0530|consensus

Probab=96.07  E-value=0.083  Score=40.95  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHH-
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE-   98 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~-   98 (206)
                      +...-..|+..-..+|+++ |.   +...|..+-.++..++ +..+-++++.+.++-+|.|..+|..+-.+...+|+.. 
T Consensus        55 ~~E~S~RAl~LT~d~i~lN-pA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLN-PA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             ccccCHHHHHHHHHHHHhC-cc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            3334445555555555555 54   4444444444443333 3444444445555555555555444444444444443 


Q ss_pred             HHHHHHHHHHhcCCCChhHH
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~  118 (206)
                      .-....+.++..+..|--++
T Consensus       131 rELef~~~~l~~DaKNYHaW  150 (318)
T KOG0530|consen  131 RELEFTKLMLDDDAKNYHAW  150 (318)
T ss_pred             chHHHHHHHHhccccchhhh
Confidence            33444444444444443333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.96  E-value=0.04  Score=43.04  Aligned_cols=62  Identities=13%  Similarity=0.044  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      |..+|.+|+.+.|++..+|+.+|.+....|+.=+|+-+|-|++...-..+.+..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555554433334444444444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.86  E-value=0.058  Score=35.10  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=27.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhccccCc---H---HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039          19 AFKQGDYETALDFYTKALKVTAEES---H---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p~~---~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      .++.|+|..|++.+.+..+.. ...   .   ....+..++|..+...|++++|+..+++++.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~-~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYA-KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            445666666666655555543 210   0   11233444555555555555555555555443

>KOG1550|consensus

Probab=95.80  E-value=0.2  Score=43.51  Aligned_cols=94  Identities=21%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCCCCH
Q psy1039          10 NKLKESGNSAFKQG-----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus        10 ~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~   81 (206)
                      .+.+.+|..|.+..     ++..|+.+|.++.+++      ++.+.+.+|.++..-.   ++..|.++|..|...  .+.
T Consensus       289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~  360 (552)
T KOG1550|consen  289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI  360 (552)
T ss_pred             ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence            35677888888854     7788999999999987      4677888999997766   578999999988754  467


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcC
Q psy1039          82 KALFRRCQAYEAI----GKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        82 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~  111 (206)
                      .+.+++|.||..=    -+...|...++++-+.+
T Consensus       361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8999999887653    47788999999998877

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.089  Score=40.92  Aligned_cols=74  Identities=26%  Similarity=0.360  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..++=..+...++++.|+.+-++.+.++ |+   ++.-+.-+|.+|.++|.++.|+++++..++..|+.+.+-.-++.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~-P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLN-PE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhC-CC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            3444567788999999999999999999 98   78788899999999999999999999999999999887555443

>KOG1914|consensus

Probab=95.72  E-value=1.2  Score=38.27  Aligned_cols=143  Identities=16%  Similarity=0.084  Sum_probs=99.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--hCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--IVPD   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~   79 (206)
                      ++.+|.+..+|+.+-..+-.+ .+++....|++.+... |.   ++.+|..-....+..++|+.-...|.+++.  ++-+
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~---s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD   87 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PS---SPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD   87 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh
Confidence            568999999999999888777 9999999999999999 99   899999988888999999999999999884  3433


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHH----HHHHHH---hcCCCChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYT----DAKHIH---RVEPTNKAIQPVLSRLFAIVT---KRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~----~~~~al---~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  149 (206)
                      .+..|.  ..+-.-.|+...+..    .|+-++   ..++.+.+++.....-.....   ..++.  +.-..+...|+++
T Consensus        88 LW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~--QRI~~vRriYqra  163 (656)
T KOG1914|consen   88 LWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN--QRITAVRRIYQRA  163 (656)
T ss_pred             HHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH--HHHHHHHHHHHHH
Confidence            344333  333334444333222    233222   256777777777665554322   22221  1223578999999


Q ss_pred             cCCC
Q psy1039         150 FDTS  153 (206)
Q Consensus       150 ~~~~  153 (206)
                      +..|
T Consensus       164 l~tP  167 (656)
T KOG1914|consen  164 LVTP  167 (656)
T ss_pred             hcCc
Confidence            9955

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.62  E-value=0.53  Score=37.97  Aligned_cols=105  Identities=15%  Similarity=0.003  Sum_probs=77.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGD------------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED   69 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~   69 (206)
                      ++.+|++.+.|..+...--..-.            .+.-+.+|++|++.+ |+   +..++..+=.+..+...-++...-
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~---~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PD---SERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46789999999888755443322            456678899999999 98   777777777777788888888999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhc
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAY---EAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~  110 (206)
                      .++++..+|.+...|...-...   ...-.+......|.+++..
T Consensus        88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            9999999999877665443222   2233577888888877764

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.45  E-value=1.2  Score=36.60  Aligned_cols=80  Identities=19%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC------------------------HHHHHHHHHHHHHcC
Q psy1039          45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD------------------------PKALFRRCQAYEAIG   95 (206)
Q Consensus        45 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~------------------------~~~~~~la~~~~~~g   95 (206)
                      .+...+..++.++..+|+++.|.+..++|+-.     .|.+                        ..+.++....+.+.|
T Consensus        38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG  117 (360)
T PF04910_consen   38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG  117 (360)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence            38999999999999999999999999998622     1111                        235777788999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-ChhHHHHHHHH
Q psy1039          96 KFEEAYTDAKHIHRVEPT-NKAIQPVLSRL  124 (206)
Q Consensus        96 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~  124 (206)
                      .+.-|.+.++-.+.+||. ||-....+-..
T Consensus       118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~  147 (360)
T PF04910_consen  118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDY  147 (360)
T ss_pred             cHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence            999999999999999999 55443333333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.37  E-value=0.59  Score=36.83  Aligned_cols=65  Identities=23%  Similarity=0.316  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ...++..++..+...|+++.+++.+++.+.++|-+...|..+-.+|...|+...|+..|++.-..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            56678888999999999999999999999999999999999999999999999999998877654

>KOG2300|consensus

Probab=95.37  E-value=1.1  Score=37.85  Aligned_cols=124  Identities=18%  Similarity=0.154  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------   80 (206)
                      ..+.....+|.....-|.|+.|...|..|++.. ......+.+-.++|..|...|+-+.-.+..+   .+.|.|      
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ss  440 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSS  440 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchH
Confidence            356788889999999999999999999999987 6655567778889999999777555433333   345553      


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHHHHHH
Q psy1039          81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-------AIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        81 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~  135 (206)
                          ..++|..|.-.+..+++.||...+.+.++.. +..       -....++.+...+++..+..
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~  505 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESR  505 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                3467888999999999999999999998865 222       22344566666666655533

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.36  E-value=0.026  Score=44.70  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=69.2

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHH-HHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN-RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      -|+++..|...+....+.|-|.+--..|.+++... |.   +.++|.. -+.-++..++++.+...|.++++++|+++..
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~---nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i  178 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PL---NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI  178 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence            46788899999999999999999999999999999 99   8999987 5567788899999999999999999999876


Q ss_pred             HHH
Q psy1039          84 LFR   86 (206)
Q Consensus        84 ~~~   86 (206)
                      |+.
T Consensus       179 w~e  181 (435)
T COG5191         179 WIE  181 (435)
T ss_pred             HHH
Confidence            553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.30  E-value=1.1  Score=35.30  Aligned_cols=26  Identities=12%  Similarity=0.222  Sum_probs=12.4

Q ss_pred             HHHHHHHHHcc-CHHHHHHHHHHHhhh
Q psy1039          51 KNRAAVYLKQN-QNDKVIEDCSKSLEI   76 (206)
Q Consensus        51 ~~la~~~~~~~-~~~~A~~~~~~al~l   76 (206)
                      ++.|......+ ++++|..+++++..+
T Consensus        39 yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen   39 YNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            34444444444 555555555554444

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.29  E-value=0.13  Score=33.48  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=46.4

Q ss_pred             HHHHccCHHHHHHHHHHHhhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          56 VYLKQNQNDKVIEDCSKSLEIVPD---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        56 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      ..++.|+|..|++.+.+.+.....         ...+..++|.++...|++++|...++.++.+-..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345789999998888887755321         2457788999999999999999999999987543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.28  E-value=0.65  Score=32.93  Aligned_cols=86  Identities=9%  Similarity=-0.064  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      +......-...+++.++...+...--+.|..+..-..-|.++...|+|.+|...++...+-.+..+.....+..+...++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444558999999999999889999999999999999999999999999999998888888888888888888888


Q ss_pred             HHHHHH
Q psy1039         130 KRMQEN  135 (206)
Q Consensus       130 ~~~~~~  135 (206)
                      +.....
T Consensus        93 Dp~Wr~   98 (153)
T TIGR02561        93 DAEWHV   98 (153)
T ss_pred             ChHHHH
Confidence            776644

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.23  E-value=0.086  Score=27.75  Aligned_cols=18  Identities=17%  Similarity=0.200  Sum_probs=7.0

Q ss_pred             HHHHHHHHccCHHHHHHH
Q psy1039          52 NRAAVYLKQNQNDKVIED   69 (206)
Q Consensus        52 ~la~~~~~~~~~~~A~~~   69 (206)
                      .+|..+..+|++++|+..
T Consensus         6 ~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            334444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.21  E-value=0.04  Score=29.41  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      +++..+|.+-...++|++|+..|++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46677888888888888888888887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.18  E-value=0.046  Score=45.90  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      .-.|.++......+.++-..|.|+.+.....-+-..- ..   ......-+-...+.+|++++|.....-.+.-.-++++
T Consensus       317 r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s---~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~e  392 (831)
T PRK15180        317 RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GT---TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEE  392 (831)
T ss_pred             HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cC---CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChh
Confidence            3456666667777788888888888877655443332 22   2233444555667888888888888887776667777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      ...--|.....+|-++++.-++++.+.++|..
T Consensus       393 i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        393 VLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             heeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            76666777778888999999999999988754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.15  E-value=0.3  Score=33.31  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA------EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~------p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      ++--+..++..+...|+|++++..-.+++....      .+ .+.=..+.+++|.++...|+.++|+..|+.+-++
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            345566778889999999998887777666441      22 2233456788999999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.07  E-value=1.1  Score=36.23  Aligned_cols=91  Identities=8%  Similarity=0.031  Sum_probs=73.2

Q ss_pred             HHHHHHHhccccCcHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~   97 (206)
                      ..|++.++-+ |+   +..+|..+....-..-.            .+.-+..+++|++.+|++...+..+=.+.....+-
T Consensus         6 ~el~~~v~~~-P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVREN-PH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHHhC-cc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            3477788888 88   78888877765544422            56778899999999999999888888888888899


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      ++..+-+++++..+|++..++...-..
T Consensus        82 ~~l~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999999988777665443

>KOG2300|consensus

Probab=95.00  E-value=1.5  Score=37.16  Aligned_cols=115  Identities=10%  Similarity=-0.046  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HHccCHHHHHHHHHHHhhhC---CCCH
Q psy1039           8 DYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIV---PDDP   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~l~---p~~~   81 (206)
                      -+.++..++..+...|  +...+|.+.+...... |.....+.....+|..+ ....+++.|...++++..+-   |.+.
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~-is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy   84 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQ-ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY   84 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence            3566777788888888  7888999999988887 66555566677777654 55678999999999987553   4443


Q ss_pred             ----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy1039          82 ----KALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus        82 ----~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~  123 (206)
                          .++-.++.+|.... .+..|...+++++++..+.|.....+-.
T Consensus        85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf  131 (629)
T KOG2300|consen   85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF  131 (629)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH
Confidence                34556788888887 8889999999999998888866555433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.97  E-value=0.38  Score=40.26  Aligned_cols=59  Identities=10%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      ..-+..-|..++..|+|.++.-+-.-..++. |+    +.++..+|.|++...+|.+|-.++..
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia-PS----~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA-PS----PQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3345566788999999999999999999999 95    89999999999999999999999865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041|consensus

Probab=94.97  E-value=1.9  Score=38.33  Aligned_cols=82  Identities=12%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ..++.+.|..+.....|++|.++|...-..            .+...|++....|.+    ++.....-|++.+.+-.+|
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a  859 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMA  859 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHH
Confidence            445556666666666666665555553211            134444444444444    2222333455555555666


Q ss_pred             HHHHHcCCHHHHHHHHHH
Q psy1039          89 QAYEAIGKFEEAYTDAKH  106 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~  106 (206)
                      ..+...|--++|++.|.+
T Consensus       860 ~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  860 DMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHhhchHHHHHHHHHh
Confidence            666666666666666544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.87  E-value=1.5  Score=34.54  Aligned_cols=146  Identities=16%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCC-
Q psy1039          10 NKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDD-   80 (206)
Q Consensus        10 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~-   80 (206)
                      .....+|..+..    ..++.+|+.+|..+.+..      .+...+.+|..|..    ..++.+|..+|+++....-.. 
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a  147 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA  147 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence            355556655554    346888999999777765      57788889999877    448999999999998875444 


Q ss_pred             HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039          81 PKALFRRCQAYEAIG-------KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV-TKRMQENEQLQNKVHNMFKYVFDT  152 (206)
Q Consensus        81 ~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ..+.+.+|.++..-.       +...|...|.++-...  ++.+...++.++..- +-...     ...+..+|+++...
T Consensus       148 ~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d-----~~~A~~wy~~Aa~~  220 (292)
T COG0790         148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD-----LKKAFRWYKKAAEQ  220 (292)
T ss_pred             HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC-----HHHHHHHHHHHHHC
Confidence            455888888877642       2336888888877765  777888888776432 11111     11266688888883


Q ss_pred             CCChhhhHHHHhhhhHhc
Q psy1039         153 SAPMDKRVTAVNNLVVLA  170 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (206)
                      .. .......+ ++...|
T Consensus       221 g~-~~a~~~~~-~~~~~g  236 (292)
T COG0790         221 GD-GAACYNLG-LMYLNG  236 (292)
T ss_pred             CC-HHHHHHHH-HHHhcC
Confidence            33 55566666 666555

>KOG0686|consensus

Probab=94.87  E-value=0.34  Score=39.85  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------CCH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------DDP   81 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--------~~~   81 (206)
                      .++..+|..|...|+.+.|+++|.++-+.+ .+.......+.++-.+-..+|+|..-..+-.+|..-..        -.+
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            356788999999999999999999988877 55445677788888888889999988888887765421        123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ......|.+...+++|..|.++|-.+..
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3455667888888899999999865543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.82  E-value=0.13  Score=27.10  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAK--HIHRVEPTN  114 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~  114 (206)
                      ++.++.+|..+...|++++|+..++  -+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3568889999999999999999944  777777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.71  E-value=0.13  Score=38.27  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----CHHHHHHHHHHHHHcCCH
Q psy1039          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~la~~~~~~g~~   97 (206)
                      +-.-++|...|-++=....=+   ++.+.+.+|..|. ..+..+++..+.+++++.+.    |++.+..++.++..+|++
T Consensus       119 r~~d~~A~~~fL~~E~~~~l~---t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEGTPELE---TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             ccCcHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            334467777776643322113   6888888888775 78899999999999988653    588999999999999999


Q ss_pred             HHHH
Q psy1039          98 EEAY  101 (206)
Q Consensus        98 ~~A~  101 (206)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9884

>KOG4814|consensus

Probab=94.62  E-value=0.85  Score=39.84  Aligned_cols=86  Identities=19%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      .++-+-|.-++++.+|..++++|...+..-|.+      .+....++.||..+.+.+.|++.++.|-+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345567778889999999999999999876643      56677789999999999999999999999999987665555


Q ss_pred             HHHHHHHHHHHH
Q psy1039         122 SRLFAIVTKRMQ  133 (206)
Q Consensus       122 ~~~~~~~~~~~~  133 (206)
                      ......-+...+
T Consensus       435 ~~~~~~E~~Se~  446 (872)
T KOG4814|consen  435 LQSFLAEDKSEE  446 (872)
T ss_pred             HHHHHHhcchHH
Confidence            544444333333

>KOG0530|consensus

Probab=94.60  E-value=1.7  Score=33.95  Aligned_cols=119  Identities=11%  Similarity=0.052  Sum_probs=104.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHhhhCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND-KVIEDCSKSLEIVPD   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l~p~   79 (206)
                      |..+|.+-..|..+-.++-..+ +..+-++++...++-+ |.   +...|+.+-......|+.. .-++.+..++..+..
T Consensus        70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pK---NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK  145 (318)
T KOG0530|consen   70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PK---NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK  145 (318)
T ss_pred             HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc
Confidence            5678888888888888777765 5677889999999999 98   8999999999999999988 889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      |..+|..+-.+....+.|+.-..+....++.|-.|-++++..-.+
T Consensus       146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv  190 (318)
T KOG0530|consen  146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV  190 (318)
T ss_pred             chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence            999999999999999999999999999999988777777664433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.58  E-value=0.068  Score=25.75  Aligned_cols=23  Identities=26%  Similarity=0.120  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAK  105 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~  105 (206)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2396|consensus

Probab=94.57  E-value=0.26  Score=41.58  Aligned_cols=76  Identities=14%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCCCCHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +.+...|.......-+.+.+.+--..|.+++... |+   ++.+|..-|.-.+.-+. .+.|...|.++++.+|+++..|
T Consensus       102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence            3466677777777777777999999999999999 99   89999998887777776 9999999999999999998765


Q ss_pred             H
Q psy1039          85 F   85 (206)
Q Consensus        85 ~   85 (206)
                      .
T Consensus       178 ~  178 (568)
T KOG2396|consen  178 K  178 (568)
T ss_pred             H
Confidence            4

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.50  E-value=0.075  Score=28.35  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      .++..+|.+-+..++|++|+.+|.+++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356678888888888888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0529|consensus

Probab=94.45  E-value=0.41  Score=39.41  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=82.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHhh
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----QNDKVIEDCSKSLE   75 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~   75 (206)
                      |..+|+.-.+|+.+-.++.+.+  +|..=+...+++++.+ |.   +..+|..+=-+.....    ...+=++++.+++.
T Consensus       102 L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D-~R---Nfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~  177 (421)
T KOG0529|consen  102 LKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQD-PR---NFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN  177 (421)
T ss_pred             HHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-cc---cccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence            5678888888999888888776  3677888889999988 86   5666555444333322    25667788888888


Q ss_pred             hCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          76 IVPDDPKALFRRCQAYEA------IGK------FEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        76 l~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      -++.|..+|..+..++..      .|+      ..+-...-..++-.+|+++..+...
T Consensus       178 ~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  178 DNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             ccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            888888888888776653      231      2334555566777888888777663

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.40  E-value=0.3  Score=38.51  Aligned_cols=58  Identities=16%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      +..-+..|...|.+.+|++.++++++++|-+...+..+-.++..+|+--++.+.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3344555566666666666666666666666666666666666666655555555443

>KOG1839|consensus

Probab=94.36  E-value=1.3  Score=41.59  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=108.9

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE----ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+..++..+...|++++|+..-.++.-+..+    +++.....+.+++...+..++...|...+.++..+   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            46888899999999999999999999998877765530    12337788999999999999999999999998766   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                           .|.-.-...+++.++..++.++-|..+.+.|+...-        ........++++....++...+.. -.+...
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~-~ek~t~ 1126 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE-HEKVTY 1126 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH-HHhhHH
Confidence                 344455667888899999999999999999988532        123445556666666666555332 122234


Q ss_pred             HHHHHhcC
Q psy1039         144 NMFKYVFD  151 (206)
Q Consensus       144 ~~~~~~~~  151 (206)
                      .+|+..+.
T Consensus      1127 ~iy~~qlg 1134 (1236)
T KOG1839|consen 1127 GIYKEQLG 1134 (1236)
T ss_pred             HHHHHhhC
Confidence            56666666

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.23  E-value=0.2  Score=39.04  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy1039          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA   93 (206)
Q Consensus        28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~   93 (206)
                      |..+|.+|+.+. |+   ++..|..+|......|+.=.|+-+|-+++-....++.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~-P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLL-PS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH--TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhC-CC---CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            678899999999 88   788889999999888999999988888887766677788888777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1258|consensus

Probab=93.92  E-value=3.9  Score=35.44  Aligned_cols=121  Identities=10%  Similarity=0.025  Sum_probs=76.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKA   83 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~   83 (206)
                      ++.+-..|......-...|+++...-.|++++-.+ ..   ....|...+.-....|+.+-|...+.++.++. |..+..
T Consensus       293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~---Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i  368 (577)
T KOG1258|consen  293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-AL---YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII  368 (577)
T ss_pred             cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hh---hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence            34455556666666667777777777777777766 55   56667777776666677777776666666553 444555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      ...-+..-...|++..|...++++..-.|+...+...-..+..+.+
T Consensus       369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~  414 (577)
T KOG1258|consen  369 HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG  414 (577)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence            5555666666677777777777777666665554444444443333

>KOG0529|consensus

Probab=93.77  E-value=3.4  Score=34.25  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC----CH
Q psy1039          24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG----KF   97 (206)
Q Consensus        24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g----~~   97 (206)
                      -+++-+.+...+++.+ |+   +..+|+.+.-++.+.+.  +..=++.++++++.+|.|-.+|..+=.+.....    ..
T Consensus        90 ~ld~eL~~~~~~L~~n-pk---sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~  165 (421)
T KOG0529|consen   90 LLDEELKYVESALKVN-PK---SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE  165 (421)
T ss_pred             hhHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence            4666778899999999 99   89999999999987764  788899999999999999888776654444333    25


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCChhhh
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN-----EQLQNKVHNMFKYVFDTSAPMDKR  159 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  159 (206)
                      .+-.....+++.-++.|-.++..-..+...+...+..-     .-+.+......+.++.+|.|...+
T Consensus       166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W  232 (421)
T KOG0529|consen  166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW  232 (421)
T ss_pred             hhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence            66778888999999999888888777766443322211     112223444555555555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.77  E-value=0.1  Score=25.10  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFY   32 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~   32 (206)
                      .+.+|..+...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344455555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0985|consensus

Probab=93.74  E-value=4.2  Score=37.87  Aligned_cols=134  Identities=10%  Similarity=0.029  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------------------------CHHHHHHHHHHHHHcCCHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------------------------DPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------------------------~~~~~~~la~~~~~~g~~~~A  100 (206)
                      +.+-|..++.++..+|+|..|....++|-....-                         +.+-+-.+..-|...|.|++-
T Consensus      1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence            3445778999999999999999988887543210                         011233456668888999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCChhhhHHHHhhhhHhcccchh
Q psy1039         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-----TSAPMDKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a  175 (206)
                      +..++.++.++..|......++-++.+.+-.+-..     ..+-+..+..-     ...+...|..+.-.|.+-..++.|
T Consensus      1299 Isl~Ea~LGLERAHMgmfTELaiLYskykp~km~E-----Hl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKYKPEKMME-----HLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            99999999998888888888888876544222111     12222222221     134567788888888888888888


Q ss_pred             hHHHHhcch
Q psy1039         176 AEMLLKSGV  184 (206)
Q Consensus       176 ~~~~~~~~~  184 (206)
                      +--+|.-|.
T Consensus      1374 a~tmm~h~t 1382 (1666)
T KOG0985|consen 1374 ALTMMEHPT 1382 (1666)
T ss_pred             HHHHHhCCh
Confidence            888776654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.63  E-value=1.5  Score=32.82  Aligned_cols=77  Identities=9%  Similarity=0.061  Sum_probs=57.6

Q ss_pred             HHHccCHHHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHH
Q psy1039          57 YLKQNQNDKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT----NKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        57 ~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~  130 (206)
                      ++....-.+|..-|-++- -.|  +.+...+.+|..|. ..+-+.++..+-+++++.+.    |+++...++.++...++
T Consensus       116 ~Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            344545667777775533 333  46777888886555 78899999999999998654    48999999999999888


Q ss_pred             HHHHH
Q psy1039         131 RMQEN  135 (206)
Q Consensus       131 ~~~~~  135 (206)
                      .+.+.
T Consensus       194 ~e~AY  198 (203)
T PF11207_consen  194 YEQAY  198 (203)
T ss_pred             hhhhh
Confidence            87765

>KOG1310|consensus

Probab=93.62  E-value=0.73  Score=39.41  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI---GKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~  122 (206)
                      ..+-+..-|.-.+..+.+..|+..|.+++..-|+....+.+++.++.+.   |+.-.|+..+..+++++|....++..|.
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            3444555555555667789999999999999999999999999888876   5677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1039         123 RLFAIVTKRMQEN  135 (206)
Q Consensus       123 ~~~~~~~~~~~~~  135 (206)
                      +....++....+.
T Consensus       453 ~aL~el~r~~eal  465 (758)
T KOG1310|consen  453 RALNELTRYLEAL  465 (758)
T ss_pred             HHHHHHhhHHHhh
Confidence            9999999887744

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.59  E-value=1.5  Score=29.48  Aligned_cols=72  Identities=11%  Similarity=0.057  Sum_probs=54.4

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHH
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---ALFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  118 (206)
                      ++..++..|++-+|++..+..+..++.+..   .+..-|.++..+..           .-.+++++.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            467788999999999999999999887764   44455777766543           2458899999999999985555


Q ss_pred             HHHHHH
Q psy1039         119 PVLSRL  124 (206)
Q Consensus       119 ~~l~~~  124 (206)
                      ..++.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            555444

>KOG1839|consensus

Probab=93.52  E-value=2.6  Score=39.73  Aligned_cols=168  Identities=14%  Similarity=0.066  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--   77 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--   77 (206)
                      ..+...++.|......|.+.+|.+ ..+++.+..       |+   .+..+..++..+...|++++|+.+..++.-+.  
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~---~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR 1005 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPE---VASKYRSLAKLSNRLGDNQEAIAQQRKACIISER 1005 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchh---HHHHHHHHHHHHhhhcchHHHHHhcccceeeech
Confidence            567788899999999999998888 333333320       44   78899999999999999999999999887553  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNK---AIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                            |+....+-+++...+..++...|...+.++..+     .|++|   .+..+++.+...+++.+.+.+-.+. +.
T Consensus      1006 ~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~-A~ 1084 (1236)
T KOG1839|consen 1006 VLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES-AL 1084 (1236)
T ss_pred             hccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH-HH
Confidence                  344667888888888888888898888887774     34454   3445555555555665555442222 22


Q ss_pred             HHHHHhcCC-C-CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         144 NMFKYVFDT-S-APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       144 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..-++...+ + .........++.....+.+..|.+..
T Consensus      1085 a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1085 AKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred             HHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            233333331 1 22333344555555566665555444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=4.7  Score=35.00  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhccccCcHHHHHHHHH--HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1039          27 TALDFYTKALKVTAEESHERATCLKN--RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA  104 (206)
Q Consensus        27 ~A~~~~~~al~~~~p~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~  104 (206)
                      .++..+...+..+ |.   +..++..  +...+...+....+.-.+..++..+|++..++.++|.+....|..-.+...+
T Consensus        49 ~~~~a~~~~~~~~-~~---~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          49 LAIYALLLGIAIN-DV---NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             HHHHHHHccCccC-CC---CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            3666677777777 66   3443222  6888888899999999999999999999999999999999888887777666


Q ss_pred             HH-HHhcCCCChhHHHHHHHHHH
Q psy1039         105 KH-IHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus       105 ~~-al~~~p~~~~~~~~l~~~~~  126 (206)
                      .. +....|++......+...+.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHH
Confidence            65 88899999887777744443

>KOG3807|consensus

Probab=93.35  E-value=3.7  Score=33.35  Aligned_cols=115  Identities=14%  Similarity=0.067  Sum_probs=75.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--------------
Q psy1039          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------------   78 (206)
Q Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--------------   78 (206)
                      +..-....+..+..+-|+.-..+++++ |+   -+.+|..++.-  ..--..+|...++++++.-.              
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN-~e---CA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~  261 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEIN-NE---CATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSP  261 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcC-ch---hhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence            444456667778888888889999999 88   67777766643  23345666666666664311              


Q ss_pred             ---------CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHH
Q psy1039          79 ---------DDPK--ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        79 ---------~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~  133 (206)
                               .+.-  ...++|.|..++|+..+|++.++...+-.|-.  -.++.++-+....++.+.+
T Consensus       262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD  329 (556)
T KOG3807|consen  262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD  329 (556)
T ss_pred             chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1122  34578999999999999999999888766622  2344455444444444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.20  E-value=2.5  Score=30.98  Aligned_cols=65  Identities=9%  Similarity=0.108  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      --..+..+|.-|.+.|++++|++.|.++..-...   -.+.++.+-.+.+..++|.....+..++-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3467889999999999999999999998765433   3567888999999999999999998888765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.12  E-value=2.1  Score=35.76  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhCC--------C-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIVP--------D-----D-----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~p--------~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      -|...+++++|..|.--|..++++..        .     +     ...--.+..||..+++.+-|.....+.+.++|.+
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            34455666777776666666666522        1     1     1123457899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q psy1039         115 KAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ..-+..-+.+.+.+.++..+.+
T Consensus       262 frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877665

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.84  E-value=2.9  Score=30.73  Aligned_cols=87  Identities=9%  Similarity=0.029  Sum_probs=38.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CC--HHHHHHHH
Q psy1039          13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DD--PKALFRRC   88 (206)
Q Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~--~~~~~~la   88 (206)
                      |..+..+.+.|..++|+.-|...-+.+  ...+..-+....|......|+-..|+.+|..+-.-.|  .-  --+.++-|
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg--~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTG--YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            344444455555555555555443322  1111233344445555555555555555555443322  11  12333344


Q ss_pred             HHHHHcCCHHHHH
Q psy1039          89 QAYEAIGKFEEAY  101 (206)
Q Consensus        89 ~~~~~~g~~~~A~  101 (206)
                      .++...|.|++-.
T Consensus       140 ~lLvD~gsy~dV~  152 (221)
T COG4649         140 YLLVDNGSYDDVS  152 (221)
T ss_pred             HHHhccccHHHHH
Confidence            4555555554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.83  E-value=0.52  Score=26.02  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.81  E-value=0.64  Score=38.59  Aligned_cols=59  Identities=10%  Similarity=0.043  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEI---------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ...+...+.-+|+|..|+...+.. .+         -+.+...+|..|.+|.-+++|.+|++.|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556667778888877776542 12         223455677778888888888888887776653

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.68  E-value=1.5  Score=37.18  Aligned_cols=113  Identities=14%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK   96 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~   96 (206)
                      ...+..|+.-.|-+-...+++.. |.   .+.....++..+..+|.|+.+......+-.+-..-.++..-+-..+..+|+
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~-~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQ-QQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhC-CC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence            44567888888988888889888 77   667777788999999999999999887666655556666677788899999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                      +++|.....-.+.-+-+++++....+.....++-..+
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~  409 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK  409 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence            9999888877776655666554443333334443333

>KOG2041|consensus

Probab=92.67  E-value=3.5  Score=36.72  Aligned_cols=100  Identities=11%  Similarity=-0.017  Sum_probs=55.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh---
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE---   75 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---   75 (206)
                      +| ++..|..++...+..-.++-|..-|-+.-... +-      +..... -..+|..----|+|++|...|-.+=+   
T Consensus       689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~-~~q~aei~~~~g~feeaek~yld~drrDL  765 (1189)
T KOG2041|consen  689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSK-EQQRAEISAFYGEFEEAEKLYLDADRRDL  765 (1189)
T ss_pred             CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhH-HHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence            44 67889999998888888888877766654432 10      000000 11233333334666666655532211   


Q ss_pred             -------------------h---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          76 -------------------I---VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        76 -------------------l---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                                         .   +.+   ...++.+.|..+..+..|++|.++|..+
T Consensus       766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                               1   111   1346777777777777777777777654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.37  E-value=8.6  Score=35.08  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCH-
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDP-   81 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~-   81 (206)
                      ++.--..|.+....|+++.|+++.+.++..- |..  .....++...|.+....|++.+|..+...+.++    +.... 
T Consensus       458 ae~~aL~a~val~~~~~e~a~~lar~al~~L-~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~  536 (894)
T COG2909         458 AEFQALRAQVALNRGDPEEAEDLARLALVQL-PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA  536 (894)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence            4556667889999999999999999999987 641  224567888999999999999999999988877    33333 


Q ss_pred             -HHHHHHHHHHHHcCC--HHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          82 -KALFRRCQAYEAIGK--FEEAYTDAKHIHRV----EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        82 -~~~~~la~~~~~~g~--~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                       .+.+..+.++...|+  +.+....+...-..    .|-+.-.......+....-......   . .....++.-.. .+
T Consensus       537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~---~-ear~~~~~~~~~~~  612 (894)
T COG2909         537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAE---A-EARLGIEVGSVYTP  612 (894)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhh---H-Hhhhcchhhhhccc
Confidence             334455888889994  33334444433332    2222212122112211111111100   0 01111222222 23


Q ss_pred             CChhhh---HHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         154 APMDKR---VTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       154 ~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .....+   ..++.+..-.|+.++|...+      ..+.-++.
T Consensus       613 ~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l------~~~~~l~~  649 (894)
T COG2909         613 QPLLSRLALSMLAELEFLRGDLDKALAQL------DELERLLL  649 (894)
T ss_pred             chhHHHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHHhc
Confidence            332222   36788889999999988887      66666666

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.33  E-value=5.9  Score=33.08  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=46.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039          13 KESGNSAFKQGDYETALDFYTKALKVTAEE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      ..+-+++.-.|+|..|++..+. ++++ ..      ..-....++..|-||+.+++|.+|+..|..++
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~-idl~-~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLEN-IDLN-KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhc-cCcc-cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455788889999999998765 3333 11      12256778999999999999999999999977

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.22  E-value=1.2  Score=35.18  Aligned_cols=65  Identities=8%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      ...++..++..+...|+++.++..+++.+..+ |-   +-..|..+-..|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35567788899999999999999999999999 98   7889999999999999999999999986654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.05  E-value=8.2  Score=34.12  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---
Q psy1039           7 NDYNKLKESGNSAF-KQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---   79 (206)
Q Consensus         7 ~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---   79 (206)
                      ..+...+.+|.+++ ...+++.|..++.+++.+. ...   .....+-+.++.++.+.+... |...++++++.-..   
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            35678889999998 6889999999999999987 431   123445566788888888777 99999998876444   


Q ss_pred             -CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHH
Q psy1039          80 -DPKALFRRC--QAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLS  122 (206)
Q Consensus        80 -~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  122 (206)
                       .+...+++-  ..+...+++..|...++......  ++++.+...+.
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~  182 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS  182 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence             233334433  22333379999999999988876  45555544433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.94  E-value=3  Score=31.82  Aligned_cols=59  Identities=10%  Similarity=0.128  Sum_probs=31.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      .+++.+..++|+...+.-++-. |.   +......+-..+...|+|++|...++-+-++.|.+
T Consensus        10 eLL~~~sL~dai~~a~~qVkak-Pt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAK-PT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcC-Cc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            4445555555555555555555 54   44444444455555555555555555555555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.82  E-value=3.9  Score=31.60  Aligned_cols=82  Identities=13%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC------CHHHHHHHHHHHHHcC
Q psy1039          25 YETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------DPKALFRRCQAYEAIG   95 (206)
Q Consensus        25 ~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~la~~~~~~g   95 (206)
                      ....|+++.+|+... ..   ..+...+...+|.-|+..|+|++|...|+.+....-.      .......+..|+..+|
T Consensus       154 s~~iI~lL~~A~~~f-~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  154 SKLIIELLEKAYEQF-KKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            345667777777765 31   2334566778999999999999999999998654221      2445667788999999


Q ss_pred             CHHHHHHHHHHH
Q psy1039          96 KFEEAYTDAKHI  107 (206)
Q Consensus        96 ~~~~A~~~~~~a  107 (206)
                      +.+..+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            988887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.31  E-value=2.1  Score=33.13  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      ......+|..|+..|+|++|+.+|+.+.... ..   ......++..+..|+..+|+.+..+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y-r~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSY-RREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4456789999999999999999999997654 21   23456778889999999999999888876654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.15  E-value=2.2  Score=30.08  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      ....+...+..|++.-|......++..+|+|..+......++..++..
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            334444444555555555555555555555555555555555554443

>KOG1258|consensus

Probab=90.65  E-value=11  Score=32.86  Aligned_cols=157  Identities=11%  Similarity=0.014  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      -.+.|...+......|+.+-|-..+.++.+..-|.   .+.+...-+..-...|++..|...+++...-.|....+-...
T Consensus       330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~---~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~  406 (577)
T KOG1258|consen  330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKK---TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK  406 (577)
T ss_pred             hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC---CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence            35678888888888899999998899988875355   566666666666778999999999999997779999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  164 (206)
                      .......|+.+.+....+.....  .-.+..+...+..-+.++.....   ..-..+...+..+.+ .|.+.........
T Consensus       407 ~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~---~d~~~a~~~l~~~~~~~~~~k~~~~~~~~  483 (577)
T KOG1258|consen  407 INWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR---EDADLARIILLEANDILPDCKVLYLELIR  483 (577)
T ss_pred             HhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh---cCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence            99999999999998422222222  22344444333333333222211   111235567777777 6777776666666


Q ss_pred             hhhHhc
Q psy1039         165 NLVVLA  170 (206)
Q Consensus       165 ~~~~~~  170 (206)
                      ..+...
T Consensus       484 ~~~~~~  489 (577)
T KOG1258|consen  484 FELIQP  489 (577)
T ss_pred             HHHhCC
Confidence            555443

>KOG3616|consensus

Probab=90.57  E-value=4.8  Score=36.25  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH------HHhccc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTK------ALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----   76 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~------al~~~~---p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----   76 (206)
                      +.+-..|..|-+..++++|+++|.+      ++++..   |.  .-..+-...|.-+...|+++-|+..|-.+--+    
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~--evv~lee~wg~hl~~~~q~daainhfiea~~~~kai  739 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE--EVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI  739 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH--HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            4455667778888889999998765      343321   22  11222233455556666666666665432111    


Q ss_pred             -------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          77 -------------------VP--DDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        77 -------------------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                                         ..  .-...|-..+.-|...|+|+-|.+.|.++
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                               00  11223445677888888888888887665

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.54  E-value=1.8  Score=34.39  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ..+...+..|...|.+.+|+++.++++.++ |=   +...+..+-..+..+|+-.+++..|++.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL---~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PL---SEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hh---hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345667788999999999999999999999 86   7888888999999999988888888764

>KOG2422|consensus

Probab=90.43  E-value=11  Score=32.78  Aligned_cols=143  Identities=16%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             cCCHHHHHHHHHHHHhccccC--------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----hCCCC--------
Q psy1039          22 QGDYETALDFYTKALKVTAEE--------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IVPDD--------   80 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p~~--------   80 (206)
                      ..-|++|...|.-+....+|+        .+++...+...+.+...+|+.+-|.....+++-     +.|.+        
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            456888888888887765343        467888999999999999999988888887762     23322        


Q ss_pred             -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1039          81 -----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTK-RMQENEQLQNKVHNMFK  147 (206)
Q Consensus        81 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~  147 (206)
                                 ..++++.-..+.+.|++.-|.+.++-.+.++|. +|-....+-.++....+ +..        +.++++
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqw--------iI~~~~  402 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQW--------IIELSN  402 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHH--------HHHHHH
Confidence                       123445556677889999999999999999998 88777766666654333 222        223333


Q ss_pred             HhcC-----CCCChhhhHHHHhhhhHhccc
Q psy1039         148 YVFD-----TSAPMDKRVTAVNNLVVLARE  172 (206)
Q Consensus       148 ~~~~-----~~~~~~~~~~~~~~~~~~~~~  172 (206)
                      ..-.     .-.+..+...+|..++.....
T Consensus       403 ~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~  432 (665)
T KOG2422|consen  403 EPENMNKLSQLPNFGYSLALARFFLRKNEE  432 (665)
T ss_pred             HHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence            3211     134455666667766666553

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.18  E-value=2.5  Score=29.79  Aligned_cols=53  Identities=23%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE   99 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~   99 (206)
                      .......+...+..|++.-|.+..+.++..+|+|..+...++.++.++|.-.+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            55677788889999999999999999999999999999999999998876544

>KOG0890|consensus

Probab=89.91  E-value=9.7  Score=38.50  Aligned_cols=117  Identities=15%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCC---
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDD---   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~---   80 (206)
                      +..-++.|.+.|.+..+.|+++.|-...-.|.+..      -+.++..+|..++..|+-..|+..+++.+.++ |++   
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence            44568899999999999999999999988888876      36788999999999999999999999999664 331   


Q ss_pred             -------------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          81 -------------PKALFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        81 -------------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                                   ..+.+..+.-....|++  .+-.+.|..+.+..|...+-+..++.-+.+
T Consensus      1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence                         12344444444455554  345788999999999777666666644443

>KOG1914|consensus

Probab=89.72  E-value=13  Score=32.29  Aligned_cols=73  Identities=15%  Similarity=0.051  Sum_probs=65.6

Q ss_pred             HHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          33 TKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        33 ~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ++-++.+ |.   +..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|-..........+|+.-.+.|.+|+.-
T Consensus        10 ~~rie~n-P~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEEN-PY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcC-Cc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5667788 88   899999888777555 9999999999999999999999999999999999999999999999874

>KOG2422|consensus

Probab=89.53  E-value=13  Score=32.40  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cC-------------c---HHHHHHHHHHHHHHHHcc
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EE-------------S---HERATCLKNRAAVYLKQN   61 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~-------------~---~~~~~~~~~la~~~~~~~   61 (206)
                      |..+|-+...+..++..+-.+|+.+-|-....+++-..+    |.             .   ....-+++.--..+.+.|
T Consensus       277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG  356 (665)
T KOG2422|consen  277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG  356 (665)
T ss_pred             eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            456788999999999999999999998888777775331    11             0   112222333334456789


Q ss_pred             CHHHHHHHHHHHhhhCCC-CHHHHHHHH
Q psy1039          62 QNDKVIEDCSKSLEIVPD-DPKALFRRC   88 (206)
Q Consensus        62 ~~~~A~~~~~~al~l~p~-~~~~~~~la   88 (206)
                      -+.-|.++|.-.+.++|. ++-+...+-
T Consensus       357 C~rTA~E~cKlllsLdp~eDPl~~l~~I  384 (665)
T KOG2422|consen  357 CWRTALEWCKLLLSLDPSEDPLGILYLI  384 (665)
T ss_pred             ChHHHHHHHHHHhhcCCcCCchhHHHHH
Confidence            999999999999999998 765544443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=89.20  E-value=12  Score=31.11  Aligned_cols=64  Identities=14%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccCcHHHHHHHHH--HHHHHHHccCHHHHHHHHHHHhhh
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKN--RAAVYLKQNQNDKVIEDCSKSLEI   76 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l   76 (206)
                      .-....+..+++.++|..|...+...++. . ++..  ...+..  .|..++..-+|.+|.+.++..+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~-~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLP-GREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-chhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            35567888999999999999999999985 4 4422  234444  455567888999999999987653

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.09  E-value=1.8  Score=32.97  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             HHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        55 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ..+.+.+...+++...+.-++-+|.+......+-..+.-.|+|+.|..-++-+-++.|+...-......+...
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3556788999999999999999999999999999999999999999999999999999986655555444433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.03  E-value=13  Score=31.56  Aligned_cols=147  Identities=13%  Similarity=0.034  Sum_probs=93.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++.+|++.-.|+.+-..+-.+|.+++-.+.|++...-. |-   -..+|...-.--+..++|+.....|.+++.-.-. .
T Consensus        35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~---~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l  109 (660)
T COG5107          35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PI---MEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L  109 (660)
T ss_pred             hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-cc---ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Confidence            56899999999999999999999999999999998877 74   3444443333333457888888888888754322 2


Q ss_pred             HHHHH-HHHHHHHc----C----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC
Q psy1039          82 KALFR-RCQAYEAI----G----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM-QENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        82 ~~~~~-la~~~~~~----g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  151 (206)
                      +.|.. +..+-...    |    ...+|.+.--.+.-.+|.....+...+.-........ ....+.-..+...|.+++.
T Consensus       110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~  189 (660)
T COG5107         110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ  189 (660)
T ss_pred             hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence            22211 11111111    1    1234444444455578999888888877665443321 1122223357889999999


Q ss_pred             CC
Q psy1039         152 TS  153 (206)
Q Consensus       152 ~~  153 (206)
                      .|
T Consensus       190 tP  191 (660)
T COG5107         190 TP  191 (660)
T ss_pred             Cc
Confidence            55

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.95  E-value=1.3  Score=21.65  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039          63 NDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus        63 ~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ++.|...|++++...|.++..|..
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~   26 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLK   26 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHH
Confidence            444444455555444444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.57  E-value=3.2  Score=35.16  Aligned_cols=48  Identities=19%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ...++.|+.+.|.+..   -+++      +...|..+|...+..|+++-|..+|.++
T Consensus       326 eLAl~lg~L~~A~~~a---~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  326 ELALQLGNLDIALEIA---KELD------DPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHCT-HHHHHHHC---CCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHhcCCHHHHHHHH---HhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            3445667777764332   2222      4567777888777888888877777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.54  E-value=17  Score=32.17  Aligned_cols=87  Identities=15%  Similarity=0.073  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHhhhC--CCCHH----HHHHHHHHHHHcCCHH
Q psy1039          26 ETALDFYTKALKVTAEESHERATCLKNRAAVYL-KQNQNDKVIEDCSKSLEIV--PDDPK----ALFRRCQAYEAIGKFE   98 (206)
Q Consensus        26 ~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~l~--p~~~~----~~~~la~~~~~~g~~~   98 (206)
                      ..|+.+++-+++..++.+...+.+++.+|..++ ...++++|..++++++.+.  ++..+    +-+.++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            456888888884221455567888999999887 7889999999999998776  44443    3455688888888888


Q ss_pred             HHHHHHHHHHhcCCC
Q psy1039          99 EAYTDAKHIHRVEPT  113 (206)
Q Consensus        99 ~A~~~~~~al~~~p~  113 (206)
                       |...+++.++...+
T Consensus       118 -a~~~l~~~I~~~~~  131 (608)
T PF10345_consen  118 -ALKNLDKAIEDSET  131 (608)
T ss_pred             -HHHHHHHHHHHHhc
Confidence             99999998886544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.39  E-value=1.6  Score=21.33  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=25.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        95 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      |+++.|...|++++...|.++.++......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578899999999999999998888776544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.55  E-value=5.2  Score=25.12  Aligned_cols=60  Identities=20%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR---CQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~a  107 (206)
                      .-....|.-++..++..+|+...+++++..++.++.+..+   ..+|...|+|.+.++...+=
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777788899999999999998888877665555   46688888888877665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.35  E-value=1.8  Score=26.91  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=9.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q psy1039          14 ESGNSAFKQGDYETALDFYTKAL   36 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al   36 (206)
                      ..+..+=+.|++++|+.+|+.++
T Consensus        11 ~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682          11 INAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            33333334444444444433333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3783|consensus

Probab=87.15  E-value=5.6  Score=34.17  Aligned_cols=86  Identities=10%  Similarity=-0.023  Sum_probs=64.9

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      ..|+.+..+...+..+...|+-+.|+.++...+. . .-+...+..++.+|-++..+.+|..|..++......+.-+...
T Consensus       262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~-~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~  339 (546)
T KOG3783|consen  262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-I-RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF  339 (546)
T ss_pred             hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence            4577777888888888888998888999998887 3 3233467788899999999999999999999887766544433


Q ss_pred             HHHHH-HHH
Q psy1039          84 LFRRC-QAY   91 (206)
Q Consensus        84 ~~~la-~~~   91 (206)
                      |..++ -|+
T Consensus       340 Y~Yfa~cc~  348 (546)
T KOG3783|consen  340 YTYFAGCCL  348 (546)
T ss_pred             HHHHHHHHH
Confidence            43333 444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.84  E-value=1.7  Score=23.90  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039          51 KNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus        51 ~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.64  E-value=2.2  Score=25.79  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV   38 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   38 (206)
                      .+..+...|..+=+.|++++|+.+|..+++.
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3445556666666677777777776666654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.24  E-value=20  Score=30.48  Aligned_cols=63  Identities=19%  Similarity=0.105  Sum_probs=41.1

Q ss_pred             HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                      .+.|+++.|.+...     ..+++..|-++|......|+++-|.++|+++-.        ...+..++...++.+.
T Consensus       329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREK  391 (443)
T ss_dssp             HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred             HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHH
Confidence            35566666655442     234778999999999999999999999988732        3444455555554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=86.01  E-value=2.5  Score=32.35  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=62.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhccc--cC------cHHHHHHHHHHHHHHHHccCHH-HH-HHHHHHHhhh--CCCCHHH--H
Q psy1039          19 AFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQND-KV-IEDCSKSLEI--VPDDPKA--L   84 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~--p~------~~~~~~~~~~la~~~~~~~~~~-~A-~~~~~~al~l--~p~~~~~--~   84 (206)
                      .+..|+|+.|+++..-+|+.+-  |+      +..-++-...-+......|+.- -. ...+.....-  -|+-..+  +
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            4568999999999999999763  32      1222333444455555566521 11 1122222110  1333333  3


Q ss_pred             HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          85 FRRCQAYE---------AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        85 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      -..|..+.         ..++...|...+++++.++|+. .+...+.++...++
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr  225 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence            34466563         4568889999999999999764 34444444444443

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.98  E-value=7.7  Score=31.52  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039          24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPDDPKALFRRCQAYEAIGKFEEAY  101 (206)
Q Consensus        24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~~~~~la~~~~~~g~~~~A~  101 (206)
                      +|..-..+|.-...+. |+    +..-.|++.+.-+..-...++...+....-  -......+-.+|..+.++|+.++|.
T Consensus       311 DW~~I~aLYdaL~~~a-pS----PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr  385 (415)
T COG4941         311 DWPAIDALYDALEQAA-PS----PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEAR  385 (415)
T ss_pred             ChHHHHHHHHHHHHhC-CC----CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHH
Confidence            4444445555555555 64    445566676665555555555555443322  1122334556799999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHH
Q psy1039         102 TDAKHIHRVEPTNKAIQPVLSR  123 (206)
Q Consensus       102 ~~~~~al~~~p~~~~~~~~l~~  123 (206)
                      ..|++++.+.++..+.......
T Consensus       386 ~aydrAi~La~~~aer~~l~~r  407 (415)
T COG4941         386 AAYDRAIALARNAAERAFLRQR  407 (415)
T ss_pred             HHHHHHHHhcCChHHHHHHHHH
Confidence            9999999999887766554443

>KOG0546|consensus

Probab=85.00  E-value=0.94  Score=36.66  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY   91 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~   91 (206)
                      ..+.+..-++.+.+..|+..-..+++.+ ++   ...+++.++..+....++++|++++..+....|++....-.+..+-
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~-~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDE-RS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccC-hh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            3446777778888888888878888877 77   7889999999999999999999999999999999877655555444


Q ss_pred             HHcCCH
Q psy1039          92 EAIGKF   97 (206)
Q Consensus        92 ~~~g~~   97 (206)
                      ....++
T Consensus       354 ~~~~~~  359 (372)
T KOG0546|consen  354 QKKKQY  359 (372)
T ss_pred             hHHHHH
Confidence            444433

>KOG0985|consensus

Probab=84.92  E-value=36  Score=32.25  Aligned_cols=133  Identities=15%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..|..+|.+....|...+|++.|     +..+++..|...-.+..+.|.|++-++++..+-+.- ..+.+...+-..+
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSy-----ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESY-----IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAY 1176 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHH-----HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHH
Confidence            4678999999999999999999999     445788889999999999999999999988776532 3334444444444


Q ss_pred             HHHHHHHHHHHHH-----------HHHH--HHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         126 AIVTKRMQENEQL-----------QNKV--HNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       126 ~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      .+.++..+...-+           ..++  ..+|+.+.-.=....-+-+++..+..+|.+..|...-.|--.
T Consensus      1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            4443332211100           0000  112222211112234466778888888888877776655433

>PF12854 PPR_1: PPR repeat

Probab=84.77  E-value=3.5  Score=21.02  Aligned_cols=24  Identities=17%  Similarity=0.128  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDC   70 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~   70 (206)
                      ...|..+-..|.+.|+.++|.+.|
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~   30 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELF   30 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHH
Confidence            334444444444555555554444

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.67  E-value=2.8  Score=26.10  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV   38 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   38 (206)
                      .+..+...|..+=+.|+|++|+.+|..+++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666554

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.63  E-value=12  Score=26.37  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             HHHHHH-HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          50 LKNRAA-VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        50 ~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      |+.+|. .+..+|+-++--..++...+.+..++..++.+|.+|..+|+..++.+.+.+|=+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444 233445555544555555544556677777788888888888877777766643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2581|consensus

Probab=84.18  E-value=24  Score=29.60  Aligned_cols=107  Identities=14%  Similarity=0.036  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--C--CCHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P--DDPK   82 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p--~~~~   82 (206)
                      +..|+.....+-..|+...--..+...++..+  -+....+.+...+=.+|..-+.|+.|-....+..--+  .  ....
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            45666677777777775554444444444321  1111134455556677888888888888777755211  1  2244


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      ..|.+|.+-.-.++|..|.+++-.|+...|.+.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            567789999999999999999999999998753

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.28  E-value=16  Score=26.98  Aligned_cols=106  Identities=13%  Similarity=-0.002  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHHccCHHHHHHHHHHH-hhhCCCCHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKS-LEIVPDDPKALFRR   87 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a-l~l~p~~~~~~~~l   87 (206)
                      -+....|.+....|+...|+..|..+-.-. |-+... -.+...-+..+...|.|++-..-.+.. -.-+|--..+.-.|
T Consensus        95 LA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          95 LARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            356678888999999999999999887765 432111 234555666777888888877666553 24456566777788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      |.+-++.|++..|...|..+.. +...|..
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprn  202 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRN  202 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence            9999999999999999987765 4444433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.76  E-value=6  Score=29.18  Aligned_cols=50  Identities=28%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        63 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      ....++..++.++..| ++..+.+++.++...|+.++|.....++..+.|.
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            3445555666666666 5667777788888888888888888888777773

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF12854 PPR_1: PPR repeat

Probab=82.58  E-value=4.4  Score=20.66  Aligned_cols=22  Identities=14%  Similarity=0.286  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFY   32 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~   32 (206)
                      .|..+-..+.+.|+.++|.+.|
T Consensus         9 ty~~lI~~~Ck~G~~~~A~~l~   30 (34)
T PF12854_consen    9 TYNTLIDGYCKAGRVDEAFELF   30 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHH
Confidence            4444444555555555554444

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.42  E-value=3.6  Score=25.67  Aligned_cols=29  Identities=14%  Similarity=0.289  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALK   37 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~   37 (206)
                      +..+...|...=..|+|++|+.+|..+++
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34444555555555555555555555544

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.83  E-value=7.6  Score=28.63  Aligned_cols=49  Identities=8%  Similarity=0.163  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus        25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p   78 (206)
                      .+..++..++.++.. |+    +..+.+++.++...|+.++|.....++..+.|
T Consensus       127 l~~~~~~a~~~l~~~-P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  127 LEAYIEWAERLLRRR-PD----PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            444556677777777 85    78888999999999999999999999999999

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG3783|consensus

Probab=81.30  E-value=29  Score=30.06  Aligned_cols=68  Identities=12%  Similarity=0.043  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP-DDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  114 (206)
                      .--++.+|.++..+|+...|..+|..+++-      +| --|.++|.+|..+..+|. ..+|.+.+.+|-....+.
T Consensus       449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            334667999999999999999999988732      22 136799999999999999 999999999998766443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=81.15  E-value=31  Score=30.86  Aligned_cols=52  Identities=8%  Similarity=-0.004  Sum_probs=39.0

Q ss_pred             HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ...++++.+..++...-.-........|++|.++...|+-++|...|+++..
T Consensus       323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4677777777777664333335677899999998889999999999988643

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.91  E-value=11  Score=23.43  Aligned_cols=24  Identities=17%  Similarity=0.113  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      .+..+|.-+-+.|++.+|+.+|+.
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~   31 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKK   31 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            344444444445555555444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=80.70  E-value=25  Score=27.46  Aligned_cols=43  Identities=5%  Similarity=-0.184  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         141 KVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       141 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      ++..+- +.-. +.++.......|..+..-+.+.+|..++.-...
T Consensus        75 ~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~  118 (260)
T PF04190_consen   75 AAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD  118 (260)
T ss_dssp             HHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H
T ss_pred             HHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence            344454 3333 468889999999999999999999888874433

; PDB: 3LKU_E 2WPV_G.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.07  E-value=4  Score=25.34  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT   39 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   39 (206)
                      .+..+...|..-=..|+|++|+.+|..+++..
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~   36 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC   36 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence            34455555555566677777777777776654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-14
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-12
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		7e-12
3now_A	810	Unc-45 From Drosophila Melanogaster Length = 810		6e-10
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-09
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-09
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-09
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		2e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-08
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-08
1wao_1	477	Pp5 Structure Length = 477		1e-07
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-07
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-07
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		4e-07
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		4e-07
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		2e-06
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		2e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-06
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		7e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-06
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		9e-06
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		1e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		2e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		1e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		5e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		6e-04

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +L++ GN  FK GDY  AL  YT+AL + A    ++A   +NRAA +LK    DK   + 
Sbjct: 30  QLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
           SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L
Sbjct: 89  SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
            K  GN+ +KQGDY+ A+++Y KAL++        A+   N    Y KQ    K IE   
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKALELDPN----NASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           K+LE+ P++ KA +RR  AY   G +++A  D +    ++P N
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVT-----AEESHERA-------TCLKNRAAVYLK 59
           LK  GN+ FK  ++E A+  YTK L+       A E  + A       +C+ N  A  LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
            +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    + P +KAIQ 
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 120 VLSRL 124
            L ++
Sbjct: 346 ELLKV 350

>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster Length = 810

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
           N +   KV  M    FD + P+DKR  A NNLVVLA+E +GAE+L K     ++ +L K 
Sbjct: 1   NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV 60
Query: 195 ETNEEIYL 202
           E +++IY+
Sbjct: 61  EKDQDIYV 68

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           LK+ GN  F+   Y+ A+ +Y  AL     E  E      N +A Y+      KV+E  +
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWAL-----ELKEDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSR 123
           K+LE+ PD  K L RR  A E +GKF +A  D   +      N A I+P+L R
Sbjct: 64  KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P++ +A +    AY   G ++EA
Sbjct: 72  LYPNNAEAWYNLGNAYYKQGDYDEA 96

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
           +KE G   FK+G Y+ AL  Y K +     ES       ++A  L+     N A  +LK 
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
                 IE C+K+LE+  ++ K LFRR +A+ A+  FE A  D + + ++ P NKA +  
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
           L    A+  +R++     + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P++ +A +    AY   G ++EA    +    ++P N
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+     +KVIE  
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 82
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
           +K+LEI PD  KAL RR  A E++G F +A  D   +    +    +I+P+L R
Sbjct: 83  TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+     +KVIE  
Sbjct: 23  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 78
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
           +K+LEI PD  KAL RR  A E++G F +A  D   +    +    +I+P+L R
Sbjct: 79  TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 132

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M   N+LKE GN A   G+ + AL  Y++A+K+   + H       NR+A Y K+    K
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNH-VLYSNRSAAYAKKGDYQK 56
Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
             ED  K++++ PD  K   R+  A E + +FEEA
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P   +A +    AY   G ++EA
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEA 88

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
           +KE G   FK+G Y+ AL  Y K +     ES       ++A  L+     N A  +LK 
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
                 IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +  
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
           L    A+  +R++     + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+       + D 
Sbjct: 8   ELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDA 63
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 12  LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
           +KE G   FK G Y  A+  Y K +            +  A ES   A  L N A  YLK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA + 
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR- 388
Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFK 147
              ++F    K  + NE+ +    NMFK
Sbjct: 389 --LQIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D  +    +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+   
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTEC 62
Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
               + D ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 12  LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
           +KE G   FK G Y  A+  Y K +            +  A ES   A  L N A  YLK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60  QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
             +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA + 
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 120 VLSRLFAIVTKRMQENEQLQNKVH-NMFK 147
            +S    +  K+ +E+ +   +++ NMFK
Sbjct: 390 QIS----MCQKKAKEHNERDRRIYANMFK 414

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +   +  +AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +   +  +AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
          GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76 IVPDDPKA 83
          + P++ +A
Sbjct: 72 LDPNNAEA 79

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
          GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 76 IVP 78
          + P
Sbjct: 66 LDP 68

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--------SHERATCLKNR 53
           ++  +   ++ K  GNS FK+   E A+  Y  A+    ++          + A  +KN 
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231
Query: 54  -----AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
                AA  +K  + D+ I  C+  L     +PKALFRR +A   +G+ + A  D +   
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150
           +  P +KAI+  L  L        ++ + L  K   M+K +F
Sbjct: 292 KYAPDDKAIRRELRAL-------AEQEKALYQKQKEMYKGIF 326

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
           +K  GN  F++GDY  A+  YT+A+K   ++    A    NRAA Y K  +    ++DC 
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCE 74
Query: 72  KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + +++ P   K   R+  A EA+  + +A
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKA 103

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYIVNQAAVYFEKGDYNKCRELC 61
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
            K++E+  ++ +       AY  IG     EE Y DA H +
Sbjct: 62  EKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFY 102

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
          +KLK  GN+A  + +Y  A+D YT+AL +    +      L NRAA Y    Q++K  ED
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAED 67
Query: 70 CSKSLEIVPDDPKALFR 86
             +  + P   KA  R
Sbjct: 68 AELATVVDPKYSKAWSR 84

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALK-----VTAEESHERATCLKNRAAVY 57
           D+ +     L++ GN  F Q DY+ A+D Y  AL      +  E+  E      +R  + 
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 58  LKQNQND---------KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
           L  N +          +  E  S+ L+    + KALFRR +A  A  K +EA  D K + 
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQE 134
           R  P   A   V++R   IVT+R  E
Sbjct: 125 RNHP---AAASVVAREMKIVTERRAE 147

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK  GN   K  ++E A+ FY KA+++        A    NRAA Y K       ++DC
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
            +++ I P   KA  R   A  ++ K  EA    K    ++P N+
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 13  KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           K  GN  FK+GDY TA+  Y +A+K       E A    NRAA   K  +  + ++DC  
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
            + +     K   R+     A+ ++ +A    +   +V+P+N+
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LKE GN  F    Y  A   Y +A+      +   A    NRA  YLK  Q ++ + DC
Sbjct: 11  ELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADC 66
Query: 71  SKSLEIVPDDPKALF--RRCQ----AY-EAIGKFEEAYTDAK 105
            ++LE+     KA F   +CQ    +Y EAI   + AY+ AK
Sbjct: 67  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LKE GN  F    Y  A   Y +A+          A    NRA  YLK  Q ++ + DC
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADC 61
Query: 71  SKSLEIVPDDPKALF--RRCQ----AY-EAIGKFEEAYTDAK 105
            ++LE+     KA F   +CQ    +Y EAI   + AY+ AK
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-40
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-34
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-30
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-30
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	9e-29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-27
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  133 bits (336), Expect = 3e-40
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +L++ GN  FK GDY  AL  YT+AL +      ++A   +NRAA +LK    DK   +
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETE 87

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
            SK++E    D KAL+RR QA E +G+ ++A  D +    +EP NK  Q  L  +    +
Sbjct: 88  ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  125 bits (317), Expect = 4e-37
 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 18/153 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------------RATCLKNRAA 55
             L++ GN  F Q DY+ A+D Y  AL                             N + 
Sbjct: 12  EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71

Query: 56  VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
            YL      +  E  S+ L+    + KALFRR +A  A  K +EA  D K + R  P   
Sbjct: 72  CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131

Query: 116 AIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
           ++   ++R   IVT+R  E +         MF+
Sbjct: 132 SV---VAREMKIVTERRAEKKADSRVTYSKMFQ 161

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  121 bits (306), Expect = 4e-35
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE------------RATCLKNRAAVY 57
             +KE GN  FK+ +   A+  Y +AL                       +C  N A  Y
Sbjct: 39  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
            K     K I+  SK L+I  ++ KAL++   A    G  EEA  +      + P N  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVN 164
           +      + +   +++E  +        F  +FD     +++  + N
Sbjct: 159 R----NSYELCVNKLKEARKKDKL---TFGGMFDKGPLYEEKKNSAN 198

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  119 bits (300), Expect = 1e-34
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LK   N  FK  DYE A+ FY++A+++        A    NR+  YL+       + D
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
            ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +        IV 
Sbjct: 70  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 129

Query: 130 KRMQENEQLQNKVHNMFKYVFDTSA 154
           ++  E     ++         D  +
Sbjct: 130 QKAFERAIAGDEHKRSVVDSLDIES 154

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  119 bits (301), Expect = 6e-33
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKV-------TAEESHE----RATCLKNRAAVYL 58
             +KE G   FK+G Y+ AL  Y K +         + EE+ +    R     N A  +L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K       IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             L+       +  ++  + +    NMF+
Sbjct: 268 TQLAVC---QQRIRRQLAREKKLYANMFE 293

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  112 bits (283), Expect = 2e-32
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           N+LKE GN A   G+ + AL  Y++A+K+             NR+A Y K+    K  ED
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYED 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
             K++++ PD  K   R+  A E + +FEEA    +   + E  N  ++  L  +
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  109 bits (274), Expect = 4e-31
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            + K  GN  FK+GDY TA+  Y +A+K   E     A    NRAA   K  +  + ++D
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDD 69

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           C   + +     K   R+     A+ ++ +A    +   +V+P+N+  +  +  
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  108 bits (272), Expect = 1e-30
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+          A    NRA  YLK  Q ++ + D
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 65

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  107 bits (269), Expect = 3e-30
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
             +K  GN  F++GDY  A+  YT+A+K   ++    A    NRAA Y K  +    ++D
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKD 72

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           C + +++ P   K   R+  A EA+  + +A    +    ++ + K       R 
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  109 bits (273), Expect = 7e-29
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKV---------TAEESHE----RATCLKNRAAV 56
           ++ K  GNS FK+   E A+  Y  A+             +        +  C  N AA 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 57  YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
            +K  + D+ I  C+  L     +PKALFRR +A   +G+ + A  D +   +  P +KA
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299

Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
           I+  L  L     +     ++ +     +FK
Sbjct: 300 IRRELRAL---AEQEKALYQKQKEMYKGIFK 327

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  109 bits (274), Expect = 9e-29
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 17/150 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKAL------KVTAEESHE------RATCLKNRAAVY 57
             LK  GN+ FK  ++E A+  YTK L      +  AE++          +C+ N  A  
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           LK +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    + P +KAI
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343

Query: 118 QPVLSRLFAIVTKRMQENEQLQNKVH-NMF 146
           Q  L +    V ++++  +  +   +  MF
Sbjct: 344 QAELLK----VKQKIKAQKDKEKAAYAKMF 369

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  110 bits (275), Expect = 1e-28
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALK-------VTAEESHE----RATCLKNR 53
            +     +KE G   FK G Y  A+  Y K +        ++ +ES            N 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323

Query: 54  AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113
           A  YLK  +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P 
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

Query: 114 NKAIQPVLSRLFAIVTKRMQENEQLQNKV-HNMFK 147
           NKA +       ++  K+ +E+ +   ++  NMFK
Sbjct: 384 NKAAR----LQISMCQKKAKEHNERDRRIYANMFK 414

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  107 bits (268), Expect = 1e-28
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 11/197 (5%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+          A    NRA  YLK  Q ++ + D
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIV 128
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +      +     I 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE------MSGAEMLLKS 182
            K+   + + +        + + T     +R   +               +   +  +++
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 183 GVAKQINTLLKCETNEE 199
              K +  + +  +  +
Sbjct: 181 KHDKYMADMDELFSQVD 197

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  101 bits (255), Expect = 3e-28
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            + +  G   F + D+  A+  YT+ +K   E+    A    NRAA   K     + I D
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C+K++E  P+  +A  R+  A  A+ ++  A          +    
Sbjct: 61  CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  101 bits (253), Expect = 7e-28
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
           +  +  +LK  GN   K  ++E A+ FY KA+++        A    NRAA Y K     
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYA 63

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
             ++DC +++ I P   KA  R   A  ++ K  EA    K    ++P N+  +
Sbjct: 64  GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK 117

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  100 bits (250), Expect = 4e-27
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           +KLK  GN+A  + +Y  A+D YT+AL +           L NRAA Y    Q++K  ED
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAED 67

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129
              +  + P   KA  R   A   +  ++ A    +     E    +    + R      
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA--MKRGLETTK 125

Query: 130 KRMQENEQ 137
           ++++E  +
Sbjct: 126 RKIEEANR 133

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  103 bits (259), Expect = 3e-26
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           +LK   N  FK  DYE A+ FY++A+    E +   A    NR+  YL+       + D 
Sbjct: 8   ELKTQANDYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130
           ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +        IV +
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123

Query: 131 RMQEN 135
           +  E 
Sbjct: 124 KAFER 128

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
           +RA  LK +A  Y K    +  I+  S+++E+ P +      R  AY     +  A  DA
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 105 KHIHRVEPTN 114
                ++   
Sbjct: 64  TRAIELDKKY 73

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 89.7 bits (223), Expect = 2e-23
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            K KE GN A+K+ D++TAL  Y KA ++         T + N+AAVY ++   +K  E 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCREL 60

Query: 70  CSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
           C K++E+  ++        KA  R   +Y    K+++A            T   +     
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----- 115

Query: 123 RLFAIVTKRMQENEQL 138
           +      K ++E E+L
Sbjct: 116 KKCQQAEKILKEQERL 131

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 89.3 bits (222), Expect = 3e-23
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +   +     K+ GN+A+KQ D+E A   Y KA+++         T   N+AAVY ++ +
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKK 57

Query: 63  NDKVIEDCSKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
             + ++ C K++E+  +         KA+ R   A++       A              +
Sbjct: 58  FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

Query: 116 AIQ 118
            ++
Sbjct: 118 LVK 120

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 27/120 (22%), Positives = 47/120 (39%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             +   NKL ES     + G Y  A   Y   +K     +       +     + K  + 
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
            + I  CS+ L++ PD+  AL  R +AY     ++EA  D +        ++ I+  L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +   +M D  K  E G      G    AL  +  A+    +           RA V+L  
Sbjct: 18  LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAM 73

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
            ++   + D +K +++  D   A  +R       GK +EA  D K + +  P+    +  
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133

Query: 121 LSRLFAI 127
            S+L   
Sbjct: 134 QSQLIKS 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             ++  +L+    +AF  GDY  A+ F  K L+V   +    A   + RA  ++K+ +  
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPR 194

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           K I D   + ++  D+ +A ++    Y  +G  E + ++ +   +++  +K       ++
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

Query: 125 FAIVTKRMQENEQLQNK 141
             +        E +++ 
Sbjct: 255 KKLNKLIESAEELIRDG 271

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 13/134 (9%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                K+G+   A+     A K+     ++        + +Y +   ++  + +  + L+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 76  IVPDDPKA------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           +  D  +             L    +     G++ +A +  + + + EP+          
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299

Query: 124 LFAIVTKRMQENEQ 137
                  + ++  +
Sbjct: 300 RICHCFSKDEKPVE 313

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   K      A+   ++ L++  E  +  A  LK+RA  YL +   D+ I+D   + E
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYETAQE 357

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
              +D +      +A   + + ++ 
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKR 382

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 85.4 bits (212), Expect = 5e-22
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 6   MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
           M+ + K KE GNS FKQG Y  A+  Y + +    +          N+A   +K  +  +
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQ 56

Query: 66  VIEDCSKSLEIVPDDPKALFRR------CQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            I+ C + L           R         A  A+G  +    +   +      +
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 26/115 (22%), Positives = 45/115 (39%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             +   NKL ES     + G Y  A   Y   +K     +       +     + K  + 
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            + I  CS+ L++ PD+  AL  R +AY     ++EA  D +        ++ I+
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 8   DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVI 67
           D  K  E G      G    AL  +  A+    +           RA V+L   ++   +
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAAL 57

Query: 68  EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127
            D +K + +  D   A  +R       GK +EA  D K + +  P+ +  +   S+L   
Sbjct: 58  PDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 128 VTKRMQEN 135
              +   +
Sbjct: 118 DEMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             ++  +L+     AF   DY  A+ F  K L+V   +    A   + RA  ++K+ +  
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPR 171

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
           K I D   + ++  D+ +A ++    Y  +G  E + ++ +   +++  +K       ++
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

Query: 125 FAIVTKRMQENE 136
             +        E
Sbjct: 232 KKLNKLIESAEE 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   K      A+   ++ L++  E  +  A  LK+RA  YL +   D+ I+D   + E
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQM--EPDNVNA--LKDRAEAYLIEEMYDEAIQDYEAAQE 334

Query: 76  IVPDDPKALFRRCQAYEAIGKFEE 99
              +D +      +A   + + ++
Sbjct: 335 HNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 12/134 (8%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                K+G+   A+     A     +   +        + +Y +   ++  + +  + L+
Sbjct: 161 AECFIKEGEPRKAISDLKAAS----KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216

Query: 76  IVPDDPKALFRRCQ------------AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
           +  D  +      Q                 G++ +A +  + + + EP+          
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276

Query: 124 LFAIVTKRMQENEQ 137
                  + ++  +
Sbjct: 277 RICHCFSKDEKPVE 290

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                LK+ GN  F+   Y+ A+ +Y  AL++      E      N +A Y+      KV
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKV 58

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSRLF 125
           +E  +K+LE+ PD  K L RR  A E +GKF +A  D   +    +  + +I+P+L R  
Sbjct: 59  VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118

Query: 126 A 126
            
Sbjct: 119 N 119

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                     L+ +G   F + D   A +   KA+++       R       A +   +N
Sbjct: 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRN 284

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
            + +      K+L++  ++    + R Q    +  +++A  D
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +   +N Y  +         + D     +++ KALK+ +      ++   +R  +     
Sbjct: 266 LFPRVNSYIYM---ALIMADRNDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQ 318

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             D+  +D  K+ E+ P++     +         KF++  T 
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   F   +Y+ A   + KA     E   E        A +  ++N+ D      S++  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAK----ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
             P+ P+      +       F++A
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKA 391

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQND--KVIEDC 70
                 + D++ AL  Y  A+++           A  +     +       +  +     
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVT 129
            K+ ++ P   +A     Q        +EA T  +    +  T +     ++    A V 
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498

Query: 130 KRMQENEQLQNKV 142
           +R++ +  L  K+
Sbjct: 499 QRIRSDPVLAKKI 511

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
              A+++  ++     +++A +   E            A +   +N  DK ++    ++E
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPE----APEVPNFFAEILTDKNDFDKALKQYDLAIE 400

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           +                         T    I       KA +
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 8/121 (6%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK---- 59
            +  +      S  S F     E     Y ++ +   E  +  +   K     Y K    
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211

Query: 60  ----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
                   ++ ++  ++  ++      +L               A+ D K    + P   
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271

Query: 116 A 116
           +
Sbjct: 272 S 272

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                    +LK  GN  F   ++  A+ +Y  A+++   E         N +A Y+   
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTG 73

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             +KVIE  +K+LEI PD  KAL RR  A E++G F +A  D
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                N    L  +G   F + +   A     +++ +     H         A     + 
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTLADKE 290

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            + +  +   K++++ P+ P   + R Q Y  +  ++ A
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +    N Y  L     +   + + +    F+ KA+ +  E          +R  +Y    
Sbjct: 272 LHPTPNSYIFL---ALTLADKENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQ 324

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 ED  K+  + P++     +        GKF E+
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 23  GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
           G +        +   ++  +    A  LKNR   +      ++ I+    ++E+ P++P 
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 83  ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                   Y + G  E+               KA++
Sbjct: 61  FYSNISACYISTGDLEKVIEFT---------TKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   F   DY+ A + + KA  +  E            A +  KQ +  +     +++  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKL 372

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
             P  P+      +     G F+ A        R+E   + I
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAAVYLKQNQN 63
                 +GD++TA+  Y  A ++                         ++    L + + 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           +  I+  +K+ E+ P   +A     Q    + K +EA
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 12/103 (11%), Positives = 24/103 (23%), Gaps = 4/103 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
               +KQG +  +  F+ +                   A +   +   D  I+    +  
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           +     K                   +        E  N AI+
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           + +    ++   E  +S     +Y+TA    + AL+     S      L     +    +
Sbjct: 167 LASFFGIFDSHLE-VSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTD 223

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
               ++   +    +  +   AL      +       +A    +    + PT  +
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +        +      +   +  +  A+   TKA ++               A + L+  
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQME 476

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + D+ IE    S  +     + L      +    K ++ 
Sbjct: 477 KIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                  GD E  ++F TKAL++      + +  L  RA+           + D S  L 
Sbjct: 66  SACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120

Query: 76  IVPD----DPKALFRRCQAYEAIGKFEEA 100
           +  D      + +  R    +A+    E 
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNEN 149

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              N     + +  G   F + D+  A+  YT+ +K   E+    A    NRAA   K  
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLM 187

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              + I DC+K++E  P+  +A  R+  A  A+ ++  A
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           +K K  GN  +K   ++ A++ Y KA      E H+  T L NRAA   ++ + +  I  
Sbjct: 6   DKEKAEGNKFYKARQFDEAIEHYNKAW-----ELHKDITYLNNRAAAEYEKGEYETAIST 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
            + ++E   +         +++  IG       D
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 16/117 (13%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                   ++     +   K  + E  L        V  E+    A   +     Y  ++
Sbjct: 101 YYQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYVNPEK----AEEARLEGKEYFTKS 153

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                ++  ++ ++  P+D +    R  A   +  F EA  D          NKAI+
Sbjct: 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC---------NKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +  ++   N       + +++G+YETA+     A+    E+  E     K  +  + +  
Sbjct: 34  LHKDITYLNNR---AAAEYEKGEYETAISTLNDAV----EQGREMRADYKVISKSFARIG 86

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
                + D  K++E          R       +   E+    
Sbjct: 87  NAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKK 127

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 4/83 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             +  K   +  A+    KA++   + +  RA     +A   +   +    +E    +  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEK--DPNFVRA--YIRKATAQIAVKEYASALETLDAART 235

Query: 76  IVPDDPKALFRRCQAYEAIGKFE 98
              +       R          +
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 47  ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           A   K     + K  Q D+ IE  +K+ E+   D   L  R  A    G++E A
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETA 57

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 67.8 bits (166), Expect = 6e-15
 Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +   + +   +L   G + ++ G ++ A   +           H  A       A     
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC----MLDHYDARYFLGLGACRQSL 65

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHRVEPTNKAI 117
              ++ ++  S    +  ++P+  F   + +  +G  + A   +  A+ +   +P ++A+
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 118 Q 118
            
Sbjct: 126 A 126

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 71.0 bits (173), Expect = 9e-15
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
           N +   KV  M    FD + P+DKR  A NNLVVLA+E +GAE+L K     ++ +L K 
Sbjct: 1   NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV 60

Query: 195 ETNEEIYLA 203
           E +++IY+ 
Sbjct: 61  EKDQDIYVN 69

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +  + +       + +G  E A  F+                 +   AA+Y  + Q  + 
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQA 89

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
            +  + +  +  +D   +F   Q    +    +A    + + +     K      S L A
Sbjct: 90  ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

Query: 127 I 127
           I
Sbjct: 150 I 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +  + + +         +  ++ A D Y  A  +         T + +     L+  
Sbjct: 63  CIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYTPVFHTGQCQLRLK 118

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91
              K  E     ++   D+   L  + Q+Y
Sbjct: 119 APLKAKECFELVIQHSNDEK--LKIKAQSY 146

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
               D+      G    K+G    A+  Y  A+                  + +  +   
Sbjct: 72  AKSADFEYY---GKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNF 124

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
              I+   K +     DPK  +   QAY    ++ +A + 
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
             ++ Y ++   G+  + +G++  A+ +  K ++ T  +              Y    + 
Sbjct: 106 TRLDMYGQI---GSYFYNKGNFPLAIQYMEKQIRPTTTD----PKVFYELGQAYYYNKEY 158

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
            K      K LE+ P+       R +A  A     +
Sbjct: 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
           N +   +     +  FK  +Y  A++ + K         +        RA  Y +  + D
Sbjct: 2   NDDVEFRY---ADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYD 54

Query: 65  KVIEDCS---KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +D       +              +     G+   A
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            +   + +L   G + +   +Y  A   + K L++              RA     Q+ +
Sbjct: 140 TDPKVFYEL---GQAYYYNKEYVKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPD 192

Query: 64  DKV---IEDCSKSLEIVPDDPK--------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
            K         K +E+              A       Y       +A    K+I  ++P
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

Query: 113 TNK 115
           TNK
Sbjct: 253 TNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 21  KQGDYETALDFYTKALKVTAEESHER----ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
                  A  +Y K ++V A    +         +  A  Y       K        L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 77  VPDDPKALFRRCQAYEAIGK 96
            P + KA+       E    
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
             A    K N   + IE  +K      + P    RR   Y  + K++ A  D       E
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI------E 61

Query: 112 PTNKAIQ 118
                + 
Sbjct: 62  TYFSKVN 68

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 5e-12
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
                ++   L    +  F+    + +  F T A+K     +   A    N   VY ++ 
Sbjct: 26  WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           Q  + IE    +L + PD          A  A G  E A
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 7e-11
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +  ++ GD+E A     +  +   +        L   ++++ +  + D+     + +++
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             P   +A       Y+  G+ +EA    +H  R++P  
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           Y  L    N+  ++G    A D Y  AL++        A  L N A +  +Q   ++ + 
Sbjct: 274 YCNL---ANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVR 326

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              K+LE+ P+   A        +  GK +EA
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           Y  L   GN   +   ++ A+  Y +AL ++       A    N A VY +Q   D  I+
Sbjct: 206 YINL---GNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAID 258

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +++E+ P  P A      A +  G   EA
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN   ++G  + A++ Y  AL++      +      N AA  +     +  ++    +L+
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
             PD            +A+G+ EEA
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEA 154

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            + L   GN     G  E A   Y KA++         A    N   V+  Q +    I 
Sbjct: 138 RSDL---GNLLKALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIH 190

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
              K++ + P+   A        +    F+ A         V    +A+ 
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRA---------VAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            N L    N   +QG+ E A+  Y KAL+V  E     A    N A+V  +Q +  + + 
Sbjct: 308 LNNL---ANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALM 360

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIG 95
              +++ I P    A        + + 
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 5/49 (10%), Positives = 13/49 (26%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
             A    +    +     C +     PD+   L      +    + + +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS 52

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 8e-12
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A  +T     E+   + +            +++    ++  
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLT----PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P+   A+       +A+   +         H + P  
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 9/108 (8%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +T E    +   + +             +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE----QVVAIASHDGGKQALETVQAL 159

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P+   A+       +A+   +         H + P  
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + +            +++    ++  
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHG 270

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P    A+       +A+   +         H + P  
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + +            +++    ++  
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P+   A+       +A+   +         H + P  
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 8/111 (7%), Positives = 27/111 (24%), Gaps = 4/111 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +G         +  L    +A  +T E+       + +            ++
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ----VVAIASHDGGKQALETVQRL 431

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           +    ++  + P    A+        A+       +           +  +
Sbjct: 432 LPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 9/99 (9%), Positives = 28/99 (28%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T ++       + + +          +++    ++  
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETVQRLLPVLCQAHG 304

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + P    A+       +A+   +         H + P  
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +G         +  L    +A  +T +    +   + +            ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNGGGKQALETVQRL 227

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 8/108 (7%), Positives = 28/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +          +  L    +A  +T ++       + +            ++
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRL 329

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 330 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 10/108 (9%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
               K+ + G     +  +          L +T E+       + +            ++
Sbjct: 36  GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQ----VVAIASHDGGKQALETVQRL 91

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 92  LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.5 bits (152), Expect = 9e-12
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           G  AF + D +TA++ +  AL +   T       A    N    Y K    D  I+  ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            L +  +D          Y        A
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLA 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           I+      + L    ++ F +  +   L   TK L+                 A   +  
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE----IDPYNLDVYPLHLASLHESG 353

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + +K+    +  ++  P+           Y  + K  EA
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +  L   G++  K   Y+ A+D   + L ++  +    A      A VYL +      I 
Sbjct: 519 WANL---GHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAIT 571

Query: 69  DCSKSLEIVPDDPKALFRRCQAYE 92
              +SL I P++  A     +A E
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +S   +G+++ A+  YT A ++   +              +++        E    S  
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARL--FQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           +   DP  L             + A
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTA 494

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 4/113 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +      L     +     D     + Y  ++        + +  L  +A     ++
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----NGLEKSSDLLLCKADTLFVRS 319

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +   V+   +K LEI P +         +    G+  + Y  +  +    P  
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 33/140 (23%)

Query: 16  GNSAFKQGDYETALDFYTKALKV-----------------TAEESHERATCLK------- 51
           G       +++ A + Y +AL V                 TA+E  +    L        
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 52  ---------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYT 102
                                 +  ED   S+  +      L  +        +F +   
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 103 DAKHIHRVEPTNKAIQPVLS 122
               I  ++P N  + P+  
Sbjct: 327 ITTKILEIDPYNLDVYPLHL 346

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 8/85 (9%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G           A  +++K+  +      +        A  +  + ++D+ I   + +  
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           +              +  +G    A
Sbjct: 436 LFQGTHLPYLFLGMQHMQLGNILLA 460

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N++ Y        S  + G+           +    +   E+A         YL  N+ 
Sbjct: 337 YNLDVYPLH---LASLHESGEKNKLYLISNDLV----DRHPEKAVTWLAVGIYYLCVNKI 389

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            +     SKS  + P    A      ++   G+ ++A
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 11/92 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    + G+   A ++   +  +   +       L     V   ++     I     +L 
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----PLLLNELGVVAFNKSDMQTAINHFQNALL 503

Query: 76  IV-------PDDPKALFRRCQAYEAIGKFEEA 100
           +V                   AY  +  ++ A
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 8   DYNKLKESGNSAFKQGDYETALDFYTKALKV------------TAEESHERATCLKNRAA 55
             +++ +  ++A + G    A+ ++ + + +              + S   +      A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 56  VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            Y K    DK      + L+  P++   L    +     G+ ++A    + I ++E  N
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRA-AVYLKQNQ 62
           NN++              +G  + AL  Y K L++ A+                YL   Q
Sbjct: 86  NNVDCLEAC---AEMQVCRGQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQ 138

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
             K +E   K L        A +R   +     ++E+A    + +    P+ +A
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           +  N+        E   +  K  +Y+ A  FY + L    +++     CL+  A + + +
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL----QKAPNNVDCLEACAEMQVCR 101

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            Q    +    K L++  D+  A       Y    + E+ 
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
            N L   G+   K   Y  ALD++ +AL +  +     A+       ++      +  ++
Sbjct: 239 LNNL---GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMGNFENAVD 291

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
               +L +  DD  ++       E      EAY  A
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER-----ATCLKNRAAVYLKQNQNDKVIEDC 70
           G  AF+ G+++TA  ++  AL+      +E         L N   V  K  +  + ++  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
            ++L ++P +          +  +G FE A
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENA 289

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G+S   + +++ A+  Y  A ++           +      Y   N +       S++L 
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGLTNNSKLAERFFSQALS 187

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P+DP  +          G+++ A
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTA 212

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +D    + + +       +   D++      +  +    E+    A+CL       ++ N
Sbjct: 15  VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM----EKDPFHASCLPVHIGTLVELN 70

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEA 100
           + +++     K +++ P +P + F     Y  +G   E A
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 16  GNSAFKQG-DYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           G      G   E A  + +KA  +  T   +             +  ++++D+ +     
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAW------IAYGHSFAVESEHDQAMAAYFT 150

Query: 73  SLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + +++      +      Y      + A
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLA 178

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G  A  + D++ ALD ++      +           N   +Y       +  +  ++S+ 
Sbjct: 13  GVLAADKKDWKGALDAFSAVQDPHSR-------ICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
                  A F+R   Y    K++ A  D K        N+ I
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 28/122 (22%)

Query: 6   MNDYNKLKES--------GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY 57
           ++ ++ +++         G       +   A   +T+++          A     R  +Y
Sbjct: 26  LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLY 81

Query: 58  LKQNQNDKVIEDCSKSLEIVPDDP----------------KALFRRCQAYEAIGKFEEAY 101
            +  + D  I+D  ++L  +  +                 + L+     Y    ++++A 
Sbjct: 82  YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

Query: 102 TD 103
             
Sbjct: 142 EQ 143

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 16  GNSAFKQGDYETALDFYTKALKV----TAEESHERATCLK--------NRAAVYLKQNQN 63
           G   ++   Y+ A+    +AL         +        K        N A +Y K+ + 
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96
            K  E  + +  +  +   +   +  A E + K
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDK--AMECVWK 168

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           M+D N  +Y      G   +  G+Y  ++D + KA+++  EE    +     +       
Sbjct: 1   MVDQNPEEYYLE---GVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNL 53

Query: 61  NQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
            + ++ ++  +  + ++ D  +      +  A   I   E  
Sbjct: 54  ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
             K    G + +    YE A+D Y   + V  +E ++       +A         +   E
Sbjct: 44  LMK----GKALYNLERYEEAVDCYNYVINVIEDEYNKDV--WAAKADALRYIEGKEVEAE 97

Query: 69  DCSKSLEIVPDD 80
                 ++    
Sbjct: 98  IAEARAKLEHHH 109

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.0 bits (140), Expect = 4e-11
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 8/134 (5%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +   +L     + ++ G YE A   +           H  +       A      Q D  
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALC----VLDHYDSRFFLGLGACRQAMGQYDLA 74

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR--- 123
           I   S    +   +P+  F   +     G+  EA +       +         + +R   
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 124 -LFAIVTKRMQENE 136
            L AI  K+  ++E
Sbjct: 135 MLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
              +  D       G      G Y+ A+  Y+    +   E         + A   L+  
Sbjct: 48  CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXG 103

Query: 62  QNDKVIEDCSKSLEIVPDDPKA--LFRRCQAYEAIGKFEEAYTD 103
           +  +       + E++ + P+   L  R  +     K ++    
Sbjct: 104 ELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 7/92 (7%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 23  GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82
           G   +         +++++   +    L + A    +    +           +   D +
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQ----LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56

Query: 83  ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
                    +A+G+++ A     +   ++   
Sbjct: 57  FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            ++    GD         + L +           +     V   Q ++ +      ++ +
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPG----HPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             P+ P        A E  G+ E A       H++ P  
Sbjct: 86  AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
             D    L     A++   ++           A   L             + L + P  P
Sbjct: 2   TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +A+ R  +      +  EA    +      P +
Sbjct: 58  EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   + Q  +  A     +A     E                    Q +      +++ +
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI-HRVEPTNKAIQP 119
           ++P++P    +       +  +      +  +   V     A++P
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            +   +QG  + AL  Y +A++++       A    N      +       ++  +++++
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           I P    A       ++  G   EA    +   +++P
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            N   +QG+ E A+  Y KAL+V      E A    N A+V  +Q +  + +    +++ 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           I P    A        + +   + A        ++ P  
Sbjct: 72  ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+  +  D + AL  YT+A+++        A    N A+++       + I     +L+
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

Query: 76  IVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHI---HRVEPTNKAIQPVLSRLF 125
           + PD P A        + +  +   +E       I      +    ++ P  S L+
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 7/108 (6%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +T     ++   + +            ++
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRL 686

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  +  +   A+       +A+   +         H + P  
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +             +  L    +A  +      ++   + +            ++
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLP----PDQVVAIASNIGGKQALETVQRL 279

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
                +  +          +  L    +A  +T      +   + +            ++
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLT----PAQVVAIASHDGGKQALETMQRL 245

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +   G         +  L    +A  +T     ++   + +            ++
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRL 347

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 8/99 (8%), Positives = 26/99 (26%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G         +  L    +A  +T     ++   + +            +++    ++  
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +      A+       +A+   +         H + P  
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 7/99 (7%), Positives = 24/99 (24%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A       +  +   + +            +++    ++  
Sbjct: 606 IGGKQALETVQRLLPVLCQAH----GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + PD   A+       +A+   +         H +    
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +  +G         +  L    +A  +T     E+   + +            ++
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QEQVVAIASNNGGKQALETVQRL 720

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 721 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +  +G         +  L    +A  +T      +   + +            ++
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----QVQVVAIASNIGGKQALETVQRL 618

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + P    A+       +A+   +         H + P  
Sbjct: 619 LPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 9/108 (8%), Positives = 29/108 (26%), Gaps = 5/108 (4%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
           +    +             +  L    +A  +T ++       + +            ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQRL 381

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +    ++  + PD   A+       +A+   +         H + P  
Sbjct: 382 LPVLCQAHGLTPDQVVAIASN-GGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                     +  L    +A  +T     ++   + +            +++    ++  
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLT----PDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           + PD   A+       +A+   +         H + P  
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 8/110 (7%), Positives = 29/110 (26%), Gaps = 4/110 (3%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             +    +  +          +  L    +A  +T ++       + +            
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQALETVQ 548

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +++    ++  + PD   A+       +A+   +         H +    
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 10/110 (9%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 5   NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND 64
             +    +  +G         +  L    +A  +T ++       + +            
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGKQ-ALETVQ 412

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +++    ++  + PD   A+       +A+   +         H + P  
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 8/93 (8%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
               +  L    +A  +T     ++   + +            +++    ++  + P   
Sbjct: 408 LETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            A+       +A+   ++        H + P  
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 8/94 (8%), Positives = 24/94 (25%), Gaps = 1/94 (1%)

Query: 22  QGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
                 A+     AL       +  +   + +            +++    ++  + P  
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             A+       +A+   +         H + P  
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/97 (22%), Positives = 30/97 (30%)

Query: 7   NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
             + K +            E  L    + L   A    ERA  L  R  +Y         
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 67  IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
             D S++L I PD P+            G F+ AY  
Sbjct: 63  RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G    A + +++AL +      +             +    D   E     LE
Sbjct: 50  GVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTD 103
           + P    A   R  A    G+ + A  D
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDD 133

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 4/103 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D     +N ++    +  +Q   E      T    +    +   +         YL    
Sbjct: 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGD 230

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAK 105
            D        ++     +             +G+ ++   ++ 
Sbjct: 231 LDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +N L   G    + G+++ A + +   L++             NR        ++    +
Sbjct: 80  FNYL---GIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD 132

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
           D     +  P+DP        A + + + +      +H 
Sbjct: 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
            G    A+ +Y KA+    +   + A C     + +    +  K     +  ++  P+  
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                       +G++E+       I      ++ IQ
Sbjct: 62  ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    K GD    + F+  A++V  E+    +         Y   +   K +E     L 
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     KA        + +G F+EA
Sbjct: 76  LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSK 72
           GN+    G++ETA ++Y K L + A +  +R   A    +    Y      +K I+   K
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

Query: 73  SLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
            L I         + +A +    AY A+G  ++A
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           +  L   GN+ +  G++  A+  + + L + A+E  ++        N    Y+   + + 
Sbjct: 190 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFET 245

Query: 66  VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
             E   K+L +   + D     ++ +     Y  +  +E+A
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y++L   GN+ F   DY  AL+++   L +  T  +    A    N           D+ 
Sbjct: 50  YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

Query: 67  IEDCSKSLEI 76
           I  C + L+I
Sbjct: 107 IVCCQRHLDI 116

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E ++R        +    Y     +D+
Sbjct: 270 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELNDRIGEGRACWSLGNAYTALGNHDQ 325

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 326 AMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 13/118 (11%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
            +                +   + A+DFY + L +      +R        N    +   
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 200

Query: 61  NQNDKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                 +    + L I     D     +A      AY  +G+FE A   Y     + R
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+    G+++ A+    + L + + E +++   A  L N   VY    +   
Sbjct: 90  SGNL---GNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVY--HAKGKS 143

Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 + +   P++ +   +      A+  +EE 
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQ-----AAVDFYEEN 173

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 12/106 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
           G      G+++ A   + +  ++     E+    +      A V L         ++  K
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 73  SLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
           SL       D      A        +      EA   +  A+ I  
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 12/106 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           G        ++ A   +    +   +          L     V       D       + 
Sbjct: 33  GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92

Query: 74  LEI---VPDDPKALFRRC----QAYEAIGKFEEA---YTDAKHIHR 109
            E+   +P+DP A               G    A   Y  +    +
Sbjct: 93  RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQ 62
           G+ A ++ +   A   + +A  + AE  +S      +     +    + 
Sbjct: 154 GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 19/146 (13%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHE--------RATCLKNRAAVYLKQN 61
                        G+Y+ A     +A++++     E         A C    A       
Sbjct: 12  YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 71

Query: 62  QNDKVIEDCSKSL-------EIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110
             D+ +    K+L       E+  D+      A++ R  A + +G+  EA  + K +  +
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131

Query: 111 EPTNKAIQPVLSRLFAIVTKRMQENE 136
               K   P   R+  +   R+ +  
Sbjct: 132 IEERKGETPGKERMMEVAIDRIAQLG 157

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 3   DNNMNDYNKLKES-GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
               +  +           + GDYE A + +TKA+    EE+ E A    N A +    N
Sbjct: 16  PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVN 71

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           + ++ +    K+LE+      A +     Y     ++EA
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
            N      + E AL FY KAL++ +      AT       VY+ +    +  +   K+L 
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
              ++    +        + + + A
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLA 144

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    K    + AL +  +A+++    +                +   D+ +   +   E
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
             P    A +     Y      E+A
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKA 212

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G    K GD    + F+  A++V  E+    +         Y   +   K +E     L 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     KA        + +G F+EA
Sbjct: 72  LARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKV 66
           +  L   GN+ +  G++  A+  + + L +  E  +         N    Y+   + +  
Sbjct: 186 FGNL---GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242

Query: 67  IEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
            E   K+L +         + ++ +     Y  +  +E+A
Sbjct: 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y++L   GN+ F   DY  AL+++   L +  T  +    A    N           D+ 
Sbjct: 46  YSQL---GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

Query: 67  IEDCSKSLEI 76
           I  C + L+I
Sbjct: 103 IVCCQRHLDI 112

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E  +R        +    Y     +D+
Sbjct: 266 CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 321

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 322 AMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 13/118 (11%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQ 60
            +                +   + A+D Y + L +      +R        N    +   
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL-VTALGDRAAQGRAFGNLGNTHYLL 196

Query: 61  NQNDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                 +    + L I         + +A      AY  +G+FE A   Y     + R
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+    G+++ A+    + L + + E +++   A  L N   VY    +   
Sbjct: 86  SGNL---GNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVY--HAKGKS 139

Query: 66  VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 +     P+D +   +      A+  +EE 
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQ-----AAVDLYEEN 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D     Y      G S  K G Y  A+    +                 +    Y+K   
Sbjct: 5   DIRQVYYRDK---GISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGA 57

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            D+  E   +SL   PD+ K        Y  + K++ A         V    K  +
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLA---------VPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G +  +   Y+ A+    K  +                        + D+ I+    +L 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALG 138

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P++ K       +YE +G+ EEA
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEA 163

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            +N   D+    E G    K+GD    + F   A+    +     A   +       +  
Sbjct: 58  TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA--WQFLGITQAENE 113

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
                I    + LE+ P++ KAL     +Y      ++A   
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 12/111 (10%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +  L   G +  +  + + A+    + L++           L   A  Y   +      E
Sbjct: 102 WQFL---GITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACE 154

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQ 118
                ++  P     +  +  +     +  ++  D+  +  V+    +A  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G++  A+D +  AL V  E+     +      A     +++++ +E  +++LE
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P   ++ +    +   +G + EA
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREA 300

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
           N        +    S       E   + Y +A     +              ++    + 
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--MIDPDLQTGLGVLFHLSGEF 229

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           ++ I+  + +L + P+D     R         + EEA
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 3   DNNMNDYNKL-KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           D    ++ ++ + +  S  ++   +  +    K      E   +            LK+ 
Sbjct: 20  DKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEG 79

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                I     ++   P D +A              + A
Sbjct: 80  DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.8 bits (125), Expect = 7e-09
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           Y+ L   GN+    G++ETA ++Y K L + A +  +R   A    +    Y      +K
Sbjct: 52  YSNL---GNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107

Query: 66  VIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEA 100
            I+   K L I         + +A +    AY A+G  ++A
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9  YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
          +  L   GN+ +  G++  A+  + + L + A+E  ++        N    Y+   + + 
Sbjct: 12 FGNL---GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERIAYSNLGNAYIFLGEFET 67

Query: 66 VIEDCSKSLEI 76
            E   K+L +
Sbjct: 68 ASEYYKKTLLL 78

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     DYE A+D++ K L + A+E  +R        +    Y     +D+
Sbjct: 92  CYSL---GNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQ 147

Query: 66  VIEDCSKSLEI 76
            +    K LEI
Sbjct: 148 AMHFAEKHLEI 158

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      GD    + F+  A++   E+    +         Y      +K ++     L 
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114

Query: 76  I---VPDDP---KALFRRCQAYEAIGKFEEA 100
           +   + D     K+        + +G+F+EA
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 16/113 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+ +  GD++ A++ + + L++ A E  +R        N    ++   Q + 
Sbjct: 226 CGNL---GNTYYLLGDFQAAIEHHQERLRI-AREFGDRAAERRANSNLGNSHIFLGQFED 281

Query: 66  VIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
             E   ++L +   + +     ++ +     Y  + +F  A   +     I +
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
           Y++L   GN+ F  GDY  A+ ++   L + A+  ++R   A    N         + D+
Sbjct: 89  YSQL---GNAYFYLGDYNKAMQYHKHDLTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144

Query: 66  VIEDCSKSLEI 76
               C + L +
Sbjct: 145 AAICCERHLTL 155

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+     ++ TA++++ + L + A+E  +R   A    +    +     +++
Sbjct: 306 CYSL---GNTYTLLHEFNTAIEYHNRHLAI-AQELGDRIGEARACWSLGNAHSAIGGHER 361

Query: 66  VIEDCSKSLEI 76
            ++   + L++
Sbjct: 362 ALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 15  SGNSAFKQGDYETALDFYTKALKVTAEESHERATC--LKNRAAVYLKQNQNDKVIEDCSK 72
              S+   G      + +    +  +      + C  L                +     
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 73  SLEIVPDDPK----ALFRRCQAYEAIGKFEEA 100
           +++   +D +       +   AY  +G + +A
Sbjct: 74  AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDK 65
              L   GN+    G ++ A     + L + A +  +R      L N   VY  + ++  
Sbjct: 129 SGNL---GNTLKVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLG 184

Query: 66  VIEDCSKSLEIVPDDPKAL 84
                    ++     +A+
Sbjct: 185 QRNPGKFGDDVKEALTRAV 203

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 4   NNMNDYNKLKESGNSAFK-QGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLK 59
           +    +   +  G      +     A++FY + LK+   +  +R        N    Y  
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYL 235

Query: 60  QNQNDKVIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEA---YTDAKHIHR 109
                  IE   + L I         + +A      ++  +G+FE+A   Y     +  
Sbjct: 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 31/128 (24%)

Query: 4   NNM-NDYNKL-KESGNSAFKQGDYETALDFYTKALKV----------------------T 39
             +   Y  L +++ +    +G  E AL     A +V                       
Sbjct: 77  MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136

Query: 40  AEESHERATCLK-------NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYE 92
           AE S ++A  L+         A +YL   + D+ +   +K+LE  P D     R   A  
Sbjct: 137 AEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196

Query: 93  AIGKFEEA 100
             GK EEA
Sbjct: 197 LKGKAEEA 204

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   +  G Y+ AL  + +ALK   ++       L   A   LK    +  +E+    + 
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 76  IVPDDPKALFRRCQAYEAI-----------GKFEEA 100
             P          +AY A+           G  E+A
Sbjct: 68  RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 7/92 (7%)

Query: 16  GNSAFKQGDYETALDFYTKALKVT---AEESHERATCLK----NRAAVYLKQNQNDKVIE 68
             +  K G    AL+     +  T          +                +   ++ + 
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
               +  + P       +R   Y  +G+ ++A
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
                     + D  +    ++L+  P DP+AL+   +    +G    A         +E
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA---------LE 60

Query: 112 PTNKAIQ 118
                + 
Sbjct: 61  NGKTLVA 67

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G   ++Q  YE A     +A + T      R    +N   V L+  +  +  E   KSL 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLR 169

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
           +  + P              ++  A        +    N
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 10/100 (10%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G  + +      A +++ K+L++    +  + +     A +  K+ +     +      +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRL----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
               + ++L    +  +     + A +    + R+ P + 
Sbjct: 204 GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           G    ++G+ E A     KAL++     ++H         A V+  + +     E+  K+
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHA------ALAVVFQTEMEPKLADEEYRKA 97

Query: 74  LEIVPDDPKALFRRCQAYEAIGKFEEA 100
           L     + + L           ++EEA
Sbjct: 98  LASDSRNARVLNNYGGFLYEQKRYEEA 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           +S               K  K   E               YL++   ++      K+LEI
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYI----QLGLGYLQRGNTEQAKVPLRKALEI 66

Query: 77  VPDDPKALFRRCQAYEAIGKFEEA 100
            P    A       ++   + + A
Sbjct: 67  DPSSADAHAALAVVFQTEMEPKLA 90

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N + D+ +  E G    ++GD   A+  +  A++    +  +     +       +  Q
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQ 113

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
               I    + LE+ PD+  AL     ++       +A   
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             S      +    + +  A+++                 ++    + DK ++  + +L 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPT--SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P+D     +         + EEA
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G      G+Y+ A+D +T AL V   +            A     NQ+++ +    ++LE
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALE 279

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + P   ++ +    +   +G   EA
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREA 304

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 16  GNSAFKQGDYETALDFYTKALKV-----------TAEESHERATCLKNRAAVYLKQNQND 64
             S   +     A +     L+                        K      L  +   
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 65  KVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEA 100
           +V E    ++ + P   DP         +   G++++A
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 2/100 (2%)

Query: 3   DNNMNDYNKLKESGNSAFK-QGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
           D    +  ++ +    A     DY +     Y K  +   E                L++
Sbjct: 18  DKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE 77

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
                 +     +++  P   +A            +   A
Sbjct: 78  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +NKL   G +       E A+  Y +AL++  +  + R+    N     +    + + +E
Sbjct: 254 WNKL---GATLANGNQSEEAVAAYRRALEL--QPGYIRS--RYNLGISCINLGAHREAVE 306

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAI-----------GKFEEA 100
              ++L +               E I           G+ +  
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 8/110 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +  L   G +  +      A+    + L++      +  T L   A  +  ++   +  E
Sbjct: 101 WQYL---GTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACE 153

Query: 69  DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
                L   P     +    +     G    +      +       +  +
Sbjct: 154 ILRDWLRYTPAYAHLVTPAEEGAGGAG-LGPSKRILGSLLSDSLFLEVKE 202

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 4/102 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            +N    +    E G S  K  +   A   +    +       E A   ++      +  
Sbjct: 14  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEA--WRSLGLTQAENE 69

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
           ++   I   + +  + P D         ++        A   
Sbjct: 70  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALK-----------VTAEESHERATCLKNRAAVYLKQNQND 64
             S   + +   AL      L                +       +++    +   N+  
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 65  KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           +       +LE+ P+D +        Y     ++ A
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           G       +Y++A     +A+++  ++    A       A     N+  + ++  +++L+
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGATLANGNRPQEALDAYNRALD 234

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           I P   + ++    +Y  + +++ A
Sbjct: 235 INPGYVRVMYNMAVSYSNMSQYDLA 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
                   +Y         AL++   +    A    +   +Y   N  D    +  +++E
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLYNLSNNYDSAAANLRRAVE 200

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEA 100
           + PDD +   +         + +EA
Sbjct: 201 LRPDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68
           +NKL   G +       + ALD Y +AL +     + R   + N A  Y   +Q D   +
Sbjct: 209 WNKL---GATLANGNRPQEALDAYNRALDI--NPGYVRV--MYNMAVSYSNMSQYDLAAK 261

Query: 69  DCSKSLEIVPDDPKALFRRCQ------------AYEAIGKFEEA 100
              +++ +            +                + + +  
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQ 60
           +  L   GN+ +KQGDY+ A+++Y KAL+            L         N    Y KQ
Sbjct: 4   WYNL---GNAYYKQGDYDEAIEYYQKALE------------LDPRSAEAWYNLGNAYYKQ 48

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              D+ IE   K+LE+ P   +A +    AY   G ++EA
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           GN+ +KQGDY+ A+++Y KAL++        A    N    Y KQ   D+ IE   K+LE
Sbjct: 76  GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

Query: 76  IVPD 79
           + P 
Sbjct: 132 LDPR 135

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 20/93 (21%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQNQNDKVI 67
           GN+ +KQGDY+ A+++Y KAL+            L         N    Y KQ   D+ I
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 68  EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           E   K+LE+ P++ +A +    AY   G ++EA
Sbjct: 64  EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 21  KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
           +      ++ ++ KAL      +   A    N+     KQ Q         +SL   P  
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
           P A     +     G+  +A    K         +A
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
                +  DY  A      ALK   +   +         RA +Y     NDK  E   ++
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWL------VRAEIYQYLKVNDKAQESFRQA 68

Query: 74  LEIVPDDPKALFRRCQA-YEAIGKFEEA 100
           L I PD  +            + +  E+
Sbjct: 69  LSIKPDSAEINNNYGWFLCGRLNRPAES 96

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 40  AEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99
           AE++++ +      A  Y++     +       +L+  P +  A   R + Y+ +   ++
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 100 A 100
           A
Sbjct: 61  A 61

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
             +      Y+ AL     AL++  +  ++R  A  L N A  Y +   +   +E   K+
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 74  LEIVPDD-----PKALFRRCQAYEAIGKFEEA 100
            ++  +      PK LF         G+ ++A
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
             +  Y  L   G   F Q +Y  A+ +Y +A K      +  E+A      A  Y    
Sbjct: 96  TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQ-------AYEAIGKFEEA 100
           Q    +    ++L+I  + P    R  Q        Y+    +++A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER-ATCLKNRAAVYLKQNQNDKVIEDCSKSL 74
            NS  + GD + A++ + KA KV+ E+  +     L   +    K  Q  K  +   + L
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 75  EIVPD-DPKALFRRCQAYEAIGKFEEAYTDAK 105
           + +     K         +A+ K         
Sbjct: 289 DHITARSHKFYKELFLFLQAVYKETVDERKIH 320

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
             +      YE A+  + KA  +   E   +     L N       Q+Q +  I    ++
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 74  LEI------VPDDPKALFRRCQAYEAIGKFEEA 100
           + +      +P  P+A F   Q +  +GK ++A
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQN 61
             + +Y      G     Q +Y +A+ F+ KA       ++  E+A      +  Y    
Sbjct: 98  TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK 157

Query: 62  QNDKVIEDCSKSLEIVP--DDPKALFRRCQ-----AYEAIGKFEEA 100
           Q    ++   ++ EI    +       +C       +  + ++E+A
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           G     Q  YE A+ ++ +A+ V  E +              ++ K  + DK  E  SK 
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 74  LEIVPDDP-----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
           +                  K+L+      EAI  F +          +E
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
               +K G  + A ++++K +  + +                     +++ I+     LE
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330

Query: 76  IV---PDDPKALFRRCQAYEAIGKFEEAY 101
                 D         + Y     F++A 
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKAS 359

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 4/110 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N    +    E G S  K  +   A   +    +   E    R    ++      +  +
Sbjct: 11  NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEK 66

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           +   I   + +  + P D         ++        A    +     +P
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           N+       + AL  Y +A KV  + S        NRA ++  +    + +E  S++  +
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKYEESYGEALEGFSQAAAL 287

Query: 77  VPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107
            P  P+   R  Q  E + +           
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD 80
           Q + E  L    + L      +   A  L  +     +  + + +     SK++++ P+ 
Sbjct: 81  QEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            +A  +  + Y   G    A+T             ++Q
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 16  GNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKN--RAAVYLKQNQNDKVIEDCS 71
           G   +K+GD  +A   ++ AL            +  L+     +           +    
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 72  KSLEIVPDDPKALFRRCQAYEA-----------IGKFEEAYTDAKHIHRVEPTN 114
            ++++   D ++ +    AY +             +   AY  A+ + R   +N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 14  ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
           ++      QGD E AL    + L+       E           Y K     K + +   +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKALNNYQSA 61

Query: 74  LEIVPDDPKALFRRCQAYEAIGKFEEAY 101
           +E+ PD P       QA + +      Y
Sbjct: 62  IELNPDSPAL-----QARKMVMDILNFY 84

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHER--ATCLKNRAAVYLKQNQNDKVIE 68
              +      +  D   A+  Y +A  V   E   R  A  +   + + ++Q + D+   
Sbjct: 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176

Query: 69  DCSKSLEIVPDDP------KALFRRCQAYEAIGKFEEA 100
              K   +  +        K    +         +  A
Sbjct: 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 11/103 (10%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKV 66
             K         +Q  ++ A     K   +  E             +  V L +      
Sbjct: 158 IGKA---SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214

Query: 67  IEDCSKSLEIV----PDDPKALFRRCQAYEA--IGKFEEAYTD 103
            +   +S  I      +D  AL    QAY+     +       
Sbjct: 215 QKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 5/70 (7%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKV 66
           Y K      +       E A D Y +  +           A   +    +     +  + 
Sbjct: 39  YAKA---AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 67  IEDCSKSLEI 76
           ++   K+  +
Sbjct: 96  VQYIEKASVM 105

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N   +  L   G     Q DY  +L  Y +AL++   E+ E    L         Q+  
Sbjct: 42  QNSEQWALL---GEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMT 97

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123
            +      K+L +  ++  AL            + +A    + +  +             
Sbjct: 98  AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR---INRTQL 154

Query: 124 LFAIVTKRMQENEQLQNKVHN 144
           + +I   ++ +        H+
Sbjct: 155 VESINMAKLLQRRSDLEHHHH 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 31/113 (27%)

Query: 35  ALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIVPDDPKALFRRCQAY 91
            L + AE   +             K    DK   +IE     LE  P + + +F R    
Sbjct: 329 RLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRL--- 378

Query: 92  EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144
            ++  F      A  I    PT      +LS ++  V K   +   + NK+H 
Sbjct: 379 -SV--FPP---SAH-I----PTI-----LLSLIWFDVIK--SDVMVVVNKLHK 413

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 13/114 (11%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT---AEESHERATCLKNRAAVYL 58
           ++      + L+ +     ++ + + A++   KAL+     A    +   C + +    +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299

Query: 59  KQNQN------------DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
              +N               +    K+ E   +  +        +    ++EEA
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 14/111 (12%), Positives = 36/111 (32%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN 63
            N    + L  +          + A+D   +A+++  +  + +         +  +  + 
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229

Query: 64  DKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            +  +   ++LE  P     L    + Y    + ++A    K      P N
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 21  KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80
           +  +         +AL+            L++ A  Y ++++ DK IE   K+LE +P++
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

Query: 81  PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111
                +    Y A         +     + +
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           K+G Y+ A     +AL++  +   + H + A  L N A +   Q + ++V     ++LEI
Sbjct: 97  KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Query: 77  V-----PDDPKALFRRC---QAYEAIGKFEEA 100
                 PDDP     +      Y   GK+++A
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 11/91 (12%)

Query: 21  KQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
           KQG Y+ A   Y + L    E      + +      +       +++             
Sbjct: 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240

Query: 76  IV---PDDP---KALFRRCQAYEAIGKFEEA 100
                 D P     L      Y   GK E A
Sbjct: 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 16  GNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
                 +     +  +       K    +S    T L++  A+Y +Q + +        +
Sbjct: 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278

Query: 74  LEI 76
              
Sbjct: 279 SRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKAL----KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
            Q  Y+ A      AL    K   ++    A  L N A +Y K+ +  +    C ++LEI
Sbjct: 55  DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114

Query: 77  V-----PDDP---KALFRRCQAYEAIGKFEEA 100
                    P   K L       +  GK EE 
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
            QG  E    +Y +AL++ A          A    N A+ YLKQ +         + L  
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

Query: 77  V---------PDDPKALFRRCQAYEAIGKFEEA 100
                      D+        +  E+  K  ++
Sbjct: 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
            + +       +A+    +AL+   +     H + AT L   A VY  QN+  +     +
Sbjct: 8   HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67

Query: 72  KSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
            +L I       D P            Y   GK++EA
Sbjct: 68  DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 21  KQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           K+G Y+ A     +AL++  +   + H + A  L N A +   Q + ++V     ++LEI
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

Query: 77  V-----PDDP---KALFRRCQAYEAIGKFEEA 100
                 PDDP   K        Y   GKF++A
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 22  QGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77
           QG YE    +Y +AL++            A    N A+ YLKQ +  +      + L   
Sbjct: 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225

Query: 78  ------PDDP---KALFRRCQAYEAIGKFEEA 100
                   D           +  E  GK ++ 
Sbjct: 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDG 257

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 19/103 (18%), Positives = 26/103 (25%), Gaps = 14/103 (13%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE----ESH-ERATCLKNRAAVYLKQNQN 63
            N L    +   KQG ++ A   Y + L    E        E      +       + + 
Sbjct: 198 KNNL---ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254

Query: 64  DKVIEDCSKSLEI---VPDDP---KALFRRCQAYEAIGKFEEA 100
                             D P     L      Y   GKFE A
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 9   YNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQND 64
            + L         QG YE A+    +AL+   +     H + AT L   A VY  QN+  
Sbjct: 30  LHNL---VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 65  KVIEDCSKSLEIV-----PDDPKALFRRC---QAYEAIGKFEEA 100
                 + +L I       D P            Y   GK++EA
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAE---ESH-ERATCLKNRAAVYLKQNQNDKVIEDCS 71
                 Q  Y+ A +    AL +  +   + H   A  L N A +Y K+ +  +    C 
Sbjct: 76  ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135

Query: 72  KSLEIV-----PDDP---KALFRRCQAYEAIGKFEEA 100
           ++LEI       D P   K L       +  GK+EE 
Sbjct: 136 RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 16  GNSAFKQGDYETALDFYTKAL--KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73
                 +G  +    F       K    +S    T LKN  A+Y +Q + +        +
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304

Query: 74  LEI 76
           +  
Sbjct: 305 MRS 307

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 4/75 (5%)

Query: 26  ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85
           +   +     L     +  +           Y +  Q D  +     +L+  P    A  
Sbjct: 2   QAITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57

Query: 86  RRCQAYEAIGKFEEA 100
              +  +  G    A
Sbjct: 58  WLGKTLQGQGDRAGA 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 4   NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQN 61
            +      L        K  +   AL  + + ++   +   ++       +   +Y + +
Sbjct: 5   EDPFTRYAL---AQEHLKHDNASRALALFEELVETDPDYVGTY------YHLGKLYERLD 55

Query: 62  QNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAY 101
           + D  I+  ++ +E+  +    K L     A       E  +
Sbjct: 56  RTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 17  NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76
           + A      + A   + +      ++       L  +AA ++ Q + +       ++L+ 
Sbjct: 174 SLAAGGEKLQDAYYIFQEMA----DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229

Query: 77  VPDDPKALFRRCQAYEAIGKFEEA 100
               P+ L       + +GK  E 
Sbjct: 230 DSGHPETLINLVVLSQHLGKPPEV 253

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 23/83 (27%)

Query: 9  YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLK--------NRAAVYLKQ 60
          +  L   GN+ +KQGDY+ A+++Y KAL+            L         N    Y KQ
Sbjct: 12 WYNL---GNAYYKQGDYDEAIEYYQKALE------------LDPNNAEAWYNLGNAYYKQ 56

Query: 61 NQNDKVIEDCSKSLEIVPDDPKA 83
             D+ IE   K+LE+ P++ +A
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           N    Y KQ   D+ IE   K+LE+ P++ +A +    AY   G ++EA
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 22  QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81
           Q D    +++ T  +    EE  +      +R  +        + +E  +  L     + 
Sbjct: 145 QKDLHEEMNYITAII----EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200

Query: 82  KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
            A   R    +    ++        + + +  N
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.86
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.85
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.85
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.82
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.79
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.76
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.75
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.74
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.73
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.69
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.69
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.67
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.67
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.65
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.63
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.56
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.52
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.47
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.46
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.41
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.39
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.35
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.29
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.26
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.18
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.16
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.11
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.95
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.8
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.79
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.75
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.29
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.26
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.2
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.12
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.34
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.26
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.2
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.06
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.7
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.63
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.52
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.5
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.23
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.22
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.79
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.57
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.06
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.79
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.69
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.39
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.53
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.18
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.54
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	89.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.98
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.99
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.58
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.53
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	85.32
2d2s_A	235	Exocyst complex component EXO84; tethering complex	85.17
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.89
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.28
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.95
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.66
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	82.38
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.4
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.96
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.7

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.93  E-value=1.2e-24  Score=150.37  Aligned_cols=119  Identities=25%  Similarity=0.367  Sum_probs=115.3

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      .++|+.++.+.++|..+++.|+|++|+.+|+++++++ |+   ++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            5799999999999999999999999999999999999 98   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +|+.+|.++..+|++++|+..|+++++++|+++.+...++.+.
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999887763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=6.6e-24  Score=154.72  Aligned_cols=179  Identities=12%  Similarity=0.106  Sum_probs=164.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      +++..++++|.++...|+|++|+..|+++++++ |+   ++.++..+|.++...|++++|+..+.+++..+|+++.++..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   78 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI   78 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence            467899999999999999999999999999999 99   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      +|.++...++++.|...+.+++.++|++..+...++.++...++..+        +...|++++. .|.+...+..+|.+
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~~l~~~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDK--------AIEAYEKTISIKPGFIRAYQSIGLA  150 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchh--------HHHHHHHHHHhcchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888        5558888888 89999999999999


Q ss_pred             hhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039         166 LVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT  205 (206)
Q Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (206)
                      +..+|++++|.+.+      .++.++-.  +++...+|+|
T Consensus       151 ~~~~g~~~~A~~~~------~~al~~~p--~~a~~~lali  182 (184)
T 3vtx_A          151 YEGKGLRDEAVKYF------KKALEKEE--KKAKYELALV  182 (184)
T ss_dssp             HHHTTCHHHHHHHH------HHHHHTTH--HHHHHCSCCS
T ss_pred             HHHCCCHHHHHHHH------HHHHhCCc--cCHHHHHHhh
Confidence            99999999999999      66666544  4566666665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=2.5e-24  Score=161.86  Aligned_cols=161  Identities=18%  Similarity=0.225  Sum_probs=102.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |+++..++.+|..++..|++++|+..|+++++.+ |+   ++.+++++|.++...|++++|+..|+++++++|+++.+++
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4555666666666666666666666666666666 66   5666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          86 RRCQAYEAI-----------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        86 ~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                      .+|.++...           |++++|+..|+++++++|+++.++..++.++...++..+        +...|++++. . 
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~-  148 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK--------AEASLKQALALE-  148 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHC-
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH--------HHHHHHHHHhcc-
Confidence            666666666           666666666666666666666666666666666666555        3335555555 4 


Q ss_pred             CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         154 APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .+...+..++.++...|++++|...+
T Consensus       149 ~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55556666666666666666655555

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=8.6e-24  Score=158.95  Aligned_cols=166  Identities=14%  Similarity=0.165  Sum_probs=148.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-----------cCHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----------NQNDKVIED   69 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~   69 (206)
                      ++..+|+++.+++.+|.++...|++++|+..|+++++++ |+   +..++.++|.++...           |++++|+..
T Consensus        31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR---YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            367899999999999999999999999999999999999 99   899999999999999           999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      |+++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...++..+        +...|+++
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a  177 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE--------ALAQYAKA  177 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH--------HHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH--------HHHHHHHH
Confidence            999999999999999999999999999999999999999999 999999999999999998888        55599999


Q ss_pred             cC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         150 FD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +. .|.+......++.++...|++++|...+
T Consensus       178 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          178 LEQAPKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHHSTTCHHHHHHHHHHHTC-----------
T ss_pred             HHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            88 8999999999999999999999999887

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.92  E-value=8.4e-24  Score=184.14  Aligned_cols=166  Identities=16%  Similarity=0.150  Sum_probs=157.6

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...|+++++++++|.++...|++++|+.+|+++++++ |+   +..++.++|.+|..+|++++|+..|+++++++|++..
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            4579999999999999999999999999999999999 99   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +++++|.++..+|++++|++.|+++++++|++..++..++.++...++..+        +...|++++. .|.....+..
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e--------Ai~~~~~Al~l~P~~~~a~~~  150 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE--------AIASYRTALKLKPDFPDAYCN  150 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHhh
Confidence            999999999999999999999999999999999999999999999998888        5559999998 8999999999


Q ss_pred             HHhhhhHhcccchhhHHHH
Q psy1039         162 AVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~  180 (206)
                      ++.++..+|++++|.+.+-
T Consensus       151 L~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A          151 LAHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             HHHHHHHTTCCTTHHHHHH
T ss_pred             hhhHHHhcccHHHHHHHHH
Confidence            9999999999999998883

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=3.3e-22  Score=149.30  Aligned_cols=162  Identities=14%  Similarity=0.171  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHH----------------HHHHHHHccCHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN----------------RAAVYLKQNQNDKVIEDCS   71 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~   71 (206)
                      +++.+...|..++..|++++|+.+|+++++.+ |+   ++.+++.                +|.++...|++++|+..|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-ID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            56788999999999999999999999999999 98   8889999                9999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...+......      +...|+++..
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~------~~~~~~~~~~  152 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK------LETDYKKLSS  152 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH------HHHHHC---C
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999987665433321      4557777766


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.........+.++...|++++|...+
T Consensus       153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~  180 (208)
T 3urz_A          153 PTKMQYARYRDGLSKLFTTRYEKARNSL  180 (208)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHccCHHHHHHHH
Confidence            4444445667788889999999998887

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.89  E-value=2.2e-22  Score=143.37  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=108.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|+++.+++.+|..++..|+|++|+.+|++++.++ |+   ++.+|+++|.++..+|+|++|+..|+++++++|++
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            478899999999999999999999999999999999999 99   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      +.+|+++|.++..+|++++|+..|++++++.|+.+
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999865

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=1.2e-22  Score=165.27  Aligned_cols=163  Identities=7%  Similarity=-0.061  Sum_probs=151.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~   80 (206)
                      +..+|+++.++..+|.++...|++++|+..|++++.++ |+   +..+|+++|.++..+|+ +++|+..|+++++++|++
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  165 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-cc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence            57789999999999999999999999999999999999 99   89999999999999997 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ..+|+++|.++..+|++++|+..|++++.++|++..++..++.++..+++...        +..+|++++. .|.+...+
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e--------Al~~~~~al~l~P~~~~a~  237 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN--------ELQYVDQLLKEDVRNNSVW  237 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT--------HHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH--------HHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999888777        5558999998 89999999


Q ss_pred             HHHHhhhhHh-cccchhh
Q psy1039         160 VTAVNNLVVL-AREMSGA  176 (206)
Q Consensus       160 ~~~~~~~~~~-~~~~~a~  176 (206)
                      ..++.++..+ |..++|+
T Consensus       238 ~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          238 NQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHHHHHHTTCSCSHHH
T ss_pred             HHHHHHHHHhcCcchHHH
Confidence            9999999994 4447764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=7.3e-22  Score=148.65  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=139.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +.++..++..|..++..|+|++|+..|+++++++ | .   +...++++|.++...|++++|+..|+++++++|+++.++
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence            4566899999999999999999999999999999 7 6   678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC--
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI-------QPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA--  154 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  154 (206)
                      +.+|.++..+|++++|+..+++++.++|+++..       +..++.++...++..+        +..+|++++. .|.  
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------A~~~~~~al~~~p~~~  151 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK--------AEENYKHATDVTSKKW  151 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH--------HHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999944       6666666666555555        5669999998 688  


Q ss_pred             ChhhhHHHHhhhhHhccc
Q psy1039         155 PMDKRVTAVNNLVVLARE  172 (206)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~  172 (206)
                      ....+..++.++...|+.
T Consensus       152 ~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            788999999999999887

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=1.8e-22  Score=164.07  Aligned_cols=172  Identities=8%  Similarity=-0.025  Sum_probs=152.8

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGD-YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      +|..+|++..+|+.+|.++...|+ +++|+.+|++++.++ |+   +..+|+++|.++..+|++++|+..|++++.++|+
T Consensus       123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            357899999999999999999997 999999999999999 99   8999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-CCCChh
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR-MQENEQLQNKVHNMFKYVFD-TSAPMD  157 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      +..+|+++|.++..+|++++|+.+|++++.++|++..++..++.++..++.. ..+.   ......+|++++. .|.+..
T Consensus       199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~---~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV---LEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH---HHHHHHHHHHHHHHSTTCHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH---HHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999999999999999999999998874433 2221   0112468888888 899999


Q ss_pred             hhHHHHhhhhHhc--ccchhhHHH
Q psy1039         158 KRVTAVNNLVVLA--REMSGAEML  179 (206)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~a~~~~  179 (206)
                      .+..++.++...|  ++++|++.+
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~  299 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQL  299 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHccCccchHHHHHHH
Confidence            9999999999887  467776655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.88  E-value=4.2e-21  Score=134.79  Aligned_cols=128  Identities=11%  Similarity=0.154  Sum_probs=119.5

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|++...++.+|..++..|+|++|+..|++++..+ |+   ++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus        10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            477899999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM  132 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  132 (206)
                      +.+++.+|.++..+|++++|...|++++.++|+++........+...++...
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988777776666555433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.88  E-value=3.1e-21  Score=136.77  Aligned_cols=126  Identities=13%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|++...++.+|..++..|+|++|+..|++++..+ |+   ++.+|+++|.++...|++++|+..|++++.++|++
T Consensus        13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A           13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            367899999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      +.+++.+|.++..+|++++|+..|+++++++|+++........+...+..
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887666665555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.88  E-value=2.9e-22  Score=142.31  Aligned_cols=122  Identities=12%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..++.+|.+|+..|+|++|+.+|+++++++ |+   ++.+|+++|.++...|++++|+..|+++++++|+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ER---DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence            56789999999999999999999999999999999999 99   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTD-AKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      .+++.+|.++...|++++|... ++++++++|+++.+....+.+...
T Consensus       100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999887766 599999999999998887777644

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=2.3e-22  Score=142.88  Aligned_cols=147  Identities=12%  Similarity=0.025  Sum_probs=129.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA   93 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~   93 (206)
                      .+|..+...|++++|+..+++++... |+   ++..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+.+|.++..
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~-p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   77 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP-RQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL   77 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH-HH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            47888999999999999999999999 88   888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcc
Q psy1039          94 IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAR  171 (206)
Q Consensus        94 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  171 (206)
                      +|++++|+..|+++++++|+++.++..++.++...++..++       +..++++++. .|.+.......+..+...|+
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a-------a~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR-------AKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH-------HHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-------HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999887765442       3345688887 78888888888888777665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.8e-21  Score=130.64  Aligned_cols=118  Identities=22%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |..+..++.+|..++..|+|++|+..|+++++++ |+   ++.++.++|.++..+|++++|+..|+++++++|+++.+++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            5678999999999999999999999999999999 98   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLFAI  127 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  127 (206)
                      .+|.++..+|++++|+..|++++.++      |+++.+...+..+...
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999      9998888888777644

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.86  E-value=4e-20  Score=139.36  Aligned_cols=174  Identities=16%  Similarity=0.115  Sum_probs=158.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|.++..+..+|.++...|++++|+..|+++++.. |+   ...++..+|.++...|++++|+..|+++++++|.++
T Consensus        50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  125 (243)
T 2q7f_A           50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG  125 (243)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            45688899999999999999999999999999999999 98   789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      .+++.+|.++...|++++|...+++++...|+++.+...++.++...++...        +..+|++++. .|.+...+.
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~  197 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE--------ALSQFAAVTEQDPGHADAFY  197 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH--------HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcccHHHHH
Confidence            9999999999999999999999999999999999999999999988888777        4457888777 788889999


Q ss_pred             HHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         161 TAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .++.++...|++++|...+      .++.++..
T Consensus       198 ~la~~~~~~~~~~~A~~~~------~~~~~~~p  224 (243)
T 2q7f_A          198 NAGVTYAYKENREKALEML------DKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHTTCTTHHHHHH------HHHHHHCT
T ss_pred             HHHHHHHHccCHHHHHHHH------HHHHccCc
Confidence            9999999999999999888      55555444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=3.6e-20  Score=142.31  Aligned_cols=168  Identities=15%  Similarity=0.192  Sum_probs=143.8

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC--
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--   80 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--   80 (206)
                      ..+|.++..++.+|..++..|+|++|+..|+++++.. |+.+....+++.+|.+++.+|++++|+..|++++.++|++  
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4578889999999999999999999999999999999 9843448999999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHHHHHHHH
Q psy1039          81 -PKALFRRCQAYEA--------IGKFEEAYTDAKHIHRVEPTNKAIQ-----------------PVLSRLFAIVTKRMQE  134 (206)
Q Consensus        81 -~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~  134 (206)
                       +.+++.+|.++..        .|++++|+..|++++..+|+++.+.                 ..++.++...++... 
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-  166 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA-  166 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH-
Confidence             6789999999999        9999999999999999999998777                 555777777666666 


Q ss_pred             HHHHHHHHHHHHHHhcC-CCC---ChhhhHHHHhhhhHh----------cccchhhHHH
Q psy1039         135 NEQLQNKVHNMFKYVFD-TSA---PMDKRVTAVNNLVVL----------AREMSGAEML  179 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~----------~~~~~a~~~~  179 (206)
                             +...|++++. .|.   .......++.++..+          |++++|...+
T Consensus       167 -------A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~  218 (261)
T 3qky_A          167 -------AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY  218 (261)
T ss_dssp             -------HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence                   5557877776 454   456788899999977          7777777766

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.85  E-value=2.5e-20  Score=133.39  Aligned_cols=124  Identities=27%  Similarity=0.351  Sum_probs=115.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------cccCcHHHHHHHHHHHHHHHHccCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKV------------------TAEESHERATCLKNRAAVYLKQNQNDKVI   67 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~p~~~~~~~~~~~la~~~~~~~~~~~A~   67 (206)
                      ...+..+...|..++..|+|++|+..|.+++.+                  + |.   ...++.++|.|+..+|+|++|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RK---NIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HT---HHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HH---HHHHHHHHHHHHHhcCcHHHHH
Confidence            456889999999999999999999999999999                  5 65   7899999999999999999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHHHH
Q psy1039          68 EDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        68 ~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~  133 (206)
                      .+|++++.++|+++.+++++|.++..+|++++|+..|++++.++|+++ .+...+..+...+++..+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 778888888777665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.85  E-value=2.6e-20  Score=150.43  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |++...+..+|.++...|++++|+..|.+++.++ |+   +..++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus       200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T 1w3b_A          200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3334444444444444444444444444444444 43   4445555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  164 (206)
                      .+|.++...|++++|...|++++.++|+++.++..++.++...++..+        +..+|++++. .|........++.
T Consensus       276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE--------AVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCCCcHHHHHHHHH
Confidence            555555555555555555555555555555555555555554444444        4446777776 5677777777777


Q ss_pred             hhhHhcccchhhHHH
Q psy1039         165 NLVVLAREMSGAEML  179 (206)
Q Consensus       165 ~~~~~~~~~~a~~~~  179 (206)
                      ++...|++++|...+
T Consensus       348 ~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          348 VLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHTTTCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            777777777777776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.85  E-value=1.4e-20  Score=133.86  Aligned_cols=126  Identities=17%  Similarity=0.258  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------c--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------S--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-   76 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-   76 (206)
                      ..+..+...|+.++..|+|++|+..|+++++++ |+       .  +..+.+|.++|.++..+|+|++|+.+|++++++ 
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            357789999999999999999999999999999 87       2  234569999999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          77 ------VPDDPKAL----FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        77 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                            +|++..+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+...+.....
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~  154 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA  154 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence                  99999999    9999999999999999999999999999999999988888877666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.85  E-value=4.5e-20  Score=138.83  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=137.1

Q ss_pred             cccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNM-NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +..+| .+...++.+|.+++..|++++|+.+|+++++.+ |+   +..++..+|.++..+|++++|+..|+++++++|++
T Consensus        34 l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           34 LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            34566 778899999999999999999999999999999 99   99999999999999999999999999999999999


Q ss_pred             H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHH-HH----------------
Q psy1039          81 P-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRM-QE----------------  134 (206)
Q Consensus        81 ~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~-~~----------------  134 (206)
                      +       .+++.+|.++...|++++|+..|+++++++|+  ++.++..++.++...+... ..                
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  189 (228)
T 4i17_A          110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK  189 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            8       67999999999999999999999999999999  9999999999998777651 11                


Q ss_pred             --HHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039         135 --NEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus       135 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                        .......+..+|++++. .|.+......++.+
T Consensus       190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence              00111346677888877 67777666655544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.85  E-value=7.2e-20  Score=131.26  Aligned_cols=115  Identities=26%  Similarity=0.300  Sum_probs=109.2

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..++.++..++.+|..++..|+|++|+.+|+++++++ |+   +..+++++|.++..+|++++|+.+|+++++++|+++.
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            4577899999999999999999999999999999999 98   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +++.+|.++..+|++++|+..|++++.++|+++.++...
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            999999999999999999999999999999999854443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=4e-20  Score=148.04  Aligned_cols=166  Identities=13%  Similarity=0.122  Sum_probs=131.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC----
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV----   77 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----   77 (206)
                      +..+|+++..++.+|.++...|++++|+.+|++++.++ |+   +..++..+|.++...|++++|+..|+++++++    
T Consensus        92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A           92 ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence            34567777777777777777777777777777777777 76   56667777777777666666666666655544    


Q ss_pred             ----------------------------------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          78 ----------------------------------------PD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        78 ----------------------------------------p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                                                              |.  ++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  247 (365)
T 4eqf_A          168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY  247 (365)
T ss_dssp             CC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                                                    44  778888889999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         116 AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .++..++.++...++..+        +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus       248 ~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  304 (365)
T 4eqf_A          248 SLWNRLGATLANGDRSEE--------AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF  304 (365)
T ss_dssp             HHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888888888888887777        4558888887 7888899999999999999999998888

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.85  E-value=1.7e-20  Score=136.58  Aligned_cols=139  Identities=12%  Similarity=0.178  Sum_probs=132.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +|+.+|+++.+++.+|.++...|++++|+..+.+++... |+   ....+..+|.++...++++.|...+.+++.++|.+
T Consensus        31 al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~  106 (184)
T 3vtx_A           31 VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TT---SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY  106 (184)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            357799999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...++..+        +..+|++++.
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~  169 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE--------AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH--------HHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999888        5558888887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=1.5e-19  Score=130.24  Aligned_cols=171  Identities=16%  Similarity=0.135  Sum_probs=156.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .+.....++.+|..++..|++++|+..|++++... |+   +..++..+|.++...|++++|+..+++++..+|.+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   79 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AF---DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA   79 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            44567889999999999999999999999999999 98   789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +.+|.++...|++++|...+++++..+|+++.+...++.++...++..+        +..++++++. .|.+......++
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE--------AIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH--------HHHHHHHHHhcCccchHHHHHHH
Confidence            9999999999999999999999999999999999999999988888777        4457888777 688889999999


Q ss_pred             hhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         164 NNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .++...|++++|...+      .++.++..
T Consensus       152 ~~~~~~~~~~~A~~~~------~~~~~~~~  175 (186)
T 3as5_A          152 FSYEQMGRHEEALPHF------KKANELDE  175 (186)
T ss_dssp             HHHHHTTCHHHHHHHH------HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH------HHHHHcCC
Confidence            9999999999999988      66666555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=2e-20  Score=156.07  Aligned_cols=164  Identities=13%  Similarity=0.067  Sum_probs=154.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDY-ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ...|.++..++.+|..++..|+| ++|+.+|+++++++ |+   +..+|..+|.+|...|++++|+..|+++++++|+ .
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~  170 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K  170 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H
Confidence            34678899999999999999999 99999999999999 98   8999999999999999999999999999999999 7


Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAI---------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV--------TKRMQENEQLQNKVHN  144 (206)
Q Consensus        82 ~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~  144 (206)
                      .+++.+|.++..+         |++++|+..|+++++++|++..++..++.++...        ++..+        +..
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~--------A~~  242 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ--------ALS  242 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH--------HHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH--------HHH
Confidence            9999999999999         9999999999999999999999999999999988        77777        555


Q ss_pred             HHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         145 MFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       145 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +|++++. .|   .+...+..++.++...|++++|...+
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888 78   89999999999999999999998888

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.85  E-value=1.3e-19  Score=144.80  Aligned_cols=134  Identities=28%  Similarity=0.372  Sum_probs=124.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIED   69 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~   69 (206)
                      +..+|+++..++.+|..++..|+|++|+.+|++++.+. |+.            +....++.++|.|+..+|++++|+.+
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  218 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34578899999999999999999999999999999999 871            11168999999999999999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      |+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++..++..
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988877654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.85  E-value=2.8e-19  Score=132.93  Aligned_cols=165  Identities=14%  Similarity=0.009  Sum_probs=148.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|+++..++.+|..++..|++++|+.+|+++++.. |+   ...++..+|.++...|++++|+..|++++.++|.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   77 (225)
T 2vq2_A            2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE   77 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            3578899999999999999999999999999999999 98   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          83 ALFRRCQAYEAI-GKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        83 ~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      +++.+|.++... |++++|...+++++.  .+|.+..++..++.++...++..+        +..+|++++. .|.+...
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~  149 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL--------AEAYLKRSLAAQPQFPPA  149 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCchH
Confidence            999999999999 999999999999999  666667888889999888887777        4457888777 6888899


Q ss_pred             hHHHHhhhhHhcccchhhHHH
Q psy1039         159 RVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       159 ~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +..++.++...|++++|...+
T Consensus       150 ~~~la~~~~~~~~~~~A~~~~  170 (225)
T 2vq2_A          150 FKELARTKMLAGQLGDADYYF  170 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999888777

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.84  E-value=1.8e-20  Score=156.38  Aligned_cols=170  Identities=15%  Similarity=0.109  Sum_probs=159.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSK   72 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~   72 (206)
                      ++.+|+++.+++.+|.+++..|++++|+.+|+++++++ |+    ..++.++|.++...         |++++|+..|++
T Consensus       130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~  204 (474)
T 4abn_A          130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL  204 (474)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence            56789999999999999999999999999999999999 98    48999999999999         999999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          73 SLEIVPDDPKALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEP---TNKAIQPVLSRLFAIVTKRMQENEQLQNK  141 (206)
Q Consensus        73 al~l~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  141 (206)
                      +++++|+++.+|+.+|.++..+        |++++|+..|++++.++|   +++.++..++.++...++..+        
T Consensus       205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~--------  276 (474)
T 4abn_A          205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE--------  276 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHH--------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHH--------
Confidence            9999999999999999999999        999999999999999999   999999999999999998888        


Q ss_pred             HHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         142 VHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      +...|++++. .|.....+..++.++...|++++|+..+-+-..
T Consensus       277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~  320 (474)
T 4abn_A          277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP  320 (474)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            5558999888 789999999999999999999999987765533

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=4.8e-20  Score=148.84  Aligned_cols=165  Identities=12%  Similarity=0.071  Sum_probs=116.6

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|+++..+..+|.++...|++++|+..|+++++++ |+   ...++..+|.++...|++++|+..|++++.++|+++.
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence            3456666666777777777777777777777777766 66   5666777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +++.+|.++...|++++|+..|++++.++|+++.++..++.++...++..+        +..+|++++. .|.+......
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~  310 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE--------AEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhhCcccHHHHHH
Confidence            777777777777777777777777777777777777777777766666665        4446666666 6777777777


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.++...|++++|...+
T Consensus       311 l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          311 LANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            777777777777776665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.84  E-value=7.1e-20  Score=126.39  Aligned_cols=113  Identities=23%  Similarity=0.302  Sum_probs=102.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----   80 (206)
                      .++.+.++.++|+.+++.|+|++|+.+|+++++++ |+   ++.++.++|.+|..+|+|++|+.+|+++++++|++    
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            46788999999999999999999999999999999 99   89999999999999999999999999999998876    


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (206)
Q Consensus        81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  122 (206)
                         ..+++++|.++..+|++++|+..|++++...|+ ++....+.
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence               358999999999999999999999999999885 44444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.84  E-value=4.6e-19  Score=145.21  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=146.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|.++..++.+|..++..|++++|+..|+++++.+ |+   +..+++.+|.++...|++++|+..|+++++++|++
T Consensus        18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   93 (450)
T 2y4t_A           18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF   93 (450)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            356789999999999999999999999999999999999 98   79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRL------------FAIVTKRMQENEQLQNKVHNM  145 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~  145 (206)
                      ..+++.+|.++..+|++++|...|++++..+|++.   .++..+..+            +...++...        +..+
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~  165 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA--------AIAF  165 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--------HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--------HHHH
Confidence            99999999999999999999999999999999998   777777554            333333333        5668


Q ss_pred             HHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         146 FKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       146 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      |++++. .|.+......++.++...|++++|...+
T Consensus       166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (450)
T 2y4t_A          166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDL  200 (450)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888887 7888999999999999999999998887

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.84  E-value=3.2e-19  Score=135.52  Aligned_cols=163  Identities=10%  Similarity=0.062  Sum_probs=80.4

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--hCCCCHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--IVPDDPK   82 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~~~~   82 (206)
                      +|.++..+..+|..+...|++++|+.+|+++++.. |+   +..++..+|.++...|++++|+..|++++.  .+|.+..
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  142 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR  142 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHH
Confidence            34444444445555555555555555555555444 44   344444455555555555555555555544  4444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +++.+|.++...|++++|...+++++..+|.++.+...++.++...++..+        +..++++++. .|........
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~  214 (252)
T 2ho1_A          143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP--------ARQYYDLFAQGGGQNARSLLL  214 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCcCcHHHHHH
Confidence            555555555555555555555555555555555444444444444444444        2234444444 3444455555


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      .+.++...|++++|...+
T Consensus       215 ~~~~~~~~g~~~~A~~~~  232 (252)
T 2ho1_A          215 GIRLAKVFEDRDTAASYG  232 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHH
Confidence            555555555555554444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.83  E-value=2.2e-20  Score=162.63  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=126.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ||+.+|+++.+++++|.++...|++++|+.+|+++++++ |+   ++.+++++|.++..+|++++|++.|+++++++|++
T Consensus        35 Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            367799999999999999999999999999999999999 99   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ..+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..++..
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999888777554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=142.00  Aligned_cols=166  Identities=8%  Similarity=-0.002  Sum_probs=148.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +..+|+++..++.+|..+...| ++++|+.+|++++..+ |+   ...++..+|.++...|++++|+..|++++.+.|++
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B           83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence            4567889999999999999999 9999999999999999 98   78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-------
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T-------  152 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  152 (206)
                      ..+++.+|.++...|++++|...+++++..+|+++.++..++.++...++..++..        ++++++. .       
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~a~~~~~~~~~~~  230 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK--------WFLDALEKIKAIGNEV  230 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHTTTSCSC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH--------HHHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999999999999998888777444        4444443 1       


Q ss_pred             --CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         153 --SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       153 --~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                        +........++.++...|++++|...+
T Consensus       231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          231 TVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence              555678888999999999998888877

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.1e-19  Score=137.86  Aligned_cols=164  Identities=15%  Similarity=0.177  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-------
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-------   75 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------   75 (206)
                      .++..++.+|.++...|++++|+.+|.+++++. |+.    +..+.++..+|.++...|++++|+..|++++.       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  114 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI  114 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHH
Confidence            566788889999999999999999999999888 641    11178899999999999999999999999999       


Q ss_pred             -------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          76 -------------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        76 -------------------l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                                         .+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..++.++...++...   
T Consensus       115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~---  191 (258)
T 3uq3_A          115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE---  191 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH---
T ss_pred             HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH---
Confidence                               6677788999999999999999999999999999999999999999999998888877   


Q ss_pred             HHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         137 QLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                           +..+|++++. .|.+......++.++...|++++|...+
T Consensus       192 -----A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          192 -----AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             -----HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                 4558888887 7888999999999999999999998888

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=5.4e-19  Score=133.21  Aligned_cols=163  Identities=12%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH---HH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---AL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~   84 (206)
                      ++..++.+|..++..|+|++|+..|++++... |+.+....+++.+|.+++..|++++|+..|+++++.+|+++.   ++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            46789999999999999999999999999998 875556789999999999999999999999999999999864   89


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-----------------HHHHH
Q psy1039          85 FRRCQAYEA------------------IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL-----------------FAIVT  129 (206)
Q Consensus        85 ~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-----------------~~~~~  129 (206)
                      +.+|.++..                  .|++++|+..|++++..+|+++.+......+                 +...+
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999886                  5799999999999999999998776443332                 22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCCCh---hhhHHHHhhhhHhcccchhhHHH
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFD-TSAPM---DKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +...        +...|++++. .|.+.   ..+..++.++..+|++++|...+
T Consensus       162 ~~~~--------A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          162 AWVA--------VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             CHHH--------HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHH--------HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            2222        5667888887 56554   67889999999999999998877

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.4e-19  Score=140.66  Aligned_cols=167  Identities=10%  Similarity=0.001  Sum_probs=155.4

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..+..+|..+...|++++|+..|+++++.. |+   ....+..+|.++...|++++|+..|++++.++|+++
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence            56789999999999999999999999999999999999 98   778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVE---------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      .+++.+|.++...|++++|...+++++...         |.++.++..++.++...++..+        +..+|++++. 
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a~~~  265 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE--------ALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHHhh
Confidence            999999999999999999999999999986         6778899999999999888887        5558888888 


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      .|.+...+..++.++...|++++|...+-
T Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          266 IPQNASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             STTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            78899999999999999999999998884

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=4.8e-19  Score=134.54  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=152.3

Q ss_pred             cchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           4 NNMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         4 ~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      .+|.+ +..++.+|..++..|++++|+.+|++++... |.   ...++..+|.++...|++++|+..|++++.++|.+..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  106 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence            46766 8999999999999999999999999999999 98   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      +++.+|.++...|++++|...+++++.  ..|.+..+...++.++...++..+        +..+|++++. .|.+....
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~  178 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ--------AKEYFEKSLRLNRNQPSVA  178 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhcCcccHHHH
Confidence            999999999999999999999999999  888889999999999988888777        4558888887 78889999


Q ss_pred             HHHHhhhhHhcccchhhHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..++.++...|++++|...+
T Consensus       179 ~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          179 LEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999988877

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=8.2e-19  Score=139.98  Aligned_cols=166  Identities=12%  Similarity=0.152  Sum_probs=133.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC---
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---   78 (206)
                      +..+|+++..++.+|.++...|++++|+.+|+++++++ |+   +..++..+|.++...|++++|+..|++++.++|   
T Consensus        91 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A           91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            45577788888888888888888888888888888888 77   677788888888887777777766666555444   


Q ss_pred             ----------------------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          79 ----------------------------------------------D--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        79 ----------------------------------------------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                                                                    .  ++.+++.+|.++...|++++|+..|++++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  246 (368)
T 1fch_A          167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV  246 (368)
T ss_dssp             GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                                                          4  5677888888888888888888888888888


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       111 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +|+++.++..++.++...++..+        +..+|++++. .|.+......++.++...|++++|...+
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  308 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEE--------AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  308 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            88888888888888888777777        4457888777 7888888899999999999999888887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.82  E-value=4.9e-19  Score=122.52  Aligned_cols=124  Identities=24%  Similarity=0.296  Sum_probs=112.8

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|.++..++.+|..++..|+|++|+.+|.+++..+ |+   +..+++++|.++..+|++++|+..|+++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence            4567889999999999999999999999999999999 98   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~  130 (206)
                      +++.+|.++..+|++++|+..|++++.++|+     +..+...+..+......
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998     67777777666554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.82  E-value=5.4e-19  Score=135.69  Aligned_cols=165  Identities=12%  Similarity=0.122  Sum_probs=137.8

Q ss_pred             cccchhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH--------ccCHHHHHHHH
Q psy1039           2 IDNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK--------QNQNDKVIEDC   70 (206)
Q Consensus         2 l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~   70 (206)
                      +..+|++   +.+++.+|.+++..|+|++|+..|+++++.. |+.+....+++.+|.+++.        .|++++|+..|
T Consensus        42 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~  120 (261)
T 3qky_A           42 FTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAF  120 (261)
T ss_dssp             GGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH
T ss_pred             HHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence            4566777   9999999999999999999999999999998 8655578899999999999        99999999999


Q ss_pred             HHHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHH--
Q psy1039          71 SKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIV--  128 (206)
Q Consensus        71 ~~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~--  128 (206)
                      ++++..+|++..+.                 +.+|.++...|++++|+..|++++...|++   +.++..++.++..+  
T Consensus       121 ~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~  200 (261)
T 3qky_A          121 QLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE  200 (261)
T ss_dssp             HHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence            99999999987665                 889999999999999999999999999985   56888888888877  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHhcC-CCCC---hhhhHHHHhhhhHhcccchh
Q psy1039         129 --------TKRMQENEQLQNKVHNMFKYVFD-TSAP---MDKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       129 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~a  175 (206)
                              ++..+        +..+|++++. .|.+   ......+..++...++++++
T Consensus       201 ~~~~~~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          201 QSVRARQPERYRR--------AVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             TSCGGGHHHHHHH--------HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhhcccchHHH--------HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence                    33344        5668888887 5655   34445566666666666443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.82  E-value=4e-19  Score=147.57  Aligned_cols=145  Identities=28%  Similarity=0.368  Sum_probs=121.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIEDC   70 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~   70 (206)
                      ..+|+.+..++.+|..++..|+|++|+..|.+++++. |+.            .....++.++|.|+.++|+|++|+.+|
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  340 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC  340 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4578899999999999999999999999999999999 871            011689999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      +++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++..++....   ...+|.++.
T Consensus       341 ~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~---~~~~f~k~~  417 (457)
T 1kt0_A          341 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI---YANMFKKFA  417 (457)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH---HHHC-----
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999988877655422   334444444


Q ss_pred             C
Q psy1039         151 D  151 (206)
Q Consensus       151 ~  151 (206)
                      .
T Consensus       418 ~  418 (457)
T 1kt0_A          418 E  418 (457)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.82  E-value=3.9e-19  Score=136.37  Aligned_cols=168  Identities=8%  Similarity=0.042  Sum_probs=142.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..++.+|.+++..|++++|+..|+++++.. ++......++..+|.++...|++++|+..|+++++++|.++
T Consensus        30 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           30 EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            45678888899999999999999999999999999943 33223356689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS-RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      .++..+|.++...|++++|+..|++++..+|+++.++..++ .++.. ++..+        +...|++++. .|.+....
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~--------A~~~~~~a~~~~p~~~~~~  179 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVK--------ADSSFVKVLELKPNIYIGY  179 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHH--------HHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHhCccchHHH
Confidence            99999999999999999999999999999999999999998 55543 34444        5568888888 78888888


Q ss_pred             HHHHhhhhHhcc---cchhhHHH
Q psy1039         160 VTAVNNLVVLAR---EMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~---~~~a~~~~  179 (206)
                      ...+.++...++   +++|...+
T Consensus       180 ~~~~~~~~~~~~~~~~~~A~~~~  202 (272)
T 3u4t_A          180 LWRARANAAQDPDTKQGLAKPYY  202 (272)
T ss_dssp             HHHHHHHHHHSTTCSSCTTHHHH
T ss_pred             HHHHHHHHHcCcchhhHHHHHHH
Confidence            999999999988   77777777

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.82  E-value=5.5e-19  Score=139.81  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=140.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      +++.++.+|..++..|++++|+..|+++++.+ |+   ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            67899999999999999999999999999999 98   889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC---CChhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEP---TNKAIQPVLS------------RLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      |.++...|++++|...|++++..+|   +++.+...++            .++...++...        +..++++++. 
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~  149 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA--------AITFLDKILEV  149 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHh
Confidence            9999999999999999999999999   8888888874            34444444433        4557777776 


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .|.+.......+.++...|++++|...+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~  177 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDL  177 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            6777788888888888888887777766

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.82  E-value=5.3e-19  Score=139.89  Aligned_cols=166  Identities=15%  Similarity=0.104  Sum_probs=155.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC---
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---   78 (206)
                      +..+|+++..++.+|.+++..|++++|+..|+++++.+ |+   +..++..+|.++...|++++|+..|++++.++|   
T Consensus        30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  105 (359)
T 3ieg_A           30 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ  105 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc
Confidence            45689999999999999999999999999999999999 98   789999999999999999999999999999999   


Q ss_pred             CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          79 DDPKALFRR------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        79 ~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                      +++.++..+            |.++...|++++|+..+++++..+|+++.+...++.++...++...        +...+
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------A~~~~  177 (359)
T 3ieg_A          106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRK--------AISDL  177 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHH--------HHHHH
Confidence            898888877            7999999999999999999999999999999999999999988887        55588


Q ss_pred             HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++++. .|.+...+..++.++...|++++|...+
T Consensus       178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888 7889999999999999999999888876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=4.6e-19  Score=141.82  Aligned_cols=161  Identities=18%  Similarity=0.202  Sum_probs=128.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .+...++.+|..++..|++++|+.+|++++..+ |+   +..++..+|.++...|++++|+..|++++.++|++..+++.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  138 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA  138 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            345569999999999999999999999999999 98   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChh----------------------------------------------HHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA----------------------------------------------IQPV  120 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------------------------------------~~~~  120 (206)
                      +|.++...|++++|+..|++++.++|++..                                              ++..
T Consensus       139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            999999999999999999999888776444                                              4444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.++...++..+        +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus       219 l~~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          219 LGVLFHLSGEFNR--------AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             HHHHHHHHTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444444444333        3335555555 4555666666666666666666665555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=1.4e-18  Score=129.02  Aligned_cols=166  Identities=13%  Similarity=0.046  Sum_probs=149.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhh--hCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLE--IVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--l~p   78 (206)
                      +..+|+++..+..+|.++...|++++|+.+|++++... |+   +...+..+|.++... |++++|+..|++++.  .+|
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD---SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP  110 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence            45678889999999999999999999999999999999 98   788999999999999 999999999999999  677


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCh
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-APM  156 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~  156 (206)
                      .+..+++.+|.++...|++++|...+++++..+|+++.+...++.++...++..+        +..++++++. .| .+.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~  182 (225)
T 2vq2_A          111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD--------ADYYFKKYQSRVEVLQA  182 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHHCSCCH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCCH
Confidence            7789999999999999999999999999999999999999999999999888877        4447777777 56 777


Q ss_pred             hhhHHHHhhhhHhcccchhhHHH
Q psy1039         157 DKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ......+.++...|+.+++...+
T Consensus       183 ~~~~~~~~~~~~~~~~~~a~~~~  205 (225)
T 2vq2_A          183 DDLLLGWKIAKALGNAQAAYEYE  205 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHH
Confidence            77888888888888887776655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=2.9e-19  Score=134.57  Aligned_cols=161  Identities=16%  Similarity=0.113  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      -.+..++.+|..++..|++++|+.+|++++... |+   +..++..+|.++...|++++|+..|++++.++|.+..+++.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   96 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG   96 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence            356789999999999999999999999999999 98   78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      +|.++...|++++|...+++++..+|+++.+...++.++...++..+        +..++++++. .|.+.......+.+
T Consensus        97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A           97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL--------ALPYLQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHhCCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888877        4558888887 78889999999999


Q ss_pred             hhHhcccchhhHHH
Q psy1039         166 LVVLAREMSGAEML  179 (206)
Q Consensus       166 ~~~~~~~~~a~~~~  179 (206)
                      +...|++++|...+
T Consensus       169 ~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          169 LANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHTCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHH
Confidence            99999999998887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=5e-18  Score=130.07  Aligned_cols=170  Identities=15%  Similarity=0.054  Sum_probs=139.4

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|.++..++.+|..++..|++++|+.+|++++..+ |+   +..++..+|.++...|++++|+..|++++.++|.++.++
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  114 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  114 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH
Confidence            57899999999999999999999999999999999 98   889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN------------------------  140 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------  140 (206)
                      +.+|.++...|++++|...|++++.++|+++.....+... ...++...+...+..                        
T Consensus       115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (275)
T 1xnf_A          115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE  193 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999999998666555443 333444443322211                        


Q ss_pred             -HHHHHHHHhcCC-C----CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         141 -KVHNMFKYVFDT-S----APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       141 -~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                       .+...+++++.. +    ........++.++...|++++|...+
T Consensus       194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  238 (275)
T 1xnf_A          194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF  238 (275)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence             123444454441 2    12466778888888888888888877

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=8.1e-20  Score=158.62  Aligned_cols=156  Identities=13%  Similarity=0.022  Sum_probs=145.0

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|+++..++.+|..++..|++++|+..|+++++.+ |+   +..+++++|.++..+|++++|+..|+++++++|+++.
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  502 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA  502 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            5679999999999999999999999999999999999 99   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +++++|.++..+|++++ +..|+++++++|++..++..++.++...++..+        +...|++++. .|.....+..
T Consensus       503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~  573 (681)
T 2pzi_A          503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG--------AVRTLDEVPPTSRHFTTARLT  573 (681)
T ss_dssp             HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHTSCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH--------HHHHHHhhcccCcccHHHHHH
Confidence            99999999999999999 999999999999999999999999999998888        5569999998 7888999999


Q ss_pred             HHhhhhHhcc
Q psy1039         162 AVNNLVVLAR  171 (206)
Q Consensus       162 ~~~~~~~~~~  171 (206)
                      .+.+++..++
T Consensus       574 ~~~~~~~~~~  583 (681)
T 2pzi_A          574 SAVTLLSGRS  583 (681)
T ss_dssp             HHHHTC----
T ss_pred             HHHHHHccCC
Confidence            9999987554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=5e-19  Score=122.01  Aligned_cols=121  Identities=12%  Similarity=0.161  Sum_probs=110.9

Q ss_pred             HHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          34 KALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        34 ~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      ++..++ |+   .+..+.++|..+++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|+
T Consensus         4 r~a~in-P~---~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            4 RLAYIN-PE---LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             ---CCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            445678 88   89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039         114 NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      ++.++..++.++..+++..+        +...|++++. .|.+...+..+++++
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~--------A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSK--------AQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999888        5559999998 899998888887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=8.1e-19  Score=133.01  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=144.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-----   80 (206)
                      +..++.++.+|..++..|++++|+.+|+++++.+ ++    ..++..+|.++...|++++|+..|++++.++|.+     
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence            5788999999999999999999999999999998 54    7899999999999999999999999999999877     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChhHHHHHHHHHHHHHHHH
Q psy1039          81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHR--------------------------VEPTNKAIQPVLSRLFAIVTKRM  132 (206)
Q Consensus        81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~~  132 (206)
                        +.+++.+|.++...|++++|...|++++.                          .+|.++.++..++.++...++..
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence              79999999999999999999999999999                          55666677777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         133 QENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .        +..+|++++. .|.+......++.++...|++++|...+
T Consensus       157 ~--------A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          157 N--------AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             H--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             H--------HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            6        5558888888 7888999999999999999999998888

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.80  E-value=3.7e-18  Score=116.17  Aligned_cols=124  Identities=27%  Similarity=0.387  Sum_probs=117.2

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|.++..++.+|..++..|++++|+..|++++... |+   +..++..+|.++...|++++|+..+++++.++|+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   81 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK   81 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH
Confidence            4678999999999999999999999999999999999 98   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      +++.+|.++...|++++|...+++++..+|+++.+...++.++..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999888776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=2.7e-18  Score=136.99  Aligned_cols=158  Identities=14%  Similarity=0.158  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ...++.+|..++..|++++|+.+|+++++.+ |+   +..++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  139 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA  139 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4678999999999999999999999999999 98   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP----------------VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      .++...|++++|...+++++..+|++.....                .++.++ ..++..+        +..+|++++. 
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------A~~~~~~a~~~  210 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLE--------VKELFLAAVRL  210 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHH--------HHHHHHHHHHh
Confidence            9999999999999999999999999887765                344444 5555554        4446666666 


Q ss_pred             CCC--ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 TSA--PMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 ~~~--~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .|.  +......++.++...|++++|...+
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~  240 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCF  240 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555  6677777888888888887777766

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.80  E-value=3.5e-18  Score=126.09  Aligned_cols=131  Identities=24%  Similarity=0.312  Sum_probs=118.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH-------------HHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------ERATCLKNRAAVYLKQNQNDKVIEDC   70 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~   70 (206)
                      ..+..+..+..+|..++..|+|++|+.+|.+++.+. |+.+             ....++.++|.++..+|++++|+.+|
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            346678899999999999999999999999999998 7621             01388999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  135 (206)
                      ++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+...+++..+..
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888776644

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=6.7e-18  Score=117.77  Aligned_cols=122  Identities=36%  Similarity=0.519  Sum_probs=113.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|.++..++.+|..++..|+|++|+.+|+++++.. |+......++.++|.++...|++++|+..|++++.++|+++.
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            4567889999999999999999999999999999999 982223899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +++.+|.++..+|++++|...|++++.++|+++.+...+..+.
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888777664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=2.1e-18  Score=132.28  Aligned_cols=159  Identities=9%  Similarity=0.014  Sum_probs=140.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----HHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKA   83 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~~   83 (206)
                      +++.++..|..++..|++++|+..|+++++.+ |+   +..++..+|.++...|++++|+..|++++. .|.+    ..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~   76 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YN---SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSAD   76 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHH
Confidence            45678999999999999999999999999999 98   788999999999999999999999999999 4444    455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      ++.+|.++...|++++|+..|++++..+|+++.++..++.++...++...        +..+|++++. .|.+...+..+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~al~~~~~~~~~~~~l  148 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL--------AIQYMEKQIRPTTTDPKVFYEL  148 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHH--------HHHHHGGGCCSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHH--------HHHHHHHHhhcCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888        5559999999 78899999999


Q ss_pred             HhhhhHhcccchhhHHH
Q psy1039         163 VNNLVVLAREMSGAEML  179 (206)
Q Consensus       163 ~~~~~~~~~~~~a~~~~  179 (206)
                      +......+++++|...+
T Consensus       149 ~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A          149 GQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            94444455888888776

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=118.25  Aligned_cols=122  Identities=25%  Similarity=0.364  Sum_probs=115.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ...|.+..+++.+|..++..|++++|+.+|+++++.. |+   +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            3467889999999999999999999999999999999 98   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      +++.+|.++...|++++|...|++++..+|++..+...++.++...
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999888887654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.79  E-value=6e-19  Score=153.14  Aligned_cols=163  Identities=11%  Similarity=0.016  Sum_probs=150.2

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKAL--------KVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      ..+|+++..++..|   +..|++++|++.|++++        ..+ |+   +..+++.+|.++..+|++++|+..|++++
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al  460 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDF-SE---SVELPLMEVRALLDLGDVAKATRKLDDLA  460 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CC-TT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccc-cc---chhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            35677777877777   88999999999999999        888 88   88999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                      +++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+ ..        +|++++. .|
T Consensus       461 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~--------~~~~al~~~P  531 (681)
T 2pzi_A          461 ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK--------FYQTVWSTND  531 (681)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC--------HHHHHHHHCT
T ss_pred             ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH--------HHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999998887766 55        8888888 79


Q ss_pred             CChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         154 APMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      .+...+..++.++..+|++++|...+-+
T Consensus       532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          532 GVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999988864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=3.7e-19  Score=126.57  Aligned_cols=112  Identities=5%  Similarity=-0.050  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      +-..+++++.++ |+   +...++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|+|++|+..|+++
T Consensus        21 ~~~~l~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           21 SGATLKDINAIP-DD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             TSCCTGGGCCSC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCC-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            334578888899 98   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +.++|+++.++..++.++..+++...        +...|++++.
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~e--------A~~~~~~al~  132 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLK--------AKECFELVIQ  132 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHH--------HHHHHHHHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHH
Confidence            99999999999999999999999988        5558888888

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.79  E-value=1e-18  Score=126.82  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=140.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      ||...+.++..|..++..|++++|+..|+++++.+ |+   +..+++.+|.++...|++++|+..|++++..+| ++..+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~   76 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK   76 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH
Confidence            56666789999999999999999999999999999 99   899999999999999999999999999999999 88776


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC--ChhhhH
Q psy1039          85 FRRCQAYE-AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA--PMDKRV  160 (206)
Q Consensus        85 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~  160 (206)
                      ..++.+.. ..+...+|+..+++++..+|+++.++..++.++...++..+        +...|++++. .|.  +...+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~l~~~p~~~~~~a~~  148 (176)
T 2r5s_A           77 SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE--------ALELLWNILKVNLGAQDGEVKK  148 (176)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTCTTTTTTHHHH
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH--------HHHHHHHHHHhCcccChHHHHH
Confidence            66665533 33444568999999999999999999999999999998888        5558888888 454  356889


Q ss_pred             HHHhhhhHhcccchhhHHHH
Q psy1039         161 TAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~  180 (206)
                      .++.++...|+.++|...+.
T Consensus       149 ~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHH
Confidence            99999999999999998883

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.79  E-value=1.5e-17  Score=111.25  Aligned_cols=115  Identities=30%  Similarity=0.443  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      +.+..++.+|..++..|++++|+.+|++++... |+   +..++..+|.++...|++++|+..+++++.++|+++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   77 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence            357889999999999999999999999999999 98   78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +|.++...|++++|...+++++..+|+++.+...++.+.
T Consensus        78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999999999999988887764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.78  E-value=1.9e-18  Score=118.19  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ...++.+|..++..|++++|+..|+++++.+ |+   +..+|+.+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3468999999999999999999999999999 99   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                      .++...|++++|+..|+++++++|++..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=3.7e-18  Score=139.79  Aligned_cols=166  Identities=14%  Similarity=0.118  Sum_probs=152.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..++.+|..++..|++++|+..|+++++.+ |+   +..++..+|.++..+|++++|+..|++++.++|++.
T Consensus        53 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            45678999999999999999999999999999999999 98   789999999999999999999999999999999988


Q ss_pred             ---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          82 ---KALFRR------------CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        82 ---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                         .++..+            |.++...|++++|+..|++++..+|+++.+...++.++...++..+        +..+|
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~  200 (450)
T 2y4t_A          129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK--------AISDL  200 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGG--------GHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH--------HHHHH
Confidence               776555            7779999999999999999999999999999999999999888777        44588


Q ss_pred             HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++++. .|.+...+..++.++...|++++|...+
T Consensus       201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  234 (450)
T 2y4t_A          201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV  234 (450)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88877 6888999999999999999999998887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=4.6e-18  Score=144.05  Aligned_cols=171  Identities=7%  Similarity=-0.025  Sum_probs=91.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|++...+..+|..+...|++++|+.+|+++++.. |+   +...|..+|.++...|++++|+..|++++...|++..++
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  444 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY  444 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence            34445555555555555555555555555555555 44   444455555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN------------------------  140 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------  140 (206)
                      ..+|.++...|++++|...|++++..+|+++.++..++.++...++..++...+.+                        
T Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  524 (597)
T 2xpi_A          445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH  524 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence            55555555555555555555555555555554444444444443333332221111                        


Q ss_pred             ---------HHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         141 ---------KVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       141 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                               .+..+|++++. .|.+...+..++.++...|++++|...+
T Consensus       525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL  573 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence                     13446666666 5667777777777777777777777776

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.78  E-value=2.7e-18  Score=143.47  Aligned_cols=166  Identities=14%  Similarity=0.107  Sum_probs=117.2

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|+++..+..+|.++...|++++|+..|+++++.+ |+   +..++..+|.++...|++++|+..|+++++.+|+++.
T Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  379 (537)
T 3fp2_A          304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PE---NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE  379 (537)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            3456666667777777777777777777777777766 66   5666667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH------HHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP------VLSRLFAIV----------TKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------~l~~~~~~~----------~~~~~~~~~~~~~~~~~~  146 (206)
                      +++.+|.++...|++++|...|++++..+|+++....      .++.++...          ++..+        +..+|
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------A~~~~  451 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA--------AIKLL  451 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH--------HHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH--------HHHHH
Confidence            7777777777777777777777777776665544332      223444444          44444        55688


Q ss_pred             HHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         147 KYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      ++++. .|.+...+..++.++...|++++|...+-
T Consensus       452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            88888 78899999999999999999999998883

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.78  E-value=4.7e-17  Score=115.59  Aligned_cols=126  Identities=25%  Similarity=0.408  Sum_probs=114.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      ...+..++.+|..++..|++++|+..|.+++... |+   +..++.++|.++...|++++|+..|++++.++|.++.+++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   85 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   85 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            3568899999999999999999999999999999 98   7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHHHHHH
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQEN  135 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~  135 (206)
                      .+|.++..+|++++|...|++++.++|+++.+...++.+  +...++..++.
T Consensus        86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~  137 (166)
T 1a17_A           86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  137 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888666655  44445555533

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.77  E-value=1.4e-17  Score=119.84  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=128.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++..+|.++..++.+|..+...|++++|+.+++++++.. |+   +..++..+|.++...|++++|+..+++++..+|.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  109 (186)
T 3as5_A           34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN  109 (186)
T ss_dssp             TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh
Confidence            356788899999999999999999999999999999999 98   78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +.+++.+|.++...|++++|...+++++...|+++.+...++.++...++..++        ..++++++.
T Consensus       110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A--------~~~~~~~~~  172 (186)
T 3as5_A          110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA--------LPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH--------HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887774        446666655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=5.9e-18  Score=132.29  Aligned_cols=164  Identities=10%  Similarity=-0.010  Sum_probs=151.5

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      -|.+...++.+|..+...|++++|+..|++++..+ |+   +..+++.+|.++...|++++|+..+++++..+|+.....
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-Cc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence            37788899999999999999999999999999999 99   899999999999999999999999999999999888788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC--hhhhHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP--MDKRVT  161 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~  161 (206)
                      ...+..+...++.++|+..+++++..+|+++.++..++.++...++..+        +...|.+++. .|..  ...+..
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~--------A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEE--------ALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhcccccccchHHHH
Confidence            8888889999999999999999999999999999999999999998888        4558888887 6766  888999


Q ss_pred             HHhhhhHhcccchhhHHHH
Q psy1039         162 AVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~  180 (206)
                      ++.++...|+.++|...+-
T Consensus       261 l~~~~~~~g~~~~a~~~~r  279 (287)
T 3qou_A          261 FQEILAALGTGDALASXYR  279 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHH
Confidence            9999999999999988874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.77  E-value=2.3e-17  Score=128.54  Aligned_cols=106  Identities=26%  Similarity=0.377  Sum_probs=102.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      |.++..++.+|..++..|+|++|+..|++++..+ |+   +..++.++|.++..+|++++|+..|+++++++|+++.+++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5678899999999999999999999999999999 98   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      .+|.++..+|++++|...|++++.++|+++
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999999999774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=9.9e-18  Score=142.31  Aligned_cols=143  Identities=12%  Similarity=0.111  Sum_probs=127.3

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +++.+|+++..++.+|..+...|++++|+..|+++++++ |+   +..++.++|.++..+|++++|+..|+++++++|++
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   90 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH   90 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            467789999999999999999999999999999999999 98   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV---TKRMQENEQLQNKVHNMFKYVFD-TSAP  155 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~  155 (206)
                      ..+++.+|.++..+|++++|...|+++++++|++..+...++.++...   ++..+        +...+++++. .|..
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~--------A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV--------LSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH--------HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH--------HHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999988   77776        4446666666 4443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.7e-18  Score=141.60  Aligned_cols=166  Identities=12%  Similarity=0.098  Sum_probs=152.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|.++..+..+|.++...|++++|+..|++++... |+   +..++..+|.++...|++++|+..|++++..+|+++
T Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  372 (514)
T 2gw1_A          297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP  372 (514)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred             hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence            45678889999999999999999999999999999999 98   788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAI---VTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      .+++.+|.++...|++++|...+++++...|+++.      ++..++.++..   .++...        +..+|++++. 
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------A~~~~~~a~~~  444 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE--------ATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH--------HHHHHHHHHHh
Confidence            99999999999999999999999999999998876      88999999888   888777        4558888887 


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .|.+...+..++.++...|++++|...+
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~  472 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLF  472 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            7888999999999999999999988877

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=8.9e-18  Score=131.49  Aligned_cols=161  Identities=11%  Similarity=0.055  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .+...++.+|..++..|++++|+.+|+++++.+ |+   +..++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   94 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   94 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence            456788999999999999999999999999999 98   88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL--------------SR-LFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +|.++...|++++|...+++++..+|.+......+              +. ++...++..+        +..++++++.
T Consensus        95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------A~~~~~~~~~  166 (327)
T 3cv0_A           95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE--------CRTLLHAALE  166 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH--------HHHHHHHHHh
Confidence            99999999999999999999999999998877666              44 3444444444        3345555555


Q ss_pred             -CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 -TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                       .|.+......++.++...|++++|...+
T Consensus       167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~  195 (327)
T 3cv0_A          167 MNPNDAQLHASLGVLYNLSNNYDSAAANL  195 (327)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence             5666666667777777777776666655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.76  E-value=4.2e-17  Score=109.93  Aligned_cols=119  Identities=28%  Similarity=0.449  Sum_probs=110.6

Q ss_pred             chhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           5 NMND-YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         5 ~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      +|.. +..++.+|..+...|++++|+.+|.+++... |+   +..++..+|.++...|++++|+..|++++..+|.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            4544 7899999999999999999999999999999 98   78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ++.+|.++...|++++|...+++++..+|+++.+...++.++..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999888877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=4.1e-18  Score=133.38  Aligned_cols=166  Identities=10%  Similarity=0.084  Sum_probs=138.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh-------
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-------   74 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-------   74 (206)
                      +..+|+++..+..+|.++...|++++|+.+|+++++.. |+   +..++..+|.++...|++++|+..|++++       
T Consensus        48 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           48 CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            34577888888888888888888888888888888888 87   67778888888777777766666655544       


Q ss_pred             ------------------------------------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039          75 ------------------------------------------EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (206)
Q Consensus        75 ------------------------------------------~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  112 (206)
                                                                +.+|.++.+++.+|.++...|++++|...+++++..+|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  203 (327)
T 3cv0_A          124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP  203 (327)
T ss_dssp             TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                                                      45566777888999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         113 TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +++.++..++.++...++..+        +..+|++++. .|.+...+..++.++...|++++|...+
T Consensus       204 ~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  263 (327)
T 3cv0_A          204 DDAQLWNKLGATLANGNRPQE--------ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL  263 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999999999988887777        4458888877 7888889999999999999999998887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=1.1e-17  Score=131.67  Aligned_cols=166  Identities=11%  Similarity=0.058  Sum_probs=129.6

Q ss_pred             cccchhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFK-------QGDY-------ETALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV   66 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A   66 (206)
                      +..+|+++..|+..|..+..       .|++       ++|+..|+++++ +. |+   +..+|..+|..+...|++++|
T Consensus        43 l~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~---~~~~~~~~~~~~~~~~~~~~A  118 (308)
T 2ond_A           43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence            45678889999999988874       4775       889999999998 68 87   788899999999999999999


Q ss_pred             HHHHHHHhhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1039          67 IEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI-VTKRMQENEQLQNKVHN  144 (206)
Q Consensus        67 ~~~~~~al~l~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~  144 (206)
                      ...|+++++++|.++. +|..+|.++...|++++|...|+++++.+|.+..++...+.+... .++...        +..
T Consensus       119 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~--------A~~  190 (308)
T 2ond_A          119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV--------AFK  190 (308)
T ss_dssp             HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH--------HHH
T ss_pred             HHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH--------HHH
Confidence            9999999999998886 889999999899999999999999998888876665544433221 233333        445


Q ss_pred             HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .|++++. .|.+...+...+..+...|+++.|...+
T Consensus       191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  226 (308)
T 2ond_A          191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  226 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777766 5777777888888887778777776665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.76  E-value=3.8e-17  Score=132.27  Aligned_cols=126  Identities=29%  Similarity=0.515  Sum_probs=117.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------ccccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALK----------------VTAEESHERATCLKNRAAVYLKQNQNDKVIED   69 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~   69 (206)
                      ...+..+..+|..++..|+|++|+..|+++++                .. |.   ...++.++|.+++.+|++++|+.+
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~---~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PV---ALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HH---HHHHHHHHHHHHHhccCHHHHHHH
Confidence            35577899999999999999999999999999                55 65   789999999999999999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy1039          70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        70 ~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  135 (206)
                      |+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.+...++.++..+++..++.
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888776644

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.76  E-value=1.4e-18  Score=138.98  Aligned_cols=137  Identities=30%  Similarity=0.446  Sum_probs=97.2

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-----------------HHHHHHHHHHHHccCHHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-----------------TCLKNRAAVYLKQNQNDKV   66 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-----------------~~~~~la~~~~~~~~~~~A   66 (206)
                      ..+..+..++.+|..++..|+|++|+.+|.+++.+. |+   +.                 .++.++|.|+..+|+|++|
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~---~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GD---DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CH---HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cc---chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            457789999999999999999999999999999999 87   44                 4899999999999999999


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        67 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                      +.+|+++++++|++..+++++|.++..+|++++|+..|++++.++|+++.+...++.+........+       ....+|
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~-------~a~~~~  322 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ-------KQKEMY  322 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888654443322       134577


Q ss_pred             HHhcC
Q psy1039         147 KYVFD  151 (206)
Q Consensus       147 ~~~~~  151 (206)
                      ++++.
T Consensus       323 ~~~l~  327 (338)
T 2if4_A          323 KGIFK  327 (338)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            77776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.76  E-value=1.4e-17  Score=124.03  Aligned_cols=140  Identities=16%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             cccchhhHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH
Q psy1039           2 IDNNMNDYNKLKE----------------SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK   65 (206)
Q Consensus         2 l~~~p~~~~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~   65 (206)
                      +..+|+++.+++.                +|.++...|++++|+..|+++++++ |+   +..+++++|.++...|++++
T Consensus        31 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~  106 (208)
T 3urz_A           31 IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN---NVDCLEACAEMQVCRGQEKD  106 (208)
T ss_dssp             HHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHH
Confidence            5678999999999                9999999999999999999999999 99   89999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGK--FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        66 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                      |+..|+++++++|+++.+++.+|.++...|+  ...+...+.+++...|. ..+....+......++..+        +.
T Consensus       107 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~--------A~  177 (208)
T 3urz_A          107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEK--------AR  177 (208)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHH--------HH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHH--------HH
Confidence            9999999999999999999999999988765  45567777777643332 2345556666666666666        66


Q ss_pred             HHHHHhcC-CCC
Q psy1039         144 NMFKYVFD-TSA  154 (206)
Q Consensus       144 ~~~~~~~~-~~~  154 (206)
                      .+|++++. .|.
T Consensus       178 ~~~~~al~l~P~  189 (208)
T 3urz_A          178 NSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHTTTSCC
T ss_pred             HHHHHHHHhCCC
Confidence            69999998 453

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.76  E-value=3.2e-17  Score=112.09  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFR   86 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~   86 (206)
                      ..++.+|..++..|+|++|+..|++++... |+.+....+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            457899999999999999999999999999 9844444899999999999999999999999999999999   899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      +|.++..+|++++|...|++++...|+++.+......+..
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            9999999999999999999999999999888776665543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.76  E-value=2.5e-17  Score=112.11  Aligned_cols=120  Identities=27%  Similarity=0.342  Sum_probs=111.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-----   80 (206)
                      |..+..++.+|..++..|++++|+.+|.+++... |+   +..++..+|.++...|++++|+.+|++++.+.|.+     
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4578899999999999999999999999999999 98   78999999999999999999999999999999877     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                        +.+++.+|.++...|++++|...|++++...| ++.....++.+...+++
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence              89999999999999999999999999999999 68888888887766554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.76  E-value=1.1e-16  Score=118.57  Aligned_cols=146  Identities=15%  Similarity=0.151  Sum_probs=127.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      ...+..++.+|..++..|++++|+..|++++  . |+    +.+++++|.++...|++++|+..|++++.++|.++.+++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   75 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            3466788999999999999999999999995  4 64    679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNK----------------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      .+|.++..+|++++|+..|++++.+.|++.                .++..++.++...++...        +..+|+++
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------A~~~~~~a  147 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK--------AEEQLALA  147 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH--------HHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH--------HHHHHHHH
Confidence            999999999999999999999999999887                899999999999888887        55588888


Q ss_pred             cC-CCCChhhhHHHHhhh
Q psy1039         150 FD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~  166 (206)
                      +. .|.........+...
T Consensus       148 l~~~p~~~~~~~~~a~~~  165 (213)
T 1hh8_A          148 TSMKSEPRHSKIDKAMEC  165 (213)
T ss_dssp             HTTCCSGGGGHHHHHHHH
T ss_pred             HHcCcccccchHHHHHHH
Confidence            88 565544444433333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.75  E-value=3.7e-17  Score=118.20  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH-HHHccCH--HHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-YLKQNQN--DKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~l~p   78 (206)
                      +..+|+++..++.+|.+++..|++++|+.+|++++.++ |+   +..++..+|.+ +...|++  ++|+..|++++.++|
T Consensus        37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           37 IRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GE---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CS---CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence            45688999999999999999999999999999999999 98   78999999999 8899999  999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      +++.+++.+|.++...|++++|...|++++.++|+++.....+..+.
T Consensus       113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999987665554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=3e-17  Score=137.09  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      +.++..+|..+...|++++|+..|++++..+ |+    ...+..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH-PT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            4578899999999999999999999999999 97    678999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhh
Q psy1039          89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV  167 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (206)
                      .++...|++++|+..|++++..+|+++.++..++.++...++...        +..+|++++. .|.+...+...+.++.
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE--------SEAFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888        4558888888 7888999999999999


Q ss_pred             HhcccchhhHHH
Q psy1039         168 VLAREMSGAEML  179 (206)
Q Consensus       168 ~~~~~~~a~~~~  179 (206)
                      ..|++++|...+
T Consensus       390 ~~g~~~~A~~~~  401 (537)
T 3fp2_A          390 DRGDFDTAIKQY  401 (537)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            999999999988

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=3.8e-17  Score=138.43  Aligned_cols=173  Identities=14%  Similarity=0.078  Sum_probs=151.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|++...+..++..+...|++++|+..+.+++... |+   +...+..+|.+|...|++++|+..|+++++++|.+..
T Consensus       333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  408 (597)
T 2xpi_A          333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP  408 (597)
T ss_dssp             HHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence            4568888899999999999999999999999999999 98   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN----------------------  140 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------  140 (206)
                      +|..+|.++...|++++|++.|++++...|++..++..++.++...++..++...+.+                      
T Consensus       409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998887776665443321                      


Q ss_pred             ----HHHHHHHHhcC-------CCCC-hhhhHHHHhhhhHhcccchhhHHH
Q psy1039         141 ----KVHNMFKYVFD-------TSAP-MDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       141 ----~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                          .+..+|++++.       .|.. ...+..++.++...|++++|...+
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~  539 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL  539 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                24566666654       2222 678889999999999999998887

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=4.9e-17  Score=127.42  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=132.9

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|+++..++.+|.++...|++++|+..|++      |+   +..++..+|.++..+|++++|+..|+++++++|++....
T Consensus        97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~  167 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD---SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ  167 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence            588899999999999999999999998887      33   577889999999999999999999999999999886554


Q ss_pred             HHHH--HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          85 FRRC--QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        85 ~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      +..|  ..+...|++++|...|++++..+|+++.++..++.++...++..+        +...|++++. .|.+...+..
T Consensus       168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~e--------A~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA--------AEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHH
Confidence            4434  233345889999999999999999999999999999999888888        5558888888 8899999999


Q ss_pred             HHhhhhHhcccchhhHHH
Q psy1039         162 AVNNLVVLAREMSGAEML  179 (206)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~  179 (206)
                      ++.++...|+.++++..+
T Consensus       240 l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHH
Confidence            999999999987765444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=4.4e-17  Score=128.27  Aligned_cols=174  Identities=8%  Similarity=-0.071  Sum_probs=150.4

Q ss_pred             cc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039           2 ID-NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         2 l~-~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      +. .+|++...|...|..+...|++++|...|++++++. |.   +.. +|.++|.++...|++++|+..|+++++.+|.
T Consensus        91 l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A           91 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            45 589999999999999999999999999999999999 97   565 8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-
Q psy1039          80 DPKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----TS-  153 (206)
Q Consensus        80 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-  153 (206)
                      +..+|...+..... .|++++|...|++++..+|+++.++..++.+....++..+        +..+|++++.    +| 
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~--------A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHSSSSCGG
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhccCCCHH
Confidence            98888877766443 7999999999999999999999999999999888777766        5568888887    23 


Q ss_pred             CChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhc
Q psy1039         154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .....+...+..+...|+.+.|...+      .+..+...
T Consensus       239 ~~~~l~~~~~~~~~~~g~~~~a~~~~------~~a~~~~p  272 (308)
T 2ond_A          239 KSGEIWARFLAFESNIGDLASILKVE------KRRFTAFR  272 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHH------HHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHcc
Confidence            35678888999999999998888776      45544444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.74  E-value=1.2e-17  Score=110.80  Aligned_cols=108  Identities=13%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DP   81 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~   81 (206)
                      .+|+++..++.+|..++..|++++|+.+|+++++.. |+   ...++.++|.++...|++++|+..|+++++++|.  +.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            368888999999999999999999999999999999 98   7889999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q psy1039          82 KALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        82 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~  115 (206)
                      .+++.+|.++..+ |++++|.+.+++++...|.++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999999999 999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.74  E-value=1.7e-17  Score=117.40  Aligned_cols=117  Identities=5%  Similarity=-0.054  Sum_probs=106.8

Q ss_pred             HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ..|++++.++ |+   +...++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.
T Consensus         8 ~~~~~al~~~-p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            8 GTIAMLNEIS-SD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CSHHHHTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCC-Hh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4688999999 98   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus       110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      ++|+++.++..++.++..+++..+        +...|++++. .|.+...
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAE--------AESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHTTCGGG
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHH--------HHHHHHHHHHHCcCCCcc
Confidence            999999999999999999999888        4458888877 4544433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.74  E-value=1.2e-16  Score=108.90  Aligned_cols=130  Identities=25%  Similarity=0.394  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      .+++.+|..+...|++++|+..|++++... |+   +...+..+|.++...|++++|+..+++++...|.++.+++.+|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Cc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            568899999999999999999999999999 88   78899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        90 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++...|++++|...+++++...|.++.+...++.++...++..+        +..++++++.
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--------A~~~~~~~~~  131 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE--------AIEYYQKALE  131 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH--------HHHHHHHHHc
Confidence            99999999999999999999999999999999999888877777        4446666655

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.73  E-value=4.2e-17  Score=124.81  Aligned_cols=175  Identities=16%  Similarity=0.124  Sum_probs=142.5

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----   76 (206)
                      +|..+..+..+|.+++..|++++|+.+|.+++.+..    ++.+....++.++|.++...|++++|+..|++++.+    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            488899999999999999999999999999998720    112337889999999999999999999999999988    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          77 ----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN  144 (206)
Q Consensus        77 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  144 (206)
                          +|....+++.+|.++...|++++|...+++++.+        .|....+...++.++...++..++...+.+....
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                5777889999999999999999999999999998        6677788899999999988888766533333221


Q ss_pred             H-----------------------------------------HHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         145 M-----------------------------------------FKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       145 ~-----------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .                                         ++.... .|........++.++...|++++|...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  275 (283)
T 3edt_B          199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE  275 (283)
T ss_dssp             HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            1                                         111111 2344566778899999999999998887

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.73  E-value=7.9e-17  Score=136.78  Aligned_cols=146  Identities=12%  Similarity=0.004  Sum_probs=120.1

Q ss_pred             cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1039          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY  101 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~  101 (206)
                      .|++++|+..|+++++.+ |+   +..++..+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             --------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            478999999999999999 98   89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh---cccchhhH
Q psy1039         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL---AREMSGAE  177 (206)
Q Consensus       102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~a~~  177 (206)
                      ..|+++++++|++..++..++.++...++..+        +..+|++++. .|.+......++.++...   |++++|..
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEA--------AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999988888        4558888888 788899999999999999   88898888


Q ss_pred             HH
Q psy1039         178 ML  179 (206)
Q Consensus       178 ~~  179 (206)
                      .+
T Consensus       150 ~~  151 (568)
T 2vsy_A          150 QV  151 (568)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=7.5e-17  Score=133.75  Aligned_cols=162  Identities=14%  Similarity=0.063  Sum_probs=152.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|.++..++.+|..++..|++++|+..|++++... |+    ..++..+|.++...|++++|+..|++++.++|.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  307 (514)
T 2gw1_A          233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY  307 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH
Confidence            48889999999999999999999999999999999 87    78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV  163 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  163 (206)
                      +.+|.++...|++++|...+++++..+|+++.++..++.++...++...        +..+|++++. .|.+...+...+
T Consensus       308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~la  379 (514)
T 2gw1_A          308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD--------CETLFSEAKRKFPEAPEVPNFFA  379 (514)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH--------HHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHHcccCHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888777        4458888777 788889999999


Q ss_pred             hhhhHhcccchhhHHH
Q psy1039         164 NNLVVLAREMSGAEML  179 (206)
Q Consensus       164 ~~~~~~~~~~~a~~~~  179 (206)
                      .++...|++++|...+
T Consensus       380 ~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          380 EILTDKNDFDKALKQY  395 (514)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHH
Confidence            9999999999999888

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=1e-18  Score=139.72  Aligned_cols=148  Identities=12%  Similarity=0.131  Sum_probs=135.5

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHH
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALF   85 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~   85 (206)
                      ..+++++|+..|++++... |+   .+..+.++|.+++..|+|++|+..|++++.++|.+               ..+++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~-p~---~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  200 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK-LE---QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL  200 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH-HH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH-HH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence            4566778888888888888 87   89999999999999999999999999999999999               69999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHh
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVN  164 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  164 (206)
                      ++|.++..+|++++|+..|++++.++|+++.++..++.++..+++...        +...|++++. .|.+...+..++.
T Consensus       201 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL--------ARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888        5558999888 7899999999999


Q ss_pred             hhhHhcccchhhHHHH
Q psy1039         165 NLVVLAREMSGAEMLL  180 (206)
Q Consensus       165 ~~~~~~~~~~a~~~~~  180 (206)
                      ++...+++++|...++
T Consensus       273 ~~~~~~~~~~a~~~~~  288 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLY  288 (336)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999987765544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.71  E-value=4.8e-16  Score=116.96  Aligned_cols=141  Identities=12%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH------------------ccCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK------------------QNQNDKVIE   68 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~------------------~~~~~~A~~   68 (206)
                      ....+++.+|.+++..|+|++|+..|+++++.. |+.+....+++.+|.++..                  .|++++|+.
T Consensus        39 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           39 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            346899999999999999999999999999999 9744445689999999986                  579999999


Q ss_pred             HHHHHhhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHH
Q psy1039          69 DCSKSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIV  128 (206)
Q Consensus        69 ~~~~al~l~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~  128 (206)
                      .|+++++.+|+++.++                 +.+|.++...|++++|+..|+++++..|+++   .+...++.++..+
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            9999999999987654                 6789999999999999999999999999986   6788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039         129 TKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                      ++...        +...++++.. .|.+.
T Consensus       198 g~~~~--------A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          198 QMNAQ--------AEKVAKIIAANSSNTL  218 (225)
T ss_dssp             TCHHH--------HHHHHHHHHHCCSCCC
T ss_pred             CCcHH--------HHHHHHHHHhhCCCch
Confidence            88887        4447777766 45443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=5.7e-16  Score=118.53  Aligned_cols=153  Identities=16%  Similarity=0.108  Sum_probs=129.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g   95 (206)
                      ..+...|++++|+..|+++++.. |. .+..+.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.++...|
T Consensus        13 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           13 VPLQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eccCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            33445689999999999999984 32 23378999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccch
Q psy1039          96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS  174 (206)
Q Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  174 (206)
                      ++++|...|++++.++|+++.++..++.++...++..+        +..+|++++. .|.+.......+ .....|++++
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~--------A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~  162 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL--------AQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQ  162 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHH--------HHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHH
Confidence            99999999999999999999999999999999888887        4458888877 566654444333 4466688888


Q ss_pred             hhHHH
Q psy1039         175 GAEML  179 (206)
Q Consensus       175 a~~~~  179 (206)
                      |...+
T Consensus       163 A~~~~  167 (275)
T 1xnf_A          163 AKEVL  167 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=1e-16  Score=112.18  Aligned_cols=118  Identities=8%  Similarity=-0.044  Sum_probs=103.6

Q ss_pred             HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        30 ~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ..|.+++.++ |+   +...++.+|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.
T Consensus         5 ~~l~~al~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A            5 GTLAMLRGLS-ED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             ----CCTTCC-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCC-HH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4678888888 88   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus       110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ++|+++.++..++.++..+++..+        +..+|++++. .|.+....
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDG--------AESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHTCGGGH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCcchH
Confidence            999999999999999999999888        4447777776 45444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=1.2e-15  Score=119.40  Aligned_cols=158  Identities=11%  Similarity=0.088  Sum_probs=134.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKV--TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      +|....++..++..+...|++++|+..+++.+..  + |+   ++.+++.+|.++...|++++|+..|++     |+++.
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~-P~---~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~  131 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD-VT---NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE  131 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH
Confidence            4557788999999999999999999999998864  6 87   788999999999999999999999988     89999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS--RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ++..+|.++..+|++++|.+.+++++..+|++.......+  .+....++..+        +..+|++++. .|.+...+
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e--------A~~~~~~~l~~~p~~~~~~  203 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD--------AYYIFQEMADKCSPTLLLL  203 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH--------HHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH--------HHHHHHHHHHhCCCcHHHH
Confidence            9999999999999999999999999999999764333222  22212234444        5568888888 78999999


Q ss_pred             HHHHhhhhHhcccchhhHHH
Q psy1039         160 VTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       160 ~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..++.++...|++++|...+
T Consensus       204 ~~la~~~~~~g~~~eA~~~l  223 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVL  223 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999888

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=5.9e-16  Score=121.02  Aligned_cols=165  Identities=11%  Similarity=0.008  Sum_probs=129.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhhCCCC-
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVPDD-   80 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~-   80 (206)
                      +..+.++.++|.++...|++++|+.+|++++.+. |.   ....+.++.++|.+|... |++++|+.+|++++++.|.+ 
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~  152 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence            3457899999999999999999999999999998 63   122367899999999996 99999999999999998864 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-------IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (206)
Q Consensus        81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (206)
                           ..++.++|.++..+|++++|+..|++++.+.|++..       +...++.++..+++...        +..+|++
T Consensus       153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~  224 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA--------AARTLQE  224 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH--------HHHHHHG
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH--------HHHHHHH
Confidence                 567899999999999999999999999999998764       45777888888777777        5559999


Q ss_pred             hcC-CCCChhh-----hHHHHhhhh--HhcccchhhHHH
Q psy1039         149 VFD-TSAPMDK-----RVTAVNNLV--VLAREMSGAEML  179 (206)
Q Consensus       149 ~~~-~~~~~~~-----~~~~~~~~~--~~~~~~~a~~~~  179 (206)
                      ++. .|.....     ...++..+.  ..+++.+|+..+
T Consensus       225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~  263 (292)
T 1qqe_A          225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (292)
T ss_dssp             GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            988 4543332     222333332  345567777777

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.69  E-value=8.4e-17  Score=108.97  Aligned_cols=95  Identities=15%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             HcCCHHHHHHHHHHHHhc---cccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCH
Q psy1039          21 KQGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF   97 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~   97 (206)
                      ..|++++|+.+|++++++   + |+   +..++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQG-KD---LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCC-cc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence            468999999999999999   5 66   8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHH
Q psy1039          98 EEAYTDAKHIHRVEPTNKAIQP  119 (206)
Q Consensus        98 ~~A~~~~~~al~~~p~~~~~~~  119 (206)
                      ++|+..+++++...|+++.+..
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHH
Confidence            9999999999999999987643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=3.3e-16  Score=121.68  Aligned_cols=176  Identities=16%  Similarity=0.143  Sum_probs=142.7

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--   77 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--   77 (206)
                      .+|..+..+..+|.++...|++++|+.+|++++.+..    ++.+....++..+|.++...|++++|+..|++++.+.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999998730    1113378899999999999999999999999999884  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          78 ------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        78 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                            |....+++.+|.++...|++++|...+++++.+        .|....+...++.++...++..++...+.+...
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  566788999999999999999999999999998        666778888999999988888876653333322


Q ss_pred             H-----------------------------------------HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         144 N-----------------------------------------MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       144 ~-----------------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .                                         .++.+.. .|........++.++...|++++|...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            1                                         1222222 3556777888999999999999999888

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.69  E-value=4.8e-17  Score=135.81  Aligned_cols=125  Identities=25%  Similarity=0.418  Sum_probs=115.9

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .+..+..++.+|..++..|+|++|+..|+++++++ |+   +..++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   77 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   77 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45677888999999999999999999999999999 98   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHHHH
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL--FAIVTKRMQ  133 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~  133 (206)
                      +++|.++..+|++++|.+.|+++++++|++..+...++.+  +...++..+
T Consensus        78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~  128 (477)
T 1wao_1           78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER  128 (477)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888  444455444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.68  E-value=7.2e-16  Score=120.54  Aligned_cols=164  Identities=8%  Similarity=0.033  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-----   80 (206)
                      ...+...|.++...|+|++|+.+|.+++++. +   +....+.++.++|.+|..+|++++|+.+|++++.+.|..     
T Consensus        37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3456777889999999999999999999985 4   222347889999999999999999999999999998754     


Q ss_pred             -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          81 -PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        81 -~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                       ..++.++|.++... |++++|+.+|++++.+.|++      ..+...++.++...++..+        +..+|++++. 
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~  187 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE--------ASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHHH
Confidence             56899999999996 99999999999999998865      3557778888888887777        5558888887 


Q ss_pred             CCCChh-------hhHHHHhhhhHhcccchhhHHHHh
Q psy1039         152 TSAPMD-------KRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       152 ~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      .|....       ....++.++..+|++++|...+-+
T Consensus       188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  224 (292)
T 1qqe_A          188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (292)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            443332       457789999999999999888754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.68  E-value=4e-16  Score=112.99  Aligned_cols=131  Identities=11%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH-HHHccCHHHHHHHHHHHhhhCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-YLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      ++..+|+++.+++.+|.++...|++++|+..|++++... |+    +..+..++.+ +...+...+|+..++++++++|+
T Consensus        32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~  106 (176)
T 2r5s_A           32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-QD----NSYKSLIAKLELHQQAAESPELKRLEQELAANPD  106 (176)
T ss_dssp             SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-CC----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred             HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-CC----hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence            467899999999999999999999999999999999998 84    2333334433 22334555689999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ++.+++.+|.++...|++++|+..|++++..+|+.  +.++..++.++...++...+..
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            99999999999999999999999999999999986  5599999999998887776443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=3.2e-16  Score=122.41  Aligned_cols=131  Identities=11%  Similarity=-0.015  Sum_probs=122.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++.+++.+|.++...|++++|+..|++++..+ |+   ........+..+...++..+|+..|++++..+|+++
T Consensus       144 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~---~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~  219 (287)
T 3qou_A          144 WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QD---TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA  219 (287)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CS---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH
T ss_pred             HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cc---hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH
Confidence            56789999999999999999999999999999999999 98   777788888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      .+++.+|.++...|++++|...|++++..+|++  ..++..++.++..+++...+..
T Consensus       220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS  276 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence            999999999999999999999999999999998  8899999999998887666444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=5.4e-16  Score=127.87  Aligned_cols=170  Identities=14%  Similarity=0.039  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--------EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-   77 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-   77 (206)
                      ..+..+..+|.++...|++++|+++|++|+++..        |.   ....|.++|.+|..+|++++|+.+|++++.+. 
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~---~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR---SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT---THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            3456778899999999999999999999998731        33   57789999999999999999999999998873 


Q ss_pred             -------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH-----------
Q psy1039          78 -------PDDPKALFRRCQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQ-----------  137 (206)
Q Consensus        78 -------p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-----------  137 (206)
                             +..+.++..+|.++...|  +|++|+.+|++++.++|+++.+...++.+...++...+....           
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence                   456788888888877654  699999999999999999999998888876655443211110           


Q ss_pred             ----------------------HHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         138 ----------------------LQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       138 ----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                                            ....+..++++++. .|........++.++...|++++|...+
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  270 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL  270 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence                                  00113445555555 5666666666666666666666666666

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.68  E-value=1.3e-16  Score=113.10  Aligned_cols=101  Identities=19%  Similarity=0.145  Sum_probs=91.5

Q ss_pred             HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN----------DKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        20 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      -+.+.|++|+..|+++++++ |+   ++..|+++|.++...+++          ++|+..|+++++++|++..+|+++|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34567999999999999999 99   899999999999999876          59999999999999999999999999


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          90 AYEAIG-----------KFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        90 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      +|..+|           ++++|+++|+++++++|++......+..+
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999885           89999999999999999998766655433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.68  E-value=2.9e-15  Score=115.30  Aligned_cols=156  Identities=12%  Similarity=0.065  Sum_probs=108.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCC
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~   80 (206)
                      +|+++.+++.+|..++..|++++|+.+|+++++.+      +..+++++|.++..    .+++++|+.+|+++++++  +
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~   73 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y   73 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C
Confidence            46777788888888888888888888888887743      35677778888888    888888888888887775  6


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1039          81 PKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFDT  152 (206)
Q Consensus        81 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      +.+++.+|.++..    .+++++|+..|++++..  +++.+...++.++..    .++..+        +..+|++++..
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~--------A~~~~~~a~~~  143 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKK--------AVEYFTKACDL  143 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHH--------HHHHHHHHHhc
Confidence            7788888888888    88888888888888776  367777777777766    555555        33355555552


Q ss_pred             CCChhhhHHHHhhhhH----hcccchhhHHH
Q psy1039         153 SAPMDKRVTAVNNLVV----LAREMSGAEML  179 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~----~~~~~~a~~~~  179 (206)
                       .+......++.++..    .+++++|...+
T Consensus       144 -~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  173 (273)
T 1ouv_A          144 -NDGDGCTILGSLYDAGRGTPKDLKKALASY  173 (273)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence             244555556666655    55555555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=121.86  Aligned_cols=177  Identities=18%  Similarity=0.145  Sum_probs=142.3

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+..+|..++..|++++|+.+|++++++..    ++.+....++..+|.++...|++++|+..|++++.+   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999620    112237889999999999999999999999999988   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVH  143 (206)
Q Consensus        77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  143 (206)
                           +|....+++.+|.++...|++++|...+++++.+.        |....+...++.++...++...+...+. .+.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-~a~  180 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-RAL  180 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence                 45667899999999999999999999999999874        4556777888888888887777544222 222


Q ss_pred             HHHHHhcC--CCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         144 NMFKYVFD--TSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      ..++....  .+........++.++...|++++|...+-+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33333322  344566788899999999999999988843

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.67  E-value=9.5e-16  Score=123.73  Aligned_cols=161  Identities=12%  Similarity=0.075  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-------HH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-------PK   82 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~   82 (206)
                      ++..|..++..|++++|+.+|++++.+..  |+....+.++.++|.++..+|++++|+.++++++.+.+..       ..
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            44599999999999999999999999831  3444478899999999999999999999999999985443       45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-----  151 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  151 (206)
                      ++..+|.++..+|++++|...|++++.+.|...      .+...++.++...++..++..        +|++++.     
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~--------~~~~al~~~~~~  257 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP--------YFKRAIAVFEES  257 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHhh
Confidence            899999999999999999999999999876544      478888999988888877544        4444443     


Q ss_pred             -C-CCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         152 -T-SAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       152 -~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                       . |........++.++...|++++|...+-
T Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  288 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHS  288 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             2 5567778899999999999999998883

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.2e-15  Score=124.16  Aligned_cols=175  Identities=9%  Similarity=0.021  Sum_probs=131.4

Q ss_pred             cccchhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHh
Q psy1039           2 IDNNMNDYNKLKESGNSAFK---QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSL   74 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al   74 (206)
                      +..+|+++..+..+|.+++.   .|++++|+..|+++++++ |+   +..++..+|..+...    |++++|+..+++++
T Consensus       165 l~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~---~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al  240 (472)
T 4g1t_A          165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD---NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL  240 (472)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS---CHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc---chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34556666666666665443   345566666666666666 66   566677777665544    56789999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy1039          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE-----------NEQLQNKVH  143 (206)
Q Consensus        75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~  143 (206)
                      .++|+++.++..+|.++...|++++|+..++++++.+|++..++..++.++.........           .......+.
T Consensus       241 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  320 (472)
T 4g1t_A          241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV  320 (472)
T ss_dssp             HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred             HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999999999999999887654332111           111223466


Q ss_pred             HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      .+|+++.. .|........++.++...|++++|...+-
T Consensus       321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  358 (472)
T 4g1t_A          321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ  358 (472)
T ss_dssp             HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence            78888888 78888889999999999999999988773

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=2.7e-16  Score=113.59  Aligned_cols=127  Identities=11%  Similarity=0.120  Sum_probs=112.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH-HHHcCC
Q psy1039          18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA-YEAIGK   96 (206)
Q Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~-~~~~g~   96 (206)
                      .+...|++++|+..|++++..+ |+   +..++..+|.++...|++++|+..|++++.++|+++.+++.+|.+ +...|+
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~   94 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ   94 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHC-CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred             hhhhccCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence            3567899999999999999999 98   889999999999999999999999999999999999999999999 889999


Q ss_pred             H--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039          97 F--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (206)
Q Consensus        97 ~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                      +  ++|...+++++..+|+++.++..++.++...++...        +..+|++++. .|.+.
T Consensus        95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQ--------AIELWQKVMDLNSPRI  149 (177)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTCCTTS
T ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH--------HHHHHHHHHhhCCCCc
Confidence            9  999999999999999999999999999999888887        5558888877 45443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.66  E-value=2.1e-16  Score=116.42  Aligned_cols=155  Identities=10%  Similarity=0.046  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH--------
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP--------   81 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~--------   81 (206)
                      ......+......|++++|.+.|....... +.   .+..+..+|.+++..|+|++|+..|++++.+.|.++        
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEK-VQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -----------------CCCSGGGCCHHHH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHH-HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            344455666777788888888887766655 55   788899999999999999999999999999999887        


Q ss_pred             --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q psy1039          82 --------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T  152 (206)
Q Consensus        82 --------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (206)
                              .+++++|.++..+|++++|+..+++++.++|++..++..++.++..+++...        +..+|++++. .
T Consensus        81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~--------A~~~~~~al~~~  152 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE--------AKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHH--------HHHHHHHHHHHC
Confidence                    8999999999999999999999999999999999999999999999998888        5558888888 7


Q ss_pred             CCChhhhHHHHhhhhHhcccchhh
Q psy1039         153 SAPMDKRVTAVNNLVVLAREMSGA  176 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~  176 (206)
                      |.+...+..++.++...++..++.
T Consensus       153 p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          153 PNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998876555

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=2.1e-15  Score=122.14  Aligned_cols=172  Identities=13%  Similarity=0.128  Sum_probs=140.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP   78 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p   78 (206)
                      +..+..++.+|..++..|++++|+.+|+++++.. |+. .....++..+|.++...|++++|+..|++++.+      .|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            6778889999999999999999999999999999 862 223468999999999999999999999999988      67


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHH-----------------HHHHH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV------EPTNKAIQPVLSRLFAIVTK-----------------RMQEN  135 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~~~  135 (206)
                      ....+++.+|.++...|++++|...+++++.+      .|....+...++.++...++                 ...+.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~  203 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV  203 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence            77889999999999999999999999999998      45566788889999988888                 55533


Q ss_pred             HHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         136 EQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .. ...+..++....+.+........++.++...|++++|...+
T Consensus       204 ~~-~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          204 EF-YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            31 11222233333223444567788999999999999988887

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.8e-15  Score=103.31  Aligned_cols=113  Identities=12%  Similarity=0.110  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..+..+|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhh
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNL  166 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~  166 (206)
                      ..+++..++        ...|++++. .      |.+...+..+..+.
T Consensus        83 ~~~~~~~~A--------~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASA--------LETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHH--------HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHH--------HHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            999988884        447777666 4      66666666555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=3.4e-15  Score=117.61  Aligned_cols=173  Identities=9%  Similarity=-0.032  Sum_probs=145.8

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH----HHc---cCHHHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVY----LKQ---NQNDKVIEDCS   71 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~   71 (206)
                      +|..+|++..+|+.+|.++...|  ++++++.++..++..+ |.   +..+|..++.++    ...   +++.+++..+.
T Consensus        59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk---~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EK---NYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TT---CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cc---cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            36789999999999999999999  9999999999999999 98   899999999999    777   78999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039          72 KSLEIVPDDPKALFRRCQAYEAIGKFE--EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        72 ~al~l~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      ++++.+|.+..+|+.++.++..+|.++  +++..+.++++.+|.|-.++...+.+...++....  .........+++++
T Consensus       135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~--~~~~~eEl~~~~~a  212 (306)
T 3dra_A          135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT--DNTIDEELNYVKDK  212 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC--HHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch--hhhHHHHHHHHHHH
Confidence            999999999999999999999999998  99999999999999999999999888876654100  00111244577777


Q ss_pred             cC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         150 FD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +. .|.+...+.-...++...|+..+++..+
T Consensus       213 I~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~  243 (306)
T 3dra_A          213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEF  243 (306)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred             HHhCCCCccHHHHHHHHHHhcCCChHHHHHH
Confidence            77 7888888888888888888865555444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.65  E-value=1.3e-14  Score=111.71  Aligned_cols=155  Identities=12%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhC
Q psy1039           6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~   77 (206)
                      |+++.+++.+|..+..    .|++++|+.+|+++++.+      ++.+++++|.++..    .+++++|+.+|++++..+
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            5667788888888888    888888888888888876      46778888888888    888888888888888764


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q psy1039          78 PDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        78 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                        ++.+++.+|.++..    .+++++|+..|+++++.+  ++.+...++.++..    .++..+        +..+|+++
T Consensus       109 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~--------A~~~~~~a  176 (273)
T 1ouv_A          109 --YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKK--------ALASYDKA  176 (273)
T ss_dssp             --CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHH
T ss_pred             --CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHH
Confidence              77888888888888    888888888888888765  56677777777665    455444        33466666


Q ss_pred             cCCCCChhhhHHHHhhhhH----hcccchhhHHH
Q psy1039         150 FDTSAPMDKRVTAVNNLVV----LAREMSGAEML  179 (206)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~  179 (206)
                      ++. .+......++.++..    .+++++|...+
T Consensus       177 ~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  209 (273)
T 1ouv_A          177 CDL-KDSPGCFNAGNMYHHGEGATKNFKEALARY  209 (273)
T ss_dssp             HHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             HHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            552 345566667777776    66666666665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=8.4e-15  Score=108.40  Aligned_cols=105  Identities=12%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH------
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~------   81 (206)
                      ++..++.+|.+++..|++++|+..|++++.++ |+   +..+++++|.++...|++++|+..|++++++.|.+.      
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            57899999999999999999999999999999 98   889999999999999999999999999999988877      


Q ss_pred             ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          82 ----------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        82 ----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                                .+++.+|.++..+|++++|...|++++.++|++..
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                      99999999999999999999999999999998743

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.64  E-value=3.2e-15  Score=102.82  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+.++.++|.++++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|++......++.++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999998876555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..++......+.++ .+..+|++++.
T Consensus        87 ~~lg~~~~~~~~~~-~A~~~~~kal~  111 (127)
T 4gcn_A           87 SRAGNAFQKQNDLS-LAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence            54444333332222 14557777766

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.64  E-value=1.5e-16  Score=132.02  Aligned_cols=148  Identities=11%  Similarity=0.113  Sum_probs=131.2

Q ss_pred             cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHHH
Q psy1039          22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFR   86 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~   86 (206)
                      .+++++|+..|.+++... |+   .+..+.++|.+++..|+|.+|+..|++++.++|.+               ..+|++
T Consensus       247 l~~~~~A~~~~~~~~~~~-~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEK-LE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEECCCCGGGSCHHHH-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHH-HH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            446677888888888888 87   89999999999999999999999999999999998               699999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      +|.++..+|+|++|+.+|++++.++|++..++..++.++..+++...        +...|++++. .|.+...+..++.+
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES--------AKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888        5559999999 78889999999999


Q ss_pred             hhHhcccchhhHHHHh
Q psy1039         166 LVVLAREMSGAEMLLK  181 (206)
Q Consensus       166 ~~~~~~~~~a~~~~~~  181 (206)
                      +...++++++...+++
T Consensus       395 ~~~~~~~~~a~~~~~~  410 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYA  410 (457)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999877766654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=3.7e-15  Score=101.29  Aligned_cols=108  Identities=29%  Similarity=0.474  Sum_probs=102.5

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|.+...++.+|..+...|++++|+.+|++++... |.   ....+..+|.++...|++++|+..+++++...|.+..
T Consensus        29 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  104 (136)
T 2fo7_A           29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE  104 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            4567888999999999999999999999999999999 88   7888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      +++.+|.++...|++++|...+++++..+|++
T Consensus       105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.63  E-value=3.7e-15  Score=120.23  Aligned_cols=169  Identities=14%  Similarity=0.092  Sum_probs=137.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----h
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----I   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l   76 (206)
                      .+..+..+..+|.++...|++++|+.+|.+++++. +   +....+.++.++|.+|..+|++++|+.+|++++.     .
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            45678899999999999999999999999999986 4   2334567899999999999999999999999999     4


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          77 V-PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-----NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        77 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      + |....+++.+|.++..+|++++|...+++++.+.+.     .......++.++...++..     ....+..++++..
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~al~~~~~~~  333 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE-----AIQGFFDFLESKM  333 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH-----HHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHCc
Confidence            6 778899999999999999999999999999998542     2223344555555444321     1223666777775


Q ss_pred             CCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         151 DTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..+........++.++...|++++|...+
T Consensus       334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~  362 (383)
T 3ulq_A          334 LYADLEDFAIDVAKYYHERKNFQKASAYF  362 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            55666777888999999999999999998

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=7.7e-15  Score=114.45  Aligned_cols=172  Identities=15%  Similarity=0.126  Sum_probs=136.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP   78 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p   78 (206)
                      +..+..++..|..++..|++++|+.+|+++++.. |+. .....++..+|.++...|++++|+..+++++.+      .|
T Consensus         2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (338)
T 3ro2_A            2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   80 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence            3467789999999999999999999999999998 862 223678999999999999999999999999887      45


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHH--------------------HH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTK--------------------RM  132 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~--------------------~~  132 (206)
                      ....++..+|.++...|++++|...+++++.+.|....      +...++.++...++                    ..
T Consensus        81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (338)
T 3ro2_A           81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ  160 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence            56788999999999999999999999999998775543      77888888888887                    55


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .+.... ..+...++...+.+.........+.++...|++++|...+
T Consensus       161 ~A~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  206 (338)
T 3ro2_A          161 AAVDLY-EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH  206 (338)
T ss_dssp             HHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            533311 1222223332223344567788899999999999998888

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=6.3e-15  Score=125.34  Aligned_cols=162  Identities=10%  Similarity=-0.010  Sum_probs=145.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc--CHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIE   68 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~--~~~~A~~   68 (206)
                      +|..+|++..+|+.+|.++...|+          +++++..++++++.+ |.   +..+|++++-++..++  +++++++
T Consensus        55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK---~y~aW~hR~w~l~~l~~~~~~~el~  130 (567)
T 1dce_A           55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELE  130 (567)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcccccHHHHHH
Confidence            356799999999999999999998          999999999999999 99   8999999999999999  7799999


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--------------HHHHH
Q psy1039          69 DCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV--------------TKRMQ  133 (206)
Q Consensus        69 ~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~  133 (206)
                      .++++++++|.+..+|..++.++..+| .++++++++.++++.+|.+..++...+.+...+              +...+
T Consensus       131 ~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~e  210 (567)
T 1dce_A          131 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK  210 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHH
Confidence            999999999999999999999999999 999999999999999999999999999998876              22222


Q ss_pred             HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccch
Q psy1039         134 ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS  174 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  174 (206)
                              ...++.+++. .|.+...|.-....+...+++.+
T Consensus       211 --------el~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          211 --------ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             --------HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             --------HHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                    4557777777 79999999888888888777543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=3.9e-15  Score=111.20  Aligned_cols=160  Identities=14%  Similarity=0.033  Sum_probs=137.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHhhhCCCC
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----QNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~l~p~~   80 (206)
                      +..++.+++.+|..+...+++++|+.+|+++++.+      ++.+++++|.+|.. +    ++++|+.+|+++.  ++.+
T Consensus        14 ~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~   84 (212)
T 3rjv_A           14 EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGS   84 (212)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTC
T ss_pred             HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCC
Confidence            34688999999999999999999999999999876      57899999999988 7    8999999999995  4679


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          81 PKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEP--TNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        81 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      +.+++.+|.+|..    .+++++|+..|+++....|  +++.+...++.++..    .++..+        +..+|+++.
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~--------A~~~~~~A~  156 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK--------ASEYFKGSS  156 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHHHH
Confidence            9999999999998    8999999999999999988  458999999999877    444555        566999998


Q ss_pred             CCCCChhhhHHHHhhhhHhc------ccchhhHHHHh
Q psy1039         151 DTSAPMDKRVTAVNNLVVLA------REMSGAEMLLK  181 (206)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~  181 (206)
                      ..+.+......++.+|....      ++++|..++-+
T Consensus       157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~  193 (212)
T 3rjv_A          157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV  193 (212)
T ss_dssp             HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence            86667778889999887653      56888888754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=5.8e-15  Score=118.70  Aligned_cols=172  Identities=15%  Similarity=0.120  Sum_probs=138.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------CC
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------VP   78 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p   78 (206)
                      +..+..++..|..++..|++++|+.+|++++... |+. .....++..+|.++...|++++|+..|++++.+      .|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            4567789999999999999999999999999998 862 223578999999999999999999999999887      44


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHH--------------------HH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTK--------------------RM  132 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~  132 (206)
                      ....+++.+|.++...|++++|...+++++.+.|..      ..+...++.++...++                    ..
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            557889999999999999999999999999987754      3478888888888888                    55


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         133 QENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .+.... ..+...+....+.+........++.++...|++++|...+
T Consensus       165 ~A~~~~-~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (406)
T 3sf4_A          165 AAVDFY-EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH  210 (406)
T ss_dssp             HHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            544311 1222333333223444567788999999999999999888

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=1.2e-14  Score=117.31  Aligned_cols=174  Identities=14%  Similarity=0.070  Sum_probs=135.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----hCC
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-----IVP   78 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p   78 (206)
                      +..+..+..+|.++...|++++|+.+|.+++++..  ++....+.++.++|.+|..+|++++|+.+|++++.     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            45678899999999999999999999999999751  13334677899999999999999999999999999     788


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1039          79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQ---PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTS  153 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ....+++.+|.++..+|++++|...+++++.+.+.  ++...   ..++.++...++.     .....+..++++....+
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~-----~~~~~al~~~~~~~~~~  333 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE-----RKIHDLLSYFEKKNLHA  333 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH-----HHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhCCChh
Confidence            88999999999999999999999999999998654  33222   2333333222221     11223555666654445


Q ss_pred             CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         154 APMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      ........++.++...|++++|...+-+.-.
T Consensus       334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          334 YIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5566778899999999999999998855444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=2.5e-14  Score=97.52  Aligned_cols=99  Identities=10%  Similarity=-0.016  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      ..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy1039         128 VTKRMQENEQLQNKVHNMFKYVFD-TSA  154 (206)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (206)
                      .++..+        +...|++++. .|.
T Consensus        98 ~g~~~~--------A~~~~~~al~~~P~  117 (121)
T 1hxi_A           98 EHNANA--------ALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHH--------HHHHHHHHHC----
T ss_pred             cCCHHH--------HHHHHHHHHHhCcC
Confidence            998888        4558888877 443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.60  E-value=4.1e-15  Score=117.16  Aligned_cols=167  Identities=10%  Similarity=-0.014  Sum_probs=147.7

Q ss_pred             cccchhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHH--HHHHHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSA----FKQ---GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND--KVIEDCSK   72 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~----~~~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~   72 (206)
                      |..+|++..+|+.++.++    ...   +++++++.++.++++.+ |.   +..+|..++-++...|.++  ++++.+.+
T Consensus        96 L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~  171 (306)
T 3dra_A           96 ALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PK---NHHVWSYRKWLVDTFDLHNDAKELSFVDK  171 (306)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            567999999999999999    776   89999999999999999 99   8999999999999999999  99999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          73 SLEIVPDDPKALFRRCQAYEAIGK------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        73 al~l~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                      +++.+|.|..+|..++.++..+|.      ++++++.+.+++..+|+|.+++..++.+....+....       .+..+.
T Consensus       172 ~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~-------~~~~~~  244 (306)
T 3dra_A          172 VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT-------QLEEFS  244 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG-------GGHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH-------HHHHHH
Confidence            999999999999999999999998      9999999999999999999999999999887764322       144566


Q ss_pred             HHhcC-C---CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         147 KYVFD-T---SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       147 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .++.. .   +.+.....-++.++.+.|+.++|.+.+
T Consensus       245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            66665 3   567778888999999989888888766

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.60  E-value=8e-16  Score=102.21  Aligned_cols=96  Identities=25%  Similarity=0.422  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------H
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------P   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~   81 (206)
                      ++..++.+|..++..|+|++|+..|+++++++ |+   ++.+++++|.++..+|++++|+..|+++++++|++      .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            57889999999999999999999999999999 98   78999999999999999999999999999999999      8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      .+++.+|.++..+|+++.|+..+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            99999999999999888887665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=1.8e-14  Score=102.89  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..++.+|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ..+++...        +..+|++++. .|.+...+
T Consensus        90 ~~~g~~~~--------A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           90 FDMADYKG--------AKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHHSSSCCHH
T ss_pred             HHccCHHH--------HHHHHHHHHHhCCCchHHH
Confidence            99998888        4558888887 56665533

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.59  E-value=6.3e-14  Score=99.20  Aligned_cols=128  Identities=17%  Similarity=0.089  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..+..+|.+++..|++++|+..|++++.++|.+..+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh--HHHHhhhhHhcccchhhHHHHh
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR--VTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      ...++...        +..+|++++. .|.+...+  ...+..+...|++++|++.+-+
T Consensus        92 ~~~~~~~~--------A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           92 MALGKFRA--------ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            99888887        4558888888 67777777  4455558888999999998843

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=5.9e-14  Score=95.01  Aligned_cols=120  Identities=14%  Similarity=0.213  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ....+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (206)
                      ...++...        +..+|++++. .|.+...+..++.++...|+++
T Consensus        91 ~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           91 SSLNKHVE--------AVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCHHH--------HHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99888877        4558888888 7888899999999999888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-14  Score=97.69  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|...+++++..+|++..++..++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcc
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAR  171 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  171 (206)
                      ...++..+        +..+|++++. .|.+...+..++.++..+|+
T Consensus        95 ~~~~~~~~--------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           95 EAMKDYTK--------AMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHH--------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99888877        4558888887 67788888888888877663

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=1.6e-14  Score=121.57  Aligned_cols=166  Identities=11%  Similarity=0.049  Sum_probs=129.6

Q ss_pred             cccchhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHccCHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFK-------QGDYE-------TALDFYTKALK-VTAEESHERATCLKNRAAVYLKQNQNDKV   66 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~~p~~~~~~~~~~~la~~~~~~~~~~~A   66 (206)
                      +..+|+++..|...|..+..       .|+++       +|+..|+++++ .. |+   +..+|..+|..+...|++++|
T Consensus       265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~-p~---~~~l~~~~~~~~~~~g~~~~A  340 (530)
T 2ooe_A          265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV  340 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC-SS---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHhcCCHHHH
Confidence            45578888999999998886       68876       88999999997 78 88   788899999999999999999


Q ss_pred             HHHHHHHhhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy1039          67 IEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA-IVTKRMQENEQLQNKVHN  144 (206)
Q Consensus        67 ~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  144 (206)
                      ...|+++++++|.++ .+|..+|..+...|++++|...|++++...|.+.......+.+.. ..++...        +..
T Consensus       341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~--------A~~  412 (530)
T 2ooe_A          341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV--------AFK  412 (530)
T ss_dssp             HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH--------HHH
T ss_pred             HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH--------HHH
Confidence            999999999998885 688888888888889999999999998888876555544333321 2233333        455


Q ss_pred             HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +|++++. .|.+...+...+..+...|+.+.|...+
T Consensus       413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            7777777 6777888888888888888877766665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.58  E-value=1.4e-13  Score=109.24  Aligned_cols=157  Identities=11%  Similarity=0.023  Sum_probs=133.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC--HHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGD----------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ--NDKVIE   68 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~--~~~A~~   68 (206)
                      +|..+|++..+|+.++.++...|.          +++++.++..++..+ |.   +..+|..++.++...++  +++++.
T Consensus        56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PK---ny~aW~hR~wlL~~l~~~~~~~EL~  131 (331)
T 3dss_A           56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK---SYGTWHHRCWLLSRLPEPNWARELE  131 (331)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHhccCcccHHHHHH
Confidence            367899999999999999998776          789999999999999 99   89999999999999994  999999


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH------HHHHHHHHH
Q psy1039          69 DCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM------QENEQLQNK  141 (206)
Q Consensus        69 ~~~~al~l~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~  141 (206)
                      .+.++++++|.|..+|..++.+....|. +++++.++.+++..+|.|.+++...+.+...+....      .........
T Consensus       132 ~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e  211 (331)
T 3dss_A          132 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK  211 (331)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence            9999999999999999999999999999 699999999999999999999999999988772100      000001112


Q ss_pred             HHHHHHHhcC-CCCChhhhHH
Q psy1039         142 VHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus       142 ~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      ...++..++. .|.+...+.=
T Consensus       212 Ele~~~~ai~~~P~d~SaW~Y  232 (331)
T 3dss_A          212 ELELVQNAFFTDPNDQSAWFY  232 (331)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            4557777777 7888887753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=1.9e-13  Score=106.53  Aligned_cols=165  Identities=13%  Similarity=0.015  Sum_probs=132.9

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-   80 (206)
                      +|.....+...+..++..|+|++|+..+.++++.. |..   ......++.+|.++...|++++|+..|++++.+.+.. 
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence            45667778899999999999999999999999987 642   1233456779999999999999999999999876543 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIH---RVEPTNK----AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY  148 (206)
Q Consensus        81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (206)
                           ..+++.+|.+|...|++++|..+|++++   ...|++.    .+..+++.++...++..++..        ++++
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~--------~~~k  221 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY--------QVNK  221 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH--------HHHH
Confidence                 5689999999999999999999999999   5566643    578889999998888888554        4444


Q ss_pred             hcC-------CCCChhhhHHHHhhhhHhcccchhhHH
Q psy1039         149 VFD-------TSAPMDKRVTAVNNLVVLAREMSGAEM  178 (206)
Q Consensus       149 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~  178 (206)
                      ++.       ..........+|.++..+|++++|+..
T Consensus       222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~  258 (293)
T 2qfc_A          222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            443       122366778899999999999999444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=6.3e-15  Score=118.51  Aligned_cols=166  Identities=13%  Similarity=0.154  Sum_probs=131.9

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccC-------------------
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQ-------------------   62 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~-------------------   62 (206)
                      .|..+..+..+|.++...|++++|+.+|.+++.+. |.   ......++..+|.++...|+                   
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence            56678889999999999999999999999999887 53   22346688899999999999                   


Q ss_pred             -HHHHHHHHHHHhhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHH
Q psy1039          63 -NDKVIEDCSKSLEI------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVT  129 (206)
Q Consensus        63 -~~~A~~~~~~al~l------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~  129 (206)
                       +++|+..|.+++.+      .|....++..+|.++...|++++|...+++++.+.|....      +...++.++...+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  241 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG  241 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence             99999999998877      3444668889999999999999999999999988776655      7778888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         130 KRMQENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +..++..        ++++++. .      +........++.++...|++++|...+
T Consensus       242 ~~~~A~~--------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  290 (406)
T 3sf4_A          242 EFETASE--------YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH  290 (406)
T ss_dssp             CHHHHHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHH--------HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            7777443        5544443 1      122566778899999999999888887

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.58  E-value=6.1e-14  Score=113.04  Aligned_cols=161  Identities=14%  Similarity=0.149  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------CH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DP   81 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~   81 (206)
                      .++..|..++..|++++|+.+|++++.+..  ++.+..+.+++++|.++..+|++++|+.++++++.+.+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            577899999999999999999999998751  233457889999999999999999999999999987543       24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----  151 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  151 (206)
                      .++..+|.++..+|++++|...|++++.+.+.      ...+...++.++...++..++..        +|++++.    
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~--------~~~~al~~~~~  254 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE--------HFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHh
Confidence            57889999999999999999999999997542      13567788888888888777544        4444443    


Q ss_pred             --CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 --TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                        .|........++.++...|++++|...+
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  284 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFI  284 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence              2444778889999999999999999888

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.58  E-value=1.8e-14  Score=110.00  Aligned_cols=107  Identities=23%  Similarity=0.216  Sum_probs=96.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+..+|.++...|++++|+.+|.+++.+..    |+.+....++.++|.++...|++++|+..|++++.+   
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3588899999999999999999999999999999820    222337889999999999999999999999999999   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        77 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                           .|....++..+|.++...|++++|...+++++.+
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 7777889999999999999999999999999986

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=6.4e-15  Score=119.27  Aligned_cols=166  Identities=14%  Similarity=0.166  Sum_probs=135.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---CcHHHHHHHHHHHHHHHHccC-----------------HH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE---ESHERATCLKNRAAVYLKQNQ-----------------ND   64 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~~~la~~~~~~~~-----------------~~   64 (206)
                      .|..+..+..+|.++...|++++|+.+|.+++.+. +   +.+....++.++|.++...|+                 ++
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~  200 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT  200 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence            57788999999999999999999999999999984 2   122377889999999999999                 99


Q ss_pred             HHHHHHHHHhhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHHHH
Q psy1039          65 KVIEDCSKSLEIV------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRM  132 (206)
Q Consensus        65 ~A~~~~~~al~l~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~  132 (206)
                      +|+.+|.+++.+.      |....++..+|.++...|++++|...+++++.+.|....      +...++.++...++..
T Consensus       201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  280 (411)
T 4a1s_A          201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE  280 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence            9999999998774      334568999999999999999999999999998876554      7788888888877777


Q ss_pred             HHHHHHHHHHHHHHHHhcC-C------CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         133 QENEQLQNKVHNMFKYVFD-T------SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++..        +|++++. .      .........++.++...|++++|...+
T Consensus       281 ~A~~--------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          281 DAAE--------HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7444        4444443 1      123567788999999999999998888

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=3.3e-14  Score=97.89  Aligned_cols=98  Identities=10%  Similarity=0.071  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ++..++.+|.+++..|+|++|+..|++++.++|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..++.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ...++...+        ...|++++.
T Consensus        88 ~~~~~~~~A--------~~~~~~a~~  105 (137)
T 3q49_B           88 LEMESYDEA--------IANLQRAYS  105 (137)
T ss_dssp             HHTTCHHHH--------HHHHHHHHH
T ss_pred             HHHhhHHHH--------HHHHHHHHH
Confidence            999988874        446666665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.56  E-value=1.2e-13  Score=92.70  Aligned_cols=100  Identities=10%  Similarity=0.046  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1039          27 TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH  106 (206)
Q Consensus        27 ~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  106 (206)
                      +|+..|+++++.+ |+   +..+++++|.++...|++++|+..|++++.++|++..+++.+|.++...|++++|...|++
T Consensus         3 ~a~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQG-TD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTT-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5889999999999 98   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCC--hhHHHHHHHHHHHHHH
Q psy1039         107 IHRVEPTN--KAIQPVLSRLFAIVTK  130 (206)
Q Consensus       107 al~~~p~~--~~~~~~l~~~~~~~~~  130 (206)
                      ++.++|.+  ......+......++.
T Consensus        79 al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           79 GLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccccHHHHHHHHHHHHHhcc
Confidence            99998854  4444455444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.56  E-value=1.7e-14  Score=102.84  Aligned_cols=119  Identities=14%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      .+..+..+|..++..|+|++|+..|++++.+                  +|.+..+++++|.++..+|+|++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            5778999999999999999999999999999                  7777899999999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh-hhhHHHHhhhhHhccc
Q psy1039         108 HRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM-DKRVTAVNNLVVLARE  172 (206)
Q Consensus       108 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~  172 (206)
                      +.++|+++.++..++.++..+++...        +...|++++. .|.+. .++..+..+.....+.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~--------A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDE--------AEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888        5558888888 67776 5566666665555444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.55  E-value=1.1e-13  Score=116.39  Aligned_cols=164  Identities=8%  Similarity=-0.062  Sum_probs=140.8

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..|++...|...|..+...|++++|...|+++++.. |.   ++ .+|..+|.++.+.|++++|...|+++++..|....
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-cc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            579999999999999999999999999999999998 87   43 58999999999999999999999999999999888


Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC----h
Q psy1039          83 ALFRRCQA-YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----M  156 (206)
Q Consensus        83 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~  156 (206)
                      .+...|.+ +...|++++|...|+++++.+|+++.++..++.+....++..+        +..+|++++. .|.+    .
T Consensus       392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~--------Ar~~~~~al~~~~~~~~~~~  463 (530)
T 2ooe_A          392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTSGSLPPEKSG  463 (530)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH--------HHHHHHHHHHSCCSCGGGCH
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh--------HHHHHHHHHhccCCCHHHHH
Confidence            88877765 4469999999999999999999999999999998887777666        5668888887 3433    3


Q ss_pred             hhhHHHHhhhhHhcccchhhHHH
Q psy1039         157 DKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..+..........|+.+.+....
T Consensus       464 ~lw~~~~~~e~~~G~~~~~~~~~  486 (530)
T 2ooe_A          464 EIWARFLAFESNIGDLASILKVE  486 (530)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Confidence            36777777777788877776655

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.54  E-value=1.5e-14  Score=102.71  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------DPK-----ALFRRCQAYEAIGKFEEAYTDAKHIHRV---  110 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---  110 (206)
                      .+..+.++|..++..|+|++|+..|+++++++|+       +..     +|+++|.++..+|+|++|+.+|++++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4677899999999999999999999999999999       544     9999999999999999999999999999   


Q ss_pred             ----CCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy1039         111 ----EPTNKAIQ----PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPM  156 (206)
Q Consensus       111 ----~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                          +|++..++    .+.+.++..+++..+        +...|++++. .|.+.
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE--------Al~~y~kAlel~p~d~  136 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAE--------AMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHHCC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHH--------HHHHHHHHHhcCCCcH
Confidence                99999999    999999999999999        4458888877 44443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.54  E-value=1.3e-13  Score=88.03  Aligned_cols=84  Identities=32%  Similarity=0.478  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      .++..++.+|..++..|++++|+.+|+++++.. |+   +..+++++|.++...|++++|+..|++++.++|.++.++..
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            445566666666666666666666666666666 65   55566666666666666666666666666666666666666


Q ss_pred             HHHHHHHc
Q psy1039          87 RCQAYEAI   94 (206)
Q Consensus        87 la~~~~~~   94 (206)
                      +|.++..+
T Consensus        83 l~~~~~~~   90 (91)
T 1na3_A           83 LGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66665544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=2.3e-14  Score=111.71  Aligned_cols=170  Identities=17%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------   80 (206)
                      +..+..+|.+++..|++++|+.++++++.+..  ++.+....++..+|.++...|++++|+..+++++.+.|..      
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            57888999999999999999999999888731  1223367788899999999999999999999998886643      


Q ss_pred             HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHHHHHHHH
Q psy1039          81 PKALFRRCQAYEAIGK--------------------FEEAYTDAKHIHRVE------PTNKAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~  134 (206)
                      ..++..+|.++...|+                    +++|...+++++.+.      |....+...++.++...++...+
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            3488889999999999                    999999998888762      22345677777777777776664


Q ss_pred             HHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ..... .+........+.+.........+.++...|++++|...+
T Consensus       203 ~~~~~-~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          203 VIAHE-QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            43111 112222222112223446777888888888888888777

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=4.5e-13  Score=89.04  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|...+++++..+|+++.+...++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      ...++...        +..+|++++. .|.+...+..++.+
T Consensus        83 ~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEE--------AKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHH--------HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHH--------HHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            98888777        5558888888 67777766665544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.53  E-value=5.3e-13  Score=105.94  Aligned_cols=150  Identities=9%  Similarity=0.062  Sum_probs=124.9

Q ss_pred             cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p   78 (206)
                      |..+|.+..+|+.++.++...|  .+++++.++.++++.+ |.   +..+|..++.+....|. ++++++++.+++..+|
T Consensus       101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-pr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            5679999999999999999999  4999999999999999 98   89999999999999999 6999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR---MQENEQLQNK  141 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~  141 (206)
                      .|..+|..++.++..+              +.++++++++.+++.++|+|.+++..+..+.......   ..........
T Consensus       177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~  256 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS  256 (331)
T ss_dssp             CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence            9999999999999988              5689999999999999999999998776665543100   0000012223


Q ss_pred             HHHHHHHhcC-CCCC
Q psy1039         142 VHNMFKYVFD-TSAP  155 (206)
Q Consensus       142 ~~~~~~~~~~-~~~~  155 (206)
                      ....++.+++ .|++
T Consensus       257 el~~~~elle~~pd~  271 (331)
T 3dss_A          257 ELESCKELQELEPEN  271 (331)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhhCccc
Confidence            5557777887 5554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.52  E-value=5.7e-13  Score=89.33  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ....++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhc
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLA  170 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (206)
                      ...++...        +..+|++++. .|.+...+..++.++...|
T Consensus        88 ~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDE--------AIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHH--------HHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            88887777        4558888877 7888888888887776553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.52  E-value=7.4e-14  Score=109.81  Aligned_cols=163  Identities=12%  Similarity=0.039  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-----
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----   80 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-----   80 (206)
                      ...+...|.++...|+|++|+.+|.+++++. +.   ......++.++|.+|..+|++++|+.+|++++.+.+..     
T Consensus        36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4455566788888999999999999998886 42   22346688889999999999999999999998885432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q psy1039          81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-T  152 (206)
Q Consensus        81 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (206)
                       ..++.++|.++.. |++++|+.+|++++.+.|..      ..++..++.++..+++..++..        +|++++. .
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~~  185 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA--------SLQKEKSMY  185 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHHH
Confidence             4578888999988 99999999999999887654      3566777888777777777443        5555554 1


Q ss_pred             CC------ChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         153 SA------PMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       153 ~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      +.      ........+.++...|++++|...+-+
T Consensus       186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            11      123556677778888888888777643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.50  E-value=1.9e-13  Score=109.12  Aligned_cols=167  Identities=10%  Similarity=-0.053  Sum_probs=141.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHhhhC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-N-QNDKVIEDCSKSLEIV   77 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~l~   77 (206)
                      +|..+|++..+|+.+|.++...| .+++++..+..++..+ |.   +..+|..++.++..+ + ++++++..+.++++++
T Consensus        80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PK---ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d  155 (349)
T 3q7a_A           80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LK---SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD  155 (349)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC
T ss_pred             HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Confidence            36789999999999999999999 5999999999999999 99   899999999999998 8 8999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1039          78 PDDPKALFRRCQAYEAIGKFE--------EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYV  149 (206)
Q Consensus        78 p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      |.|..+|..++.++..+|.++        ++++.+.++++.+|.|..++...+.+...++.... ..........+++++
T Consensus       156 pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~-~~~~~~eELe~~~~a  234 (349)
T 3q7a_A          156 PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET-SSRSLQDELIYILKS  234 (349)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC-CHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHH
Confidence            999999999999999999988        99999999999999999999999999877654100 001111244577777


Q ss_pred             cC-CCCChhhhHHHHhhhhHhccc
Q psy1039         150 FD-TSAPMDKRVTAVNNLVVLARE  172 (206)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~~~~~~  172 (206)
                      +. .|.+...+.-....+...|+.
T Consensus       235 I~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          235 IHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhcCCC
Confidence            77 788888887777666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.49  E-value=3.9e-13  Score=94.03  Aligned_cols=130  Identities=12%  Similarity=0.137  Sum_probs=107.2

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-   80 (206)
                      .+..+..+..+|..++..|++++|+.+|.+++.+. +.   ......++..+|.++...|++++|+..+++++.+.+.. 
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            35667899999999999999999999999999987 53   22344689999999999999999999999999886543 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHH
Q psy1039          81 -----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        81 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  135 (206)
                           ..+++.+|.++...|++++|...+++++.+.+..      ..+...++.++...++..++.
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence                 5689999999999999999999999999874432      345666777777777666633

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.49  E-value=4.1e-12  Score=98.96  Aligned_cols=172  Identities=13%  Similarity=0.006  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHH---HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER---ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---   80 (206)
                      .....+...+..++..|+|++|+..+++++... +..+..   ...+..+|.++...|++++|+..|++++.+.+..   
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence            345566677899999999999999999999976 642211   3345568999999999999999999999875443   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-------PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                         ..++..+|.+|..+|++++|..+|++++...       |....+..+++.++...++..++..        ++++++
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~--------~~~~al  223 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY--------QVNKAI  223 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHH
Confidence               3479999999999999999999999999532       2224577888999988888887544        444444


Q ss_pred             C-------CCCChhhhHHHHhhhhHhccc-chhhHHHHhcchHHHHHHHhc
Q psy1039         151 D-------TSAPMDKRVTAVNNLVVLARE-MSGAEMLLKSGVAKQINTLLK  193 (206)
Q Consensus       151 ~-------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~  193 (206)
                      .       ..........+|.++..+|+. ++|...+      .+...+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~------~~Al~i~~  268 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY------KKASFFFD  268 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH------HHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH------HHHHHHHH
Confidence            3       233367888999999999965 9999988      55555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.48  E-value=9.2e-14  Score=108.11  Aligned_cols=136  Identities=13%  Similarity=0.074  Sum_probs=111.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..++.+|.++...|++++|+..|+++++++ |+   +..+++++|.++..+|++++|+..|+++++++|++.
T Consensus        31 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           31 ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            45689999999999999999999999999999999999 98   899999999999999999999999999999998652


Q ss_pred             -----HH--------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          82 -----KA--------------------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        82 -----~~--------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                           ..                          ...++.  +..|++++|++.++++++++|++......+..+....++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  184 (281)
T 2c2l_A          107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK  184 (281)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHH
Confidence                 11                          111222  236899999999999999999988887777766655433


Q ss_pred             -HHHHHHHHHHHHHHHHHHhcC
Q psy1039         131 -RMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       131 -~~~~~~~~~~~~~~~~~~~~~  151 (206)
                       ..+        +..+|+++..
T Consensus       185 ~~~~--------a~~~f~~a~~  198 (281)
T 2c2l_A          185 YMAD--------MDELFSQVDE  198 (281)
T ss_dssp             HHHH--------HHHHHHHSSC
T ss_pred             HHHH--------HHHHHHhhhc
Confidence             233        5567777765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.48  E-value=9.4e-14  Score=90.60  Aligned_cols=93  Identities=16%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERAT-CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      .+..|..++..|++++|+..|+++++.+ |+   +.. +++++|.++..+|++++|+..|+++++++|++..++.+    
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTE-PV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHC-SS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----
Confidence            3678889999999999999999999999 88   778 89999999999999999999999999999999887754    


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          91 YEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        91 ~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                          +.+.++...|++++..+|+++.
T Consensus        75 ----~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 ----KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             ----HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             ----HHHHHHHHHHHHHhccCccccc
Confidence                6778888888888888887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=1e-13  Score=91.50  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSR  123 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~  123 (206)
                      +...+..+|.++...|++++|+..|+++++++|.+..+++.+|.++...|++++|...+++++..+|+  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         124 LFAIV-TKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       124 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ++... ++..+        +..+++++..
T Consensus        85 ~~~~~~~~~~~--------A~~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVE--------AEIAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHH--------HHHHHHHHGG
T ss_pred             HHHHHhCCHHH--------HHHHHHHHhh
Confidence            99988 88777        4458888877

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=3e-14  Score=118.88  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++..++.+|.++...|++++|+..|+++++++ |+   ++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus        33 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           33 IELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            56789999999999999999999999999999999999 98   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q psy1039          82 KALFRRCQA--YEAIGKFEEAYTDAK-----------HIHRVEPTN  114 (206)
Q Consensus        82 ~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  114 (206)
                      .++..++.+  +...|++++|+..++           +++.++|+.
T Consensus       109 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          109 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999988  899999999999999           888888865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.47  E-value=2.7e-13  Score=99.15  Aligned_cols=129  Identities=9%  Similarity=0.036  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---CCCC-
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---VPDD-   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---~p~~-   80 (206)
                      ..+..+..+|..+...|++++|+.+|++++.+..  +..+....++.++|.++...|++++|+..+++++.+   .|++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            6788999999999999999999999999999541  122337889999999999999999999999999988   4433 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHHHHHH
Q psy1039          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NK----AIQPVLSRLFAIVTKRMQEN  135 (206)
Q Consensus        81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~~~~~~~~  135 (206)
                         ..+++.+|.++...|++++|...+++++.+.+.  ++    .+...++.++...++..++.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  167 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ  167 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH
Confidence               567899999999999999999999999986432  22    23467777777777766643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8.2e-13  Score=91.61  Aligned_cols=113  Identities=9%  Similarity=-0.005  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  122 (206)
                      ....++.+|.+++..|++++|+..|++++.++|++   ..+++.+|.++...|++++|+..+++++..+|+++.++..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            68889999999999999999999999999999998   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039         123 RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      .++...++...        +..+|++++. .|.+...+..++.+.
T Consensus       107 ~~~~~~~~~~~--------A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          107 QALEKLGRLDQ--------AVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHTCHHH--------HHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHH--------HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999888887        4558888887 677777766655543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.47  E-value=9.5e-13  Score=83.98  Aligned_cols=83  Identities=25%  Similarity=0.345  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      ....++.+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|...+++++.++|+++.+...++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHH
Q psy1039         126 AIV  128 (206)
Q Consensus       126 ~~~  128 (206)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.4e-12  Score=86.25  Aligned_cols=84  Identities=15%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQP  119 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  119 (206)
                      ++..+..+|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..+++++.++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999998      55555


Q ss_pred             HHHHHHHHHH
Q psy1039         120 VLSRLFAIVT  129 (206)
Q Consensus       120 ~l~~~~~~~~  129 (206)
                      .++.++..++
T Consensus        83 ~~~~~~~~~~   92 (111)
T 2l6j_A           83 RLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=1.5e-12  Score=88.57  Aligned_cols=106  Identities=20%  Similarity=0.117  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHH
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLS  122 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~  122 (206)
                      .++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+...++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            478899999999999999999999999999998   899999999999999999999999999999999   78899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHH
Q psy1039         123 RLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA  162 (206)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (206)
                      .++...++...        +..+|++++. .|.+.......
T Consensus        84 ~~~~~~g~~~~--------A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           84 LSQYGEGKNTE--------AQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             HHHHHTTCHHH--------HHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHHcCCHHH--------HHHHHHHHHHHCCCChHHHHHH
Confidence            99998888877        4458888777 56655544433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.46  E-value=2.8e-13  Score=91.38  Aligned_cols=80  Identities=14%  Similarity=0.046  Sum_probs=75.2

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +|+++.+++.+|.+++..|++++|+.+|+++++++ |+   ++.+++++|.++..+|++++|+..|++++...|+++...
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PN---HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            69999999999999999999999999999999999 99   899999999999999999999999999999999998765


Q ss_pred             HHHH
Q psy1039          85 FRRC   88 (206)
Q Consensus        85 ~~la   88 (206)
                      ....
T Consensus        99 ~~~~  102 (117)
T 3k9i_A           99 SYKQ  102 (117)
T ss_dssp             HTHH
T ss_pred             HHHH
Confidence            4433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.46  E-value=3.6e-13  Score=105.87  Aligned_cols=135  Identities=9%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---   80 (206)
                      ..+..+.++|.++...|++++|+.+|++++++. +.   ....+.++.++|.+|.. |++++|+.+|++++.+.|..   
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            457789999999999999999999999999986 42   22346789999999998 99999999999999998754   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA------IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                         ..++.++|.++..+|+|++|+..|++++.+.|++..      +...++.++...++...        +..+|++++.
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------A~~~~~~al~  223 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA--------AQKCVRESYS  223 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH--------HHHHHHHHhC
Confidence               578999999999999999999999999998776542      44555556555566666        4457777763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=7e-13  Score=89.73  Aligned_cols=118  Identities=12%  Similarity=0.102  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hhHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-------KAIQ  118 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  118 (206)
                      .+..++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|...+++++...|++       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999877       7788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcc
Q psy1039         119 PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR  171 (206)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (206)
                      ..++.++...++...        +..+|++++..+.+......++.+....++
T Consensus        83 ~~la~~~~~~~~~~~--------A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           83 ARIGNSYFKEEKYKD--------AIHFYNKSLAEHRTPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHTTCHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            888888888887777        455888887732356666666666555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=6.3e-13  Score=113.08  Aligned_cols=124  Identities=9%  Similarity=0.071  Sum_probs=116.8

Q ss_pred             cccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p   78 (206)
                      +..+|++..+|+.+|.++...|  +|+++++++.++++.+ |.   +..+|..++.+....| .++++++++.++++.+|
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence            5678999999999999999999  7899999999999999 99   8999999999999999 99999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEAI--------------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .+..+|+.+|.++..+              +.++++++++.+++.++|++..++..++.+....+
T Consensus       176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            9999999999999986              66899999999999999999999999988876544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=9.9e-13  Score=98.05  Aligned_cols=131  Identities=11%  Similarity=-0.007  Sum_probs=113.7

Q ss_pred             chhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhh
Q psy1039           5 NMNDYNKLKESGNSAFKQG----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l   76 (206)
                      .+.++.+++.+|..|.. |    ++++|+.+|+++++..      ++.+++++|.+|..    .+++.+|+.+|+++++.
T Consensus        46 ~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  118 (212)
T 3rjv_A           46 AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD  118 (212)
T ss_dssp             HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred             HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence            34678899999999998 7    9999999999998765      68899999999988    88999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy1039          77 VP--DDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT------KRMQENEQLQNKVHN  144 (206)
Q Consensus        77 ~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~  144 (206)
                      .|  .++.+++.+|.+|..    .+++++|+..|+++.+. |.++.+...++.++..-.      +..+        +..
T Consensus       119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~--------A~~  189 (212)
T 3rjv_A          119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQK--------ALH  189 (212)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHH--------HHH
T ss_pred             CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHH--------HHH
Confidence            98  469999999999999    89999999999999998 788889999999886532      3344        555


Q ss_pred             HHHHhcC
Q psy1039         145 MFKYVFD  151 (206)
Q Consensus       145 ~~~~~~~  151 (206)
                      +|+++.+
T Consensus       190 ~~~~A~~  196 (212)
T 3rjv_A          190 WLNVSCL  196 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=1.8e-12  Score=94.67  Aligned_cols=148  Identities=11%  Similarity=-0.020  Sum_probs=113.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh------hCCCCHHHHHHHHHHH
Q psy1039          19 AFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE------IVPDDPKALFRRCQAY   91 (206)
Q Consensus        19 ~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------l~p~~~~~~~~la~~~   91 (206)
                      ++..|++++|...++.... + | .   ...++..+|.++...|++++|+..|++++.      ..|....++..+|.++
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-H-PAT---ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE   76 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-S-TTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC-C-hHH---HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            4678999999996655544 4 4 5   788999999999999999999999999998      4455678899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCChh
Q psy1039          92 EAIGKFEEAYTDAKHIHRV---EPTN----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-------TSAPMD  157 (206)
Q Consensus        92 ~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  157 (206)
                      ...|++++|...+++++.+   .|++    ..+...++.++...++..++..        ++++++.       ......
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~al~~~~~~~~~~~~~~  148 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ--------EYEKSLVYAQQADDQVAIAC  148 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHHHHhccchHHHHH
Confidence            9999999999999999998   4433    3557778888888887777544        4444432       112233


Q ss_pred             hhHHHHhhhhHhcccchhhHHH
Q psy1039         158 KRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       158 ~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ....++.++...|++++|...+
T Consensus       149 ~~~~la~~~~~~g~~~~A~~~~  170 (203)
T 3gw4_A          149 AFRGLGDLAQQEKNLLEAQQHW  170 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHH
Confidence            4578899999999999998887

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=5.1e-12  Score=98.44  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHh---hhCCCCH-
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL---EIVPDDP-   81 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~l~p~~~-   81 (206)
                      ...++.+|..+...|++++|+.+|++++... +.   ......++.++|.+|...|++++|+.+|++++   +..|++. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            4556789999999999999999999999875 43   11246789999999999999999999999999   5566643 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHH
Q psy1039          82 ---KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        82 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~  134 (206)
                         .+++++|.++..+|+|++|..++++++.+.++.      ..+...++.++..+++..++
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence               689999999999999999999999999876431      56677888888887776664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=5.8e-13  Score=107.69  Aligned_cols=126  Identities=10%  Similarity=0.081  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLE----------------IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      .+..+..+|..++..|+|++|+..|+++++                ++|.+..+++++|.++..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            466789999999999999999999999998                7888899999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++|++..++..++.++..+++..+        +...|++++. .|.+...+..++.++...++.+++....
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~e--------A~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQ--------ALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hCchhHHHHHHHHHHHHHccCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888        5558888888 7889999999999999888887665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.42  E-value=1.5e-11  Score=98.09  Aligned_cols=165  Identities=10%  Similarity=-0.050  Sum_probs=141.6

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhhCCCCH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~   81 (206)
                      .-.|+...++..........+..++|+.++.+++.++ |+   +..+|..++.++..+| .+++++..+++++..+|.+.
T Consensus        48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN-PA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred             eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence            3456677778888888788888889999999999999 99   8999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          82 KALFRRCQAYEAI-G-KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        82 ~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      .+|+.++.++..+ + ++++++..+.+++..+|.|..++...+.+...++.........-.....++.+++. .|.+...
T Consensus       124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999998 8 99999999999999999999999999999888876551101111124557788888 8999999


Q ss_pred             hHHHHhhhhHhcc
Q psy1039         159 RVTAVNNLVVLAR  171 (206)
Q Consensus       159 ~~~~~~~~~~~~~  171 (206)
                      +...+.++...++
T Consensus       204 W~~R~~lL~~l~~  216 (349)
T 3q7a_A          204 WGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHTTSTT
T ss_pred             HHHHHHHHHhccc
Confidence            9999999888876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.42  E-value=1.4e-13  Score=109.99  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ   89 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~   89 (206)
                      ..++++|.+++..|+|++|+.+|+++++++ |+   +..+++++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            489999999999999999999999999999 98   89999999999999999999999999999999999999999998


Q ss_pred             H-HHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          90 A-YEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        90 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      + ....+..+.+...|.+++...|+++..
T Consensus       307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          307 LAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            8 555677888999999999999987653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=2.5e-13  Score=96.29  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----------
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDY----------ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----------   61 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----------   61 (206)
                      +..+|++++.|+++|.++...|++          ++|+..|+++++++ |+   ...+|+++|.+|..+|          
T Consensus        29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~---~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PK---KDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHhcccCcchhhhh
Confidence            567999999999999999999876          59999999999999 99   8999999999999885          


Q ss_pred             -CHHHHHHHHHHHhhhCCCCHH
Q psy1039          62 -QNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus        62 -~~~~A~~~~~~al~l~p~~~~   82 (206)
                       ++++|+.+|++|++++|++..
T Consensus       105 g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHH
Confidence             899999999999999999853

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=4.9e-14  Score=109.25  Aligned_cols=181  Identities=9%  Similarity=0.005  Sum_probs=150.0

Q ss_pred             cccchhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhccccCc---HH---------------HHHHHHHHHHH
Q psy1039           2 IDNNMNDYNKLKES-------GNSAFKQGDYETALDFYTKALKVTAEES---HE---------------RATCLKNRAAV   56 (206)
Q Consensus         2 l~~~p~~~~~~~~~-------g~~~~~~g~~~~A~~~~~~al~~~~p~~---~~---------------~~~~~~~la~~   56 (206)
                      +..+|..+++|..+       +.++...+++.+++..+++++.+. |..   ..               ...++..++.+
T Consensus        33 ~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~  111 (282)
T 4f3v_A           33 TNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-MSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC  111 (282)
T ss_dssp             HHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred             HHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-hhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence            46789999999999       999999999999999999999988 751   00               13456668899


Q ss_pred             HHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C-hhHHHHHHHHHHHHHHHHHH
Q psy1039          57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-N-KAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        57 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-~~~~~~l~~~~~~~~~~~~~  134 (206)
                      +...|+|++|.+.|..++..+|.+. +.+.+|.++...++|++|+..|+.+....+. . ..+...++.++..+++..+ 
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e-  189 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE-  189 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH-
Confidence            9999999999999999999999988 9999999999999999999999988775322 1 3588999999999999888 


Q ss_pred             HHHHHHHHHHHHHHhcCC---CC-ChhhhHHHHhhhhHhcccchhhHHHH----hcchHHHHHHHhc
Q psy1039         135 NEQLQNKVHNMFKYVFDT---SA-PMDKRVTAVNNLVVLAREMSGAEMLL----KSGVAKQINTLLK  193 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~  193 (206)
                             +..+|+++...   |. ........+.++..+|+.++|...+-    .+|. ..+...+.
T Consensus       190 -------Al~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          190 -------AERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             -------HHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             -------HHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence                   55588888763   33 55688999999999999999988773    4566 66666665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.41  E-value=2.1e-12  Score=84.79  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                      ++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++.+.|.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            677888888888888888888888888888888888888888888888888888888888888876644

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.40  E-value=1.6e-11  Score=102.30  Aligned_cols=157  Identities=10%  Similarity=0.005  Sum_probs=119.4

Q ss_pred             chhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhh
Q psy1039           5 NMNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI   76 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l   76 (206)
                      .+.++.+++.+|..|+.    .+++++|+.+|+++++.+      ++.+++.+|.+|..    .+++++|+.+|+++...
T Consensus        35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  108 (490)
T 2xm6_A           35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK  108 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            45677888889988888    888999999999988765      46788888888888    88889999999888764


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy1039          77 VPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKY  148 (206)
Q Consensus        77 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~  148 (206)
                        .++.+++.+|.+|..    .+++++|+..|+++...  +++.+...++.++..    .++..+        +..+|++
T Consensus       109 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~--------A~~~~~~  176 (490)
T 2xm6_A          109 --GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM--------AREWYSK  176 (490)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHH
T ss_pred             --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH--------HHHHHHH
Confidence              478888888888888    78888888888888764  577888888887764    333333        4456766


Q ss_pred             hcCCCCChhhhHHHHhhhhH----hcccchhhHHHH
Q psy1039         149 VFDTSAPMDKRVTAVNNLVV----LAREMSGAEMLL  180 (206)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~  180 (206)
                      +.+. .+......++.++..    .+++++|...+.
T Consensus       177 a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  211 (490)
T 2xm6_A          177 AAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYR  211 (490)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            6662 456677777777776    566666666653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.39  E-value=1.9e-12  Score=100.86  Aligned_cols=123  Identities=13%  Similarity=0.027  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-------CCCC
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-------VPDD   80 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~p~~   80 (206)
                      .+..+|..+...|++++|+.+|++++.+. +.   ......++.++|.+|..+|++++|+.+|+++++.       .|..
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            44468999999999999999999999965 32   1223557999999999999999999999999953       2233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHH-HHHH
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTK-RMQE  134 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~~  134 (206)
                      ..+++++|.++..+|+|++|+..+++++.+.+..      ..+...++.++..+++ ..++
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A  256 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI  256 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            5689999999999999999999999999987544      5778888888888874 3553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.39  E-value=9.8e-12  Score=96.35  Aligned_cols=116  Identities=7%  Similarity=-0.053  Sum_probs=90.6

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CC-
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD-   79 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~-   79 (206)
                      ..+|.+. ..+.+|..++..|+|++|+.+|+.++..  |++.....+++++|.++..+|++++|+.+|++++...  |. 
T Consensus       130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~  206 (282)
T 4f3v_A          130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC  206 (282)
T ss_dssp             CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred             hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence            3567777 8888888888888888888888877664  3211124578888888888888888888888887554  55 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS  122 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  122 (206)
                      .+++++.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus       207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            6678888888888888888888888888888888 76665553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.38  E-value=1.8e-12  Score=85.08  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--CH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DP   81 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~   81 (206)
                      .+|+++..++.+|.+++..|++++|+.+|+++++++ |+   +..+|+.+|.++..+|++++|+..|++++++.|.  +.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            579999999999999999999999999999999999 98   8889999999999999999999999999998764  33


Q ss_pred             HHHHHHHHHHH
Q psy1039          82 KALFRRCQAYE   92 (206)
Q Consensus        82 ~~~~~la~~~~   92 (206)
                      .....+...+.
T Consensus        78 ~~~~~l~~~l~   88 (100)
T 3ma5_A           78 KDLSELQDAKL   88 (100)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            33333443333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.36  E-value=1.2e-11  Score=102.34  Aligned_cols=153  Identities=12%  Similarity=0.036  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHhhhCCCC
Q psy1039           8 DYNKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~   80 (206)
                      ++.+++.+|..+...|   ++++|+.+|+++.+.+ |.   .+..++++|.+|...    +++++|+.+|+++.   |.+
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~  247 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY  247 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC
Confidence            3448899999999999   9999999999999998 76   677778899998665    68999999999987   888


Q ss_pred             HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCC
Q psy1039          81 PKALFRRCQA-Y--EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-----KRMQENEQLQNKVHNMFKYVFDT  152 (206)
Q Consensus        81 ~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      +.+++++|.+ +  ...+++++|+..|+++..  ++++.+...++.++. .+     +..+        +..+|+++.  
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~--------A~~~~~~Aa--  314 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKA--------AEAHFEKAV--  314 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHH--------HHHHHHTTT--
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHH--------HHHHHHHHh--
Confidence            9999999988 4  578899999999998875  458888888888876 33     3344        555888887  


Q ss_pred             CCChhhhHHHHhhhhH----hcccchhhHHHH
Q psy1039         153 SAPMDKRVTAVNNLVV----LAREMSGAEMLL  180 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~----~~~~~~a~~~~~  180 (206)
                      +.+......++.+|..    ..++++|..++.
T Consensus       315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  346 (452)
T 3e4b_A          315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLL  346 (452)
T ss_dssp             TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            7777777888877765    124456666553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.35  E-value=4.9e-11  Score=99.29  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCC
Q psy1039           7 NDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p   78 (206)
                      .++.+++.+|..|..    .+++++|+.+|+++.+.+      ++.+++++|.+|..    .+++++|+.+|+++...  
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  144 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--  144 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            456677778888877    778888888888877754      45667777777777    67777777777777654  


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        79 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      .++.+++.+|.+|..    .+++++|+..|+++.+.  +++.+...++.++..
T Consensus       145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            467777777777776    67777777777777764  466777777776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.34  E-value=7.3e-11  Score=98.58  Aligned_cols=126  Identities=10%  Similarity=0.007  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC-
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD-   80 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~-   80 (206)
                      .....+..+...|+|++|+.+|++++.+..    |+++.....+.++|.+|..+|+|++|+..+++++.+     .|++ 
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            344556667889999999999999998642    556778999999999999999999999999999966     4555 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChhHHHH---HHHHHHHHHHHHHHHH
Q psy1039          81 --PKALFRRCQAYEAIGKFEEAYTDAKHIHR-----VEPTNKAIQPV---LSRLFAIVTKRMQENE  136 (206)
Q Consensus        81 --~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~---l~~~~~~~~~~~~~~~  136 (206)
                        ...+.++|.+|..+|++++|...|+++++     +.|+||.+...   +..++..++..+++..
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              45789999999999999999999999998     47888876654   4444445555555333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.34  E-value=4e-12  Score=85.16  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=78.1

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--   79 (206)
                      +..+|+++..++.+|.+++..|++++|+.+|++++.++ |+   ....++++|.++...|++++|+..|++++.++|.  
T Consensus        12 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           12 LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            56789999999999999999999999999999999999 98   7899999999999999999999999999999884  


Q ss_pred             CHHHHHHHHHHHHHcC
Q psy1039          80 DPKALFRRCQAYEAIG   95 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g   95 (206)
                      +..+...+...+..++
T Consensus        88 ~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           88 DQQVVKELQVFLRRLA  103 (115)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhc
Confidence            4444444544444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=2.6e-11  Score=97.01  Aligned_cols=163  Identities=9%  Similarity=0.040  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH----
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP----   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----   81 (206)
                      .+......|..++..|++++|+..+++++... |..  .....++..+|.++...|++++|...+++++.+.|...    
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            46778889999999999999999999999988 642  12344788899999999999999999999998866432    


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          82 --KALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        82 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                        .++..+|.++...|++++|...+++++.+.+        ....+...++.++...++...+.        .++++++.
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--------~~~~~al~  163 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE--------ASARSGIE  163 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH--------HHHHHHHH
Confidence              3478899999999999999999999998753        23345666788887777777744        46666554


Q ss_pred             -CCC-----ChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         152 -TSA-----PMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 -~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                       .+.     .......++.++...|++++|...+
T Consensus       164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  197 (373)
T 1hz4_A          164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL  197 (373)
T ss_dssp             HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             221     2345667889999999999998877

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.29  E-value=5.1e-11  Score=77.34  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP  119 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  119 (206)
                      .+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|++++.++|+++.++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            357899999999999999999999999999999 9999999999999999999999999999999998873

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.26  E-value=3e-10  Score=90.81  Aligned_cols=162  Identities=13%  Similarity=0.066  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--------   77 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------   77 (206)
                      ...+..+|..+...|++++|+..+.+++.+. |.   ......++.++|.++...|++++|+..|++++.+.        
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            3478899999999999999999999999986 53   12235567899999999999999999999999875        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy1039          78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-----KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-  151 (206)
Q Consensus        78 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (206)
                      |....++..+|.++...|++++|...+++++.+.|..     ..+...++.++...++..++..        +++++.. 
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~l~~a~~~  203 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS--------QLNRLENL  203 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHH
Confidence            3345678889999999999999999999999988763     2356667777777777766443        5555443 


Q ss_pred             --CCCC-hhhhH----HHHhhhhHhcccchhhHHH
Q psy1039         152 --TSAP-MDKRV----TAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       152 --~~~~-~~~~~----~~~~~~~~~~~~~~a~~~~  179 (206)
                        .+.. .....    ..+..+...|++++|...+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence              1111 11111    2334466788887776665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.26  E-value=5.6e-10  Score=87.56  Aligned_cols=153  Identities=12%  Similarity=0.054  Sum_probs=118.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----   79 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----   79 (206)
                      +.....+..+|.++...|++++|++++.+++..+ |  +   +..++..++.++.++|+.+.|...++++.+.+|+    
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~~~---~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~  172 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EAEG---TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG  172 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence            3445667899999999999999999999999988 7  6   8999999999999999999999999999999993    


Q ss_pred             CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Q psy1039          80 DPKALFRR--CQAYEAIG--KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD----  151 (206)
Q Consensus        80 ~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  151 (206)
                      +-.....+  |.+....|  ++.+|...|+.+....|+.......+. ++..+++..++..        .++.+..    
T Consensus       173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~--------~L~~l~~~~p~  243 (310)
T 3mv2_B          173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG--------IVELLLSDYYS  243 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH--------HHHHHHSHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH--------HHHHHHHhccc
Confidence            23344444  55577667  999999999999888886223223333 6777787777554        4444333    


Q ss_pred             -------CCCChhhhHHHHhhhhHhcc
Q psy1039         152 -------TSAPMDKRVTAVNNLVVLAR  171 (206)
Q Consensus       152 -------~~~~~~~~~~~~~~~~~~~~  171 (206)
                             .|.+.......+.+...+|+
T Consensus       244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          244 VEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCh
Confidence                   26777887777777777786

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.25  E-value=6e-11  Score=82.68  Aligned_cols=104  Identities=22%  Similarity=0.310  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------   79 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------   79 (206)
                      +..+..+|.++...|++++|+.+|++++.+. +.   ......++.++|.++...|++++|+..+++++.+.+.      
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            4689999999999999999999999999986 42   2334778999999999999999999999999977432      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT  113 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  113 (206)
                      ...++..+|.++...|++++|...+++++.+...
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            2567899999999999999999999999987543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.18  E-value=1.2e-09  Score=99.51  Aligned_cols=132  Identities=11%  Similarity=0.073  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-------------------------DDPKALFRRCQAYEAIGKFEEAY  101 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~~~~~la~~~~~~g~~~~A~  101 (206)
                      +..|..+|.++.++|++++|++.++++....+                         .+++.+..++..|...|.|++|+
T Consensus      1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence            34577888888888888888888888854443                         13444556777889999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----CChhhhHHHHhhhhHhcccchh
Q psy1039         102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS-----APMDKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       102 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~a  175 (206)
                      ..+++++.++|.|..+...++.++...+-..-.+     .++ +|..... ++     .+...|..+...|.+.|.++.|
T Consensus      1301 ~LlE~aL~LeraH~gmftELaiLyaKy~peklmE-----hlk-~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A         1301 TMLEAALGLERAHMGMFTELAILYSKFKPQKMRE-----HLE-LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred             HHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH-----HHH-HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999999999999988887654332222     233 4444444 44     6788899999999999999999


Q ss_pred             hHHHHhcch
Q psy1039         176 AEMLLKSGV  184 (206)
Q Consensus       176 ~~~~~~~~~  184 (206)
                      +.-++.-+.
T Consensus      1375 ~~tm~~h~~ 1383 (1630)
T 1xi4_A         1375 IITMMNHPT 1383 (1630)
T ss_pred             HHHHHhccH
Confidence            976666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.18  E-value=4.8e-10  Score=92.29  Aligned_cols=108  Identities=7%  Similarity=-0.011  Sum_probs=90.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC---HHH
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD---PKA   83 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~---~~~   83 (206)
                      +......|+|++|+.+|++++.+..    |+++.....+.++|.+|..+|+|++|+..+++++.+     .|++   ...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            4444467899999999999998532    666778899999999999999999999999999966     3444   457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLSR  123 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  123 (206)
                      ++++|.+|..+|++++|...|++++++     .|+||.+......
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            999999999999999999999999984     7888877665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.17  E-value=1.4e-09  Score=89.46  Aligned_cols=117  Identities=8%  Similarity=0.054  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh-----CCCC
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----VPDD   80 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~~   80 (206)
                      .........+...|+|++|+..|++++....    |+++.....+.++|.+|..+|+|++|+.++++++.+     .|++
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            3444555667789999999999999998542    566778899999999999999999999999999966     3455


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHH
Q psy1039          81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRV-----EPTNKAIQPVLSRLFA  126 (206)
Q Consensus        81 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~  126 (206)
                         ...++++|.+|..+|++++|...+++++++     .|+||.+...+..+..
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence               456999999999999999999999999984     7899888766554443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=6.8e-10  Score=71.93  Aligned_cols=72  Identities=19%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      ++..+..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            78899999999987766   7999999999999999999999999999999999999999999999999995544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.17  E-value=4.3e-10  Score=78.86  Aligned_cols=100  Identities=10%  Similarity=0.027  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhC-C-CCHHHHHHHHHHHHHcCCHHH
Q psy1039          25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFEE   99 (206)
Q Consensus        25 ~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~~~   99 (206)
                      ...+.+.|...+..+ |.   +..+.+++|.|+.+.+   ++.+++..++.+++.+ | ++.+++|.+|..++++|+|++
T Consensus        14 l~~~~~~y~~e~~~~-~~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CC---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            455677788888877 76   7899999999999988   6779999999999998 7 679999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039         100 AYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus       100 A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      |.++++++++++|+|..+......+...+
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988776665544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.16  E-value=4.2e-10  Score=93.08  Aligned_cols=156  Identities=13%  Similarity=0.055  Sum_probs=124.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhccccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCC
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETAL----DFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~----~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p   78 (206)
                      +.++.+++.+|..+...+.+++++    .++..+...+ |      .+++++|.+|...|   ++.+|+.+|+++....|
T Consensus       138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-~------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~  210 (452)
T 3e4b_A          138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-D------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT  210 (452)
T ss_dssp             HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC-T------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC-H------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence            345678889999999988554444    4455554444 4      37899999999999   99999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          79 DDPKALFRRCQAYEAI----GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA---IVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      .....++++|.+|...    +++++|+..|+++.   |+++.+...++.++.   ..++..+        +..+|+++.+
T Consensus       211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~--------A~~~~~~Aa~  279 (452)
T 3e4b_A          211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ--------MMKYLDNGRA  279 (452)
T ss_dssp             SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHH
Confidence            9999999999999776    79999999999998   999999999999843   2333333        6668888886


Q ss_pred             CCCChhhhHHHHhhhhHhc-----ccchhhHHHHh
Q psy1039         152 TSAPMDKRVTAVNNLVVLA-----REMSGAEMLLK  181 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~  181 (206)
                       ..+......++.+|. .|     ++++|..++.+
T Consensus       280 -~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          280 -ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             -TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence             557888888998887 55     66777776643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.14  E-value=9.5e-10  Score=72.63  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      +...+.+|..++..|+|..|+.+|+.|++.. +.    ......++..+|.|++++|+++.|+..++++++++|++..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~-~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhh-hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4455677777777777777777777777653 11    011455666666666666666666666666666666666665


Q ss_pred             HHHH
Q psy1039          85 FRRC   88 (206)
Q Consensus        85 ~~la   88 (206)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.11  E-value=1.3e-09  Score=71.89  Aligned_cols=81  Identities=14%  Similarity=0.019  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  118 (206)
                      ++.-++.+|..++..|+|..|+.+|++|++..       +....++..+|.++..+|+++.|...+++++.++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45668899999999999999999999999863       34578899999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q psy1039         119 PVLSRLFA  126 (206)
Q Consensus       119 ~~l~~~~~  126 (206)
                      .++..+..
T Consensus        84 ~n~~~~~~   91 (104)
T 2v5f_A           84 GNLKYFEY   91 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            88764443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.9e-09  Score=87.63  Aligned_cols=169  Identities=13%  Similarity=0.087  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--------------HERATCLKNRAAVYLKQNQNDKVIEDCSKSL   74 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al   74 (206)
                      |.+....|..+...|+|++|++.|.++++.. |..              .....++.++|.+|...|++++|++.+.+++
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3456778999999999999999999999988 641              2244578899999999999999999999999


Q ss_pred             hhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          75 EIVPDDPK------ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKV  142 (206)
Q Consensus        75 ~l~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  142 (206)
                      .+.+...+      +...+|.++...|+++.|+..+++++...+.      ...+...++.++...++..++...+.. +
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~-~  161 (434)
T 4b4t_Q           83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND-L  161 (434)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH-H
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH-H
Confidence            88766543      3455788888899999999999999886432      245777888888888888776552222 2


Q ss_pred             HHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         143 HNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ........+.+.........+.++...|+++.|...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  198 (434)
T 4b4t_Q          162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL  198 (434)
T ss_dssp             HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            2222222223455677888999999999999998887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.09  E-value=1.4e-09  Score=75.52  Aligned_cols=97  Identities=12%  Similarity=0.087  Sum_probs=79.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      +|..|...+.+++|+.+|+++.+..      ++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++++|.+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            8888888888888999999988876      57788889988888    78899999999888876  578888899988


Q ss_pred             HHH----cCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          91 YEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        91 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      |..    .+++++|...|+++.+.  .++.+...+
T Consensus       103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A          103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            888    88899999999888876  444444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.08  E-value=8.3e-10  Score=90.37  Aligned_cols=155  Identities=12%  Similarity=0.139  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC----------
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----------   79 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----------   79 (206)
                      ..|..+|..++..|+|++|..+|.++     ++       |..+|.|+.++|+|++|++.|+++.  +|.          
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n-------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SN-------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT-----TC-------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-----hh-------HHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHH
Confidence            48888888888888888888888864     22       6678888888888888888888872  221          


Q ss_pred             -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          80 -----------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKV  142 (206)
Q Consensus        80 -----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  142 (206)
                                       +++-...+..+|...|++++|+..+++++.+++.+..+...++.++.+.+-..-.+      .
T Consensus       189 ~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~e------h  262 (449)
T 1b89_A          189 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE------H  262 (449)
T ss_dssp             HTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHH------H
T ss_pred             HcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHH------H
Confidence                             11112234478999999999999999999999999999999988887654322211      2


Q ss_pred             HHHHHHhcC-CC-----CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         143 HNMFKYVFD-TS-----APMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       143 ~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      ...|...+. ++     .+...|..+.-.|.+.++++.|+.-++.-|.
T Consensus       263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~  310 (449)
T 1b89_A          263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  310 (449)
T ss_dssp             HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence            335555555 66     7889999999999999999999999997763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=7.8e-10  Score=92.36  Aligned_cols=108  Identities=11%  Similarity=0.053  Sum_probs=95.0

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+.++|.+|...|+|++|+.++++++.+..    |+++..+..+.++|.+|..+|++++|+..|++|+.+   
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~  425 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV  425 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999999999999999998542    667779999999999999999999999999999966   


Q ss_pred             --CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1039          77 --VPDDP---KALFRRCQAYEAIGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        77 --~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~  111 (206)
                        .|+++   +....++.++..++.|++|...|.++.+..
T Consensus       426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              56665   456788999999999999999999886543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=6.4e-09  Score=84.47  Aligned_cols=174  Identities=9%  Similarity=0.038  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC-----
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-----   78 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-----   78 (206)
                      ....++..+|..|...|+|++|+++|.+++... +.   ......+...+|.++...|++++|+..+++++...+     
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            345678999999999999999999999999876 53   112345667788898899999999999999987633     


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          79 -DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP------TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        79 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                       ....++..+|.++...|+|++|...+++++....      ....+...++.++...++..++...+. ++........+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~  210 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT-AARTAANSIYC  210 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHhhcCCC
Confidence             2367889999999999999999999999887522      224577778888888887777444111 12222222211


Q ss_pred             C-CCChhhhHHHHhhhhHhcccchhhHHHHhc
Q psy1039         152 T-SAPMDKRVTAVNNLVVLAREMSGAEMLLKS  182 (206)
Q Consensus       152 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  182 (206)
                      + .....+....+..+...+++++|.+.+...
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            1 112455666778888888888888777433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.95  E-value=1.9e-08  Score=91.92  Aligned_cols=142  Identities=16%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A  100 (206)
                      ..|+|++|+++++++   +      .+.+|+.+|.++...|++++|+..|.++     +++..|..+|.++.+.|+|++|
T Consensus      1088 ~i~nldrAiE~Aerv---n------~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC---N------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred             HHhhHHHHHHHHHhc---C------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHH
Confidence            445555555555432   1      3445555555555555555555555443     5555555555555555555555


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhcCCCCChhhhH
Q psy1039         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQ--------------------LQNKVHNMFKYVFDTSAPMDKRV  160 (206)
Q Consensus       101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  160 (206)
                      ++.|..+....++ +.+...++.++.++++......-                    ....+..+|+++       ..+.
T Consensus      1154 IeyL~mArk~~~e-~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~ 1225 (1630)
T 1xi4_A         1154 VKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFG 1225 (1630)
T ss_pred             HHHHHHHHhhccc-ccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHH
Confidence            5555555555422 11122233333222211110000                    000133344443       3567


Q ss_pred             HHHhhhhHhcccchhhHHHHhcch
Q psy1039         161 TAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      .++.++..+|++++|.+.+-+...
T Consensus      1226 rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1226 RLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHhCC
Confidence            777777777777777777755443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.95  E-value=7e-09  Score=81.36  Aligned_cols=140  Identities=10%  Similarity=0.041  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1039          28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAK  105 (206)
Q Consensus        28 A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~la~~~~~~g~~~~A~~~~~  105 (206)
                      |+..+++.+... +.   ....+..+|.++...|++++|+.++.+++..+|  .+.+++...+.++..+|+.+.|.+.++
T Consensus        85 a~~~l~~l~~~~-~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           85 NIEELENLLKDK-QN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             CCHHHHHTTTTS-CC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777888887765 44   345567899999999999999999999999997  889999999999999999999999999


Q ss_pred             HHHhcCCC----ChhHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhH
Q psy1039         106 HIHRVEPT----NKAIQPVLSRLFA--IVT--KRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAE  177 (206)
Q Consensus       106 ~al~~~p~----~~~~~~~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  177 (206)
                      +..+.+|+    +..+...+.....  ..+  +...        +..+|+.+.+..++......+.++++.+|++++|-.
T Consensus       161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~--------A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~  232 (310)
T 3mv2_B          161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATS--------NFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH--------HHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHH--------HHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence            99999984    3455555554433  323  2222        566888888844432222222228999999999888


Q ss_pred             HH
Q psy1039         178 ML  179 (206)
Q Consensus       178 ~~  179 (206)
                      .+
T Consensus       233 ~L  234 (310)
T 3mv2_B          233 IV  234 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.94  E-value=3.9e-09  Score=68.29  Aligned_cols=73  Identities=11%  Similarity=0.035  Sum_probs=68.3

Q ss_pred             chhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           5 NMNDYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +|++++.+..+|.+++..++   .++|...+++++.++ |+   +..+++.+|..++..|+|.+|+..++++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68899999999999987666   799999999999999 99   899999999999999999999999999999999843

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.94  E-value=8.3e-09  Score=71.54  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH----cCCHH
Q psy1039          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----IGKFE   98 (206)
Q Consensus        23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~   98 (206)
                      +++++|+.+|+++.+.. +.     .+.  +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~-----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EM-----FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CT-----THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHcCC-CH-----hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH
Confidence            47899999999999987 43     223  999999999999999999999987  689999999999999    89999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAI----VTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +|+..|+++.+.  .++.+...++.++..    .++..+        +..+|+++.+
T Consensus        79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~--------A~~~~~~Aa~  125 (138)
T 1klx_A           79 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ--------AVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH--------HHHHHHHHHH
Confidence            999999999886  789999999999876    555555        5558888776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.88  E-value=6e-08  Score=74.86  Aligned_cols=110  Identities=9%  Similarity=0.034  Sum_probs=94.4

Q ss_pred             ccchhhHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc-----cCHHHH
Q psy1039           3 DNNMNDYNKLKESGNSAFK-----QGD------YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----NQNDKV   66 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~-----~g~------~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~-----~~~~~A   66 (206)
                      ..+|++++.++..|.....     .|.      ...|...++++++++ |+ .....+|..+|..|...     |+.++|
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD-P~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA  223 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW-PS-YQEGAVWNVLTKFYAAAPESFGGGMEKA  223 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence            3578888888888877643     233      568889999999999 97 22466899999999996     999999


Q ss_pred             HHHHHHHhhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q psy1039          67 IEDCSKSLEIVPDD-PKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        67 ~~~~~~al~l~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~  114 (206)
                      ...|+++++++|+. ..+++..|..+.. .|++++|...+++++..+|..
T Consensus       224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999975 9999999999988 499999999999999998875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.80  E-value=9.9e-08  Score=76.32  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCH-------HHHH-HHHH--HHh
Q psy1039           8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN-------DKVI-EDCS--KSL   74 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al   74 (206)
                      .+-.++..|..++..++   +.+|+.+|++|++++ |+   .+.++..++.||.....+       ..++ ..+.  .++
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            45677888998888765   478999999999999 99   888898888888632211       1111 1222  234


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Q psy1039          75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS  153 (206)
Q Consensus        75 ~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
                      ..+|.++.++..+|..+...|++++|...+++++.++|+ ...+..++.++...|+..+        +...|.+++. .|
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~e--------A~e~~~~AlrL~P  341 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNRE--------AADAYLTAFNLRP  341 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHSC
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHH--------HHHHHHHHHhcCC
Confidence            678999999999999999999999999999999999975 5666788888888888888        4458888888 55


Q ss_pred             CCh
Q psy1039         154 APM  156 (206)
Q Consensus       154 ~~~  156 (206)
                      ...
T Consensus       342 ~~~  344 (372)
T 3ly7_A          342 GAN  344 (372)
T ss_dssp             SHH
T ss_pred             CcC
Confidence            443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=3.3e-08  Score=69.27  Aligned_cols=83  Identities=11%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             cchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039           4 NNMNDYNKLKESGNSAFKQG---DYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      .+|.+.++.++.|+.+.+.+   +.++++.+++..++.+.| +   ..++++++|..++++|+|++|..+++++++++|+
T Consensus        27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  103 (152)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            35678899999999999988   666999999999997623 3   6889999999999999999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy1039          80 DPKALFRRCQ   89 (206)
Q Consensus        80 ~~~~~~~la~   89 (206)
                      |..+...+-.
T Consensus       104 n~QA~~Lk~~  113 (152)
T 1pc2_A          104 NNQAKELERL  113 (152)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9887665443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.79  E-value=2.8e-08  Score=86.02  Aligned_cols=105  Identities=7%  Similarity=-0.034  Sum_probs=72.6

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh----
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETAL-DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----   76 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----   76 (206)
                      |...|..+..|+..+......|+.++|. ..|.+|+..+ |.   +..+|...+......|+++.|...|++++..    
T Consensus       336 L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~---s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~  411 (679)
T 4e6h_A          336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PN---SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD  411 (679)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777777776 7778887777 76   5666777777777777777777777777754    


Q ss_pred             -------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          77 -------VPD-----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        77 -------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                             .|.           ...+|...+......|..+.|...|.+|+..
T Consensus       412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   142           2345666666666666677777777777665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.75  E-value=3.2e-08  Score=79.09  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=87.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHcCC-------HHHHHH-HHHH--HHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQGD-------YETALD-FYTK--ALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC   70 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g~-------~~~A~~-~~~~--al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~   70 (206)
                      |+..+|+++.++..++.++.....       ...++. .+..  ++..+ |.   .+.++..+|..+...|++++|+..+
T Consensus       225 Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~-~~---~a~~~~alal~~l~~gd~d~A~~~l  300 (372)
T 3ly7_A          225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL-NN---LSIIYQIKAVSALVKGKTDESYQAI  300 (372)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-TT---CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccC-Cc---CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            467899999999998888863211       112221 1222  23455 66   7888989999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q psy1039          71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK  115 (206)
Q Consensus        71 ~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  115 (206)
                      ++++.++| ++.+|..+|.++...|++++|.+.|++|+.++|..+
T Consensus       301 ~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          301 NTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            99999997 477889999999999999999999999999999875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.73  E-value=3.8e-07  Score=79.00  Aligned_cols=170  Identities=8%  Similarity=-0.118  Sum_probs=131.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----------ccC--------cHHHHHHHHHHHHHHHHccCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT----------AEE--------SHERATCLKNRAAVYLKQNQN   63 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------~p~--------~~~~~~~~~~la~~~~~~~~~   63 (206)
                      +...|.+...|...+......|+++.|...|++++...          .|.        +.....+|...+....+.|..
T Consensus       371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l  450 (679)
T 4e6h_A          371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL  450 (679)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence            34568888889999999999999999999999999852          021        001345788888888889999


Q ss_pred             HHHHHHHHHHhhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          64 DKVIEDCSKSLEI-VPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNK  141 (206)
Q Consensus        64 ~~A~~~~~~al~l-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  141 (206)
                      +.|...|.+|++. .+.....|...|.+-...++ ++.|.+.|+++++..|+++..+..........++...        
T Consensus       451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~--------  522 (679)
T 4e6h_A          451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ--------  522 (679)
T ss_dssp             HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH--------
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH--------
Confidence            9999999999988 55567888888887777654 8999999999999999999998777776666555444        


Q ss_pred             HHHHHHHhcC-CC---CChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         142 VHNMFKYVFD-TS---APMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       142 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +..+|++++. .+   .....+......-...|..+.+.+..
T Consensus       523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7779999998 34   23456666666666777776655555

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.73  E-value=2.2e-07  Score=62.85  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHH---HHHHHHHHhhhC-C-CCHHHHHHHHHHHHHcCCHH
Q psy1039          24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK---VIEDCSKSLEIV-P-DDPKALFRRCQAYEAIGKFE   98 (206)
Q Consensus        24 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~~~~~la~~~~~~g~~~   98 (206)
                      ....+...|...+..+ +.   +....|++|-++.+......   ++..++..+.-+ | ...+++|.+|..++++|+|+
T Consensus        16 ~l~~~~~~y~~e~~~~-~~---s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhccC-CC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            3455666788887766 55   68899999999999887776   999999999887 5 57889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .|..+++.+++.+|+|..+......+...+.
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999877766655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.72  E-value=1.2e-07  Score=77.66  Aligned_cols=103  Identities=8%  Similarity=-0.025  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ++.....++..|.+.|++.++.+++.     . |+    ...|.++|.+++..|+|++|..+|.++        ..|..+
T Consensus        93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~-pn----~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~L  154 (449)
T 1b89_A           93 ESYVETELIFALAKTNRLAELEEFIN-----G-PN----NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL  154 (449)
T ss_dssp             ----------------CHHHHTTTTT-----C-C--------------------CTTTHHHHHHHT--------TCHHHH
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHHc-----C-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHH
Confidence            35667788999999999999887774     3 65    458999999999999999999999987        478899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                      |.++.++|+|++|++.++++     +++..+..........++...
T Consensus       155 A~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~l  195 (449)
T 1b89_A          155 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL  195 (449)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHH
Confidence            99999999999999999999     467777776666666665444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.61  E-value=3e-07  Score=75.62  Aligned_cols=80  Identities=18%  Similarity=0.168  Sum_probs=71.0

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+.++|.+|...|+|++|+.+|++++.+..    |+++..+..+.++|.+|..+|++++|+..|++|+++   
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999999999999999998543    667778999999999999999999999999999876   


Q ss_pred             --CCCCHHH
Q psy1039          77 --VPDDPKA   83 (206)
Q Consensus        77 --~p~~~~~   83 (206)
                        .|+++.+
T Consensus       415 ~lG~~Hp~~  423 (433)
T 3qww_A          415 AHGKDHPYI  423 (433)
T ss_dssp             HTCTTCHHH
T ss_pred             HcCCCChHH
Confidence              5777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.57  E-value=2.6e-07  Score=75.91  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=74.9

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhh---
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---   76 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---   76 (206)
                      .+|..+..+.++|.+|...|+|++|+.++++++.+..    |+++..+..+.++|.+|..+|++++|+..|++|+++   
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999998542    567778999999999999999999999999999866   


Q ss_pred             --CCCCHHH---HHHHHHHHH
Q psy1039          77 --VPDDPKA---LFRRCQAYE   92 (206)
Q Consensus        77 --~p~~~~~---~~~la~~~~   92 (206)
                        .|+++.+   +.+++.+..
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHH
Confidence              5666543   444555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.31  E-value=1.3e-05  Score=54.36  Aligned_cols=86  Identities=13%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +....++.|-++.+...   ..+++..++..++.+|. ..+++|.+|..++++|+|.+|.++.+.+++.+|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            47788999999988875   45799999999998984 588999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHH
Q psy1039         122 SRLFAIVTKR  131 (206)
Q Consensus       122 ~~~~~~~~~~  131 (206)
                      ..+...+.+.
T Consensus       119 ~~Ie~ki~kd  128 (134)
T 3o48_A          119 SMVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            7776666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.29  E-value=8.7e-06  Score=57.48  Aligned_cols=116  Identities=10%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC------
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV------   77 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~------   77 (206)
                      ...++.-...++..|.|+.|+-....++.+..  |+   +......++.+|.+++..++|..|...|++++++.      
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            44577788899999999999999888777641  22   23456688999999999999999999999987541      


Q ss_pred             C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          78 P-------------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        78 p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      |                   ...+..|.+|.|+..++++++|+..++.+ ...-..+.+...+++++
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            1                   11268899999999999999999988754 22235667777777664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.26  E-value=5.1e-05  Score=63.37  Aligned_cols=163  Identities=9%  Similarity=-0.029  Sum_probs=112.2

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcH-------------------------------------H
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------------------------------E   45 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~-------------------------------------~   45 (206)
                      ...|..+..|...+..+...|+.+.|...|++|+..  |...                                     .
T Consensus       207 ~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~  284 (493)
T 2uy1_A          207 DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE  284 (493)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence            345778899999999999999999999999999987  4410                                     0


Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEPTNKAIQPVLSRL  124 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~  124 (206)
                      ...+|...+....+.+..+.|...|.++ ...+.....|...|..-...+ +.+.|...|+++++..|+++..+......
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            1123344444444567788899999998 444445667777777666666 58999999999999888888766555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         125 FAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ....++...        +..+|.++   +.....+......-...|..+.+.+.+
T Consensus       364 e~~~~~~~~--------aR~l~er~---~k~~~lw~~~~~fE~~~G~~~~~r~v~  407 (493)
T 2uy1_A          364 LLRIGDEEN--------ARALFKRL---EKTSRMWDSMIEYEFMVGSMELFRELV  407 (493)
T ss_dssp             HHHHTCHHH--------HHHHHHHS---CCBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHcCCHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444333332        55677777   335666777776666677666555545

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.24  E-value=1.3e-05  Score=54.25  Aligned_cols=83  Identities=10%  Similarity=0.013  Sum_probs=70.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYET---ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      ++...++.|+.|+.+.+.++..+   +|.+++..++.+.|  ...-.+++.+|..++++|+|.+|..+++.+++++|+|.
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            34567899999999999998887   99999998886523  12678899999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q psy1039          82 KALFRRCQ   89 (206)
Q Consensus        82 ~~~~~la~   89 (206)
                      .+.-.+..
T Consensus       109 QA~~Lk~~  116 (126)
T 1nzn_A          109 QAKELERL  116 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.20  E-value=6.6e-05  Score=51.61  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +....|+.|-++.+...   ..+++..++..+...|. ..+++|.+|..++++|+|.+|.++.+.+++.+|+|..+....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            47788999999988876   45799999999998884 678999999999999999999999999999999999887776


Q ss_pred             HHHHHHH
Q psy1039         122 SRLFAIV  128 (206)
Q Consensus       122 ~~~~~~~  128 (206)
                      ..+...+
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.18  E-value=5.4e-05  Score=52.51  Aligned_cols=114  Identities=8%  Similarity=-0.083  Sum_probs=95.8

Q ss_pred             cchhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDY------ETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~~p~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ..|++++.|+......-+.|+.      +.-++.|++|+..-+|..    .....+|...|.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            5799999999999999999999      889999999999883321    2245667777755 5669999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  118 (206)
                      +.++..+.+.|...|.--.+.|+...|.+.+.+++...|......
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            999888999999999999999999999999999999999865443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.12  E-value=3.4e-06  Score=65.19  Aligned_cols=77  Identities=13%  Similarity=0.020  Sum_probs=67.8

Q ss_pred             Ccccchh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHH
Q psy1039           1 MIDNNMN--DYNKLKESGNSAFKQ-----GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSK   72 (206)
Q Consensus         1 al~~~p~--~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~   72 (206)
                      |++++|+  ++.++..+|..|...     |+.++|..+|++|++++ |+.  +...++..|..+.. .|++++|...+++
T Consensus       189 AleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~k  265 (301)
T 3u64_A          189 ACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAH--DPDHHITYADALCIPLNNRAGFDEALDR  265 (301)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3567888  788999999999995     99999999999999999 961  38888899998877 5999999999999


Q ss_pred             HhhhCCCC
Q psy1039          73 SLEIVPDD   80 (206)
Q Consensus        73 al~l~p~~   80 (206)
                      ++..+|..
T Consensus       266 AL~a~p~~  273 (301)
T 3u64_A          266 ALAIDPES  273 (301)
T ss_dssp             HHHCCGGG
T ss_pred             HHcCCCCC
Confidence            99998863

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.03  E-value=0.00012  Score=49.74  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYE---TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .+++.|+.|+.+.+..+..   ++|.+++..++.+ |..  .-++++.+|..++++|+|++|..+++.++++.|+|..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            5678899999999988664   6899999999887 731  678899999999999999999999999999999998876


Q ss_pred             HHHHH
Q psy1039          85 FRRCQ   89 (206)
Q Consensus        85 ~~la~   89 (206)
                      -....
T Consensus       116 ~Lk~~  120 (134)
T 3o48_A          116 ALKSM  120 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.97  E-value=0.00019  Score=49.37  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYE---TALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      -..+..|+.|+.+.+..+..   +++.+++..++.. |..  .-++++.+|..++++|+|.+|..+++.++++.|+|..+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            46788999999999988765   6999999999987 732  67789999999999999999999999999999999877


Q ss_pred             HHHHH
Q psy1039          84 LFRRC   88 (206)
Q Consensus        84 ~~~la   88 (206)
                      .-...
T Consensus       114 ~~Lk~  118 (144)
T 1y8m_A          114 GALKS  118 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.76  E-value=0.0036  Score=52.32  Aligned_cols=155  Identities=11%  Similarity=-0.026  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhhhC-CCC
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLEIV-PDD   80 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~-p~~   80 (206)
                      +...=..+.+.|+.++|+..|++..+.+- |+    ...|..+-.++...         +..++|.+.|++..... +.+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd  104 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN  104 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence            44455677899999999999999887531 55    34444444444333         34788999999876543 347


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV--EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPM  156 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (206)
                      ..+|..+-..+...|++++|...|++....  .| +......+-..+...++.+.        +..+|+.+..  ..++.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~--------A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADK--------AYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHH--------HHHHHHHHHhcCCCCCH
Confidence            788899999999999999999999988764  34 44555555555556566555        4457777666  46778


Q ss_pred             hhhHHHHhhhhHhcccchhhHHH
Q psy1039         157 DKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .....+...+...|+.++|.+.+
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll  198 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTL  198 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHH
Confidence            88889999999999999888877

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.75  E-value=0.0011  Score=55.19  Aligned_cols=136  Identities=9%  Similarity=-0.095  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH---------------
Q psy1039          26 ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA---------------   90 (206)
Q Consensus        26 ~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~---------------   90 (206)
                      ......|++++... |.   .+.+|...+..+...|+.+.|...|++|+.. |.+...++..+..               
T Consensus       196 ~Rv~~~ye~al~~~-p~---~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~  270 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YY---AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            45677999999999 98   7999999999999999999999999999999 9886555443332               


Q ss_pred             -------------------------HHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1039          91 -------------------------YEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTK-RMQENEQLQNKVH  143 (206)
Q Consensus        91 -------------------------~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~  143 (206)
                                               ....+..+.|...|+++ . .|. ...++...+.+....+. ..        .+.
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~--------~ar  340 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRA--------TPY  340 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSH--------HHH
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChH--------HHH
Confidence                                     22345567777777777 3 332 22233222333222221 11        245


Q ss_pred             HHHHHhcC-CCCChhhhHHHHhhhhHhcccchhh
Q psy1039         144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA  176 (206)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~  176 (206)
                      .+|+.++. .|.+...+...+......|+.+.|.
T Consensus       341 ~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR  374 (493)
T 2uy1_A          341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR  374 (493)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            56666666 5555566666666555555554433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.62  E-value=0.00014  Score=51.28  Aligned_cols=120  Identities=8%  Similarity=0.053  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---------KALFRRCQAYEAIGKFEEAYTDAKHIHRVE---PT  113 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~  113 (206)
                      +.+.++.-...++..|.|+.|+.....++.+..+++         .+++.+|.+++..|+|..|...|++++.+.   |.
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            456677777788899999999999999876643333         378899999999999999999999997743   23


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         114 NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                      ++.....+       +....  .     ..     ..+.+.+.+.+...+.|+..++++.+|+..+-.=|.
T Consensus        99 ~~s~~~~~-------~~~ss--~-----p~-----s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           99 TSKVRPST-------GNSAS--T-----PQ-----SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             -------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             CCCccccc-------cccCC--C-----cc-----cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            32221111       10000  0     00     112356788999999999999999999999865444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.34  E-value=0.0099  Score=47.98  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------c-----------HHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------S-----------HERATCLKNRAAVYLKQNQNDKVIEDCS   71 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~   71 (206)
                      +.+...|......|+.+.|...+.+|+.+..+.       .           .....+...++..+...|++.+++..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344455666667899999999999999986311       0           1223345567788889999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        72 ~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      +++..+|-+..++..+-.++...|+..+|...|+++-.
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987644

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.26  E-value=0.0031  Score=52.59  Aligned_cols=81  Identities=12%  Similarity=0.073  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        48 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      .++..+|........+..|..+|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++......+.+..++..+...
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46677888888888999999999999999999999999999999999999999999999999887888888888877765


Q ss_pred             H
Q psy1039         128 V  128 (206)
Q Consensus       128 ~  128 (206)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.20  E-value=0.013  Score=41.63  Aligned_cols=104  Identities=16%  Similarity=0.071  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh--h--C----
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE--I--V----   77 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l--~----   77 (206)
                      |..++--..++..++-.|.|..++-++.   .++      .....+..+.||.+.++|..|+..++..++  .  +    
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d  100 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLH---KLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD  100 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHH---TCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHH---hcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence            3344555677888999999998876554   344      567778899999999999999999999983  2  2    


Q ss_pred             ---------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039          78 ---------PDDPKA-LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        78 ---------p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  118 (206)
                               |.+-+. +..+|.+..+.|+.++|+.++.+....+|-.+.+.
T Consensus       101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                     333333 44579999999999999999999988887655444

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.06  E-value=0.0011  Score=58.50  Aligned_cols=68  Identities=41%  Similarity=0.685  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhcCCCCChhhhHHHHhhhhHhcccchhhHHHHhcchHHHHHHHhcccCChhhhhhhc
Q psy1039         138 LQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLALT  205 (206)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (206)
                      ...++.++|+-+++...+.+.+...++-+..+.|++.+++.+|++++..+++++++.++++++++++|
T Consensus         4 ~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~   71 (810)
T 3now_A            4 TSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMV   71 (810)
T ss_dssp             HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHH
Confidence            44568899999999889999999999999999999999999999999999999999449999999985

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.83  E-value=0.041  Score=45.89  Aligned_cols=98  Identities=11%  Similarity=0.095  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALF   85 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~   85 (206)
                      +...+..+-..+.+.|++++|..+|....+.+- |+    ...|..+-..|.+.|++++|...|++..+.. ..+...|.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~  179 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA  179 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            455778888899999999999999998776531 65    6667778888889999999999999987653 23677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          86 RRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        86 ~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      .+-.++...|++++|.+.+++..+
T Consensus       180 ~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          180 ALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHH
Confidence            899999999999999999988765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0065  Score=53.09  Aligned_cols=61  Identities=11%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      ..++..-+.-+...|+|+-|+...++|+..-|..-.+|+.|+.+|..+|+|+.|.-.+..+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4456666777788999999999999999999999999999999999999999999888766

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0051  Score=53.78  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ....+...+..+..+|+|+-|+.+.++|+... |.   ....|+.|+.||..+|+|+.|+-.++-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-Ps---eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LD---SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-ch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34567778889999999999999999999999 98   8999999999999999999999988876

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.70  E-value=0.04  Score=44.51  Aligned_cols=98  Identities=11%  Similarity=0.001  Sum_probs=77.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC---CCCHH----HH
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV---PDDPK----AL   84 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~~~----~~   84 (206)
                      .+|..|+..|+|.+|+..+.+..+-.+  .++....+.+......|...+++.++...+.++....   +.+|.    ..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            789999999999999999988887541  1244567788888999999999999999999887553   23332    33


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy1039          85 FRRCQAYE-AIGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        85 ~~la~~~~-~~g~~~~A~~~~~~al~~~  111 (206)
                      ..-|..+. ..++|..|...|-.++...
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            44588888 8999999999998887543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.024  Score=46.31  Aligned_cols=101  Identities=15%  Similarity=-0.009  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC--CCCHH----HH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPK----AL   84 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~----~~   84 (206)
                      ++..+|..++..|+++.|++.|.++.... .........+.....++...++|..+..++.++-.+.  ..++.    ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            46789999999999999999999998876 4333367788888889999999999999999986552  22332    33


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1039          85 FRRCQAYEAIGKFEEAYTDAKHIHRVEP  112 (206)
Q Consensus        85 ~~la~~~~~~g~~~~A~~~~~~al~~~p  112 (206)
                      ...|..+...++|..|...|-.++....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            4457888899999999999988876543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.52  E-value=0.045  Score=41.68  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      ..+++.|+.++|+......++.. |.   ++.....+-..+.-.|+|+.|...++.+.+++|+....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-Cc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            35678899999999999999999 98   88989999999999999999999999999999987543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.50  E-value=0.028  Score=42.81  Aligned_cols=71  Identities=17%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      .+++.|++++|++.+...++-+|.|.+....+-..++-.|+|+.|.+-++.+.+++|+.......+..+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~   76 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   76 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999998776655544433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.23  E-value=0.033  Score=46.44  Aligned_cols=79  Identities=15%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        11 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      .+..+|........+..|..+|.+|+.+. |+   +...+..+|......|+.-+|+-+|.+++.....++.+.-++...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CC---CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            45678999999999999999999999999 99   899999999999999999999999999998888888888888777


Q ss_pred             HHH
Q psy1039          91 YEA   93 (206)
Q Consensus        91 ~~~   93 (206)
                      +..
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.22  E-value=0.049  Score=50.02  Aligned_cols=172  Identities=13%  Similarity=0.053  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------------------cHHHHHHHHHHHHHHHHccCHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------------SHERATCLKNRAAVYLKQNQNDKV   66 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------------------~~~~~~~~~~la~~~~~~~~~~~A   66 (206)
                      |.++..-|.+|.+++..|++++|..+|.++......+                   ....+..|......+.+.+.++.+
T Consensus       839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v  918 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA  918 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence            3445566999999999999999999999875421010                   001234577788888999999999


Q ss_pred             HHHHHHHhhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH-----
Q psy1039          67 IEDCSKSLEIVP-DDPK----ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE-----  136 (206)
Q Consensus        67 ~~~~~~al~l~p-~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~-----  136 (206)
                      ++....|++..+ ++..    .|.++=..+..+|+|++|...+...    |+...-...+..+-..+=+..+...     
T Consensus       919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~~~r~~cLr~LV~~lce~~~~~~L~~lp  994 (1139)
T 4fhn_B          919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STTPLKKSCLLDFVNQLTKQGKINQLLNYS  994 (1139)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHSSSCHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred             HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhCCChhhhhCCC
Confidence            999999997754 3332    5667778899999999998776433    3222222333332222211111000     


Q ss_pred             --HHHHHHHHHH-HHhc---CCCCChhhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         137 --QLQNKVHNMF-KYVF---DTSAPMDKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       137 --~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                        .....+.... .++.   +......+..-+--+++..|++.+|++.++.
T Consensus       995 f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B          995 MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence              0011121121 1111   2222334556667777888999888888764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.04  E-value=0.057  Score=37.46  Aligned_cols=107  Identities=11%  Similarity=0.104  Sum_probs=75.0

Q ss_pred             cCcHHHHHHHHHHHHHHHHccCH------HHHHHHHHHHhhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1039          41 EESHERATCLKNRAAVYLKQNQN------DKVIEDCSKSLEIVPDD--------PKALFRRCQAYEAIGKFEEAYTDAKH  106 (206)
Q Consensus        41 p~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~l~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~  106 (206)
                      |+   +.+.|........+.|+.      ++-++.|++|+..-|..        ...|.+.|.. ...++.++|...|+.
T Consensus        10 p~---~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A           10 AN---NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             CC---SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            77   788899988888888998      89999999999776643        2345555643 667999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039         107 IHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus       107 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ++.+......++...+.-..+.++...        +...+.+++. .|.+.+..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~k--------ARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKK--------SKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHH--------HHHHHHHHhccCCCcHHHH
Confidence            999855554444444444333333333        6668888888 45544443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.79  E-value=0.13  Score=44.75  Aligned_cols=45  Identities=13%  Similarity=-0.097  Sum_probs=26.1

Q ss_pred             HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      ...|++++|.+.++..     ++...|..+|..+...|+++.|.++|.++
T Consensus       663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666666555432     24456666666666666666666666554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.64  E-value=0.37  Score=34.27  Aligned_cols=76  Identities=12%  Similarity=0.020  Sum_probs=59.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccc-cC-----------cHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALK--VTA-EE-----------SHERATCLKNRAAVYLKQNQNDKVIEDCS   71 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~~-p~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~   71 (206)
                      -+.+.+.+-.+.++....+|..|+.+.+..++  .+. |+           +....-.+..+|..+...|.-++|+.+|.
T Consensus        59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~  138 (242)
T 3kae_A           59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV  138 (242)
T ss_dssp             CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence            45678889999999999999999999999993  320 22           11133345668999999999999999999


Q ss_pred             HHhhhCCCCH
Q psy1039          72 KSLEIVPDDP   81 (206)
Q Consensus        72 ~al~l~p~~~   81 (206)
                      ......|-.+
T Consensus       139 ~Sf~~~~lf~  148 (242)
T 3kae_A          139 RSFGKSFLFS  148 (242)
T ss_dssp             HHHHHCCCHH
T ss_pred             hhcCCccccc
Confidence            9888876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.57  E-value=0.28  Score=42.60  Aligned_cols=26  Identities=12%  Similarity=0.045  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      ...|..+|..+.+.++++.|+.+|.+
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.6  Score=33.20  Aligned_cols=53  Identities=19%  Similarity=0.049  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      ....|.++   ...|+++.|.+.++..     ++...|-.+|......|+++-|..+|.++
T Consensus         8 ~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            8 PHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            34445454   4578888887777654     56777888888888888888888888776

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.79  E-value=1.2  Score=36.00  Aligned_cols=31  Identities=10%  Similarity=0.080  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVT   39 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~   39 (206)
                      ..+.+.+|..|...|++++-.+++.......
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   49 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFL   49 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4678999999999999999888877655543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.11  Score=43.23  Aligned_cols=110  Identities=15%  Similarity=0.066  Sum_probs=61.2

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALD----------FYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSK   72 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~----------~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   72 (206)
                      ++-.+..||..+.++-..|+....+.          .+-.+++....  +....+.++..+=..|...+.|++|....++
T Consensus       177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk  256 (523)
T 4b4t_S          177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK  256 (523)
T ss_dssp             --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence            44456667777777777776654321          22222222110  1123567777788899999999999999999


Q ss_pred             HhhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q psy1039          73 SLEIVPDD-------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA  116 (206)
Q Consensus        73 al~l~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  116 (206)
                      +.  .|.+       ...+|.+|.++.-.++|.+|.+++..|+...|.+..
T Consensus       257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            85  4432       345777899999999999999999999999887653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.27  Score=34.98  Aligned_cols=48  Identities=17%  Similarity=0.120  Sum_probs=33.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ...+..|+++.|.+..+.   ++      +...|..+|...+..|+++-|..+|.++
T Consensus        13 ~LAL~lg~l~~A~e~a~~---l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKK---LN------DSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHH---HC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHH---hC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            344567888888766543   23      3567888888888888888888887764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.39  E-value=0.18  Score=40.52  Aligned_cols=62  Identities=5%  Similarity=0.005  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039          10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus        10 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      .+...++..+...|++.+|+..+..++..+ |-   +-.++..+-.++...|+..+|+..|+++.+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PY---REPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667788899999999999999999999 97   678899999999999999999999988654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.14  E-value=1.4  Score=40.09  Aligned_cols=97  Identities=5%  Similarity=-0.125  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC-CCCHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALK-----VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPK   82 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~   82 (206)
                      ...+..+-..|.+.|+.++|...|....+     .. |+    ...|..+-..|.+.|++++|.+.|++..... ..|.-
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv  201 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL  201 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence            44677788899999999999999966432     34 75    6778888889999999999999999987542 34777


Q ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHhc
Q psy1039          83 ALFRRCQAYEAIGKF-EEAYTDAKHIHRV  110 (206)
Q Consensus        83 ~~~~la~~~~~~g~~-~~A~~~~~~al~~  110 (206)
                      .|..+-.++.+.|+. ++|.+.++.....
T Consensus       202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          202 SYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            888888899999984 7888888777663

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.53  E-value=2.6  Score=34.45  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh---hCCCCH-
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE---IVPDDP-   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---l~p~~~-   81 (206)
                      .+.....++..+...|++.+|...+.....-...  +.......+......+...++|..|...++++..   -.+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4556678999999999999999998886542101  2234567788888899999999999999998642   233333 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          82 ---KALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        82 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                         ..+...|..+...++|.+|..+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               34556689999999999999999887764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.18  E-value=0.77  Score=42.20  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-hCC---------------
Q psy1039          15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVP---------------   78 (206)
Q Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~p---------------   78 (206)
                      +...+...|.++-+..+    +... |.   ++...+.+|.+++..|++++|..+|.++-. +.+               
T Consensus       818 l~~~l~~~~~~~~~~~l----~~~~-~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQL----IGWL-NS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHH----HHHS-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHH----hhhc-cC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            34456666777665442    2334 44   455568899999999999999999988632 111               


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hh----HHHHHHHHHHHHHHHHHH
Q psy1039          79 -------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-KA----IQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        79 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~~~~l~~~~~~~~~~~~~  134 (206)
                             ..+..|+....++...+.++.+++..+.|++..+.+ +.    .+..+-.....++.++++
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence                   113456677888899999999999999999876544 32    334444444555555553

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.54  E-value=0.95  Score=38.76  Aligned_cols=89  Identities=6%  Similarity=-0.023  Sum_probs=58.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g   95 (206)
                      |..++..+...++...+.+..... ++   ....-...+.+ ++.|++..|..+|.+.-.-.+......|++|.++..+|
T Consensus       259 a~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g  333 (618)
T 1qsa_A          259 AWRLMGNDVTDEQAKWRDDAIMRS-QS---TSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG  333 (618)
T ss_dssp             HHTSCSTTCCHHHHHHHHHHHHTC-CC---HHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCChHHHHHHHhccccC-CC---hHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC
Confidence            333344443445566666654433 33   22222223333 46699999999998765544456888999999999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy1039          96 KFEEAYTDAKHIHR  109 (206)
Q Consensus        96 ~~~~A~~~~~~al~  109 (206)
                      +-++|...|+++..
T Consensus       334 ~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          334 REAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999888765

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=89.16  E-value=2.7  Score=26.06  Aligned_cols=50  Identities=20%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY   57 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~   57 (206)
                      +.+......|..+++.++|.+|+..|+++..+. .+..+....-+.++.|-
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ki~~fyl~ec~  100 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIKKIASFYLEECR  100 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHHHHHHHHHHHHH
Confidence            567777788888888888888888888888665 44222222225555554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.98  E-value=4.1  Score=27.89  Aligned_cols=60  Identities=20%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             HHHHHH-HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          50 LKNRAA-VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        50 ~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      ++.+|. .+..+|+-++-...+...+.-+|-++..++.+|.+|.+.|+..+|.+.+.+|=+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444 334556666666666665566667788888888888888888888877776654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.92  E-value=2  Score=34.92  Aligned_cols=62  Identities=10%  Similarity=0.010  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVP---DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        49 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      ++..+|..|+..|++++|.+.|.++.....   ...+.++....+....++|..+...+.++..+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            467899999999999999999999876533   34678889999999999999999999998765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.99  E-value=3.5  Score=37.15  Aligned_cols=98  Identities=10%  Similarity=0.083  Sum_probs=72.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh-hCCC-------------
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPD-------------   79 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~p~-------------   79 (206)
                      .+...+...|.++-|.    ..+... |.   ++..-|.+|.++...|++++|..+|.+|-. +.+.             
T Consensus       815 ~l~~~L~~~~~~~~a~----eL~~~~-~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l  886 (950)
T 4gq2_M          815 ELVEKLFLFKQYNACM----QLIGWL-NS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI  886 (950)
T ss_dssp             HHHHHHHHTTCHHHHH----HHGGGC-CS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred             HHHHHHHHhcHHHHHH----HHHhhc-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence            4667778888887653    344555 65   556668899999999999999999998642 2111             


Q ss_pred             ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHH
Q psy1039          80 ---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV-EPTNKAIQP  119 (206)
Q Consensus        80 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  119 (206)
                               ....|.....++...+-++-++...+.|+.. .++++....
T Consensus       887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~  936 (950)
T 4gq2_M          887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI  936 (950)
T ss_dssp             HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred             cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence                     1235777899999999999999999999974 455655433

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.58  E-value=1.6  Score=26.06  Aligned_cols=29  Identities=34%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039          13 KESGNSAFKQGDYETALDFYTKALKVTAEE   42 (206)
Q Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~p~   42 (206)
                      -.+|..+...|++++|+.+|-+|+... |+
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc-~q   49 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVC-GQ   49 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-SS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHc-CC
Confidence            357999999999999999999999999 87

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.53  E-value=11  Score=33.86  Aligned_cols=52  Identities=13%  Similarity=0.084  Sum_probs=40.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039          53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        53 la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  108 (206)
                      +...+...|.++-+    ...+..-|.++..-|-+|.++...|++++|..+|+++-
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA  867 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  867 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            45555677777654    34567788888888889999999999999999998764

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=85.32  E-value=1.8  Score=27.00  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKAL   36 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al   36 (206)
                      .+...-.++..+...|+|++||++.+++.
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            34455555666666666666665555544

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2

Probab=85.17  E-value=4.7  Score=29.93  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             CCChhhhHHHHhhhhHhcccchhhHHHHhcch---HHHHHHHhcccCChhhhhhhc
Q psy1039         153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV---AKQINTLLKCETNEEIYLALT  205 (206)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  205 (206)
                      .............+..+|+.+.|.+-++++-.   ...+.++ ..+.|+..|++.+
T Consensus        88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l-~~~gd~~~Yi~~L  142 (235)
T 2d2s_A           88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI-GSVDNPTNYLTQL  142 (235)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC---CCSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh-cccCCHHHHHHHH
Confidence            44566677788999999999999999998877   4444444 5578888887653

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.89  E-value=1.9  Score=26.47  Aligned_cols=29  Identities=31%  Similarity=0.346  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALK   37 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~   37 (206)
                      +..+...|...=+.|+|++|+.+|..+++
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444445555555555555555555544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.28  E-value=12  Score=32.04  Aligned_cols=124  Identities=9%  Similarity=-0.021  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY   91 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~   91 (206)
                      ....+...+...+.+.|...+........-+.......+..+|.-....+...++..++.+.....+ +....-.++...
T Consensus       217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~A  295 (618)
T 1qsa_A          217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMA  295 (618)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHH
Confidence            3344566666678899999988765432012111233344444444444546678888887665443 333344444455


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy1039          92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus        92 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                      ...|+++.|...|.+.-.-.+..+.....+++.....++..++..
T Consensus       296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~  340 (618)
T 1qsa_A          296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE  340 (618)
T ss_dssp             HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence            677999999999987655333557778888888877776666443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.95  E-value=2.5  Score=25.86  Aligned_cols=29  Identities=31%  Similarity=0.400  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALK   37 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~   37 (206)
                      +..+...|...=+.|+|++|+.+|..+++
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444445555555555555555555444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.66  E-value=15  Score=28.48  Aligned_cols=39  Identities=8%  Similarity=-0.113  Sum_probs=30.4

Q ss_pred             HHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         142 VHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      +..+-.+.-+ .-++.......|..+..-+++.+|..++.
T Consensus       119 ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          119 MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4445555544 45888999999999999999988888886

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=82.38  E-value=2.9  Score=26.33  Aligned_cols=28  Identities=36%  Similarity=0.620  Sum_probs=25.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTAEE   42 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~   42 (206)
                      .+|..+...|+++.|+.+|-+|+.++ |+
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc-~q   52 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVC-GQ   52 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHH-SC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHc-CC
Confidence            57889999999999999999999998 87

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.40  E-value=4.7  Score=33.68  Aligned_cols=71  Identities=14%  Similarity=0.078  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ..+..+..+=..|+..+.|++|..+..++.  . |.    .......++..|.++...++|.+|.+++..|+...|.+
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--Y-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--S-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--C-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            345667777888999999999999999985  3 42    12346778889999999999999999999999987754

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.96  E-value=3.4  Score=25.48  Aligned_cols=30  Identities=13%  Similarity=0.197  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKV   38 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   38 (206)
                      +..+...|...-..|+|++|+.+|..+++.
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555555556666666666666666553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.70  E-value=18  Score=33.09  Aligned_cols=68  Identities=10%  Similarity=-0.117  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--EPTN  114 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~  114 (206)
                      ...|..+-.+|.+.|+.++|...|....+.    -..+.-.|..+-..+...|++++|.+.|++....  .|+.
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv  200 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL  200 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence            345677888899999999999999765432    3457788999999999999999999999988763  4543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-10
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-08
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-08
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	8e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-07
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	8e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	7e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKA-----------LKVTAEESHERATCLKNRAAVYL 58
             +KE G   FK G Y  A+  Y K             K +            N A  YL
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K  +  K +E C K+L +   + K L+RR +A   + +FE A  D + +  V P NKA +
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             +        K  + NE+ +    NMFK
Sbjct: 136 LQIFMCQK---KAKEHNERDRRTYANMFK 161

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 5e-10
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
            E  +  ++ GD+E A     +  +    +  +    L   ++++ +  + D+     +
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 72 KSLEIVPDDPKALFRRCQAY 91
           +++  P   +A       Y
Sbjct: 58 LAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 1   MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ 60
            +       + L    N   +QG+ E A+  Y KAL+V      E A    N A+V  +Q
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQ 352

Query: 61  NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95
            +  + +    +++ I P    A        + + 
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           I+   +  +      N+  ++G    A D Y  AL++        A  L N A +  +Q 
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQG 319

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
             ++ +    K+LE+ P+   A        +  GK +EA    K   R+ PT 
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-09
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +  + N  +     GN   +   ++ A+  Y +        S   A    N A VY +Q 
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR----ALSLSPNHAVVHGNLACVYYEQG 251

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
             D  I+   +++E+ P  P A      A +  G   EA        R+ PT+      L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 122 SRLF 125
           + + 
Sbjct: 312 ANIK 315

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 8/99 (8%), Positives = 26/99 (26%)

Query: 50  LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
               A    +    +     C +     PD+   L      +    + + +   +    +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148
             P        L  ++    +  +  E  ++ +     +
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 10/65 (15%), Positives = 18/65 (27%)

Query: 45  ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104
             A    N   V+  Q +    I    K++ + P+   A        +    F+ A    
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 105 KHIHR 109
                
Sbjct: 227 LRALS 231

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 5e-10
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           D  +    +LK   N  FK  DYE A+ FY++      E +   A    NR+  YL+   
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQ----AIELNPSNAIYYGNRSLAYLRTEC 59

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
               + D ++++E+     K  +RR  +  A+GKF  A  D + + +V+P +K  +    
Sbjct: 60  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 119

Query: 123 RLFAIVTKRMQEN 135
               IV ++  E 
Sbjct: 120 ECNKIVKQKAFER 132

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 8e-10
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
            +LKE GN  F    Y  A   Y +A+      +   A    NRA  YLK  Q ++ + D
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
           C ++LE+     KA F   Q    +  ++EA  + +  + +    +
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
            L   G  A  + D++ ALD ++      +           N   +Y       +  +  
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-------ICFNIGCMYTILKNMTEAEKAF 59

Query: 71  SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117
           ++S+        A F+R   Y    K++ A  D K        N+ I
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 106

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
            + ++    K  + G  + KQ      +   + +     +       CL +   +   +N
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------CLVHLGDIARYRN 166

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           Q  +       + ++VP + +   +      + G     
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 11  KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
           K KE GN A+K+ D++TAL  Y KA     E      T + N+AAVY ++   +K  E C
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 71  SKSLEIVPDDP-------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
            K++E+  ++        KA  R   +Y    K+++A            T   ++
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-08
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
           N+LKE GN A   G+ + AL  Y++A+K+        +      A     Q   +   + 
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 70  CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126
                ++ PD  K   R+  A E + +FEEA    +   + E  N  ++  L  + A
Sbjct: 64  V----DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 15/123 (12%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 16  GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
             +A  +G  + AL+   +A+    + S + A+   +   +       ++  E   +S++
Sbjct: 3   WKNALSEGQLQQALELLIEAI----KASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58

Query: 76  IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135
           + P+      +     +A    ++    A     +    +  + ++S   ++V++  ++ 
Sbjct: 59  LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV 118

Query: 136 EQL 138
            +L
Sbjct: 119 SEL 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 13/87 (14%), Positives = 24/87 (27%)

Query: 57  YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116
            L + Q  + +E   ++++  P D        +     G FE A        ++ P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 117 IQPVLSRLFAIVTKRMQENEQLQNKVH 143
               L  L      R    +       
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKV 92

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALK------------VTAEESHERATCL 50
           +  +     +KE GN  FK+ +   A+  Y +AL             +  ++ +   +C 
Sbjct: 11  EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 70

Query: 51  KNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110
            N A  Y K     K I+  SK L+I  ++ KAL++   A    G  EEA  +      +
Sbjct: 71  LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130

Query: 111 EPTNKAIQPVLSRL 124
            P N  I+      
Sbjct: 131 NPNNLDIRNSYELC 144

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 8e-08
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKA------------LKVTAEESHERATC 49
           +D  +     LK  GN+ FK  ++E A+  YTK                 A+      +C
Sbjct: 20  VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 79

Query: 50  LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109
           + N  A  LK +     ++ C ++LEI P + KAL+RR Q ++ + ++++A  D K    
Sbjct: 80  VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139

Query: 110 VEPTNKAIQPVLSRLFAIVTKRMQ 133
           + P +KAIQ  L ++   +  +  
Sbjct: 140 IAPEDKAIQAELLKVKQKIKAQKD 163

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 4/145 (2%)

Query: 3   DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
           +N + D+ +  E G    ++GD   A+  +  A++    +  +     +       +  Q
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQ 68

Query: 63  NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122
               I    + LE+ PD+  AL     ++       +A    +   R  P    +     
Sbjct: 69  ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128

Query: 123 RLFAIVTKRMQENEQLQNKVHNMFK 147
                      +         ++F 
Sbjct: 129 EGAGGAGLGPSKRILGSLLSDSLFL 153

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 4/140 (2%)

Query: 2   IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN 61
           +D    D +     G      G+Y    D                        A     N
Sbjct: 165 LDPTSIDPDVQCGLGVLFNLSGEY----DKAVDCFTAALSVRPNDYLLWNKLGATLANGN 220

Query: 62  QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
           Q+++ +    ++LE+ P   ++ +    +   +G   EA         ++  ++  +   
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 122 SRLFAIVTKRMQENEQLQNK 141
             +   +   ++    +  +
Sbjct: 281 GAMSENIWSTLRLALSMLGQ 300

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 10  NKLKESGNSAFKQGDYETALDFYTKALKVTAEES-----------HERATCLKNRAAVYL 58
             +KE G   FK+G Y+ AL  Y K +     ES             R     N A  +L
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 59  KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
           K       IE C+K+LE+  ++ K L RR +A+ A+  FE A  D + + ++ P NKA +
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133

Query: 119 PVLSRLFAIVTKRMQENEQLQNKVHNMFK 147
             L+       +  ++  + +    NMF+
Sbjct: 134 TQLAVCQQ---RIRRQLAREKKLYANMFE 159

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 14 ESGNSAFKQGDYETALDFYTKALK---VTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
          E G  A+ + DY     +  +AL+        + ++ + L   +    +Q   DK +   
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGK 96
           K LE+ P+  +A          + K
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYIMAK 95

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 37/126 (29%)

Query: 25  YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84
            E  L    + L   A    ERA  L  R  +Y           D S++L I PD P+  
Sbjct: 15  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 74

Query: 85  FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144
                     G F+ AY     +  ++PT                +     + L     +
Sbjct: 75  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134

Query: 145 MFKYVF 150
                F
Sbjct: 135 DPNDPF 140

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 18/107 (16%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAEESH------------------ERATCLKNR 53
            K +G  A   G +E A    + AL+                         ++      +
Sbjct: 14  EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAK 73

Query: 54  AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
           A   +   +   VI +        P       +   AY    +  +A
Sbjct: 74  AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 12  LKESGNSAFKQGDYETALDFYTKALKVTAE--------ESHERATCLKNRAAVYLKQNQN 63
                      G+Y+ A     +A++++           +   A C    A         
Sbjct: 12  ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 71

Query: 64  DKVIEDCSKSLEIVPDDPKA-----------LFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
           D+ +    K+L       +            ++ R  A + +G+  EA  + K +  +  
Sbjct: 72  DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131

Query: 113 TNKAIQPVLSRLFAIVTKRMQ 133
             K   P   R+  +   R+ 
Sbjct: 132 ERKGETPGKERMMEVAIDRIA 152

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 12/134 (8%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 19  AFKQGDYETALDFYTKALKVTAEESH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI- 76
           A   G+ + A      AL+         R         V   + +  + +    ++ ++ 
Sbjct: 22  AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 77  --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134
                   AL+   Q  E +       T  +   +              +   + +   +
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 141

Query: 135 NEQLQNKVHNMFKY 148
                 ++      
Sbjct: 142 LLWAWARLDEAEAS 155

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 52  NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRV 110
              AV  +  ++++  +    ++E+   +      R    +++ K   E       I   
Sbjct: 48  YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107

Query: 111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150
           +P N  +      L   +    QE E + + ++   K   
Sbjct: 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.84
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.83
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.81
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.45
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.4
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.28
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.05
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.89
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.85
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.71
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.27
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.2
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.13
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.03
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.15
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.13
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.99
d2d2sa1	229	Exocyst complex component EXO84 {Baker's yeast (Sa	83.24
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	81.99
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.32
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	80.64

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=136.20  Aligned_cols=115  Identities=31%  Similarity=0.448  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ....+...|+.++..|+|++|+.+|.++++.+ |+   ++.+|.++|.+|..+|++.+|+..|+++++++|+++.+|+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH
Confidence            45678899999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      |.++..+|++++|+..|+++++++|+++.+...++++..
T Consensus        78 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999988753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.88  E-value=1.1e-20  Score=135.10  Aligned_cols=142  Identities=27%  Similarity=0.350  Sum_probs=124.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ...+..+...|+.++..|+|.+|+..|.+++... |.            ......++.++|.||+++|+|.+|+.+|+++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            4568899999999999999999999999999866 43            1335667889999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +.++|.+..+++++|.++..+|++++|+.+|++++.++|+++.+...++.+...+++..+...   .....+|+++.+
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k---k~~~~~f~~~~~  165 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR---RTYANMFKKFAE  165 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999999887776554332   235677777766

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.8e-21  Score=144.76  Aligned_cols=122  Identities=16%  Similarity=0.051  Sum_probs=113.9

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      .+|..+..++.+|.+|+..|++++|+..|+++++++ |+   ++.+|+++|.++..+|++++|+..|+++++++|+++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  107 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  107 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CC---CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhh
Confidence            367789999999999999999999999999999999 99   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        84 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      ++++|.++..+|++++|...|+++++.+|++......++......+
T Consensus       108 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999887777665554444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.5e-21  Score=134.95  Aligned_cols=120  Identities=28%  Similarity=0.462  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..++.+...|+.+++.|+|++|+.+|+++++++ |+   +..+|.++|.|++.+|++++|+..|+++++++|.++.+|+.
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc-hh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            457789999999999999999999999999999 99   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK  130 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  130 (206)
                      +|.++..+|++++|+..+++++.++|+++.+...++.+...++.
T Consensus        84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          84 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988887665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-20  Score=132.26  Aligned_cols=139  Identities=29%  Similarity=0.372  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES------------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE   75 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   75 (206)
                      .+..+...|+.++..|+|++|+..|+++++.. |..            .....++.++|.||+++|+|++|+.++++++.
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            47788899999999999999999999999997 641            34566788999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        76 l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      ++|.++.+++++|.++..+|++++|+..|++++.++|+++.+...++.+...+++.......   ....+|+++.
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~---~~~~~f~~~~  162 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK---LYANMFERLA  162 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998877766554431   2345555544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.86  E-value=2.1e-20  Score=131.61  Aligned_cols=124  Identities=26%  Similarity=0.314  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------HERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      +.+..+...|..++..|+|.+|+..|.++++.. |..             .....++.++|.||+++|++.+|+.+|+++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            557788999999999999999999999999877 531             234567889999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      ++++|.+..+|+++|.++..+|++++|+.+|++++.++|+|+.+...+..+...+++.
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887766543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-20  Score=145.77  Aligned_cols=166  Identities=12%  Similarity=0.152  Sum_probs=131.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC--
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--   79 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--   79 (206)
                      ++.+|+++.+|+.+|.++...|++++|+.+|.++++++ |+   +...+..+|.++...|++++|+..+++++..+|+  
T Consensus        46 l~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          46 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cc---cccccccccccccccccccccccchhhHHHhccchH
Confidence            56678888888888888888888888888888888888 87   6778888888888888887777777666655443  


Q ss_pred             -------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          80 -------------------------------------------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        80 -------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                                                                       ++.++..+|.++...|++++|+..|++++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  201 (323)
T d1fcha_         122 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV  201 (323)
T ss_dssp             GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc
Confidence                                                             1334667788888888888888888888888


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       111 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +|+++.++..++.++...++..+        +..+|++++. .|.....+..+|.++...|++++|+..+
T Consensus       202 ~p~~~~~~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         202 RPNDYLLWNKLGATLANGNQSEE--------AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccchhhhhhcccccccchh--------HHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            88888888888888888777777        4457777777 7888888888999999999988888887

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-20  Score=148.32  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=142.0

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|+++.++..+|.++...|++++|+..|.+++... |.   ....+..+|.++...|++++|+..|+++++++|+++
T Consensus       196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  271 (388)
T d1w3ba_         196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP  271 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred             HHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34577788888888888888888888888888888887 77   677788888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV  160 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (206)
                      .+++.+|.++...|++++|...+++++...|.+......++.++...++..+        +..+|++++. .|.+...+.
T Consensus       272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------A~~~~~~al~~~p~~~~~~~  343 (388)
T d1w3ba_         272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE--------AVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHH--------HHHHHHHHHHhCCCCHHHHH
Confidence            8888888888888888888888888888888888888888888877777666        5568999988 788999999


Q ss_pred             HHHhhhhHhcccchhhHHH
Q psy1039         161 TAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       161 ~~~~~~~~~~~~~~a~~~~  179 (206)
                      .+|.++...|++++|...+
T Consensus       344 ~la~~~~~~g~~~~A~~~~  362 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999988

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=147.93  Aligned_cols=159  Identities=8%  Similarity=-0.063  Sum_probs=131.2

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHhhhCCCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~   80 (206)
                      |..+|+..+++..+|.++.+.+.+++|+..++++++++ |+   +..+|.++|.++..+|+ +++|+.+++++++++|++
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~  111 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  111 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh
Confidence            34578888888888888888888888888888888888 88   78888888888888764 888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhh
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR  159 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (206)
                      ..+|+.+|.++..+|++++|+..+.++++++|++..++..++.++..+++...        +...|++++. .|.+...+
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~--------Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN--------ELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT--------HHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHCCccHHHH
Confidence            88888888888888888888888888888888888888888888888877766        4457888877 77777777


Q ss_pred             HHHHhhhhHhccc
Q psy1039         160 VTAVNNLVVLARE  172 (206)
Q Consensus       160 ~~~~~~~~~~~~~  172 (206)
                      ...+.++...+++
T Consensus       184 ~~r~~~l~~~~~~  196 (315)
T d2h6fa1         184 NQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTTCS
T ss_pred             HHHHHHHHHcccc
Confidence            7777776666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=7.9e-21  Score=138.53  Aligned_cols=106  Identities=26%  Similarity=0.371  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      .++.+...|+.++..|+|++|+.+|++++.++ |+   ++.+|.++|.||...|+|++|+.+|+++++++|+++.+|+++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence            56788999999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAI  117 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  117 (206)
                      |.++..+|++++|+..|++++.++|++...
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            999999999999999999999999876544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.9e-20  Score=146.60  Aligned_cols=163  Identities=8%  Similarity=-0.004  Sum_probs=141.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD   79 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~   79 (206)
                      ||..+|++..+|+.+|.++...| ++++|+..++++++.+ |+   +..+|.++|.++..+|++++|+..|+++++++|.
T Consensus        69 ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~---~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          69 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hh---hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence            46789999999999999999977 5999999999999999 99   8999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhh
Q psy1039          80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDK  158 (206)
Q Consensus        80 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (206)
                      +..+|+++|.++..+|++++|+..++++++++|.+..++..++.+...++......  ....+...+.+++. .|.+...
T Consensus       145 n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~--~~~~ai~~~~~al~~~P~~~~~  222 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA--VLEREVQYTLEMIKLVPHNESA  222 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH--HHHHHHHHHHHHHHHSTTCHHH
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh--hhHHhHHHHHHHHHhCCCchHH
Confidence            99999999999999999999999999999999999999999998877655422111  11124557777777 7888888


Q ss_pred             hHHHHhhhhHh
Q psy1039         159 RVTAVNNLVVL  169 (206)
Q Consensus       159 ~~~~~~~~~~~  169 (206)
                      +.-.+..+...
T Consensus       223 ~~~l~~ll~~~  233 (315)
T d2h6fa1         223 WNYLKGILQDR  233 (315)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHhc
Confidence            87777665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=2.1e-19  Score=128.27  Aligned_cols=127  Identities=30%  Similarity=0.500  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC-------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~-------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      ..+..+...|..++..|+|.+|+..|.+++... +.             .+....++.++|.|+.++|+|++|+..|+++
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            345667889999999999999999999999764 32             1347778999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHH
Q psy1039          74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE  134 (206)
Q Consensus        74 l~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  134 (206)
                      ++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+...+..+...++...+.
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988877766553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-20  Score=143.61  Aligned_cols=157  Identities=16%  Similarity=0.128  Sum_probs=147.8

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|..+..+..+|.++...|++++|+..|+++++++ |+   ++.++..+|.++...|++.+|+..+++++...|.+..
T Consensus       231 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  306 (388)
T d1w3ba_         231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD  306 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch
Confidence            3467888999999999999999999999999999999 98   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT  161 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (206)
                      .+..+|.++...|++++|+..|+++++++|+++.++..++.++...++..+        +..+|++++. .|.+...+..
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--------A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE--------ALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH--------HHHHHHHHHTTCTTCHHHHHH
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999988888        5559999998 7899999999


Q ss_pred             HHhhhhHhcc
Q psy1039         162 AVNNLVVLAR  171 (206)
Q Consensus       162 ~~~~~~~~~~  171 (206)
                      ++.+|..+|+
T Consensus       379 lg~~~~~~~D  388 (388)
T d1w3ba_         379 MGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHcCC
Confidence            9999988774

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.5e-19  Score=136.94  Aligned_cols=160  Identities=15%  Similarity=0.135  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      +....+..|..++..|++++|+.+|+++++.+ |+   ++.+|+.+|.++...|++++|+..|.++++++|++..+++.+
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   93 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL   93 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccc
Confidence            44556899999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHH-------------------------------------------------
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ-------------------------------------------------  118 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------------------------------------------  118 (206)
                      |.++...|++++|...+++++..+|.+....                                                 
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~  173 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  173 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             cccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999999998888653221                                                 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         119 --PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       119 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                        ..++.++...++..        .+..+|++++. .|.+...+..+|.++...|++++|.+.+
T Consensus       174 ~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYD--------KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHh--------hhhcccccccccccccccchhhhhhcccccccchhHHHHH
Confidence              11111111111111        24566777776 6777888888888888888888887777

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.9e-18  Score=122.53  Aligned_cols=133  Identities=17%  Similarity=0.172  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      .+..+++.|..++..|+|+.|++.|.++   . |.   ++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~-~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~   76 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---Q-DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR   76 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---S-SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---C-CC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            3456778999999999999999999864   4 33   467899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          88 CQAYEAIGKFEEAYTDAKHIHRVEPTNK----------------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        88 a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      |.++..+|++++|+..|++++...|.++                .+...++.++..+++..+        +...+.+++.
T Consensus        77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~--------A~~~l~~A~~  148 (192)
T d1hh8a_          77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK--------AEEQLALATS  148 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHT
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHh
Confidence            9999999999999999999998877653                445677888777777777        4457888887


Q ss_pred             -CCCC
Q psy1039         152 -TSAP  155 (206)
Q Consensus       152 -~~~~  155 (206)
                       .+..
T Consensus       149 ~~~~~  153 (192)
T d1hh8a_         149 MKSEP  153 (192)
T ss_dssp             TCCSG
T ss_pred             cCCCc
Confidence             3443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-18  Score=117.37  Aligned_cols=115  Identities=29%  Similarity=0.358  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH------
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------   81 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~------   81 (206)
                      .+..+.++|+.++..|+|++|+.+|+++++++ |+   ++.++.++|.+|..+|+|++|+.+|+++++++|.++      
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence            46778899999999999999999999999999 98   899999999999999999999999999999998775      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          82 -KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        82 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                       .+++++|.++..++++++|+..|++++..+|+ +++...+..+...
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~  124 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI  124 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence             46778888999999999999999999998874 5565555554433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.75  E-value=6.7e-18  Score=112.41  Aligned_cols=96  Identities=11%  Similarity=0.046  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC   88 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la   88 (206)
                      ....+..|..+++.|++++|+..|++++..+ |+   ++.+|..+|.++...|++.+|+.+|+++++++|+++.+++.+|
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccc-cc---cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            3456889999999999999999999999999 99   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q psy1039          89 QAYEAIGKFEEAYTDAKHIH  108 (206)
Q Consensus        89 ~~~~~~g~~~~A~~~~~~al  108 (206)
                      .+|...|++++|++.+++.+
T Consensus        92 ~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.6e-18  Score=114.89  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHhhhCCCC--HHHHHH
Q psy1039          12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ---NQNDKVIEDCSKSLEIVPDD--PKALFR   86 (206)
Q Consensus        12 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~l~p~~--~~~~~~   86 (206)
                      +..+.+.++..+++++|.+.|++++.++ |+   ++.+++++|.|+.+.   +++.+|+..|++++..+|.+  ..+++.
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~   77 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAG-SV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS-CC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            3467888999999999999999999999 99   899999999999874   45668999999999998765  568999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        87 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      +|.+|..+|++++|+++|+++++++|++..+....+.+...++
T Consensus        78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999988887776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.6e-16  Score=119.48  Aligned_cols=140  Identities=16%  Similarity=0.125  Sum_probs=117.6

Q ss_pred             cCCHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1039          22 QGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA  100 (206)
Q Consensus        22 ~g~~~~A~~~~~~al~~~~p-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A  100 (206)
                      .++++.|+..+.+++... + ..+..+.+++++|.+|...|++++|+..|++++.++|+++.+|+++|.++..+|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~-~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            345677888888988754 2 23347889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhc
Q psy1039         101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLA  170 (206)
Q Consensus       101 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (206)
                      +..|++++.++|+++.++..++.++..+++...        +...|++++. .|.+.......+......+
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~--------A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL--------AQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHH--------HHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999888877        4457777777 6666655555554444444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-16  Score=115.19  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----   80 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----   80 (206)
                      .|.++..|+++|.+++..|++++|+.+|+++++++ |+   .+.+|+++|.++..+|++++|+..|++++...|.+    
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~---~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~  107 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID  107 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hh---hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH
Confidence            45567899999999999999999999999999999 99   89999999999999999999999999999876543    


Q ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1039          81 ------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN  114 (206)
Q Consensus        81 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  114 (206)
                                  ..+++++|.++..+|++++|.+.+.+++.+.|+.
T Consensus       108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                        4789999999999999999999999999998874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=4.5e-17  Score=113.26  Aligned_cols=113  Identities=16%  Similarity=0.085  Sum_probs=99.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHhhhCCCCHHHHHH
Q psy1039          17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----------NQNDKVIEDCSKSLEIVPDDPKALFR   86 (206)
Q Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~l~p~~~~~~~~   86 (206)
                      ..+-+.+.|++|+..|+++++++ |+   ++.+++++|.++...          +.+++|+..|+++++++|+++.+|++
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~-P~---~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~   80 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSN-PL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC   80 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhC-Cc---chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence            34566778999999999999999 99   999999999999854          55689999999999999999999999


Q ss_pred             HHHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy1039          87 RCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ  133 (206)
Q Consensus        87 la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  133 (206)
                      +|.+|..+|+           |++|.+.|++++.++|++..++..++......+...+
T Consensus        81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999988764           7999999999999999999999999888766554444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-15  Score=102.12  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      ..-+...|..++..|+|++|+..|+++++++|.++.+|+.+|.++..+|++++|+..+.+++.++|+++.++..++.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhh
Q psy1039         127 IVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNN  165 (206)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (206)
                      .+++...        +...|++++. .|.+..+...++++
T Consensus        83 ~~~~~~~--------A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          83 FLNRFEE--------AKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HTTCHHH--------HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HccCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999988        5559999998 78888877776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-15  Score=106.73  Aligned_cols=124  Identities=17%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..+...|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|...|+++++++|++..++..++.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh--hHhcccchhhH
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL--VVLAREMSGAE  177 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~a~~  177 (206)
                      ..+++...        +...|++++. .|.+.........+.  ...+.+..+..
T Consensus        89 ~~~g~~~e--------A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          89 MALGKFRA--------ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHTTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999888        4458888888 788887777666554  33344455544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.63  E-value=6.4e-16  Score=108.51  Aligned_cols=118  Identities=17%  Similarity=0.247  Sum_probs=95.4

Q ss_pred             HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccccCc---------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039           9 YNKLK--ESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         9 ~~~~~--~~g~~~~~~g~~~~A~~~~~~al~~~~p~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      +.++.  ..|..++..|+|++|+..|++++++. |+.         ...+.+|.++|.+|..+|+|++|+..+++++.+.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~-~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-hhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44444  45899999999999999999999988 641         2346789999999999999999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          78 PD-----------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        78 p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      |.           ...+++++|.+|..+|++++|+..|++++++.|+..........+...
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~  146 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  146 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHH
Confidence            42           245789999999999999999999999999987665444433333333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.1e-16  Score=112.09  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      +..+...|..++..|+|++|+..|++++.++|.++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         127 IVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      .+++...+..        .|++++.
T Consensus        84 ~l~~~~~A~~--------~~~~al~  100 (201)
T d2c2la1          84 EMESYDEAIA--------NLQRAYS  100 (201)
T ss_dssp             HTTCHHHHHH--------HHHHHHH
T ss_pred             HCCCHHHHHH--------HHHHHHH
Confidence            9999888544        6665554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.63  E-value=5.7e-15  Score=97.88  Aligned_cols=90  Identities=11%  Similarity=-0.012  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy1039          47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA  126 (206)
Q Consensus        47 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  126 (206)
                      ...++.+|.+++..|++.+|+..|++++.++|+++.+|+.+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1039         127 IVTKRMQENE  136 (206)
Q Consensus       127 ~~~~~~~~~~  136 (206)
                      ..++..++..
T Consensus        96 ~~g~~~~A~~  105 (112)
T d1hxia_          96 NEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HCCCHHHHHH
Confidence            9999888444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5e-15  Score=115.69  Aligned_cols=166  Identities=7%  Similarity=-0.035  Sum_probs=130.7

Q ss_pred             cccchhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhccccCcHHHHHHH-HHHHHHHHHccCHHHHHHHHHHHhhhCC
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGD--YETALDFYTKALKVTAEESHERATCL-KNRAAVYLKQNQNDKVIEDCSKSLEIVP   78 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~~p~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~l~p   78 (206)
                      +..+|++...|+.+|..+...++  +++|+..+.++++.+ |.   +...+ ..+|.++...+.+++|+..++++++++|
T Consensus       100 l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~---~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1         100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-ch---hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            45688889999999988877664  889999999999998 76   45554 5678888888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHH------------------------------HHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q psy1039          79 DDPKALFRRCQAYEAIGKFEE------------------------------AYTDAKHIHRVEPTNKAIQPVLSRLFAIV  128 (206)
Q Consensus        79 ~~~~~~~~la~~~~~~g~~~~------------------------------A~~~~~~al~~~p~~~~~~~~l~~~~~~~  128 (206)
                      .+..+|+.+|.++..+|++++                              +...+.+++..+|.+......++.++...
T Consensus       176 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~  255 (334)
T d1dcea1         176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL  255 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence            999999999999888887643                              34444555556666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         129 TKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      ++...        +...+.++.. .|.+...+..+|.++...|++++|.+.+
T Consensus       256 ~~~~~--------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         256 QSELE--------SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HHHHH--------HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             hhHHH--------HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66555        4457777777 6888999999999999999999998888

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=93.58  Aligned_cols=85  Identities=20%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      ++..+.+|.++++.|+|.+|+.+|++|+++. |..    ...+.++.++|.++.++|++++|+..|+++++++|+++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            4567888888888888888888888888876 431    12466778888888888888888888888888888888888


Q ss_pred             HHHHHHHHHc
Q psy1039          85 FRRCQAYEAI   94 (206)
Q Consensus        85 ~~la~~~~~~   94 (206)
                      .+++.....+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8777655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=97.83  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+..+.++|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+|+|++|+..+++++.++|+++..+..++.++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039         126 AIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..++........++. +..+|++++.
T Consensus        83 ~~lg~~~~~~~~~~~-A~~~~~kal~  107 (128)
T d1elra_          83 ARIGNSYFKEEKYKD-AIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHTTCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHH-HHHHHHHHHh
Confidence            888777665553332 4456666665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=5.4e-14  Score=99.68  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=88.7

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHH
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK   82 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~   82 (206)
                      ..+|.....+.++|.++++.|+|++|+..|+++++++ |+   ++.+|+++|.+|..+|++++|+..|+++++++|++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            4578899999999999999999999999999999999 99   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAY  101 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~  101 (206)
                      ++..++.+...+....++.
T Consensus       147 ~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         147 IQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999988877766654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3e-14  Score=91.55  Aligned_cols=84  Identities=13%  Similarity=0.039  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ  118 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  118 (206)
                      ++.-++.+|..++..|+|.+|+.+|++|+++.|.+       ..++.++|.++..+|++++|+..|+++++++|+++.+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35668899999999999999999999999986643       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1039         119 PVLSRLFAIVT  129 (206)
Q Consensus       119 ~~l~~~~~~~~  129 (206)
                      .+++.+...+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99987766543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.6e-13  Score=95.52  Aligned_cols=120  Identities=12%  Similarity=0.129  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---------------PKALFRRCQAYEAIGKFEEAYTDAKHIHRV  110 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  110 (206)
                      .+..+...|..++..|+|++|+..|++++.+.|..               ..++.++|.||..+|+|++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            46677889999999999999999999999998754               356788999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccc
Q psy1039         111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM  173 (206)
Q Consensus       111 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (206)
                      +|+++.++..++.++..+++..+        +...|++++. .|.+......++.+........
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~--------A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFEL--------ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988        5559999988 7889999988888877666553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.3e-14  Score=115.09  Aligned_cols=122  Identities=11%  Similarity=0.032  Sum_probs=86.3

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP   81 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~   81 (206)
                      +..+|++...+..+|..+...|++++|+..+.+++..+ |     ..++.++|.++...|+|++|+.+|++|+.++|++.
T Consensus       113 ~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~-----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~  186 (497)
T d1ya0a1         113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-C-----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG  186 (497)
T ss_dssp             ------------------------------CCHHHHHH-H-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS
T ss_pred             HCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-H-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch
Confidence            45678889999999999999999999999999999887 5     56788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy1039          82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT  129 (206)
Q Consensus        82 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  129 (206)
                      .+|+++|.++...|++.+|+.+|.+++.++|.++.+..+++.++....
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999998876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=3.8e-13  Score=93.02  Aligned_cols=120  Identities=10%  Similarity=0.064  Sum_probs=96.3

Q ss_pred             HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy1039          56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI----------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF  125 (206)
Q Consensus        56 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  125 (206)
                      .+.+++.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.++..++.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456788899999999999999999999999999999865          4558999999999999999999999999999


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhcccchh
Q psy1039         126 AIVTKRMQ---ENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG  175 (206)
Q Consensus       126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a  175 (206)
                      ..++....   ........+..+|+++++ .|.....+..++.+.-..+.++++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88775311   111223347789999999 788888888777776554444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2e-12  Score=100.61  Aligned_cols=147  Identities=10%  Similarity=-0.009  Sum_probs=118.9

Q ss_pred             HcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHcc----------CHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy1039          21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN----------QNDKVIEDCSKSLEIVPDDPKALFRRCQA   90 (206)
Q Consensus        21 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~al~l~p~~~~~~~~la~~   90 (206)
                      ..+..++|+.++.++++.+ |+   +..+|..++.++...+          ++.+|+..|+++++.+|++..+|+.+|.+
T Consensus        41 ~~~~~~~al~~~~~~l~~~-P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~  116 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN-PD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHH
Confidence            3334589999999999999 98   7888877777765544          48899999999999999999999999999


Q ss_pred             HHHcCC--HHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhh
Q psy1039          91 YEAIGK--FEEAYTDAKHIHRVEPTNKAIQP-VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL  166 (206)
Q Consensus        91 ~~~~g~--~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (206)
                      +...++  +++|+..+++++..+|.+..++. ..+.++...+....        +..++++++. .|.+...+..++.++
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------Al~~~~~~i~~~p~~~~a~~~l~~~~  188 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE--------ELAFTDSLITRNFSNYSSWHYRSCLL  188 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH--------HHHHHHTTTTTTCCCHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH--------HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            888875  89999999999999999887754 45555555555444        5558888888 789999999999999


Q ss_pred             hHhcccchhhHHH
Q psy1039         167 VVLAREMSGAEML  179 (206)
Q Consensus       167 ~~~~~~~~a~~~~  179 (206)
                      ..+|++++|...+
T Consensus       189 ~~~~~~~~A~~~~  201 (334)
T d1dcea1         189 PQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHSCCCCSSSCC
T ss_pred             HHhcCHHHHHHHH
Confidence            9999987765544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=8.8e-13  Score=101.05  Aligned_cols=168  Identities=8%  Similarity=0.055  Sum_probs=127.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC---
Q psy1039           6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---   80 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---   80 (206)
                      +..++.+...|+.|...|+|++|+.+|.+++++..  ++++..+..+.++|.||..+|++++|+..|++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            34577899999999999999999999999999741  1223367889999999999999999999999999887655   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1039          81 ---PKALFRRCQAYEA-IGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF  150 (206)
Q Consensus        81 ---~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                         ..++..+|.++.. .|++++|+..|++++.+.+..      ..+...++.++...++..+        +..+|+++.
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~--------A~~~~~~~~  185 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE--------ASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH--------HHHHHHHHH
Confidence               5678889988865 699999999999999875532      2345667777777777776        444676666


Q ss_pred             C-CCCCh-------hhhHHHHhhhhHhcccchhhHHHHh
Q psy1039         151 D-TSAPM-------DKRVTAVNNLVVLAREMSGAEMLLK  181 (206)
Q Consensus       151 ~-~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~  181 (206)
                      . .+...       ......+.++...++++.|...+-+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            5 23222       2234566777777888777666544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=91.96  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=79.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhC
Q psy1039           1 MIDNNMNDYNKLKESGNSAFKQG---DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         1 al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~   77 (206)
                      +|..+|+++++++++|.++++.+   ++++|+..|++++..+ |. +....+++++|.+|..+|+|++|+.+|+++++++
T Consensus        25 aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          25 EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SK-EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CC-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            35678999999999999998755   4557999999999988 75 1135689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q psy1039          78 PDDPKALFRRCQAYEAI   94 (206)
Q Consensus        78 p~~~~~~~~la~~~~~~   94 (206)
                      |++..+...++.+...+
T Consensus       103 P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         103 PQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999998888776544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.42  E-value=1.6e-12  Score=91.90  Aligned_cols=98  Identities=17%  Similarity=0.191  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR   87 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l   87 (206)
                      ....+.++|.+++..|+|++|+..+++++.++ |+   +..+++++|.++..+|++++|+.+|.+++.++|++..+...+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45567789999999999999999999999999 99   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHH-HHHHHHHHHh
Q psy1039          88 CQAYEAIGKFEE-AYTDAKHIHR  109 (206)
Q Consensus        88 a~~~~~~g~~~~-A~~~~~~al~  109 (206)
                      +.+...++.+.+ ..+.|.+.++
T Consensus       139 ~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         139 FMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHh
Confidence            999888877654 3444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.41  E-value=3.8e-12  Score=88.60  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----------------PKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      .+..+...|..+++.|+|.+|+..|.+++.+.|..                ..++.++|.+|..+|++++|+..++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            45667889999999999999999999999876643                23678899999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHh
Q psy1039         110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL  169 (206)
Q Consensus       110 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (206)
                      ++|++..++..++.++..+++...        +...|++++. .|.+...+..+..+.-.+
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~--------A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEE--------AKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999988        5559999998 788888877776665443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=8e-12  Score=89.21  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=94.0

Q ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc-------------------HHHHHHHHHHHHHHHHccCHH
Q psy1039           4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------HERATCLKNRAAVYLKQNQND   64 (206)
Q Consensus         4 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~-------------------~~~~~~~~~la~~~~~~~~~~   64 (206)
                      .+...-+.+...|..+...|++++|+..|.+|+.+. +..                   .....++.+++.++...|+++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            355667889999999999999999999999999997 531                   334567899999999999999


Q ss_pred             HHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1039          65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI  107 (206)
Q Consensus        65 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  107 (206)
                      +|+.++++++.++|.+..+|..++.++...|++.+|+..|+++
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=8.7e-12  Score=95.38  Aligned_cols=138  Identities=12%  Similarity=0.012  Sum_probs=108.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC---cHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhhCCC-
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPD-   79 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~---~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~-   79 (206)
                      .+..+..+.+.|.+|...|++++|+.+|++++++. +.   ......++.++|.++.. .|++++|++.|++++.+.+. 
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh-hhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667899999999999999999999999999986 43   23346778889988865 69999999999999987443 


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          80 -----DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP-------VLSRLFAIVTKRMQENEQLQNKVHNMFK  147 (206)
Q Consensus        80 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (206)
                           ...++.++|.++..+|+|++|...|++++...|.++....       ..+.++...++...        +...+.
T Consensus       152 ~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--------A~~~~~  223 (290)
T d1qqea_         152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA--------AARTLQ  223 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH--------HHHHHH
T ss_pred             CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHH--------HHHHHH
Confidence                 2456889999999999999999999999999988764332       33333333344444        556888


Q ss_pred             HhcC
Q psy1039         148 YVFD  151 (206)
Q Consensus       148 ~~~~  151 (206)
                      ++..
T Consensus       224 ~~~~  227 (290)
T d1qqea_         224 EGQS  227 (290)
T ss_dssp             GGGC
T ss_pred             HHHH
Confidence            8877

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.2e-10  Score=89.58  Aligned_cols=164  Identities=7%  Similarity=-0.077  Sum_probs=137.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHH
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL   84 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~   84 (206)
                      .|.+...|...+......|+++.|...|++++... |..  ...+|...+......|.++.|...|.+++...|.+...+
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-~~~--~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-cCC--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence            67788889999999999999999999999999998 751  345788899999999999999999999999999999999


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC----hhh
Q psy1039          85 FRRCQAYE-AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAP----MDK  158 (206)
Q Consensus        85 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~  158 (206)
                      ...|.... ..|+.+.|...|++++...|+++.++..........++..+        +..+|++++. .+.+    ..+
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~--------aR~~fe~ai~~~~~~~~~~~~i  243 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN--------TRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHSSSSCGGGCHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH--------HHHHHHHHHHhCCCChHHHHHH
Confidence            99987754 46899999999999999999999999999888887776665        6668888876 3332    346


Q ss_pred             hHHHHhhhhHhcccchhhHHH
Q psy1039         159 RVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       159 ~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +......-...|+.+.+.+.+
T Consensus       244 w~~~~~fE~~~G~~~~~~~~~  264 (308)
T d2onda1         244 WARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            666777667778777766655

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=4.8e-11  Score=91.89  Aligned_cols=166  Identities=10%  Similarity=0.005  Sum_probs=135.4

Q ss_pred             cccchhhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhc-cccCcHHHHHHHHHHHHHHHHccCHHHH
Q psy1039           2 IDNNMNDYNKLKESGNSAFKQ--------------GDYETALDFYTKALKV-TAEESHERATCLKNRAAVYLKQNQNDKV   66 (206)
Q Consensus         2 l~~~p~~~~~~~~~g~~~~~~--------------g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~la~~~~~~~~~~~A   66 (206)
                      |...|.++..|...+..+...              +..++|...|+++++. . |.   +..+|...+......|+++.|
T Consensus        43 l~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~-p~---~~~l~~~ya~~~~~~~~~~~a  118 (308)
T d2onda1          43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KK---NMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHhcccHHHH
Confidence            345677778888777665433              3458899999999985 5 76   678899999999999999999


Q ss_pred             HHHHHHHhhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy1039          67 IEDCSKSLEIVPDDP-KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV-TKRMQENEQLQNKVHN  144 (206)
Q Consensus        67 ~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~  144 (206)
                      ...|++++...|.+. .+|...+......|+++.|...|++++...|.+.......+.+.... ++...        +..
T Consensus       119 ~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~--------a~~  190 (308)
T d2onda1         119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV--------AFK  190 (308)
T ss_dssp             HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH--------HHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHH--------HHH
Confidence            999999999999764 57899999999999999999999999999999998887776554322 22333        555


Q ss_pred             HHHHhcC-CCCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       145 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      +|++++. .|.+...+...+..+...|+++.|...+
T Consensus       191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~f  226 (308)
T d2onda1         191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  226 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHH
Confidence            8888888 6889999999999999999988776655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.8e-12  Score=104.07  Aligned_cols=143  Identities=11%  Similarity=0.000  Sum_probs=93.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g   95 (206)
                      +......|.|+.|+..+.+++.++ |+   ....+.++|..+...|++.+|+..+.+++.++|.  .+++++|.++...|
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVD-LP---CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC-hh---hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcc
Confidence            444455677888888888888888 87   8889999999999999999999999999988774  68999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChhhhHHHHhhhhHhccc
Q psy1039          96 KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE  172 (206)
Q Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (206)
                      ++++|..+|++++.++|++...+..+|.++...++..+        +..+|.+++. .++-...+..++..+....+.
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~--------A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT--------TIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH--------HHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHH--------HHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999888888        5558888888 667777777777776655543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.8e-10  Score=88.24  Aligned_cols=168  Identities=8%  Similarity=0.030  Sum_probs=122.4

Q ss_pred             ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC
Q psy1039           3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD   80 (206)
Q Consensus         3 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~   80 (206)
                      ..++..++....+|.+++..|++++|+.+|+++++.. |+.  .....++..+|.++...|++++|+..|++++++.|..
T Consensus         6 ~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            3456678888999999999999999999999999998 752  2235678899999999999999999999999876543


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1039          81 ------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--------KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF  146 (206)
Q Consensus        81 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (206)
                            ..++..++.++...|++..|...+.+++.+.+..        ......++.++...++......        .+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~--------~~  156 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA--------SA  156 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH--------HH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH--------HH
Confidence                  4567889999999999999999999998864322        1244455666666555555333        44


Q ss_pred             HHhcC-C-----CCChhhhHHHHhhhhHhcccchhhHHH
Q psy1039         147 KYVFD-T-----SAPMDKRVTAVNNLVVLAREMSGAEML  179 (206)
Q Consensus       147 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~  179 (206)
                      .++.. .     ..........+..+...+.+..+...+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  195 (366)
T d1hz4a_         157 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL  195 (366)
T ss_dssp             HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            33333 1     122334455566666666666555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.12  E-value=2.8e-10  Score=78.99  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q psy1039          50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP------------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---  114 (206)
Q Consensus        50 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  114 (206)
                      +...|..++..|+|++|+..|+++++++|..+            .+|.++|.+|..+|+|++|+..+++++.+.|..   
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            34458888999999999999999999988653            578899999999999999999999999875532   


Q ss_pred             --------hhHHHHHHHHHHHHHHHHHHHH
Q psy1039         115 --------KAIQPVLSRLFAIVTKRMQENE  136 (206)
Q Consensus       115 --------~~~~~~l~~~~~~~~~~~~~~~  136 (206)
                              ..++..++.++..+++.+++..
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence                    2356778888888888887554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.09  E-value=3.1e-10  Score=85.66  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             HHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy1039          58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI  127 (206)
Q Consensus        58 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  127 (206)
                      +..|++++|+..|+++++.+|++..++..+|.++...|++++|.+.|+++++++|++..+...++.+...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            3445555555555555555555555555555555555555555555555555555555555555444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.05  E-value=1e-10  Score=88.31  Aligned_cols=124  Identities=14%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcC
Q psy1039          16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG   95 (206)
Q Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g   95 (206)
                      +..++..|++++|+..|+++++.+ |+   +..++..+|.++...|++++|+..|+++++++|++..++..++.++...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~-P~---d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKAS-PK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTC-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            456788999999999999999999 99   89999999999999999999999999999999999999999999998888


Q ss_pred             CHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          96 KFEEAYTDAKHIHRV-EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        96 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+++...+.+.... +|.........+.+....++..+        +...+.++.+
T Consensus        79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~--------A~~~~~~a~e  127 (264)
T d1zbpa1          79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ--------VSELALQIEE  127 (264)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHH
T ss_pred             ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHh
Confidence            887776555443333 34333444444455555555555        3345666555

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=5.1e-08  Score=74.08  Aligned_cols=174  Identities=11%  Similarity=0.027  Sum_probs=132.5

Q ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCC---
Q psy1039           5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---   79 (206)
Q Consensus         5 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---   79 (206)
                      .+..+.....+|..++..|+++.|...+.+++... +.  .......+...+..+...+.+.++...+.++..+.+.   
T Consensus       129 ~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  207 (366)
T d1hz4a_         129 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY  207 (366)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            34456678889999999999999999999999976 53  2234667888999999999999999999998876443   


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          80 ----DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA----IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        80 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                          ...++..+|.++...|++++|...+++++...|.+..    ....++.++...++...+....+ .+....+..-.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~  286 (366)
T d1hz4a_         208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE-ELNENARSLRL  286 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTC
T ss_pred             cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHhhccc
Confidence                2346778899999999999999999999999887643    34456777777777666444221 22222232223


Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHHH
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEMLL  180 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  180 (206)
                      .+.........+.++...|++++|...+-
T Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45667788889999999999999988873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=3.2e-08  Score=65.11  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy1039          46 RATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDD-PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL  121 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  121 (206)
                      +....|+.|-|+.+..   +..+++..++.+++.+|.+ .+++|.+|.+|+++|+|++|..+++++++++|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3678899999998764   5679999999999999976 58999999999999999999999999999999999998877


Q ss_pred             HHHHHHHH
Q psy1039         122 SRLFAIVT  129 (206)
Q Consensus       122 ~~~~~~~~  129 (206)
                      ..+...+.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.85  E-value=1.6e-07  Score=69.77  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCCHHH
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKA   83 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~~   83 (206)
                      ||.+++.+|..++..|++++|+++|+++.+.+      +..+++++|.+|..    ..++..|..++..+....  ++.+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a   72 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG   72 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccch
Confidence            57899999999999999999999999999876      57889999999987    678999999999977544  7788


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy1039          84 LFRRCQAYEA----IGKFEEAYTDAKHIHRVEP  112 (206)
Q Consensus        84 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p  112 (206)
                      ...+|.++..    ..+.+.|...++++....+
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            8889888775    4678889999988877543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1.3e-07  Score=66.83  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----------------------PKALFRRCQAYEAIGKFEEAYTD  103 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~  103 (206)
                      ....+...|......|++++|++.|.+|+.+.+..                      ..++..+|.++..+|++++|+..
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            56778899999999999999999999999997643                      25688999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1039         104 AKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL  138 (206)
Q Consensus       104 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  138 (206)
                      +++++.++|.+..++..++.++...++..++...+
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y  124 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAY  124 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999998866533

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.4e-07  Score=61.95  Aligned_cols=79  Identities=13%  Similarity=0.044  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHH
Q psy1039           9 YNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF   85 (206)
Q Consensus         9 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~   85 (206)
                      .+..|+.|..+.+..+   .++|+.+++.+++.+ |..  .-.+++++|..|+++|+|++|..+++++++++|+|..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~--~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chh--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            6788999999997655   468999999999988 751  4579999999999999999999999999999999988876


Q ss_pred             HHHHH
Q psy1039          86 RRCQA   90 (206)
Q Consensus        86 ~la~~   90 (206)
                      .+-.+
T Consensus       112 L~~~I  116 (124)
T d2pqrb1         112 LKSMV  116 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.27  E-value=5.1e-06  Score=61.33  Aligned_cols=98  Identities=17%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhC
Q psy1039           6 MNDYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIV   77 (206)
Q Consensus         6 p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~   77 (206)
                      +.+...++.+|..+..    ..+...+..+++.+.+..      ++.+++++|.+|..    ..++++|+.+|+++.+..
T Consensus       139 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         139 LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccchhhhhhhhhccCCCcccccccchhhhhcccccc------ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            4556677788888875    556777778888877754      57778888888876    567888888888887764


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy1039          78 PDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVE  111 (206)
Q Consensus        78 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  111 (206)
                        ++.+++++|.+|..    ..++.+|.+.|+++....
T Consensus       213 --~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         213 --NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             --CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence              67888888888875    347888888888887764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=7.6e-06  Score=54.37  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH----c
Q psy1039          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----I   94 (206)
Q Consensus        23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~   94 (206)
                      .++++|+.+|+++.+.+      ++.+.+.+|..|..    ..++.+|+.+|+++.+.  .++.+.+.+|.+|..    .
T Consensus        37 ~~~~~a~~~~~~aa~~g------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          37 INKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             cCHHHHHHHHhhhhccc------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccC
Confidence            45566666666666554      35555666666554    33466666666666543  345566666666655    3


Q ss_pred             CCHHHHHHHHHHHHhc
Q psy1039          95 GKFEEAYTDAKHIHRV  110 (206)
Q Consensus        95 g~~~~A~~~~~~al~~  110 (206)
                      .++.+|...|+++.+.
T Consensus       109 ~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         109 KNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHC
Confidence            4566666666665543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.20  E-value=6.5e-06  Score=54.69  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH----cCCHH
Q psy1039          23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA----IGKFE   98 (206)
Q Consensus        23 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~----~g~~~   98 (206)
                      .|+++|+.+|+++.+.+      ++...++++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++.
T Consensus         7 kd~~~A~~~~~kaa~~g------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHHCC------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhH
Confidence            47899999999999987      3445566664  3457899999999998875  589999999999987    56899


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Q psy1039          99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIV----TKRMQENEQLQNKVHNMFKYVFD  151 (206)
Q Consensus        99 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      +|...|+++.+.  .++.+...++.++..-    ++..+        +..+|+++.+
T Consensus        77 ~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~--------A~~~~~~Aa~  123 (133)
T d1klxa_          77 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ--------AVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH--------HHHHHHHHHH
T ss_pred             HHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH--------HHHHHHHHHH
Confidence            999999999875  6788888888887541    22233        4557777765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.13  E-value=0.78  Score=34.25  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC------
Q psy1039          81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TS------  153 (206)
Q Consensus        81 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------  153 (206)
                      ++-....-..+...|.+++.+..++.++..++.+...+..+..++.+.....         ...+++.... .+      
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~k---------l~e~l~~~s~~y~~~k~~~  169 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK---------MREHLELFWSRVNIPKVLR  169 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH---------HHHHHHHHSTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHH---------HHHHHHhccccCCHHHHHH
Confidence            3334445677788899999999999999999999999888888876543322         2334433322 11      


Q ss_pred             --CChhhhHHHHhhhhHhcccchhhHHHHhcch
Q psy1039         154 --APMDKRVTAVNNLVVLAREMSGAEMLLKSGV  184 (206)
Q Consensus       154 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  184 (206)
                        .....+....-.+...|.++.|+..++..|.
T Consensus       170 ~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~  202 (336)
T d1b89a_         170 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  202 (336)
T ss_dssp             HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HHHHcCChHHHHHHHHhcCCHHHHHHHHHHcch
Confidence              2233456677777788888999888887764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.16  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039           7 NDYNKLKESGNSAFKQGDYETALDFYTKALK   37 (206)
Q Consensus         7 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~   37 (206)
                      |-+..+...+.-+++.|.|++||++++++..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455666667777777777777776665544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.74  Score=35.53  Aligned_cols=85  Identities=6%  Similarity=-0.016  Sum_probs=54.6

Q ss_pred             HHcCCHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1039          20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE   99 (206)
Q Consensus        20 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~   99 (206)
                      +..+..+.|........... .+   .....-..+. ....+++..+...++..-.-........|++|.++..+|+-++
T Consensus       263 ~~~~~~~~a~~~~~~~~~~~-~~---~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~  337 (450)
T d1qsaa1         263 MGNDVTDEQAKWRDDAIMRS-QS---TSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAE  337 (450)
T ss_dssp             CSTTCCHHHHHHHHHHHHTC-CC---HHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCchHHHHHHHHhhcccc-cc---hHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhh
Confidence            34455566666665555443 33   2222222333 4456788888888876543333457788999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1039         100 AYTDAKHIHR  109 (206)
Q Consensus       100 A~~~~~~al~  109 (206)
                      |...|..+..
T Consensus       338 A~~~~~~~a~  347 (450)
T d1qsaa1         338 AKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9988887654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.13  E-value=0.94  Score=26.94  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1039           8 DYNKLKESGNSAFKQGDYETALDFYTKALKV   38 (206)
Q Consensus         8 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   38 (206)
                      .+..+...|..+-..|+|++|+.+|..+++.
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666553

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.99  E-value=1  Score=25.96  Aligned_cols=28  Identities=21%  Similarity=0.154  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy1039          46 RATCLKNRAAVYLKQNQNDKVIEDCSKS   73 (206)
Q Consensus        46 ~~~~~~~la~~~~~~~~~~~A~~~~~~a   73 (206)
                      .+..+..+|..+.+.|+|++||++.+++
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455666788888888888888877664

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.24  E-value=5.4  Score=27.58  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             CCCChhhhHHHHhhhhHhcccchhhHHHHhcch--H-HHHHHHhcccCChhhhhhh
Q psy1039         152 TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGV--A-KQINTLLKCETNEEIYLAL  204 (206)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  204 (206)
                      +.............+..+|+.+.|..-+++.-.  . ..+.++-. +.++..|+..
T Consensus        81 ~~~~~~~~~~~v~~L~rLg~~~~A~~lfL~~rs~~l~~~i~~~~~-~~~~~~Yi~~  135 (229)
T d2d2sa1          81 SSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGS-VDNPTNYLTQ  135 (229)
T ss_dssp             TCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC---CCSHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhcCc-CCCHHHHHHH
Confidence            345566667788888899999999999997776  3 34444444 6677766653

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.99  E-value=1.5  Score=26.20  Aligned_cols=28  Identities=36%  Similarity=0.620  Sum_probs=25.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccC
Q psy1039          14 ESGNSAFKQGDYETALDFYTKALKVTAEE   42 (206)
Q Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~p~   42 (206)
                      .+|..++..|++++|+.+|.+|+.++ |+
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc-~q   52 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNAIAVC-GQ   52 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHH-SC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHc-CC
Confidence            57888999999999999999999998 87

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.32  E-value=4.7  Score=25.57  Aligned_cols=60  Identities=20%  Similarity=0.132  Sum_probs=38.9

Q ss_pred             HHHHHH-HHHHccCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1039          50 LKNRAA-VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR  109 (206)
Q Consensus        50 ~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  109 (206)
                      |+.+|. .+..+|+-++-...++..++...-++..+..+|.+|.+.|.-.++-+.+.+|=+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            445554 334556666656666666776666777788888888888888888777766644

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.64  E-value=3.5  Score=32.39  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q psy1039          83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR  131 (206)
Q Consensus        83 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  131 (206)
                      .....|...+..|+|.-|.+....++..+|+|..+...++.++..++..
T Consensus       432 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~  480 (505)
T d2cfua2         432 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  480 (505)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            3344444445556666666666666666666666665555555555543