Psyllid ID: psy10487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610
Protein Sequence
MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDATSTEDIPSPPPPPTLCTPLGVEYVSL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccEEcccccccEEEccccccccccccccccccEEEccccccccccHHcccccccccccEEEEccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccEEEcccccEEEEEEEEEccccEEEEEEccEEcccccccEEEEccccEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEccccccccccccccEEEcccccccEEEcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccccccEEEEEccccEEEEEccccccccccccccccEEEEccccccccccHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccEEccHHHHHHHHHHHHcccEEcccEEEEcHHHcccEEEEccHHHccccccEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEEccEEEEEcccEEEEEcccHHHcEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccEEEEEEccccccccEEEEEEcccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MLAVVVILLAACLgttgspdwtdcpdtcrckwtlgkksalckdanftalpstldsdiqvldlnnnkiSYLTKEAFKSIGLLNLQRIylknsgirevhrDTFKYLTILVEVDLSDNQIAWLhqdtflgndrlkvlylngnpitelragqfpklpylktielqhCQIHSVHKDALIHLTALESLNLNgnrlkhlsesvffptpnlktlsldgnpwccdchlrSFRNWLLKSKlyshplsctepgmlqtkhwddvkaqefacppnvtikeSMVIREAGGNVtmscyvygdpeptILWLLNgqvlhnssfdlleeeegdaLFEKSVSITlfnvtdldageytcyaenirgnasgeisldlpeinlattlsktdSWYMLVLGISVCVVSVIVSIGMSFCVCrahehknkrrkrkgkmkqsvsfndqekklLDVSItttdrhtgscealgsqpdmELIEQSlameqppvhitieshavdpqvsvfppppefssnhlptstygnIFISVsvsqeppgsdppkypdlidmphrsvsvgtgpgtnpayfatlprrprskviepsslvrvgpkydnmgprvtaggasilslpdatstedipsppppptlctplgveyvsl
Flexible Loop (DISEMBL)
MLAVVVILLAAClgttgspdwtdcpDTCRCKWTLGKKSALCKDANFTALpstldsdiqvLDLNNNKISYLTKEAFKSIGLLNLQRIYLknsgirevHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCrahehknkrrkrkgkmkqsvsfndqekklldVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAyfatlprrprskviepsslvrvgpkydnmgpRVTAGGASILSLPDATStedipsppppptlctplgveyvsl
Low Complexity Region (SEG)
MlavvvillaaCLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGisvcvvsvivsiGMSFCVCRAHEHknkrrkrkgkmkQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAvdpqvsvfppppefssNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDATSTEDIpsppppptlctplGVEYVSL
Disordered region (IsUnstruct)
*LAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN****************KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA***********************************************************************************************TYGNIFISV************************************************************************************************************
Disordered Region (DISOPRED)
MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP****IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH***************FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEIN*******T*SWYMLVLGISVCVVSVIVSIGMSFCVC*************************************************************************************************************************************************************************NMGPRVTAGGASI*******************************L
Disordered Region (DISEMBL)
MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH******************FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSV********PPKYPDLIDMPHRSVSVGTGPGTNPAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPD**********PPPPTLCTPLGVEYVSL
Disordered Region (DISPRO)
MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRR*RKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAYF*TLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDA*STEDIPSPPPPPTLCTPLGVEYVSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDATSTEDIPSPPPPPTLCTPLGVEYVSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	610	2.2.26 [Sep-21-2011]
Q8BHA1	521	Leucine-rich repeat-conta	yes	N/A	0.526	0.616	0.282	2e-27
O94898	1065	Leucine-rich repeats and	yes	N/A	0.506	0.290	0.283	1e-26
Q50LG9	513	Leucine-rich repeat-conta	no	N/A	0.519	0.617	0.291	2e-26
Q9VZZ4	1527	Peroxidasin OS=Drosophila	no	N/A	0.467	0.186	0.302	5e-26
Q52KR2	1054	Leucine-rich repeats and	no	N/A	0.506	0.293	0.280	1e-25
P0C7J6	766	Leucine-rich repeat and f	no	N/A	0.516	0.411	0.253	8e-24
Q2WF71	766	Leucine-rich repeat and f	no	N/A	0.516	0.411	0.253	8e-24
Q9P244	771	Leucine-rich repeat and f	no	N/A	0.518	0.409	0.253	1e-23
Q6P1C6	1117	Leucine-rich repeats and	no	N/A	0.508	0.277	0.257	1e-22
D4A1J9	719	Leucine-rich repeat and f	no	N/A	0.506	0.429	0.258	5e-22

>sp|Q8BHA1|LRC24_MOUSE Leucine-rich repeat-containing protein 24 OS=Mus musculus GN=Lrrc24 PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 157/340 (46%), Gaps = 19/340 (5%)

Query: 22  TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
           T CP  CRC       +  C       +P  +    Q L L +N I++L + +     L 
Sbjct: 29  TGCPAACRCY----SATVECGALRLRVVPPGIPPGTQTLFLQDNSIAHLEQGSLAP--LA 82

Query: 82  NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
            L+ +YL N+ +R +    F+    L+E+ L+ N++  L    F+G  +L+VLYL GN +
Sbjct: 83  ALRHLYLHNNTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFVGLVQLRVLYLAGNQL 142

Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
            +L    F  LP L+ + LQ   I  +   AL  L++L  L+L+ N+L  +S+    P  
Sbjct: 143 AKLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISKEALQPLS 202

Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWLLKS--KLYS---HPLSCTEPGMLQTKHWDDVKAQE 256
           +L+ L L  NPW CDC L    +W+ +   +L S     ++C EP  L  +   +V    
Sbjct: 203 SLQVLRLTENPWRCDCALHWLGSWIKEGGRRLLSSRDKKITCAEPPRLALQSLLEVSGGS 262

Query: 257 FAC-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-----LNGQVLHNSSFDLLE 310
             C PP+V ++        G ++ ++C   G P+P ++W       +G+    +  +   
Sbjct: 263 LICIPPSVNVEPPEFTANLGEDLQVACQASGYPQPLVVWRKVPQPRDGKPQAQAQLEGGA 322

Query: 311 EEEGDALFEKSVSITLF--NVTDLDAGEYTCYAENIRGNA 348
              G      + S  LF  N+T   AG+Y C A N  G A
Sbjct: 323 PGLGGHGTRDTGSGMLFLTNITLAHAGKYECEAANAGGKA 362

Mus musculus (taxid: 10090)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 167/356 (46%), Gaps = 47/356 (13%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
           KD  F  L     ++++ L+L +N ++ + K      GL  LQ++Y+  + I  +  D +
Sbjct: 255 KDGAFFGL-----NNMEELELEHNNLTRVNKGWL--YGLRMLQQLYVSQNAIERISPDAW 307

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE-- 159
           ++   L E+DLS NQ+  L +  F+G   L+ L L  N +T +  G F  L  L+T++  
Sbjct: 308 EFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLR 367

Query: 160 -------------------------LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
                                    LQ  QI S+ K A I L +LE L+LN N +  + E
Sbjct: 368 NNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNNAIMSIQE 427

Query: 195 SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL-YSHPLSCTEPGMLQTKHWDDVK 253
           + F  T +LK L L+ +   CDCHL+    WL+ +   +S  +SC  P  L  +   +V 
Sbjct: 428 NAFSQT-HLKELILNTSSLLCDCHLKWLLQWLVDNNFQHSVNVSCAHPEWLAGQSILNVD 486

Query: 254 AQEFAC----PPNVTIKESMVIREAGGNVTMSCYVY--GDPEPTILWLLNGQVLHN---S 304
            ++F C     P +      +I   G NVT++C      D   + +W  + ++L++    
Sbjct: 487 LKDFVCDDFLKPQIRTHPETIIALRGMNVTLTCTAVSSSDSPMSTVWRKDSEILYDVDTE 546

Query: 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLDLPEI 359
           +F    ++ G+AL   S+ + LFNV   D G+Y C   N  G N S +  L + E+
Sbjct: 547 NFVRYWQQAGEALEYTSI-LHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEM 601

Homo sapiens (taxid: 9606)

>sp|Q50LG9|LRC24_HUMAN Leucine-rich repeat-containing protein 24 OS=Homo sapiens GN=LRRC24 PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 149/340 (43%), Gaps = 23/340 (6%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  CRC       +  C       +P  +    Q L L +N I+ L   A     L  L
Sbjct: 23  CPAACRCY----SATVECGALRLRVVPLGIPPGTQTLFLQDNNIARLEPGALAP--LAAL 76

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
           +R+YL N+ +R +    F+    L+E+ L+ N++  L    F+G  +L+VLYL GN +  
Sbjct: 77  RRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQLRVLYLAGNQLAR 136

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L    F  LP L+ + LQ   I  +   AL  L++L  L+L+ N+L  +S     P  +L
Sbjct: 137 LLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISREALQPLASL 196

Query: 204 KTLSLDGNPWCCDCHLRSFRNW-------LLKSKLYSHPLSCTEPGMLQTKHWDDVKAQE 256
           + L L  NPW CDC L     W       LL S+     + C EP  L  +   DV    
Sbjct: 197 QVLRLTENPWRCDCALHWLGAWIKEGGQRLLTSR--DRKIMCAEPPRLALQSLLDVSHSS 254

Query: 257 FAC-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-----LNGQVLHNSSFDLLE 310
             C PP+V ++   +    G ++ ++C   G P+P + W        G+    +  +   
Sbjct: 255 LICIPPSVHVQPLELTANLGEDLRVACQASGYPQPLVTWRKVPQPREGRPRAQAQLEGGL 314

Query: 311 EEEGDALFEKSVSITLF--NVTDLDAGEYTCYAENIRGNA 348
              G      + S  LF  N+T   AG+Y C A N  G A
Sbjct: 315 LGLGGHSASDTGSGMLFLSNITLAHAGKYECEASNAGGAA 354

Homo sapiens (taxid: 9606)

>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn PE=1 SV=1

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 140/327 (42%), Gaps = 42/327 (12%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C     +++  C  A  +A+P  L  D Q LDL  N I  L   AF   GL  L
Sbjct: 26  CPAGCTCL----ERTVRCIRAKLSAVPK-LPQDTQTLDLRFNHIEELPANAFS--GLAQL 78

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             ++L                        +DN++A+L      G   L+ +YLN N ++ 
Sbjct: 79  TTLFL------------------------NDNELAYLQDGALNGLTALRFVYLNNNRLSR 114

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L A  F ++P L+ I L++  I  +      +L  L  L +  N+L  L    F    NL
Sbjct: 115 LPATIFQRMPRLEAIFLENNDIWQLPAGLFDNLPRLNRLIMYNNKLTQLPVDGFNRLNNL 174

Query: 204 KTLSLDGNPWCCDCHLRS-FRNWLL--KSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP 260
           K L LDGN   C+C + S +R W L  + +L S  L+C  P MLQ + +  +    F C 
Sbjct: 175 KRLRLDGNAIDCNCGVYSLWRRWHLDVQRQLVSISLTCAAPQMLQNQGFSSLGEHHFKCA 234

Query: 261 -PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P   +        AG  V +SC V G P P I W+ N Q       +L  EE+  A   
Sbjct: 235 KPQFLVAPQDAQVAAGEQVELSCEVTGLPRPQITWMHNTQ-------ELGLEEQAQAEIL 287

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRG 346
            S S+ + +    D G Y C A N  G
Sbjct: 288 PSGSLLIRSADTSDMGIYQCIARNEMG 314

Plays a role in extracellular matrix consolidation, phagocytosis and defense.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q52KR2|LRIG2_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Mus musculus GN=Lrig2 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 168/356 (47%), Gaps = 47/356 (13%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
           KD  F  L     ++++ L+L +N ++ + K      GL  LQ++Y+  + I ++  D +
Sbjct: 254 KDGAFFGL-----NNMEELELEHNNLTGVNKGWL--YGLRMLQQLYMSQNAIEKISPDAW 306

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE-- 159
           ++   L E+DLS NQ+  L +  F+G   L+ L L  N +T +  G F  L  L+T++  
Sbjct: 307 EFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLR 366

Query: 160 -------------------------LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
                                    LQ  +I SV + A I L +LE L+LN N +  + E
Sbjct: 367 NNDISWAIEDASEAFSGLKSLTKLILQGNRIKSVTQKAFIGLESLEYLDLNNNAIMSIQE 426

Query: 195 SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL-YSHPLSCTEPGMLQTKHWDDVK 253
           + F  T +LK L L+ +   CDCHL+    WL+ +   +S  +SC  P  L  +   +V 
Sbjct: 427 NAFSQT-HLKGLVLNTSSLLCDCHLKWLLQWLVDNNFHHSVNVSCAHPEWLAGQSILNVD 485

Query: 254 AQEFAC----PPNVTIKESMVIREAGGNVTMSCYVY--GDPEPTILWLLNGQVLHN---S 304
            ++F C     P +       I   G NVT++C      D   + +W  + ++L++    
Sbjct: 486 LKDFVCDDFLKPQIRTHPESTIALRGVNVTLTCTAVSSSDSPMSTIWRKDSEILYDVDIE 545

Query: 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLDLPEI 359
           +F    +++G+AL   SV + LF+V   D G+Y C   N  G N S +  L + E+
Sbjct: 546 NFVRYRQQDGEALEYTSV-LRLFSVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEM 600

Mus musculus (taxid: 10090)

>sp|P0C7J6|LRFN1_RAT Leucine-rich repeat and fibronectin type III domain-containing protein 1 OS=Rattus norvegicus GN=Lrfn1 PE=1 SV=1

 Score =  112 bits (280), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 155/382 (40%), Gaps = 67/382 (17%)

Query: 17  GSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFK 76
           G+     CP  C C+      + LC       +P  +D  +  L L +N I+ + +  F 
Sbjct: 27  GASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFA 86

Query: 77  SIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136
           +  + +L  + L  + I +V    F  L  L  + L  N++A +  D   G   L+ L L
Sbjct: 87  N--MTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLIL 144

Query: 137 NGNPITELRAGQF-----------------PKLPY--------LKTIELQHCQIHSVHKD 171
             N I ++ +  F                   LP+        L T+ L H  I  + + 
Sbjct: 145 GNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEG 204

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFF----------PTPNLKTLSLDGNPWCCDCHLRS 221
             + L  L  L++  NRL  L     F          PTP   T+S  GNP  C+C L  
Sbjct: 205 TFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTP--LTVSFGGNPLHCNCELL- 261

Query: 222 FRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGN---- 277
              WL +        +C  P  L  +++  +  +EF C P       ++ R+AGG     
Sbjct: 262 ---WLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEP------PLITRQAGGRALVV 312

Query: 278 ----VTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
               V++ C   GDPEP + W+  +G++L NSS   +    GD   +  V+IT       
Sbjct: 313 EGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRV---RGDGTLD--VTITTLR---- 363

Query: 333 DAGEYTCYAENIRGNASGEISL 354
           D+G +TC A N  G A+  + +
Sbjct: 364 DSGTFTCIASNAAGEATAPVEV 385

Promotes neurite outgrowth in hippocampal neurons (By similarity). Involved in the regulation of the differentiation and maintenance of excitatory synapses. Induces the clustering of excitatory postsynaptic proteins, including DLG4, DLGAP1, GRIA1 and GRIN1.

Rattus norvegicus (taxid: 10116)

>sp|Q2WF71|LRFN1_MOUSE Leucine-rich repeat and fibronectin type III domain-containing protein 1 OS=Mus musculus GN=Lrfn1 PE=1 SV=1

 Score =  112 bits (280), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 155/382 (40%), Gaps = 67/382 (17%)

Query: 17  GSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFK 76
           G+     CP  C C+      + LC       +P  +D  +  L L +N I+ + +  F 
Sbjct: 27  GASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFA 86

Query: 77  SIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136
           +  + +L  + L  + I +V    F  L  L  + L  N++A +  D   G   L+ L L
Sbjct: 87  N--MTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLIL 144

Query: 137 NGNPITELRAGQF-----------------PKLPY--------LKTIELQHCQIHSVHKD 171
             N I ++ +  F                   LP+        L T+ L H  I  + + 
Sbjct: 145 GNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEG 204

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFF----------PTPNLKTLSLDGNPWCCDCHLRS 221
             + L  L  L++  NRL  L     F          PTP   T+S  GNP  C+C L  
Sbjct: 205 TFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTP--LTVSFGGNPLHCNCELL- 261

Query: 222 FRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGN---- 277
              WL +        +C  P  L  +++  +  +EF C P       ++ R+AGG     
Sbjct: 262 ---WLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEP------PLITRQAGGRALVV 312

Query: 278 ----VTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
               V++ C   GDPEP + W+  +G++L NSS   +    GD   +  V+IT       
Sbjct: 313 EGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRV---RGDGTLD--VTITTLR---- 363

Query: 333 DAGEYTCYAENIRGNASGEISL 354
           D+G +TC A N  G A+  + +
Sbjct: 364 DSGTFTCIASNAAGEATAPVEV 385

Promotes neurite outgrowth in hippocampal neurons. Involved in the regulation and maintenance of excitatory synapses. Induces the clustering of excitatory postsynaptic proteins, including DLG4, DLGAP1, GRIA1 and GRIN1.

Mus musculus (taxid: 10090)

>sp|Q9P244|LRFN1_HUMAN Leucine-rich repeat and fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=LRFN1 PE=1 SV=2

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 154/383 (40%), Gaps = 67/383 (17%)

Query: 16  TGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAF 75
            G+     CP  C C+      + LC       +P  +D  +  L L +N I+ + +  F
Sbjct: 26  AGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDF 85

Query: 76  KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY 135
            +  + +L  + L  + I +V    F  L  L  + L  N++A +  D   G   L+ L 
Sbjct: 86  AN--MTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLI 143

Query: 136 LNGNPITELRAGQF-----------------PKLPY--------LKTIELQHCQIHSVHK 170
           L  N I  + +  F                   LP+        L T+ L H  I  + +
Sbjct: 144 LGNNQIRRVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAE 203

Query: 171 DALIHLTALESLNLNGNRLKHLSESVFF----------PTPNLKTLSLDGNPWCCDCHLR 220
              + L  L  L++  NRL  L     F          PTP   T+S  GNP  C+C L 
Sbjct: 204 GTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGTGPKPPTP--LTVSFGGNPLHCNCELL 261

Query: 221 SFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGN--- 277
               WL +        +C  P  L  +++  +  +EF C P       ++ R+AGG    
Sbjct: 262 ----WLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEP------PLITRQAGGRALV 311

Query: 278 -----VTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
                V++ C   GDPEP + W+  +G++L NSS   +    GD   +  V+IT      
Sbjct: 312 VEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRV---RGDGTLD--VTITTLR--- 363

Query: 332 LDAGEYTCYAENIRGNASGEISL 354
            D+G +TC A N  G A+  + +
Sbjct: 364 -DSGTFTCIASNAAGEATAPVEV 385

Promotes neurite outgrowth in hippocampal neurons. Involved in the regulation and maintenance of excitatory synapses. Induces the clustering of excitatory postsynaptic proteins, including DLG4, DLGAP1, GRIA1 and GRIN1.

Homo sapiens (taxid: 9606)

>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus GN=Lrig3 PE=1 SV=1

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 154/350 (44%), Gaps = 40/350 (11%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           S+++VL L++N ++ +TK      GLL L+ ++L  + I  +  D +++   L E+DL+ 
Sbjct: 263 SNMEVLQLDHNNLTEITKGWL--YGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTF 320

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPIT----------------ELR-----------AG 147
           N ++ L   +FLG   L  L++  N ++                +LR           +G
Sbjct: 321 NHLSRLDDSSFLGLSLLNALHIGNNKVSYIADCAFRGLTSLKTLDLRNNEISWTIEDMSG 380

Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
            F  L  L+ + LQ  +I S+ K A   L  LE L+L+GN +  L  + F     L+ L 
Sbjct: 381 AFSGLDRLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQSNAFSQMKKLQQLH 440

Query: 208 LDGNPWCCDCHLRSFRNWLLKSKLYSH-PLSCTEPGMLQTKHWDDVKAQEFAC----PPN 262
           L+ +   CDC LR    W+ ++   S    SC  P +L+ +    V    F C     P 
Sbjct: 441 LNTSSLLCDCQLRWLPQWVAENNFQSFVNASCAHPQLLKGRSIFTVSPDGFVCDDFPKPQ 500

Query: 263 VTIKESMVIREAGGNVTMSCYVY--GDPEPTILWLLNGQVLHNSSFDLLE--EEEGDALF 318
           +T++        G +V+ +C      D   T  W  + + L ++  +       +G  L 
Sbjct: 501 ITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELM 560

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
           E +  + L NV     G+Y C   N  G +S  +   L  IN+  + +KT
Sbjct: 561 EYTTILRLRNVEFTSEGKYQCVISNHFG-SSYSVKAKL-TINMLPSFTKT 608

Mus musculus (taxid: 10090)

>sp|D4A1J9|LRFN5_RAT Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Rattus norvegicus GN=Lrfn5 PE=1 SV=1

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 35/344 (10%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
           K  +F  + S +D     L L+ N IS++T  AF    L NL+ ++L ++ + ++  D F
Sbjct: 67  KRKDFANMTSLVD-----LTLSRNTISFITPHAFAD--LRNLRALHLNSNRLTKITNDMF 119

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
             L+ L  + L++NQ+  +    F     L+ L L+ N +  +      K+  L T+ L 
Sbjct: 120 SGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLD 179

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP-----------TPNLKTLSLDG 210
           H  I ++ K    HL  +  L++  N+L+ L     F            +P+   LS  G
Sbjct: 180 HNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGG 239

Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMV 270
           NP  C+C L     WL +        +C  P +L  +++  +  +EF C P +  + +  
Sbjct: 240 NPLHCNCELL----WLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHE 295

Query: 271 IRE-AGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFN 328
           +R   G   T+ C   GDPEP I W+   G+++ N++  L+ +           ++ +  
Sbjct: 296 MRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNG---------TLDILI 346

Query: 329 VTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWY 372
            T  D G +TC A N  G A+   ++DL  I L   L+ T++ +
Sbjct: 347 TTVKDTGAFTCIASNPAGEATQ--TMDLHIIKLPHLLNSTNNIH 388

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	610
328719738	624	PREDICTED: immunoglobulin superfamily co	0.926	0.905	0.531	1e-172
242008917	648	Amphoterin-induced protein 2 precursor,	0.957	0.901	0.497	1e-160
91080929	561	PREDICTED: similar to kek1 [Tribolium ca	0.880	0.957	0.525	1e-156
340717421	664	PREDICTED: leucine-rich repeats and immu	0.936	0.859	0.429	1e-134
350407431	664	PREDICTED: leucine-rich repeats and immu	0.972	0.893	0.423	1e-133
48137906	660	PREDICTED: leucine-rich repeat-containin	0.934	0.863	0.425	1e-130
307198227	672	Leucine-rich repeat-containing protein 2	0.904	0.821	0.427	1e-129
380030594	662	PREDICTED: leucine-rich repeats and immu	0.934	0.861	0.425	1e-129
332018256	680	Leucine-rich repeat-containing protein 2	0.944	0.847	0.417	1e-125
307168304	676	Leucine-rich repeat-containing protein 2	0.937	0.846	0.409	1e-122

>gi|328719738|ref|XP_003246846.1| PREDICTED: immunoglobulin superfamily containing leucine-rich repeat protein-like [Acyrthosiphon pisum]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 315/593 (53%), Positives = 417/593 (70%), Gaps = 28/593 (4%)

Query: 2   LAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLD 61
           + ++V++L  C  T G  DW DCP  C+CKW+ GKK+ALCKDA+FT +P +LD+D+QVLD
Sbjct: 7   VQLIVMVLVYCGTTFG--DWADCPTPCQCKWSSGKKTALCKDADFTDIPLSLDADMQVLD 64

Query: 62  LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH 121
           L++N + +L ++AFK +GLLNLQR++L+  GI  VH+D F+ L ILVE+DLSDN I  LH
Sbjct: 65  LSSNNLRHLPEDAFKKVGLLNLQRVFLRGCGIHNVHKDAFRELKILVELDLSDNLIGSLH 124

Query: 122 QDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181
           Q+TF GN+RL+VLYLNGNP+TE++  QFP L +L+T+ELQHCQI  +H+DA +HL++LES
Sbjct: 125 QETFQGNERLRVLYLNGNPLTEIKEVQFPVLQHLRTLELQHCQIKRIHRDAFLHLSSLES 184

Query: 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEP 241
           LNLNGN LK LSE+VF P   LKTLSLDGNPW CDCHLRSFRNW + S LYSHPLSC EP
Sbjct: 185 LNLNGNLLKWLSETVFLPISKLKTLSLDGNPWVCDCHLRSFRNWFVSSNLYSHPLSCIEP 244

Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301
            +L    W+++K  EFACPP V I  + V+ +A GN+T +C V GDPEP + W  NG  +
Sbjct: 245 NVLSGSRWENIKPPEFACPPVVKIDRNSVLEDA-GNITFTCKVTGDPEPEVSWYFNGHSI 303

Query: 302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
            N +  + E            ++ +FNV+D+ AGE+TC A N RG  S  +SL LPE+ +
Sbjct: 304 DNYTDRMDENRTWLDNNRMWSALHIFNVSDVVAGEFTCEARNSRGQMSANVSLALPEVAV 363

Query: 362 ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQ 421
           ATTLSK+ S Y++++ ++     ++  IG++ CVC+  +    RR  K   K S SF+D 
Sbjct: 364 ATTLSKSKSMYLVIVCVAASATVLLFVIGLTCCVCQV-KKSGGRRDSKTNFKGSTSFSDA 422

Query: 422 EKKLLDVSITTTDRHTGSCEALG--SQPDMELIEQSL-------AMEQPPVHITIESHAV 472
           +K+LLD SI+TT    GSCE LG  S  D+ELIEQSL         +Q PVHITIESH  
Sbjct: 423 DKRLLDASISTT--QAGSCEMLGGSSCQDLELIEQSLQNIPLAAVCDQQPVHITIESHDP 480

Query: 473 DPQVSVFPPPPEFSSNHLPT-STYGNIFISVSVSQEPPGSDP-PKYPDLIDMPHR---SV 527
           +  +S++PPPPEFS++ LP+ S +GNIFISVSVSQEPP  DP  +YPDL+DM HR   SV
Sbjct: 481 NSSLSLYPPPPEFSTSILPSVSGFGNIFISVSVSQEPP--DPESRYPDLLDMKHRQKQSV 538

Query: 528 SVGTGPGTN--PA--YFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGA 576
           SVGT    +  PA  Y+AT+PR+ R  +I+  S+  V P YDNMGPR+TA G+
Sbjct: 539 SVGTSSTHHIPPASSYYATMPRKKR--IIDHQSIKSVMPHYDNMGPRITATGS 589

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008917|ref|XP_002425241.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis] gi|212508982|gb|EEB12503.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 308/619 (49%), Positives = 418/619 (67%), Gaps = 35/619 (5%)

Query: 3   AVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDL 62
            +  +L+ A   +  SPDW DCP  CRCKW+ GKKSA C+DA  T +P TL++DIQVLDL
Sbjct: 5   VIASLLVLAAAWSVASPDWMDCPGPCRCKWSSGKKSAFCRDAGLTTVP-TLNADIQVLDL 63

Query: 63  NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ 122
             N I +L+K+ FKSIGLLNLQRI+L+N  ++E+H D F+ L+ILVE+DLS+N+I  +H 
Sbjct: 64  TRNIIPFLSKDLFKSIGLLNLQRIFLRNISLKEIHPDAFRNLSILVEIDLSENKIDKIHP 123

Query: 123 DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182
           +TF GNDRL+ L L+GNP+TEL   QFP L YLKTIELQ+C ++ ++KDA ++L  LE+L
Sbjct: 124 NTFYGNDRLRFLNLSGNPLTELVGNQFPPLKYLKTIELQNCYLNYINKDAFVNLPLLETL 183

Query: 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPG 242
           NLN N+L +++E+VF     LKTL LD NPW CDC LR FR WLL+S LYS PL+C +P 
Sbjct: 184 NLNSNQLNNVTENVFKLIKKLKTLKLDNNPWKCDCALRDFRTWLLQSNLYSVPLTCMDPP 243

Query: 243 MLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH 302
            L   HW+DV  +EFAC P VT+ E M+  E G NVT  C+V GDPEP ++WL NG+ ++
Sbjct: 244 SLSGLHWNDVSTEEFACSPKVTVTEVMIQEEVGNNVTFKCHVTGDPEPDVMWLYNGKPVN 303

Query: 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLA 362
            ++ D +  EE D   EK V ++++NV++LDAGEY+C A+N+RG++ G ++L LPE+  A
Sbjct: 304 GTANDQMYYEEKDGGLEKWVVMSIYNVSELDAGEYSCLAKNLRGSSIGNLTLMLPEVISA 363

Query: 363 TTLSKTDSWYM---LVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN 419
           TTLSKT+SW +   L+ G      S+ +++  +FC C     + + R++  ++K SVSF 
Sbjct: 364 TTLSKTESWLLIAGLIAGGVATFFSITLTLVFTFCFCGRKRRRKRGRRKT-ELKGSVSFT 422

Query: 420 DQEKKLLDVSITTTDRHTGSCEALG--SQPDMELIEQ-SLAMEQ-PPVHITIESHAVDPQ 475
           +QEKKLLDVSITTT     + E++   +QPDME++E  S+ +E   PVHITIESH  +  
Sbjct: 423 EQEKKLLDVSITTTTDRPSNSESVEQLNQPDMEMMESASIPLELCEPVHITIESHGTNNT 482

Query: 476 --------VSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSV 527
                   ++VFPPPPEFS++ LP   +GNIFISVSVSQEP      +YPDL+D+PHRS 
Sbjct: 483 NMVPLSVPLTVFPPPPEFSTSVLPAGAFGNIFISVSVSQEPSSDTVIRYPDLLDIPHRSK 542

Query: 528 SVGTGPG----------------TNPAYFATLPRRPRSKVIEPSS--LVRVGPKYDNMGP 569
           +                      T    +AT PRRPR K +  S+   VR+GP YDNMGP
Sbjct: 543 NSSARVSVGGGGGGVGPSEGGSLTTSQSYATFPRRPRPKSVTESNEPQVRLGPMYDNMGP 602

Query: 570 RVTAGGASILSLPDATSTE 588
           RVTAGG+S LSLP+   +E
Sbjct: 603 RVTAGGSSTLSLPEVEESE 621

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080929|ref|XP_974068.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270005942|gb|EFA02390.1| hypothetical protein TcasGA2_TC008070 [Tribolium castaneum]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 307/584 (52%), Positives = 400/584 (68%), Gaps = 47/584 (8%)

Query: 2   LAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLD 61
           +A V++LL   +    +PDWTDCP  CRCKW+ GKK+A+CK   F+A+P TLD ++QVLD
Sbjct: 1   MAAVILLLVTAMAL-AAPDWTDCPSPCRCKWSSGKKTAVCKGGGFSAVPDTLDGEMQVLD 59

Query: 62  LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH 121
           L+ N IS L  +AFKS+GLLNLQRI+L  +GI+EVH+D F+ LTILVEVDLS NQI  LH
Sbjct: 60  LSGNYISRLGNDAFKSVGLLNLQRIFLATAGIQEVHKDAFRDLTILVEVDLSHNQIKSLH 119

Query: 122 QDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181
            +TF GN+RL+VLYLNGNP+  L   QFP+LP+L+ +EL  CQ+  VHK+A +HL+ LE+
Sbjct: 120 PETFHGNERLRVLYLNGNPLRRLVQEQFPQLPHLRILELDGCQLEYVHKNAFVHLSVLET 179

Query: 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEP 241
           L+L  N L++LSE VF    +LKTL L+GNPW CDC LR FR+W L SKL S  L+CT+P
Sbjct: 180 LSLRQNLLRNLSEEVFMNFAHLKTLVLEGNPWKCDCELRGFRDWFLLSKLNSVSLTCTQP 239

Query: 242 GMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV 300
             L+ K W++V ++EFACPP V++  +S V  EAGGNV+  C+V GDPEP + WL  G  
Sbjct: 240 ERLEGKLWENVLSEEFACPPRVSVFPQSQVQAEAGGNVSFGCHVTGDPEPQVSWLYEGYP 299

Query: 301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEIN 360
           + N ++ +++ EEG  L +K  +I+++NV+D D G YTC A NI  + S  ++L LPE+ 
Sbjct: 300 I-NHTWLVIQAEEG--LLDKWANISVYNVSDTDTGVYTCTARNILDSVSLNVTLVLPEVV 356

Query: 361 LATTLSKTDSWYMLVLGISVCVVSV-IVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN 419
            ATT+SK++  + L  G+ V +V++  V +G S  VC     K ++R     MK SVSF 
Sbjct: 357 TATTVSKSEGGF-LWWGLLVALVTLGSVGLGASIAVCCLRGRKTQKR-----MKASVSFT 410

Query: 420 DQEKKLLDVSI-TTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSV 478
           +QEKKLLDVSI TTTDR TGSCE LG  P+MEL         PPVHITIES  +   ++V
Sbjct: 411 EQEKKLLDVSIATTTDRGTGSCEVLG--PEMEL--------DPPVHITIESEPL--PLAV 458

Query: 479 FPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPA 538
           FPPPPEF  N +P S YGNIFISVSVS++P  SD  + PDL+D+PHR+  V  G      
Sbjct: 459 FPPPPEF-GNVVP-SAYGNIFISVSVSRDP--SDASRCPDLLDLPHRAKPVYHG------ 508

Query: 539 YFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLP 582
             ATLPRRP +            P YDNMGPRVTA G+S LSLP
Sbjct: 509 -MATLPRRPCA-----------APHYDNMGPRVTAAGSSTLSLP 540

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717421|ref|XP_003397182.1| PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3-like [Bombus terrestris]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/642 (42%), Positives = 382/642 (59%), Gaps = 71/642 (11%)

Query: 1   MLAVVVIL--LAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQ 58
           +LA+ ++L   A        PDWTDCP TCRCKWT GKKSALC +A+ T+LP+ LD D+Q
Sbjct: 14  LLALFILLSTFALLSKAVAFPDWTDCPATCRCKWTSGKKSALCYNASLTSLPANLDPDMQ 73

Query: 59  VLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA 118
           VLDL+ NKI  L  E FK  GL+NLQR++L+N+GI ++H D+F+ + ILVE+DLSDN + 
Sbjct: 74  VLDLSGNKIPALQSEIFKRSGLVNLQRVFLRNAGIYKIHADSFRDMRILVEIDLSDNHVE 133

Query: 119 WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA 178
            L  DTFLGN+RL++L L+GNP+ +LR+ QFP L +L+ +ELQ C +  +H +A +HLT 
Sbjct: 134 MLEPDTFLGNERLRILILSGNPLGKLRSHQFPILQHLRNLELQRCSLSEIHGEAFVHLTG 193

Query: 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHP 235
           LESL L+ N L++L  SV    P LKTL+LDGN W CDC LR FR WL+    SKLYS P
Sbjct: 194 LESLRLDHNELEYLDVSVISSLPRLKTLTLDGNQWSCDCRLRDFRIWLIPSRPSKLYSVP 253

Query: 236 LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
             C+ P  L+ + W+DVK  EFAC P V +  S +  E  GN++++C   GDPEP + W 
Sbjct: 254 QVCSSPMRLEGRKWEDVKPAEFACEPEVFVLASSIQEETNGNLSLACLATGDPEPEVWWQ 313

Query: 296 LNG---------QVLHNSSFDLLEEEEGDALFEKSV-----------SITLFNVTDLDAG 335
           LNG         +  ++ ++      + D  + + V           ++T++N +D DAG
Sbjct: 314 LNGGPVNATKLTEQTYSGTYVAYATSDVDMAYNERVPSSSRLTDRWNNLTVYNASDGDAG 373

Query: 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVL---GISVCVVSVIVSIGMS 392
           EY+C+A+NI G A   +S+ +P +  A TLS++D+W + V    G +  +   I ++ ++
Sbjct: 374 EYSCFAKNIAGLARDTVSVAIPRVYTAPTLSQSDNWLLWVTLAGGGAAALCVSISAVLLA 433

Query: 393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT------DRHT--GSCEALG 444
            CVC     + +R + K K++ S SF DQEKKLLD+S+TTT      DR +  GS     
Sbjct: 434 LCVCGG--TRRQRAREKVKLQGSTSFGDQEKKLLDLSVTTTTPGNSNDRGSGHGSIVEAC 491

Query: 445 SQPDMELIEQSLAMEQPPVHITIESHAVDPQVS--------------VF-PPPPEFSSNH 489
           S  D+EL E+  ++  P    T+    + P+VS              +F PPPPEF+S  
Sbjct: 492 STGDLELAERG-SICDPMSAATVTVERLRPEVSSGSVTAMRAVPCAAMFPPPPPEFTSGV 550

Query: 490 LPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVS--VGTGPGTNPAY-----FAT 542
           LP   +GNIFISVS+ Q+   S    YPDL+D+P    S  V     T PA      FAT
Sbjct: 551 LPAGIFGNIFISVSMPQD---SSDRCYPDLLDIPVHGTSGVVNKTTSTLPAASSVSSFAT 607

Query: 543 LPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDA 584
           LPRR     +  S L      YDNMGPRVTA G+S  SL DA
Sbjct: 608 LPRR----ALRSSDLCS---PYDNMGPRVTANGSSAFSLTDA 642

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407431|ref|XP_003488086.1| PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3-like [Bombus impatiens]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 283/668 (42%), Positives = 392/668 (58%), Gaps = 75/668 (11%)

Query: 1   MLAVVVIL--LAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQ 58
           +LA+ ++L   A        PDWTDCP TCRCKWT GKKSALC +A+ T+LP+ LD D+Q
Sbjct: 14  LLALFILLSTFALLSKAVAFPDWTDCPATCRCKWTSGKKSALCYNASLTSLPANLDPDMQ 73

Query: 59  VLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA 118
           VLDL+ NKI  L  E FK  GL+NLQR++L+N+GI ++H D+F+ + ILVE+DLSDN + 
Sbjct: 74  VLDLSGNKIPALQSEIFKRSGLVNLQRVFLRNAGIYKIHADSFRDMRILVEIDLSDNHVE 133

Query: 119 WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA 178
            L  DTFLGN+RL++L L+GNP+ +LR+ QFP L +L+ +ELQ C +  +H +A +HLT 
Sbjct: 134 MLEPDTFLGNERLRILILSGNPLGKLRSHQFPILQHLRNLELQRCSLSEIHGEAFVHLTG 193

Query: 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHP 235
           LESL L+ N L++L  SV    P LKTL+LDGN W CDC LR FR WL+    SKLYS P
Sbjct: 194 LESLRLDHNELEYLDVSVISSLPRLKTLTLDGNQWSCDCRLRDFRIWLIPSRPSKLYSVP 253

Query: 236 LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
             C+ P  L+ + W+DVK  EFAC P V +  S +  E  GN++++C   GDPEP + W 
Sbjct: 254 QVCSSPMRLEGRKWEDVKPAEFACEPEVFVLASSIQEETNGNLSLACLATGDPEPEVWWQ 313

Query: 296 LNG---------QVLHNSSFDLLEEEEGDALFEKSV-----------SITLFNVTDLDAG 335
           LNG         +  ++ ++      + D  + + V           ++T++N +D DAG
Sbjct: 314 LNGGPVNATKLTEQTYSGTYVAYATSDVDMAYNERVPSSSRLTDRWNNLTVYNASDGDAG 373

Query: 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM---LVLGISVCVVSVIVSIGMS 392
           EY+C+A+NI G A   +S+ +P +  A TLS++D+W +   L  G +  + + I ++ ++
Sbjct: 374 EYSCFAKNIAGLARDTVSVAIPRVYTAPTLSQSDNWLLWVSLAGGGAAALCASISAVLLA 433

Query: 393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT------DRHT--GSCEALG 444
            CVC     + +R + K K++ S SF DQEKKLLD+S+TTT      DR +  GS     
Sbjct: 434 LCVCGG--TRRQRAREKVKLQGSTSFGDQEKKLLDLSVTTTTPGNSNDRGSGHGSIVEAC 491

Query: 445 SQPDMELIEQSLAMEQPPVHITIESHAVDPQVS--------------VF-PPPPEFSSNH 489
           S  D+EL E+  ++  P    T+    + P+VS              +F PPPPEF+S  
Sbjct: 492 STGDLELAERG-SICDPMSAATVTVERLRPEVSSGSVTAMRAVPCAAMFPPPPPEFTSGV 550

Query: 490 LPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVS--VGTGPGTNPAY-----FAT 542
           LP   +GNIFISVS+ Q+   S    YPDL+D+P    S  V       PA      FAT
Sbjct: 551 LPAGIFGNIFISVSMPQD---SSDRCYPDLLDIPVHGTSGVVNKTTSALPAASSVSSFAT 607

Query: 543 LPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDATSTEDIPSPPPPPTLCTP 602
           LPRR     +  S L      YDNMGPRVTA G+S  SL DA    D+   PPP      
Sbjct: 608 LPRR----ALRSSDLCS---PYDNMGPRVTANGSSAFSLTDA----DLRLSPPPXXXXIQ 656

Query: 603 LGVEYVSL 610
              E+VSL
Sbjct: 657 PPHEFVSL 664

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48137906|ref|XP_396829.1| PREDICTED: leucine-rich repeat-containing protein 24 isoform 1 [Apis mellifera]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/637 (42%), Positives = 377/637 (59%), Gaps = 67/637 (10%)

Query: 1   MLAVVVIL--LAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQ 58
           +LA+  +L  LA        PDWTDCP  CRCKWT GKKSALC DA  T+LP++LD D+Q
Sbjct: 14  LLALFFLLGTLALLSKAAAFPDWTDCPAVCRCKWTSGKKSALCPDAGLTSLPASLDPDMQ 73

Query: 59  VLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA 118
           VLDL+ NKI  L  E FK  GLLNLQR++L+N+GI ++H D+F+ + ILVE+DLSDN + 
Sbjct: 74  VLDLSGNKIPALQSEIFKRSGLLNLQRVFLRNAGIHKIHADSFRDMRILVEIDLSDNHVE 133

Query: 119 WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA 178
            L  DTFLGN+RL++L L+GNP+T LR+ QFP L +L+ +ELQ C +  +H +A ++LT 
Sbjct: 134 MLEPDTFLGNERLRILILSGNPLTRLRSHQFPLLQHLRNLELQRCSLSEIHGEAFVYLTG 193

Query: 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHP 235
           LESL L+ N L++L  SV    P LKTL+LDGN W CDC LR FR WL+    SKLYS P
Sbjct: 194 LESLRLDKNVLEYLDVSVISNLPRLKTLTLDGNRWSCDCRLRDFRTWLIPNGPSKLYSVP 253

Query: 236 LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
            +C+ P  L+ + W+DVK  EFAC P V +  S +  E  GN++++C   GDPEP + W 
Sbjct: 254 QACSSPMRLEGRKWEDVKPVEFACEPEVFVLASSIQEETNGNLSLACLATGDPEPEVWWQ 313

Query: 296 LNGQVLH-----------------NSSFDLL----EEEEGDALFEKSVSITLFNVTDLDA 334
           LNG  ++                  S  D +    E      L ++  ++T++N +D DA
Sbjct: 314 LNGGPVNATKLTEQIYTGTYVAYATSDVDTISSYNERSSPGRLVDRWNNLTVYNASDGDA 373

Query: 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM---LVLGISVCVVSVIVSIGM 391
           GEY+C+A+NI G A   +S+ +P +  A TLS++D+W +   L  G +  + + I ++ +
Sbjct: 374 GEYSCFAKNIAGLARDTVSVAIPRVYTAPTLSQSDNWLLWVSLAGGGAAALCASISAVLL 433

Query: 392 SFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT-------DRHTGSCEALG 444
           + CVC     +  R K   K++ S SF DQEKKLLD+S+TTT       DR +G    + 
Sbjct: 434 ALCVCGGTRRQTAREKV--KLQSSTSFGDQEKKLLDLSVTTTTTPGNSNDRGSGHGSIVE 491

Query: 445 --SQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPP-----------PPEFSSNHLP 491
             S  D+EL E+  ++  P    T+    + P++S  P            PPEF+S  LP
Sbjct: 492 GCSTGDLELAERG-SICDPMSAATVTVERLRPEMSGGPAMRTVPCVFPPPPPEFTSGVLP 550

Query: 492 TSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGTG-----PGTNPAYFATLPRR 546
              +GNIFISV+V Q+   +    YPDL+D+P  +     G     P ++ + FATLPRR
Sbjct: 551 PGIFGNIFISVAVPQD---ASDRCYPDLLDIPVHATGGAAGKTALPPASSVSSFATLPRR 607

Query: 547 PRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPD 583
                +  S L      YDNMGPRVTA G+S  SL D
Sbjct: 608 ----ALRSSDLC---SPYDNMGPRVTANGSSAFSLTD 637

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198227|gb|EFN79232.1| Leucine-rich repeat-containing protein 24 [Harpegnathos saltator]

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 362/627 (57%), Gaps = 75/627 (11%)

Query: 19  PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI 78
           PDWTDCP  CRCKWT GKKSALC DA  T+LP++LD D+QVLDL+ NKI  L  E FK  
Sbjct: 34  PDWTDCPAVCRCKWTSGKKSALCPDAGLTSLPASLDPDMQVLDLSGNKIPALQAEIFKRA 93

Query: 79  GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG 138
           GL+NLQR++L+++GI E+H D+FK + IL+E+DLSDN +  L  DTF+GN+RL++L L+G
Sbjct: 94  GLVNLQRVFLRDAGIHEIHADSFKDMRILIEIDLSDNHVMSLEPDTFVGNERLRILILSG 153

Query: 139 NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF 198
           NP+  L   QFP L +L+ +ELQ C +  +H +A  HLT LE L L+GN+L++L  SV  
Sbjct: 154 NPLGVLCDRQFPLLQHLRNLELQRCALTEIHGNAFAHLTGLEFLKLDGNQLQYLESSVIA 213

Query: 199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHPLSCTEPGMLQTKHWDDVKAQ 255
               LKTL+LDGN W CDC LR  R WL+    SKLYS    C+ P  L+ + W+DVK  
Sbjct: 214 GLSKLKTLTLDGNRWRCDCRLRGLRTWLIPDATSKLYSVSQVCSGPDKLKDRRWEDVKPV 273

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL------- 308
           EFAC P V +  S +  E  GN++++C   GDPEP + W LNG  ++ S  D        
Sbjct: 274 EFACEPEVFVSASSIQEETNGNLSLACLATGDPEPEVWWQLNGGPVNASRSDQPSYTGGL 333

Query: 309 ----------LEEEEGDALF---EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                          GD  F   E+  ++T++N ++ DAGEY C A NI G A   +S+ 
Sbjct: 334 VVYATSEVTGGSAANGDRSFRIAERWSNLTVYNASEGDAGEYACLARNIAGLARDTVSVT 393

Query: 356 LPEINLATTLSKTDSWYM---LVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM 412
           +P +  A TLS++D+W +   L  G +  V + I ++ ++ C C      +KR K   K+
Sbjct: 394 IPRVYTAPTLSQSDNWLLWVSLAGGGAAAVCASISAVLLALCFCGGGRRHSKREKV--KL 451

Query: 413 KQSVSFNDQEKKLLDVSITTT--------DRHTGSCEALG---SQPDMELIEQ------- 454
           + S SF DQEKKLLD+S+TTT        DR +G   +LG   S  D+EL E+       
Sbjct: 452 QGSASFGDQEKKLLDLSVTTTTTPGHNSNDRGSGQ-GSLGEACSTGDLELAERGSICDPM 510

Query: 455 -----SLAMEQPPVHITIESHAVDPQVSVF-PPPPEFSSNHLPTSTYGNIFISVSVSQEP 508
                ++   +P     + +    P  +VF PPPPEF+S  LP   +GNIFISVS+ Q+ 
Sbjct: 511 AAAAVTVGRLRPESGAAVNAIRAVPCTAVFPPPPPEFTSGVLPAGIFGNIFISVSLPQD- 569

Query: 509 PGSDPPKYPDLIDMPHRSVS-----------VGTGPGT-NPAYFATLPRRPRSKVIEPSS 556
             S    YPDL+D+P  +VS               P T N + FATLPRR          
Sbjct: 570 --SSERCYPDLLDIPVHAVSGVAALSAGVKTTAALPATVNVSSFATLPRRALRS------ 621

Query: 557 LVRVGPKYDNMGPRVTAGGASILSLPD 583
              +G  YDNMGPRVTA G+S  SL D
Sbjct: 622 -AEIGSPYDNMGPRVTANGSSAFSLTD 647

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030594|ref|XP_003698929.1| PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3-like [Apis florea]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/639 (42%), Positives = 377/639 (58%), Gaps = 69/639 (10%)

Query: 1   MLAVVVIL--LAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQ 58
           +LA+  +L  LA        PDWTDCP  CRCKWT GKKSALC DA  T+LP++LD D+Q
Sbjct: 14  LLALFFLLGTLALLSKAAAFPDWTDCPAVCRCKWTSGKKSALCPDAGLTSLPASLDPDMQ 73

Query: 59  VLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA 118
           VLDL+ NKI  L  E FK  GLLNLQR++L+N+GI ++H D+F+ + ILVE+DLSDN + 
Sbjct: 74  VLDLSGNKIPALQSEIFKRSGLLNLQRVFLRNAGIHKIHADSFRDMRILVEIDLSDNHVE 133

Query: 119 WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA 178
            L  DTFLGN+RL++L L+GNP+T LR+ QFP L +L+ +ELQ C +  +H +A ++LT 
Sbjct: 134 MLEPDTFLGNERLRILILSGNPLTRLRSHQFPLLQHLRNLELQRCSLSEIHGEAFVYLTG 193

Query: 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHP 235
           LESL L+ N L++L  SV    P LKTL+LDGN W CDC LR FR WL+    SKLYS P
Sbjct: 194 LESLRLDQNVLEYLEVSVISNLPRLKTLTLDGNQWSCDCRLRDFRTWLIPNGPSKLYSVP 253

Query: 236 LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
             C+ P  L+ + W+DVK  EFAC P V +  S +  E  GN++++C   GDPEP + W 
Sbjct: 254 QVCSSPTRLEGRKWEDVKPVEFACEPEVFVLASSIQEETNGNLSLACLATGDPEPEVWWQ 313

Query: 296 LNG----------------QVLHNSSFDLLEEEEGDA----LFEKSVSITLFNVTDLDAG 335
           LNG                 V + S  D    E   +    L ++  ++T++N +D DAG
Sbjct: 314 LNGGPVNATKLTEQIYSGTYVAYVSDVDTAYNERSSSPSGKLVDRWNNLTVYNASDGDAG 373

Query: 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM---LVLGISVCVVSVIVSIGMS 392
           EY+C+A+NI G A   +S+ +P +  A TLS++D+W +   L  G +  + + I ++ ++
Sbjct: 374 EYSCFAKNIAGLARDTVSVAIPRVYTAPTLSQSDNWLLWVSLAGGGAAALCASISAVLLA 433

Query: 393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT------DRHTGSCEALG-- 444
            CVC     +  R K   K++ S SF DQEKKLLD+S+TTT      DR +G    +   
Sbjct: 434 LCVCGGTRRQTAREKV--KLQSSTSFGDQEKKLLDLSVTTTTPGNSNDRGSGHGSIVEGC 491

Query: 445 SQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFP-------------PPPEFSSNHLP 491
           S  D+EL E+  ++  P    T+    + P++S  P             PPPEF+S  LP
Sbjct: 492 STGDLELAERG-SICDPMSAATVTVERLHPEMSGGPVNAMRTVPCVFPPPPPEFTSGVLP 550

Query: 492 TSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRS-------VSVGTGPGTNPAYFATLP 544
              +GNIFISV+V Q+   +    YPDL+D+P  +        +    P T+ + FATLP
Sbjct: 551 PGIFGNIFISVAVPQD---ASDRCYPDLLDIPVHATGGVVSKTTTALPPATSVSSFATLP 607

Query: 545 RRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPD 583
           RR     +  + L      YDNMGPRVTA G+S  SL D
Sbjct: 608 RR----ALRSTDLCS---PYDNMGPRVTANGSSAFSLTD 639

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018256|gb|EGI58861.1| Leucine-rich repeat-containing protein 24 [Acromyrmex echinatior]

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/654 (41%), Positives = 367/654 (56%), Gaps = 78/654 (11%)

Query: 4   VVVILLAACLG----TTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQV 59
           + + LL  C          PDWTDCP  CRCKWT GKKSALC DA  T+LP++LD D+QV
Sbjct: 15  LALFLLTGCFALLSRAAAFPDWTDCPAVCRCKWTSGKKSALCPDAGLTSLPASLDPDMQV 74

Query: 60  LDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
           LDL+ NKI  L +E FK  GL+NLQR++L+N+GI  +H ++FK + IL+E+DLSDN +  
Sbjct: 75  LDLSGNKIPALKEEIFKLAGLVNLQRVFLRNAGIYNIHANSFKDMRILIEIDLSDNHVTV 134

Query: 120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179
           L  DTFLGN+RL++L L+GNP+  LR  QFP L +L+ +ELQ C +  VH  A   LT L
Sbjct: 135 LKPDTFLGNERLRILILSGNPLGTLRNLQFPVLQHLRNLELQRCSLTEVHGQAFARLTGL 194

Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYSHPL 236
           E L L+ N+L++L  SV      LKTL+LDGN W CDC LR FR WL+    SKLYS P 
Sbjct: 195 EFLKLDTNQLEYLESSVISGLSRLKTLTLDGNQWRCDCRLRDFRTWLIPDVPSKLYSVPQ 254

Query: 237 SCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL 296
            C+ P  L+ + W+DVK  EFAC P V +  S +  E  GN++++C   GDPEP + W L
Sbjct: 255 ICSGPPRLEGRRWEDVKPTEFACEPKVFVLASSIQEETNGNLSLACRTSGDPEPEVWWQL 314

Query: 297 NG----------QVLHNSSFDLLEEEEGDALFEKSVS---------ITLFNVTDLDAGEY 337
           NG          Q    +       E G    +KS S         +T++N +D DAGEY
Sbjct: 315 NGGPVNATKSTDQPYMGTLVIYATSEAGIPSNDKSASRTVGDRWSNLTVYNASDSDAGEY 374

Query: 338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLV---LGISVCVVSVIVSIGMSFC 394
            C+A+NI G A   +S+ +P +  A TLS++D+W + V    G +    + I ++ +  C
Sbjct: 375 ACFAKNIAGLARDTVSVAIPRVYTAPTLSQSDNWLLWVSLAGGGAAAACASISAVLLVLC 434

Query: 395 VCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT-------DRHT--GSCEALGS 445
           +C  +   +KR K   K++ S SF DQEKKLLD+S+TTT       DR +  GS     S
Sbjct: 435 LCGGNRRHSKREKV--KLQSSSSFGDQEKKLLDLSVTTTTTPGNSNDRGSGHGSIGEACS 492

Query: 446 QPDMELIEQSLAME-QPPVHITIES-HAVDPQVSVFPPPP---------------EFSSN 488
             D+EL E+S   +      +T+E     D  V+     P               EF++ 
Sbjct: 493 TGDLELAERSSICDPMAAAAVTVERLRPADNSVNTIRAVPCTATATAGIFPPPPPEFTTG 552

Query: 489 HLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVS-----VGTGPGT-------- 535
            LP   +GNIFISVS+ Q+   S    YPDL+D+P  +VS     V TG  T        
Sbjct: 553 VLPAGIFGNIFISVSLPQD--ASSERCYPDLLDIPVHAVSGATTTVSTGGKTAALPSAAA 610

Query: 536 -NPAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPDATSTE 588
            N + FATLPRR        S+ V  G  YDNMGPR+TA G+S  SL D T  +
Sbjct: 611 INVSSFATLPRRALR-----STEVAAGSPYDNMGPRITANGSSAFSLTDMTDMD 659

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168304|gb|EFN61510.1| Leucine-rich repeat-containing protein 24 [Camponotus floridanus]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 265/647 (40%), Positives = 362/647 (55%), Gaps = 75/647 (11%)

Query: 4   VVVILLAACLG----TTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQV 59
           + + LL  C          PDWTDCP  CRCKW+ GKKSALC DA  T+LP++LD D+QV
Sbjct: 15  LALFLLTGCFALLSRAVAFPDWTDCPAVCRCKWSSGKKSALCPDAGLTSLPASLDPDMQV 74

Query: 60  LDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
           LDL+ N I  L  E FK  GL+NLQR+YL+ +GI ++H D+FK + ILVE+DLSDN +  
Sbjct: 75  LDLSGNMIPALQAEVFKLAGLVNLQRVYLRKAGIHKIHADSFKDMRILVEIDLSDNHVTT 134

Query: 120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179
           L  DTFLGN+RL++L L+GNP+  LR  QFP L +L+ +EL+ C +  +H  A   L+ L
Sbjct: 135 LEPDTFLGNERLRILILSGNPLGTLRNLQFPVLQHLRNLELEKCSLTEIHGKAFARLSNL 194

Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL---KSKLYS-HP 235
           E L L+GN+L++L  SV      LKT+SLDGN W CDC LR FRNWL+    SKLY+  P
Sbjct: 195 ELLKLDGNQLEYLEASVISNLSRLKTVSLDGNQWKCDCRLRDFRNWLIPDAPSKLYAVTP 254

Query: 236 LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
             CT P  L  + W+DVK  +FAC P V +  S +  E  GN++++C   GDPEP + W 
Sbjct: 255 QKCTGPSRLAGRKWEDVKPVDFACEPEVYVLASSIQEETNGNLSLACLASGDPEPEVWWQ 314

Query: 296 LNGQ-VLHNSSFDLL----------EEEEGDALFEKSVS----------ITLFNVTDLDA 334
           LNG  V    S D L           E    +   KSVS          +T++N +D DA
Sbjct: 315 LNGGPVNATKSTDQLYTGPLIVHTTSEVGASSKSNKSVSFKTLPDRWSNLTVYNASDSDA 374

Query: 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLV---LGISVCVVSVIVSIGM 391
           GEYTC A+NI G A   +S+ +P +  A TLS++D+W + V    G +    + I ++ +
Sbjct: 375 GEYTCLAKNIAGIARDTVSVAIPRVYTAPTLSQSDNWLLWVSLAGGGAAAACASISAVLL 434

Query: 392 SFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT-------DRHT--GSCEA 442
           + C+C     +  R++ K K++ S SF DQEKKLLD+S+TTT       DR +  GS   
Sbjct: 435 ALCLCGG--SRRHRKREKLKLQGSSSFGDQEKKLLDLSVTTTTTPGNSNDRGSGHGSLGE 492

Query: 443 LGSQPDMELIEQ-SLAMEQPPVHITIES-HAVDPQVSVFPPPP-------------EFSS 487
             S  D+E  E+ S+        +T+E     +  V+     P             EF++
Sbjct: 493 ACSTGDLEQAERGSICDPMAAAAVTVERLRPAESSVNAIRAVPCAAAGNVFPPPPPEFTT 552

Query: 488 NHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPHRSVSVGT-----------GPGTN 536
             LP   +GNIFISVS+ Q+   S    YPDL+D+P  +VS                  N
Sbjct: 553 GVLPAGIFGNIFISVSLPQD--ASSERCYPDLLDIPVHAVSGAATAVTASGKIIPSAAVN 610

Query: 537 PAYFATLPRRPRSKVIEPSSLVRVGPKYDNMGPRVTAGGASILSLPD 583
            + FATLPRR     +  + +   G  YDNMGPR+TA G+S  SL D
Sbjct: 611 VSSFATLPRR----ALRSAEVAGTGSPYDNMGPRITANGSSAFSLTD 653

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	610
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.736	0.537	0.434	1.3e-109
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.588	0.385	0.347	1.5e-64
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.534	0.364	0.345	4.1e-51
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.463	0.277	0.364	2.5e-49
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.536	0.371	0.350	1e-47
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.473	0.445	0.352	6.2e-46
MGI|MGI:3605040	521	Lrrc24 "leucine rich repeat co	0.531	0.621	0.285	7.5e-28
UNIPROTKB|Q50LG9	513	LRRC24 "Leucine-rich repeat-co	0.522	0.621	0.295	1.2e-27
ZFIN|ZDB-GENE-060503-496	594	lrrc24 "leucine rich repeat co	0.434	0.446	0.299	3.4e-27
UNIPROTKB|Q6WRI0	2623	IGSF10 "Immunoglobulin superfa	0.340	0.079	0.286	2.3e-22

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 945 (337.7 bits), Expect = 1.3e-109, Sum P(3) = 1.3e-109
 Identities = 206/474 (43%), Positives = 278/474 (58%)

Query:    12 CL-GTTGSPDWT-DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISY 69
             CL   T + DW+  C   C CKWT GKKSA+C     T +P+TL +++QVL LN+N I Y
Sbjct:    24 CLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDNHIPY 83

Query:    70 LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND 129
             L +E F ++GLLNLQRIYLK S ++ +H+++F+ L ILVE+DLSDN++  L +DTF+GND
Sbjct:    84 LNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTFMGND 143

Query:   130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
             RL++LYLNGNP+  L A QFP LP+L+T+++  C I  +   +L +L  LE LNL  N L
Sbjct:   144 RLRILYLNGNPLKRLAAYQFPILPHLRTLDMHDCLISYIDPMSLANLNLLEFLNLKNNLL 203

Query:   190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHW 249
             + LSE VF    NLKTLSL+ NPW C+C LR FR W + S+L S  L C  P   + + W
Sbjct:   204 ESLSEYVFQHMANLKTLSLEENPWQCNCKLRKFRGWYVNSRLSSVSLVCKGPPAQKDRTW 263

Query:   250 DDVKAQEFACPPNVTIKESMVIR--EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307
             D V  + F CPP V I  +  ++  + G N T SC VYGDP P + W LNG++L N +  
Sbjct:   264 DSVDDELFGCPPRVEIFNNEEVQNIDIGSNTTFSCLVYGDPLPEVAWELNGKILDNDN-- 321

Query:   308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSK 367
             +L E E  A  +   ++T+FNVT LDAG Y C   N  G+ +  IS+ L EI +   L K
Sbjct:   322 VLFESESIASDKLWSNLTVFNVTSLDAGTYACTGSNSIGSMTQNISIYLSEI-VQHVLEK 380

Query:   368 TDS--WYM-LVLGXXXXXXXXXXXXGMSFCVC----RAHEHXXXXXXXXXXXXQSVSFND 420
             T    WY  L++G             +  C+C    R H H             SVSFND
Sbjct:   381 TPETFWYFGLIMGIFGTVFLLISISFV-VCLCKRTTRQHRHANKAGVKS-----SVSFND 434

Query:   421 QEKKLLDVSITTTDRHTGSCEALGSQPD---MELIEQS-LAMEQPPVHITIESH 470
             QEKKLLD S+TTT    G    + +QP    M   + + +   Q  +H  +ESH
Sbjct:   435 QEKKLLDSSVTTTTNDRGDSYGIDNQPTSIGMNKGDSAGMGFNQIEIH-AVESH 487

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 596 (214.9 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
 Identities = 129/371 (34%), Positives = 193/371 (52%)

Query:    15 TTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEA 74
             T G+ DW     TC C+W  GKKSA CK+   T +P  + +++QVLD  +N+I  L +E 
Sbjct:    33 TAGTTDWMQSCGTCHCQWNSGKKSADCKNKALTKIPQDMSNEMQVLDFAHNQIPELRREE 92

Query:    75 FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134
             F   GL N+ +I+L+N  I+EVHR+ FK L IL+E+DLS N+I  LH  TF G ++L+ +
Sbjct:    93 FLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPGTFAGLEKLRNV 152

Query:   135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
              +N N I  L    F  L +L  IE ++ ++  V         AL +++L  NRL HL +
Sbjct:   153 IINNNEIEVLPNHLFVNLSFLSRIEFRNNRLRQVQLHVFAGTMALSAISLEQNRLSHLHK 212

Query:   195 SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKA 254
               F     L  LSL GN W C C L+ FR++ +  +LY+ P  C EP  L+ K W +V +
Sbjct:   213 ETFKDLQKLMHLSLQGNAWNCSCELQDFRDFAISKRLYTPPTDCQEPPQLRGKLWSEVPS 272

Query:   255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--------SSF 306
             + FAC P +       I     N+++ C + G P P + W+ N + L          +S 
Sbjct:   273 ENFACRPRILGSVRSFIEANHDNISLPCRIVGSPRPNVTWVYNKRPLQQYDPRVRVLTSV 332

Query:   307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLS 366
             + + E+    L  +   + +  V   D G YTC A+N  G A  E  L L   + A  +S
Sbjct:   333 EQMPEQPSQVLTSE---LRIVGVRASDKGAYTCVADNRGGRAEAEFQL-LVSGDYAGAVS 388

Query:   367 KTDSWYMLVLG 377
              +D   M  +G
Sbjct:   389 ASDGMGMGAIG 399

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 525 (189.9 bits), Expect = 4.1e-51, Sum P(2) = 4.1e-51
 Identities = 118/342 (34%), Positives = 179/342 (52%)

Query:    25 PDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQ 84
             P+ C CKW  GK++  C     + LP  +D   QVL+ + N +  L  E F  + LLNLQ
Sbjct:    22 PEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQVLQSERFLRMDLLNLQ 81

Query:    85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL 144
             +IYL  + +  +H   F+ LT LVE+DLS+N +  +  +TF     L  L L+GNPI EL
Sbjct:    82 KIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYSSLMRLSLSGNPIREL 141

Query:   145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLK 204
             +   F  L +L T+EL +CQ+  +  +A + +  LE L L+GNR+  +  +   P  +L 
Sbjct:   142 KTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRIGFIQGTHILPK-SLH 200

Query:   205 TLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS----CTEPGMLQTKHWDDVKAQEFACP 260
              +SL  N W CDC L     WL+    Y+ PL+    C EP  L+ +    ++ ++ AC 
Sbjct:   201 GISLHSNRWNCDCRLLDIHFWLVN---YNTPLAEEPKCMEPARLKGQVIKSLQREQLACL 257

Query:   261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-------FDLLEEEE 313
             P V+ + S      G N++++C V   PEP +LWL NGQV+ N S       +  ++E  
Sbjct:   258 PEVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSLMDNLHMYYYIDETI 317

Query:   314 G-DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             G     EK   I ++NV   D G ++C  +NI G      +L
Sbjct:   318 GVSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTL 359

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 2.5e-49, Sum P(2) = 2.5e-49
 Identities = 104/285 (36%), Positives = 154/285 (54%)

Query:    23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
             +CP  C CKW  GK+S LC +AN T +P  LD+  Q+LDL+ N+I  +  ++F +  LLN
Sbjct:    78 ECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSGNEIQLIPDDSFATAQLLN 137

Query:    83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
             LQ++YL    +R + R  F+ L  LVE+DLS N ++ +          L+ L L+GNPI 
Sbjct:   138 LQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLALYHVSELRELRLSGNPIL 197

Query:   143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL-TALESLNLNGNRLKHLSESVFFPTP 201
              +    F  +P L  +EL  C++  +   A   L ++LE L L+GNRL  +         
Sbjct:   198 RVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLSEVRSGTITSLA 257

Query:   202 NLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSH-PLSCTEPGMLQTKHWDDVKAQEFACP 260
             +L  L L  N W C C LR  R W+L+  + S  P +C  P  L  + WD +   +FAC 
Sbjct:   258 SLHGLELARNTWNCSCSLRPLRAWMLQQNIPSGIPPTCESPPRLSGRAWDKLDVDDFACV 317

Query:   261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
             P +   ++      G N+TMSCYV G P+P + WLL  +++ N S
Sbjct:   318 PQIVATDTTAHGVEGRNITMSCYVEGVPQPAVKWLLKNRLIANLS 362

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 1.0e-47, P = 1.0e-47
 Identities = 120/342 (35%), Positives = 175/342 (51%)

Query:    24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
             C   C CKW  GK++  C D +   +P  +D + QVLD++ NK+  L+ E F    LLNL
Sbjct:    90 CQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANLLNL 149

Query:    84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPIT 142
             Q++YL+N  I E+ R+TFK LT LVE+DLS N +  +     LG+   L+ L L  N I 
Sbjct:   150 QKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTV-PSLALGHIPSLRELTLASNHIH 208

Query:   143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
             ++ +  F   P L  ++L HC I ++   A   L  L  L LNGN+L  L          
Sbjct:   209 KIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKTIETLSR 268

Query:   203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTE-PGMLQTKHWDDVKAQEFAC 259
             L  + L  NPW CDC LR  + WL+K  +  +P++  C+  P  +  + + D+   EFAC
Sbjct:   269 LHGIELHDNPWLCDCRLRDTKLWLMKRNI-PYPVAPVCSGGPERIIDRSFADLHVDEFAC 327

Query:   260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL-HNSSFD------LLEEE 312
              P +      V    G N +++C     P   I W  NG++L +NS+F       +LE+ 
Sbjct:   328 RPEMLPISHYVEAAMGENASITCRARAVPAANINWYWNGRLLANNSAFTAYQRIHMLEQV 387

Query:   313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             EG   FEK   + L N  + D+ E+ C AEN  G A    +L
Sbjct:   388 EGG--FEKRSKLVLTNAQETDSSEFYCVAENRAGMAEANFTL 427

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 103/292 (35%), Positives = 162/292 (55%)

Query:    16 TGSPDWT-DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEA 74
             + S DW  DC + C CKW  GKK+A C++ + + +P  L  ++QVLDL++N I YL + A
Sbjct:    33 SASADWLLDCGN-CHCKWNSGKKTADCRNLSLSGVPEYLSPEVQVLDLSHNHIFYLEENA 91

Query:    75 FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134
             F +  L NLQ++ ++N  ++ +++ +F  L IL+E+DLS+N +  L  + F    +++ +
Sbjct:    92 FLTTHLQNLQKLLIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLPNVFDCLSKVRAI 151

Query:   135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
             +LNGN +  LR G F  L YL  IEL+  ++ S+   A + +  L  + L+ N L  L  
Sbjct:   152 FLNGNLLQALRHGVFRNLKYLHKIELKRNRLVSIDAKAFVGVPLLSQIYLDNNELTKLRV 211

Query:   195 SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKA 254
               F     L  LSL  NPW C C L+ FR++++   LY+ P SC  P  L+ + W + + 
Sbjct:   212 ESFQDLTKLTALSLVENPWNCTCDLQMFRDFVIGMNLYTPPTSCHYPLQLRGRLWIEDQP 271

Query:   255 QEFACPPNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
             + FAC P +     S  I  +  NVT+ C V+G P   I W    QV  + S
Sbjct:   272 EAFACKPKIVYPTLSTSINTSKENVTLICRVHGSPNTVIAWDYTNQVYESRS 323

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

MGI|MGI:3605040 Lrrc24 "leucine rich repeat containing 24" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 7.5e-28, P = 7.5e-28
 Identities = 98/343 (28%), Positives = 156/343 (45%)

Query:    19 PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI 78
             P  T CP  CRC       +  C       +P  +    Q L L +N I++L + +   +
Sbjct:    26 PRATGCPAACRCY----SATVECGALRLRVVPPGIPPGTQTLFLQDNSIAHLEQGSLAPL 81

Query:    79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG 138
               L  + +YL N+ +R +    F+    L+E+ L+ N++  L    F+G  +L+VLYL G
Sbjct:    82 AAL--RHLYLHNNTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFVGLVQLRVLYLAG 139

Query:   139 NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF 198
             N + +L    F  LP L+ + LQ   I  +   AL  L++L  L+L+ N+L  +S+    
Sbjct:   140 NQLAKLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISKEALQ 199

Query:   199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKS--KLYSH---PLSCTEPGMLQTKHWDDVK 253
             P  +L+ L L  NPW CDC L    +W+ +   +L S     ++C EP  L  +   +V 
Sbjct:   200 PLSSLQVLRLTENPWRCDCALHWLGSWIKEGGRRLLSSRDKKITCAEPPRLALQSLLEVS 259

Query:   254 AQEFAC-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
                  C PP+V ++        G ++ ++C   G P+P ++W    Q          + E
Sbjct:   260 GGSLICIPPSVNVEPPEFTANLGEDLQVACQASGYPQPLVVWRKVPQPRDGKPQAQAQLE 319

Query:   313 EG-DALFEKSVSIT----LF--NVTDLDAGEYTCYAENIRGNA 348
              G   L       T    LF  N+T   AG+Y C A N  G A
Sbjct:   320 GGAPGLGGHGTRDTGSGMLFLTNITLAHAGKYECEAANAGGKA 362

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q50LG9 LRRC24 "Leucine-rich repeat-containing protein 24" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 100/338 (29%), Positives = 151/338 (44%)

Query:    24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
             CP  CRC       +  C       +P  +    Q L L +N I+ L   A   +  L  
Sbjct:    23 CPAACRCY----SATVECGALRLRVVPLGIPPGTQTLFLQDNNIARLEPGALAPLAAL-- 76

Query:    84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             +R+YL N+ +R +    F+    L+E+ L+ N++  L    F+G  +L+VLYL GN +  
Sbjct:    77 RRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQLRVLYLAGNQLAR 136

Query:   144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
             L    F  LP L+ + LQ   I  +   AL  L++L  L+L+ N+L  +S     P  +L
Sbjct:   137 LLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISREALQPLASL 196

Query:   204 KTLSLDGNPWCCDCHLRSFRNWLLKS--KLYS---HPLSCTEPGMLQTKHWDDVKAQEFA 258
             + L L  NPW CDC L     W+ +   +L +     + C EP  L  +   DV      
Sbjct:   197 QVLRLTENPWRCDCALHWLGAWIKEGGQRLLTSRDRKIMCAEPPRLALQSLLDVSHSSLI 256

Query:   259 C-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD-A 316
             C PP+V ++   +    G ++ ++C   G P+P + W    Q          + E G   
Sbjct:   257 CIPPSVHVQPLELTANLGEDLRVACQASGYPQPLVTWRKVPQPREGRPRAQAQLEGGLLG 316

Query:   317 LFEKSVSIT----LF--NVTDLDAGEYTCYAENIRGNA 348
             L   S S T    LF  N+T   AG+Y C A N  G A
Sbjct:   317 LGGHSASDTGSGMLFLSNITLAHAGKYECEASNAGGAA 354

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060503-496 lrrc24 "leucine rich repeat containing 24" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 3.4e-27, P = 3.4e-27
 Identities = 83/277 (29%), Positives = 134/277 (48%)

Query:    24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
             CP  CRC ++L   +  C       +P  +    Q + L +N I  + +     +G L+ 
Sbjct:    24 CPSGCRC-YSL---TVECGSIGIKEIPQGITQGTQTIFLQDNAIGQIRQRDLSDLGQLHY 79

Query:    84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
               +YL+N+ I  +    F+ L +L+E+ L+ N+I  +  D F G D L++LYL GN I  
Sbjct:    80 --LYLQNNSISTLEPGAFRSLGLLLELALNGNRIHLITADVFRGLDHLRILYLAGNQINR 137

Query:   144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
             L    F  L  L+ + LQ   +  +   AL+ L++L  L+L+ N L+ LS +   P  +L
Sbjct:   138 LEDYTFRGLQRLQELHLQENVLEVLGDQALVGLSSLALLDLSRNNLRTLSPASLKPLVSL 197

Query:   204 KTLSLDGNPWCCDCHLRSFRNWLLKS--KLYSHP---LSCTEPGMLQTKHWDDVKAQEFA 258
             + L +  NPW CDC L   R W+ +   +L S     + C EP  L      +V      
Sbjct:   198 QVLRVTDNPWRCDCALHWLRGWINEEGQRLLSSAERRMLCAEPPRLSHLSLVEVPPNSLV 257

Query:   259 C-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILW 294
             C PP V ++ S +    G ++ +SC   G P+P + W
Sbjct:   258 CIPPVVQLEPSHLTVRLGESLRVSCQASGYPQPQVTW 294

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6WRI0 IGSF10 "Immunoglobulin superfamily member 10" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 64/223 (28%), Positives = 106/223 (47%)

Query:    12 CLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLT 71
             CL  T  P    CP  C C          C     T++P ++  +++ ++L  N +  L 
Sbjct:    19 CLVAT--PGGKACPRRCACYMPT---EVHCTFRYLTSIPDSIPPNVERINLGYNSLVRLM 73

Query:    72 KEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL 131
             +  F   GL  L+ + L ++GI  +   TF  L  L  + +S N++  L +DTF G   L
Sbjct:    74 ETDFS--GLTKLELLMLHSNGIHTIPDKTFSDLQALQVLKMSYNKVRKLQKDTFYGLRSL 131

Query:   132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES--------LN 183
               L+++ N I  +    F  L +L+ + L+  Q+  +H D  + L+ L+         L 
Sbjct:   132 TRLHMDHNNIEFINPEVFYGLNFLRLVHLEGNQLTKLHPDTFVSLSYLQIFKISFIKFLY 191

Query:   184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
             L+ N L  L + +    P+L +L L GNPW CDCHL+   +W+
Sbjct:   192 LSDNFLTSLPQEMVSYMPDLDSLYLHGNPWTCDCHLKWLSDWI 234

GO:0001503 "ossification" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	610
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-12
smart00409	85	smart00409, IG, Immunoglobulin	1e-12
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	8e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-11
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-11
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-09
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-08
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	5e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	5e-08
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	3e-07
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	5e-07
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	7e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-07
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	3e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	3e-06
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	8e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-05
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-05
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	7e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-05
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	7e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	6e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	7e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	7e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	7e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	9e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.002
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.002
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +V ++E       G +   +C V GDP+PT+ W  +GQ L +S    +  E G     
Sbjct: 7   PKDVEVQE-------GESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTY--- 56

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++T+ NV   D G+YTC A N  G A     L
Sbjct: 57  ---TLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 63.7 bits (156), Expect = 5e-13
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
            LK L L+ N +T +  G F  LP LK ++L    + S+  +A   L +L SL+L+GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP+VT+KE       G +VT+SC   G P P + W   G  L   S        G     
Sbjct: 1   PPSVTVKE-------GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS---- 49

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            + ++T+ NVT  D+G YTC A N  G+AS   +L
Sbjct: 50  -TSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP+VT+KE       G +VT+SC   G P P + W   G  L   S        G     
Sbjct: 1   PPSVTVKE-------GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS---- 49

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            + ++T+ NVT  D+G YTC A N  G+AS   +L
Sbjct: 50  -TSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 61.5 bits (149), Expect = 8e-12
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP +  ++S V   A  G +VT++C   G PEPT+ W  +G+ + +        EE  + 
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES-------GEEKYSF 53

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            E    +T+ +V  LD  EYTC AEN  G    EI L
Sbjct: 54  NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
           VT++C   G P PTI WL NG+ L +S                S ++T+ NVT  D+G Y
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVL--TRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 338 TCYAENIRGNASGEIS 353
           TC A N  G  S  ++
Sbjct: 59  TCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G +VT++C   G+P P I WL +G+ L           E +       ++T+ +V+  D+
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPL----------PESNRFVASGSTLTIKSVSLEDS 51

Query: 335 GEYTCYAEN 343
           G YTC AEN
Sbjct: 52  GLYTCVAEN 60

Length = 63

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           GG+V + C     P+PTI W    ++L NSS  +    +G        S+ + NVT  D 
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSS-RICIWPDG--------SLEILNVTKSDE 51

Query: 335 GEYTCYAENIRGNASGEISLDL 356
           G+YTC+AEN  G A+   SL +
Sbjct: 52  GKYTCFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           LK+++L + ++  +   A   L  L+ L+L+GN L  +S   F   P+L++L L GN 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
           L  +DLS+N++  +    F G   LKVL L+GN +T +    F  LP L++++L    +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 10/77 (12%)

Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
           V   C V GDP PT+LW      L     ++L++        KS+ I   NVT  D G Y
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDD--------KSLKIR--NVTAGDEGSY 50

Query: 338 TCYAENIRGNASGEISL 354
           TC AEN+ G      SL
Sbjct: 51  TCEAENMVGKIEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           ++ LDL+NN+++ +   AFK  GL NL+ + L  + +  +  + F  L  L  +DLS N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 117 I 117
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 82  NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
           NL+ + L N+ +  +    FK L  L  +DLS N +  +  + F G   L+ L L+GN +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P  VTI E       G  + ++C V+GDP+P + WL N Q L  S    ++ E+G     
Sbjct: 8   PDVVTIME-------GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG----- 55

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           K  S+T+  V+  D+G+Y    +N  G  + ++++
Sbjct: 56  KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 50.0 bits (119), Expect = 5e-08
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           GG V + C     P+P   W    ++L N+S   + ++          S+ + N+T LD 
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---------SLEILNITKLDE 51

Query: 335 GEYTCYAENIRGNASGEISLDL 356
           G YTC+AEN RG A+    L +
Sbjct: 52  GSYTCFAENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G    + C   G P+PTI W LNG  +     D     +G  L        L NV   D 
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTL-------ILSNVQPNDT 53

Query: 335 GEYTCYAENIRGNA 348
             Y C A N+ G  
Sbjct: 54  AVYQCNASNVHGYL 67

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 12/95 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P  VTI E       G  + ++C V+G+P+P ++W  N Q +  S    ++ E+G     
Sbjct: 8   PDVVTIME-------GKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQG----- 55

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           K  S+T+  VT  D+G+Y+   +N  G  + ++++
Sbjct: 56  KYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPGMLQTKHWDDVKAQEFACP 260
           NP+ CDC LR    WL  ++    P+   C  P  L+    + +   EF CP
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGPLLELL-HSEFKCP 51

Length = 51

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
           G  V   C VY D +P I WL     NG          +   +  G    +K + +  L 
Sbjct: 1   GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60

Query: 328 NVTDLDAGEYTCYAEN 343
           NVT  DAGEYTC A N
Sbjct: 61  NVTFEDAGEYTCLAGN 76

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 8e-07
 Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 53  LDSDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVD 111
           L S+++ LDL++NKI    +     +  L NL+ + L  + + ++ +     L+ L  +D
Sbjct: 138 LKSNLKELDLSDNKI----ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN-LSNLNNLD 192

Query: 112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
           LS N+I+ L  +  L +  L+ L L+ N I EL       L  L  +EL + ++  +  +
Sbjct: 193 LSGNKISDLPPEIELLSA-LEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLP-E 249

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           ++ +L+ LE+L+L+ N++  +S        NL+ L L GN 
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288

Length = 394

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
           +T   S+ + E G +   SC V G+P PT+ W+  GQ++ +S    +   E  + FE S 
Sbjct: 7   LTKPRSLTVSE-GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEIS- 64

Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 V   D G YT   EN  G    + +L
Sbjct: 65  -----KVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G +VT++C V G P+  + W   G+ L  S+         D     S+++T+ NVT  D+
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEEST-----TVGTDENRVSSITLTISNVTPEDS 55

Query: 335 GEYTCYA 341
           G YTC  
Sbjct: 56  GTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P ++ +K        G NVT+ C+  G+P P I W             +LE     A   
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWR-----------KILEPMPATAEIS 49

Query: 320 KSVSI-TLFNVTDLDAGEYTCYAENIRG 346
            S ++  +FN+   D G Y C AENI+G
Sbjct: 50  MSGAVLKIFNIQPEDEGTYECEAENIKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G NVT+ C+  G+P P I W    + +  S     E     A+ +      + N+   D 
Sbjct: 16  GQNVTLECFALGNPVPQIKW----RKVDGSMPSSAEISMSGAVLK------IPNIQFEDE 65

Query: 335 GEYTCYAENIRG 346
           G Y C AENI+G
Sbjct: 66  GTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 275 GGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
           G   T+ C   GDPEP I W+  +G+++ NSS  L+ +         ++ I +  V   D
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD-------NGTLDILITTVK--D 51

Query: 334 AGEYTCYAENIRGNASGEISL 354
            G +TC A N  G A+  + L
Sbjct: 52  TGSFTCIASNAAGEATATVEL 72

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 12/82 (14%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G ++   C   G+P P   WL NGQ L  +S + +E E GD      + IT  +++  D+
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQPL--ASENRIEVEAGD------LRITKLSLS--DS 63

Query: 335 GEYTCYAENIRGN--ASGEISL 354
           G Y C AEN  G   AS E+++
Sbjct: 64  GMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
           P +T  E+    E    +T++C   GDP P+I W  + + + +    L    +G  +   
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTL----DGHIVVRS 58

Query: 321 SV---SITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                S+TL  +   DAGEY C A N  G  S  + L++
Sbjct: 59  HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 278 VTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
           + + C   G P P I W+ + G        +L  +      F K++ I   NV++ D GE
Sbjct: 1   LLLECIAEGLPTPEISWIKIGG--------ELPADRTKFENFNKTLKID--NVSEEDDGE 50

Query: 337 YTCYAENIRGNASGEIS 353
           Y C A N  G+A   IS
Sbjct: 51  YRCTASNSLGSARHTIS 67

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           ++ LDL+ N +S L K       L NL    L  + I ++     + L+ L E+DLS+N 
Sbjct: 165 LKNLDLSFNDLSDLPKLLSNLSNLNNL---DLSGNKISDLP-PEIELLSALEELDLSNNS 220

Query: 117 IAWLHQDTFLGND-RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           I  L   + L N   L  L L+ N + +L       L  L+T++L + QI S+   +L  
Sbjct: 221 IIEL--LSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSI--SSLGS 275

Query: 176 LTALESLNLNGNRLKHL 192
           LT L  L+L+GN L + 
Sbjct: 276 LTNLRELDLSGNSLSNA 292

Length = 394

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           GG  T+ C   G P P + W++ G ++  +  D LE            ++ L N+T    
Sbjct: 15  GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETT------VDIYNLQLSNITSETQ 68

Query: 335 GEYTCYAENIRGNASGEISL 354
              TC AEN  G A+  + +
Sbjct: 69  TTVTCTAENPVGQANVSVQV 88

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
             AG  V + C   G+P PTI WL +G+      F       G  + +K  ++ L +V  
Sbjct: 6   VPAGSTVRLKCPASGNPRPTITWLKDGK-----PFKKEHRIGGYKVRKKKWTLILESVVP 60

Query: 332 LDAGEYTCYAEN 343
            D+G+YTC  EN
Sbjct: 61  SDSGKYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 15/80 (18%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSS---FDLLEEEEGDALFEKSVSIT------ 325
           G +V   C VY D +P I WL + +V  N S    D L       L    ++ T      
Sbjct: 1   GSDVEFHCKVYSDAQPHIQWLKHVEV--NGSKYGPDGLPYVT--VLKVAGINTTDNESEV 56

Query: 326 --LFNVTDLDAGEYTCYAEN 343
             L NV+  DAGEYTC A N
Sbjct: 57  LYLRNVSFDDAGEYTCLAGN 76

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 277 NVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
           ++   C V G P PT+ W+ NG  V+ +  F +++E            + +  +   D G
Sbjct: 1   DIVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN----------LQVLGLVKSDEG 50

Query: 336 EYTCYAENIRGNASGEISL 354
            Y C AEN  GN      L
Sbjct: 51  FYQCIAENDVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP +    S +I   G   T++C   G P PTI WL NGQ L     D         +  
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD----PRSHRIVL 56

Query: 320 KSVSITLFNVT-----DLDAGEYTCYAENIRGNA 348
            S S+    V        D G Y C A N  G A
Sbjct: 57  PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G  V  +C   G P P I W LN   + +S+   +  E G        ++T+ +V + D 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYG------TLTIRDVKESDQ 54

Query: 335 GEYTCYAENIRG 346
           G YTC A N RG
Sbjct: 55  GAYTCEAINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 51/198 (25%), Positives = 75/198 (37%), Gaps = 42/198 (21%)

Query: 38  SALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGL----LNLQRIYLKNSG 92
           +AL  D     L S L  S +Q L LNNN +         + GL      L+++ L  + 
Sbjct: 91  NALGPD-GCGVLESLLRSSSLQELKLNNNGLG-DRGLRLLAKGLKDLPPALEKLVLGRNR 148

Query: 93  IR----EVHRDTFKYLTILVEVDLSDNQ-----IAWLHQDTFLGNDRLKVLYLNGNPITE 143
           +     E      +    L E++L++N      I  L +     N  L+VL LN N +T+
Sbjct: 149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTD 207

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-----HLSESVFF 198
             A                        + L  L +LE LNL  N L       L+ ++  
Sbjct: 208 EGASAL--------------------AETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247

Query: 199 PTPNLKTLSLDGNPWCCD 216
           P  +L TLSL  N    D
Sbjct: 248 PNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 278 VTMSCYVYGDPEPTILWLLNG-QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
           V + C   GDPEPTI W  +G QV  +  F +    EG         + + +V   D G 
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI--SPEG--------YLAIRDVGVADQGR 50

Query: 337 YTCYAENIRGNASGEISL 354
           Y C A N  G AS  + L
Sbjct: 51  YECVARNTIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 278 VTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
           + + C   G P P + W  ++G +  N +              K+  + L NV + D GE
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRT--------KKLNNNKT--LQLDNVLESDDGE 50

Query: 337 YTCYAENIRGNASG 350
           Y C AEN  G+A  
Sbjct: 51  YVCTAENSEGSARH 64

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
           + R  G +V + C   G+P P I WL + +         L   E     +K  +++L N+
Sbjct: 4   IARPVGSSVRLKCVASGNPRPDITWLKDNK--------PLTPTEIGESRKKKWTLSLKNL 55

Query: 330 TDLDAGEYTCYAENIRG--NASGEI 352
              D+G+YTC+  N  G  NA+ ++
Sbjct: 56  KPEDSGKYTCHVSNRAGEINATYKV 80

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
             G +VT++C   G+P P   W  +G  L +S          +  F  +VS         
Sbjct: 12  FEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ---------NGFFTPNVSAE------- 55

Query: 333 DAGEYTCYAENIRG 346
           D+G YTC A N  G
Sbjct: 56  DSGTYTCVASNGGG 69

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
           A   V   C   G+P PT+ WL NG+      F       G  +  +  S+ + +V   D
Sbjct: 8   AANTVKFRCPAAGNPTPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 62

Query: 334 AGEYTCYAENIRGNASGEISLDL 356
            G YTC  EN  G+ +    LD+
Sbjct: 63  KGNYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 284 VYGDPEPTILWLLNGQVLHNSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAE 342
           V G+P+PT+ W  NG VL+ S +   E   E     E    +   N T ++ G YT  A 
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 343 NIRGNASGEIS 353
           N  G  S  IS
Sbjct: 67  NEYGQDSKSIS 77

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L+L++N +  L   +   +  L+L      +S       +    L  L  +DL+ N++
Sbjct: 50  LALNLSSNTLL-LLPSSLSRLLSLDLLSPSGISS---LDGSENLLNLLPLPSLDLNLNRL 105

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
                   L    L  L L+ N IT++          LK ++L   +I S+    L +L 
Sbjct: 106 RSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLP 163

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            L++L+L+ N L  L + +     NL  L L GN
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGN 196

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 153 PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
             L+T++L + QI  +    L +L  LE+L+L+GN++  LS 
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 279 TMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
           ++ C+  G P P + WL NG  +    S  L     G  L   +V          D G Y
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYE-------DTGAY 54

Query: 338 TCYAENIRG 346
           TC A+N  G
Sbjct: 55  TCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 284 VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD---LDAGEYTCY 340
           + G P PT+ W  +G+ L         +  G    E + S T   + +    D+G+YT  
Sbjct: 8   ISGRPTPTVTWSKDGKPL---------KLSGRVQIETTASSTSLVIKNAERSDSGKYTLT 58

Query: 341 AENIRGNASGEISLD 355
            +N  G  S  I++ 
Sbjct: 59  LKNPAGEKSATINVK 73

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--SSFDLLEEEEGDALF 318
           P +T  E+    E    +T++C   GDP P I W    +       S D      G A  
Sbjct: 3   PKITYLENQTAVE-LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA-- 59

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
            +  S+TL +V   DAG Y C A N  G     + L++
Sbjct: 60  -RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
            L+ L L+ N IT+L       LP L+T++L   +I  +
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL-DA 334
           G V+++C   G P PT  WL+NG  +        E +   +L   ++ I+  N +   DA
Sbjct: 20  GKVSLNCRARGSPPPTYRWLMNGTEID------DEPDSRYSLVGGNLVIS--NPSKAKDA 71

Query: 335 GEYTCYAENIRG 346
           G Y C A NI G
Sbjct: 72  GRYQCLASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	610
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		99.97
KOG3513|consensus	1051		99.89
KOG3513|consensus	1051		99.74
KOG4237|consensus	498		99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.65
KOG4222|consensus	1281		99.65
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.62
KOG4221|consensus	1381		99.61
KOG4221|consensus	1381		99.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.55
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.54
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.54
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.54
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.53
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.53
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.53
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.52
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.52
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.52
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.52
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.51
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.51
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.51
PHA02785	326	IL-beta-binding protein; Provisional	99.51
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.5
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.5
PHA02785	326	IL-beta-binding protein; Provisional	99.48
KOG0444|consensus	1255		99.48
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.48
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.47
KOG4222|consensus	1281		99.47
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.47
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.46
KOG0617|consensus	264		99.46
PHA02826	227	IL-1 receptor-like protein; Provisional	99.46
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.46
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.46
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.45
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.45
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.44
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.44
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.43
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.43
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.42
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.41
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.41
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.41
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.4
KOG0444|consensus	1255		99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.39
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.39
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.39
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.39
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.39
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.38
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.38
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.38
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.38
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.38
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.38
KOG0618|consensus	1081		99.37
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.37
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.37
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.37
KOG0617|consensus	264		99.37
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.36
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.36
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.36
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.35
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.35
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.35
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.35
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.35
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.35
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
KOG0472|consensus	565		99.32
KOG0472|consensus	565		99.31
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.29
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.27
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.27
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.25
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.25
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.24
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.24
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.22
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.22
KOG0618|consensus	1081		99.21
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.2
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.19
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.19
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.15
KOG1259|consensus	490		99.15
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.13
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.11
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.09
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.07
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.04
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.02
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.01
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.97
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.96
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.93
PHA02826	227	IL-1 receptor-like protein; Provisional	98.9
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.9
KOG1259|consensus	490		98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.88
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.86
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
KOG0532|consensus	722		98.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.8
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.78
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.76
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.76
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.76
smart00409	86	IG Immunoglobulin.	98.76
PLN03150	623	hypothetical protein; Provisional	98.76
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.75
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.7
KOG0532|consensus	722		98.69
PLN03150	623	hypothetical protein; Provisional	98.68
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
KOG1859|consensus	1096		98.59
KOG3207|consensus	505		98.56
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.54
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.52
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.52
KOG3207|consensus	505		98.49
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.49
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.42
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.41
KOG1644|consensus	233		98.39
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.38
KOG0531|consensus	414		98.37
KOG1859|consensus	1096		98.37
KOG0531|consensus	414		98.37
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.35
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.35
KOG4579|consensus	177		98.33
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.32
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.31
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.31
KOG1909|consensus	382		98.31
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.29
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.29
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.28
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.28
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.27
KOG1644|consensus	233		98.26
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.25
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.25
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.25
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.23
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.22
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.21
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.21
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.2
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.19
KOG4579|consensus	177		98.18
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.17
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.17
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.17
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.15
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.14
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.14
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.13
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.12
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.12
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.12
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.1
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.09
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.09
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.07
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.07
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.05
KOG4658|consensus	889		98.05
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.04
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.02
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.0
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.0
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.0
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.99
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.99
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.99
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.99
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	97.98
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.98
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.98
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	97.97
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.97
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.96
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.96
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.96
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.95
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	97.95
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	97.95
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.93
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.93
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.92
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.92
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.92
smart00407	75	IGc1 Immunoglobulin C-Type.	97.92
KOG1909|consensus	382		97.91
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.9
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.9
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.9
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.89
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	97.88
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.88
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.87
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.86
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.86
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.86
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.84
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.83
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.82
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.82
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.82
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.79
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.78
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.77
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	97.77
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.75
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.75
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.73
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.71
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.7
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.68
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.68
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.67
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.65
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.65
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.65
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.63
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.63
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.63
KOG3515|consensus	741		97.62
KOG4658|consensus	889		97.61
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.61
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.61
KOG2982|consensus	418		97.6
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.6
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.57
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.56
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.56
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.55
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.53
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.51
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.5
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.5
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.48
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.47
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.46
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.45
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.4
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.39
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.39
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.39
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.38
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.37
KOG3515|consensus	741		97.36
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.34
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.34
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.33
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.32
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.31
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.3
PRK15386	426	type III secretion protein GogB; Provisional	97.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.27
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.26
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.24
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.22
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.22
KOG3665|consensus	699		97.22
KOG2982|consensus	418		97.22
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.2
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.19
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.19
KOG2123|consensus	388		97.18
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.18
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.15
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.14
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.13
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	97.13
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.11
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.11
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.1
KOG2739|consensus	260		97.1
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.08
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	97.08
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.05
KOG3665|consensus	699		96.94
PRK15386	426	type III secretion protein GogB; Provisional	96.92
KOG2120|consensus	419		96.92
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.91
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	96.86
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	96.82
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.81
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.76
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.75
KOG2739|consensus	260		96.73
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.73
KOG2123|consensus	388		96.7
PHA03376	221	BARF1; Provisional	96.65
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.65
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.56
smart00406	81	IGv Immunoglobulin V-Type.	96.52
KOG1026|consensus	774		96.49
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.43
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.41
KOG2120|consensus	419		96.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.32
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.2
PHA02633	63	hypothetical protein; Provisional	96.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	96.13
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	96.03
KOG4597|consensus	560		95.88
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	95.87
PHA02633	63	hypothetical protein; Provisional	95.8
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.79
smart00408	63	IGc2 Immunoglobulin C-2 Type.	95.76
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	95.69
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	95.56
PHA03376	221	BARF1; Provisional	95.54
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	95.51
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	95.51
KOG1480|consensus	909		95.31
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	95.3
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	95.3
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.12
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	95.11
PF00047	64	ig: Immunoglobulin domain The Prosite family only	95.08
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	94.92
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.85
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	94.68
smart00409	86	IG Immunoglobulin.	94.65
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	94.65
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	94.56
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	94.56
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	94.54
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	94.49
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	94.42
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	94.3
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.26
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	93.73
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	93.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.43
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.38
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.36
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	93.3
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	93.02
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	93.02
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	92.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.71
smart00370	26	LRR Leucine-rich repeats, outliers.	92.71
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	92.66
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	92.45
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	92.4
PHA03042	286	CD47-like protein; Provisional	92.22
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	92.17
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	92.1
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.08
smart00370	26	LRR Leucine-rich repeats, outliers.	91.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.27
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	91.24
KOG3864|consensus	221		90.88
PHA02865	338	MHC-like TNF binding protein; Provisional	90.7
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	90.45
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	90.3
KOG0473|consensus	326		88.92
KOG0473|consensus	326		88.32
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	88.05
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	87.51
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	87.26
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	87.06
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	86.98
KOG3864|consensus	221		86.51
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	86.32
PHA02982	251	hypothetical protein; Provisional	86.24
KOG1480|consensus	909		85.73
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	84.65
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	84.46
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	83.3
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	83.01
PHA03270	466	envelope glycoprotein C; Provisional	82.06

>KOG4194|consensus

Probab=100.00  E-value=5.7e-48  Score=390.48  Aligned_cols=332  Identities=22%  Similarity=0.347  Sum_probs=228.8

Q ss_pred             CCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc
Q psy10487        151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK  230 (610)
Q Consensus       151 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~  230 (610)
                      .|++|+.|+|.+|+|+.|...+|..+..|++|||.+|.|.++.+++|.++ +|++|.+..-.|-|||++.|+..|+...+
T Consensus       390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRK  468 (873)
T ss_pred             cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence            34444444444444444444444455555555555555555555555544 45555555555799999999999999888


Q ss_pred             CCCC-CCCCCCCCccCCCcccccccccccC----CCceeeeecceEeecCceEEEEEEEEe--cCCCeEEEEeCCEEecc
Q psy10487        231 LYSH-PLSCTEPGMLQTKHWDDVKAQEFAC----PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~-~~~C~a~~~l~g~~~~~v~~~~~~c----~P~i~~~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g~~l~~  303 (610)
                      ++.. ...|..|..+.+..+..+...++.|    +|.|...|..+.+..|++++|+|.|.+  .-+-++.|.++......
T Consensus       469 lq~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~r  548 (873)
T KOG4194|consen  469 LQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPR  548 (873)
T ss_pred             cccceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcc
Confidence            7643 4589999999999999999999998    488999999999999999999999987  55668999997663221


Q ss_pred             ---CCcc----ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeeh
Q psy10487        304 ---SSFD----LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLV  375 (610)
Q Consensus       304 ---~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~  375 (610)
                         .++.    +...+..+....+.+.|.+.+|+..|+|.|+|++.|..|+. +..+.|+|   ...|.+.+.|....+.
T Consensus       549 v~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV---~~~PsFtktP~dltl~  625 (873)
T KOG4194|consen  549 VDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV---NQAPSFTKTPEDLTLR  625 (873)
T ss_pred             cchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEe---eccCccccCcccceee
Confidence               1110    11111112223556799999999999999999999999986 55888988   6778999999999988


Q ss_pred             hhhHHHHHHHHHhheeEEEEEEeeecc-cccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        376 LGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      .+..+-+.|.+.+-+-+.+.|.+.+.+ .+.     -...++.+..++..+.|.+|+.+|+|.|+|.|.|.+|+.+..+.
T Consensus       626 tg~mArl~CaAtG~P~PeIawqkdggtdFPA-----A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt  700 (873)
T KOG4194|consen  626 TGQMARLECAATGHPRPEIAWQKDGGTDFPA-----ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT  700 (873)
T ss_pred             cccceeeeeeccCCCCcceeehhcCCCCCch-----hhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceE
Confidence            877776544444444333333333222 000     01122344566677999999999999999999999999999999


Q ss_pred             cccccCCCcceeEecC---CCCCc-----ccccCCCc--ccccCCCC
Q psy10487        455 SLAMEQPPVHITIESH---AVDPQ-----VSVFPPPP--EFSSNHLP  491 (610)
Q Consensus       455 l~v~~~pp~~i~ie~~---~~~~l-----~~~~P~pp--ef~~~~~p  491 (610)
                      |+|.|.|...+-.|..   .++++     +++.|+-|  +|...--|
T Consensus       701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~p  747 (873)
T KOG4194|consen  701 LTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKP  747 (873)
T ss_pred             EEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCc
Confidence            9999986544332221   12333     77777744  88865433

>KOG4194|consensus

Probab=100.00  E-value=2.1e-36  Score=306.72  Aligned_cols=386  Identities=22%  Similarity=0.327  Sum_probs=283.1

Q ss_pred             CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCC---cccccCCCC
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH---QDTFLGNDR  130 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~---~~~f~~l~~  130 (610)
                      -..|++|+|++|+|+.++++.|.  .|..|+.|+|++|+|..+..++|.++.+|++|||++|.|+...   ...|.+|++
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             cccceeEeccccccccCChhHHH--HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            35799999999999999999998  7899999999999999999999999999999999999987543   456899999


Q ss_pred             CcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc------ccccccCcccc-------
Q psy10487        131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG------NRLKHLSESVF-------  197 (610)
Q Consensus       131 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~-------  197 (610)
                      |+.|.|.+|++..+...+|.++..|++|+|.+|.|..|.+++|..+ +|+.|.+..      +++..+.+...       
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~s  472 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSS  472 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccc
Confidence            9999999999999999999999999999999999999999999887 787776543      33332211000       


Q ss_pred             --------cCCCcccEEecCCCcccccC-------------------------------------------------Cch
Q psy10487        198 --------FPTPNLKTLSLDGNPWCCDC-------------------------------------------------HLR  220 (610)
Q Consensus       198 --------~~~~~L~~l~l~~N~~~c~c-------------------------------------------------~l~  220 (610)
                              ..+.....+.++.-.+.|+-                                                 ...
T Consensus       473 v~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ve  552 (873)
T KOG4194|consen  473 VIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVE  552 (873)
T ss_pred             eeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchh
Confidence                    01111112222222233321                                                 111


Q ss_pred             hhHHHHhhc---------------------cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEE
Q psy10487        221 SFRNWLLKS---------------------KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVT  279 (610)
Q Consensus       221 ~~~~~l~~~---------------------~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~  279 (610)
                      +|..+....                     --+.+.|+|+..|.++....+.+.... .-.|.+...|.+.+...|+.+.
T Consensus       553 d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV-~~~PsFtktP~dltl~tg~mAr  631 (873)
T KOG4194|consen  553 DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV-NQAPSFTKTPEDLTLRTGQMAR  631 (873)
T ss_pred             cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEe-eccCccccCcccceeeccccee
Confidence            122211111                     024568999999988887777666543 3569999999999999999999


Q ss_pred             EEEEEEecCCCeEEEEeCCEE-eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        280 MSCYVYGDPEPTILWLLNGQV-LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       280 l~C~~~g~P~p~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |.|.|.|.|.|+|.|.|+|.. +.....++...-.++      ....|.||+.+|.|.|+|.|.|.+|..++.++|.|.+
T Consensus       632 l~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped------d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e  705 (873)
T KOG4194|consen  632 LECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED------DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE  705 (873)
T ss_pred             eeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC------CEEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence            999999999999999998765 554433333222221      2788999999999999999999999999999999954


Q ss_pred             cccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccc------ccccccceeeeeeee
Q psy10487        359 INLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS------FNDQEKKLLDVSITT  432 (610)
Q Consensus       359 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~i~~v~~  432 (610)
                      .   |.+..+-+...+..+..            ....|.....+...+..|.+....+.      +.+.+.-|.+.+...
T Consensus       706 ~---p~f~~PL~~~~V~~get------------~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~  770 (873)
T KOG4194|consen  706 T---PSFSIPLEDQLVVVGET------------LVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLV  770 (873)
T ss_pred             C---CcccccccceEEEecce------------EEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhh
Confidence            3   33333333333333222            24456665555544466666666553      335666788888889


Q ss_pred             ccCcceeeeecCCCcceeeeeecccccCCCcc
Q psy10487        433 TDRHTGSCEALGSQPDMELIEQSLAMEQPPVH  464 (610)
Q Consensus       433 ~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~  464 (610)
                      +|+|.|+|+..|..|.......+.++.++--+
T Consensus       771 ~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~  802 (873)
T KOG4194|consen  771 EDAGIYTCEMSNTLGTERIHICLLVYQKKKCR  802 (873)
T ss_pred             hhcceEEEEEEeeccceeeEEEEEEeecCCcc
Confidence            99999999999999988777777776554333

>KOG4237|consensus

Probab=99.97  E-value=4.4e-32  Score=264.37  Aligned_cols=235  Identities=28%  Similarity=0.476  Sum_probs=205.0

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      ..||..|+|.... ...|+|++++|+++|..+|.+...|+|..|.|+.|++++|+  .+.+|+.|+|++|+|..|.+++|
T Consensus        35 ~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~AF  111 (498)
T KOG4237|consen   35 SACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPDAF  111 (498)
T ss_pred             ccCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhcc--chhhhceecccccchhhcChHhh
Confidence            4799999999765 58899999999999999999999999999999999999999  79999999999999999999999


Q ss_pred             cCCCCCcEEEccC-CCCCCCCccc--------------------------------------------------------
Q psy10487        102 KYLTILVEVDLSD-NQIAWLHQDT--------------------------------------------------------  124 (610)
Q Consensus       102 ~~l~~L~~LdLs~-n~l~~l~~~~--------------------------------------------------------  124 (610)
                      .++++|.+|-+-+ |+|++++.+.                                                        
T Consensus       112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~  191 (498)
T KOG4237|consen  112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIK  191 (498)
T ss_pred             hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccc
Confidence            9999987775544 8888765322                                                        


Q ss_pred             ------------------------------------------------------------------------------cc
Q psy10487        125 ------------------------------------------------------------------------------FL  126 (610)
Q Consensus       125 ------------------------------------------------------------------------------f~  126 (610)
                                                                                                    |.
T Consensus       192 tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~  271 (498)
T KOG4237|consen  192 TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK  271 (498)
T ss_pred             hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh
Confidence                                                                                          45


Q ss_pred             CCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEE
Q psy10487        127 GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTL  206 (610)
Q Consensus       127 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  206 (610)
                      ++++|+.|+|++|.|+.+...+|.++.+|+.|.|..|+|..+....|.++..|+.|+|.+|+|+.+.+..|..+..|.+|
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            56667777777777777777777777777777777777777777778888889999999999999999999999999999


Q ss_pred             ecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487        207 SLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP  260 (610)
Q Consensus       207 ~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~  260 (610)
                      .+-+|+|.|+|++.|+..|+..+. ..+...|..|..+++..+.++...+|.|.
T Consensus       352 ~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~  404 (498)
T KOG4237|consen  352 NLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCG  404 (498)
T ss_pred             ehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhccccccccC
Confidence            999999999999999999999888 78889999999999999999999999886

>KOG3513|consensus

Probab=99.89  E-value=4.8e-23  Score=226.24  Aligned_cols=209  Identities=19%  Similarity=0.225  Sum_probs=157.1

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.|..+ . ........+..+|.+...+.+..+..|++++|.|.+.|.|.|+|+|++||.++....+....
T Consensus       304 ~D~G~Y~C~AeN~~G-~-~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~  381 (1051)
T KOG3513|consen  304 EDAGEYECIAENSRG-S-ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRY  381 (1051)
T ss_pred             CCCeEEEEEEecccc-c-ceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcce
Confidence            477899999998887 2 23333345678999999999999999999999999999999999999999999866543222


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG  390 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (610)
                      .       ...+.|+|.+++.+|+|.|+|.|+|.+|...+.+.|.|.  ..+|.+...+....+.......         
T Consensus       382 ~-------i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~--a~~P~f~~~p~~~~~~a~~g~~---------  443 (1051)
T KOG3513|consen  382 K-------IDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL--ASAPVFPLNPVERKVMAVVGGT---------  443 (1051)
T ss_pred             E-------EeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE--ccCCCCCCCccceEEEEEeCCe---------
Confidence            1       334599999999999999999999999999999999994  4556666665544322211111         


Q ss_pred             eEEEEEEee--ecccccccccCC--ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        391 MSFCVCRAH--EHKNKRRKRKGK--MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       391 ~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                       +.+.|.-+  +++...|.+...  ..........+++|.|.+++.+|+|.|+|.|.|..|+++.+++|.|.+.
T Consensus       444 -v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~  516 (1051)
T KOG3513|consen  444 -VTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA  516 (1051)
T ss_pred             -EEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecC
Confidence             13334333  333434443332  1222233467889999999999999999999999999999999999884

>KOG3513|consensus

Probab=99.74  E-value=2.4e-17  Score=181.75  Aligned_cols=178  Identities=19%  Similarity=0.271  Sum_probs=131.5

Q ss_pred             CCCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+|.+... +.......|+.+.|.|.|.|+|.|+|.|.|.+.......   ....      .....|.|.+++.+|+|.|
T Consensus       239 ~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r---~~~~------~~~~vL~I~nv~~~D~G~Y  309 (1051)
T KOG3513|consen  239 YAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR---ATYS------NYGKVLKIPNVQYEDAGEY  309 (1051)
T ss_pred             cCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc---eeee------ccccEEEecccCcCCCeEE
Confidence            35766654 457778899999999999999999999999776422211   1111      2235899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee--ecccccccccCCcccc
Q psy10487        338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH--EHKNKRRKRKGKMKQS  415 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  415 (610)
                      +|.|+|..|...+.+.+.|   ..+|...+.++...+..+..+            .+.|+..  +++..+|.+.   ..+
T Consensus       310 ~C~AeN~~G~~~~~~~v~v---~a~P~w~~~~~d~~~~~gs~v------------~~eC~a~g~P~p~v~WlkN---g~p  371 (1051)
T KOG3513|consen  310 ECIAENSRGSATHSGHVTV---YAPPYWLQKPQDTEADTGSNV------------TLECKASGKPNPTVKWLKN---GEP  371 (1051)
T ss_pred             EEEEecccccceeeEEEEE---ecCchhhcccceeEecCCCCe------------EEEEEecCCCCCceEEeeC---Cee
Confidence            9999999999999999998   555666666665555444432            3445444  4444444443   333


Q ss_pred             cc-------ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCc
Q psy10487        416 VS-------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPV  463 (610)
Q Consensus       416 ~~-------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~  463 (610)
                      +.       ..-+.+.|+|.+++..|+|.|.|.|+|..|..-..+.|.|+..+|.
T Consensus       372 l~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~  426 (1051)
T KOG3513|consen  372 LEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV  426 (1051)
T ss_pred             cCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence            32       3356779999999999999999999999999999999998866444

>KOG4237|consensus

Probab=99.70  E-value=7.8e-19  Score=172.20  Aligned_cols=197  Identities=29%  Similarity=0.454  Sum_probs=176.7

Q ss_pred             EEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeC
Q psy10487         59 VLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG  138 (610)
Q Consensus        59 ~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~  138 (610)
                      .++-++-.+++++.+.=     .+-..|+|..|+|+.|++++|+.+++|+.|||++|+|+.|.+++|.++.+|..|-+.+
T Consensus        50 ~VdCr~~GL~eVP~~LP-----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP-----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcccCcccCC-----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            35667777777775432     2567899999999999999999999999999999999999999999999999888887


Q ss_pred             -ccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccC
Q psy10487        139 -NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       139 -N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                       |+|+.++.+.|.+|..|+.|.+.-|++..+..+.|..+++|..|.+-.|.++.+....|..+..++.+.+..|++.|+|
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487        218 HLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP  260 (610)
Q Consensus       218 ~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~  260 (610)
                      .+.|+.+.+.......+...|..+..+..+++..+....|.|.
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            9999999888888888888998887777777777766666554

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.65  E-value=9.4e-16  Score=127.81  Aligned_cols=97  Identities=21%  Similarity=0.255  Sum_probs=81.4

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.|...+..+.+..|+.+.|.|.+.|.|+|++.|+|+|..+....+......      ...+.|.|.++..+|+|.|+|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~------~~~s~L~I~~~~~~D~G~Ytc~   74 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENT------ENSSKLTITEGQQEHCGCYTLE   74 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEec------CCeeEEEECCCChhhCEEEEEE
Confidence            5677788899999999999999999999999999999999975543222211      1235899999999999999999


Q ss_pred             eecCCcceeEEEEEEcCcccccc
Q psy10487        341 AENIRGNASGEISLDLPEINLAT  363 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V~~~~~~p  363 (610)
                      |.|..|.+.+++.|.|.+.+.+|
T Consensus        75 a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          75 VENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EEcCCCceeEEEEEEEecCCCCC
Confidence            99999999999999997765554

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG4222|consensus

Probab=99.65  E-value=2.7e-16  Score=171.56  Aligned_cols=210  Identities=20%  Similarity=0.245  Sum_probs=150.7

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCcccee
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      +.+.|.|.+.+.++..-..........-+-.+.+.+..+.+..|+.++|.|.- .|.|.|.++|.|+|+++........ 
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~-  181 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPII-  181 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeE-
Confidence            78899999998887554444443333334566677788889999999999975 7999999999999999873322111 


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI  389 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (610)
                            .....|.|.|.+|..+|+|.|.|+|.|.+|.. +..+.|.|   ...|.+.+.+....+..+..+.+       
T Consensus       182 ------~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv---~e~P~f~~rp~~~~v~~g~~~~f-------  245 (1281)
T KOG4222|consen  182 ------ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSV---QEKPWFWKRPKDLAVLVGAAAEF-------  245 (1281)
T ss_pred             ------EEecCCcEEEeccccCCCceeeeeecccccccccccceeee---ccCCccccccccceeeccccccc-------
Confidence                  12344699999999999999999999999986 45788888   44567777777666555444332       


Q ss_pred             eeEEEEEEeeecccccccccC--CccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        390 GMSFCVCRAHEHKNKRRKRKG--KMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                         -|....++.+..+|++..  ....+.....++.+|.|.+++..|+|+|.|.|.|..|..+..+.++|...|
T Consensus       246 ---~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP  316 (1281)
T KOG4222|consen  246 ---DCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPP  316 (1281)
T ss_pred             ---ccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCc
Confidence               222223333333333311  112223344566889999999999999999999999999999999987644

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.62  E-value=2.7e-15  Score=122.58  Aligned_cols=87  Identities=26%  Similarity=0.531  Sum_probs=74.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.|...+.+..+.+|+.+.|.|.+.|+|.|.++|+|++..+....+  ..        ...+.|.|.+++.+|+|.|+|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~--------~~~~~L~I~~v~~~D~G~Y~C   70 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--IS--------MSGAVLKIFNIQPEDEGTYEC   70 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--Ee--------cCCCEEEECcCChhhCEEEEE
Confidence            57888899999999999999999999999999999999877654321  11        122489999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|..|.+.+.+.|.|
T Consensus        71 ~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          71 EAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEcCCCceEEEEEEEE
Confidence            99999999999999887

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4221|consensus

Probab=99.61  E-value=8.4e-16  Score=168.71  Aligned_cols=206  Identities=18%  Similarity=0.240  Sum_probs=139.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccC-----CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFAC-----PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c-----~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~  305 (610)
                      -+.+.|.|.+.+.......++.......-     .-.|...|+...+.+|+.++|.|.+.|.|+|.|.|.+||..+..++
T Consensus       203 ~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds  282 (1381)
T KOG4221|consen  203 SDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS  282 (1381)
T ss_pred             CCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc
Confidence            36778999887665544444333332211     1224567788999999999999999999999999999999987765


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHH
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSV  385 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  385 (610)
                      .. ...       ...+.|.|.+++..|+|.|+|+|.|......+.+.|.|.   .+|.+...+...........     
T Consensus       283 ~r-ivl-------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---a~P~~~~~p~~l~A~e~~di-----  346 (1381)
T KOG4221|consen  283 YR-IVL-------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---APPGFTKAPTTLVAHESMDI-----  346 (1381)
T ss_pred             eE-EEE-------ecccceEEeccccccCceEEEEecCCCcccccceEEEEE---cCCCCCCCCcceeeeeccce-----
Confidence            22 111       224589999999999999999999955555555556552   34667777666554442221     


Q ss_pred             HHhheeEEEEEEe--eecccccccccCCccc-cccc-cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        386 IVSIGMSFCVCRA--HEHKNKRRKRKGKMKQ-SVSF-NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       386 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~-~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                             .+.|..  ++.+..+|.+.+..-. +-.+ ...++.|+|..+-..|+|-|.|+|.|.+|.+...+++.++.
T Consensus       347 -------e~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~  417 (1381)
T KOG4221|consen  347 -------EFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP  417 (1381)
T ss_pred             -------eEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence                   334433  3333333433322111 1111 12333499999999999999999999999999999997663

>KOG4221|consensus

Probab=99.56  E-value=8.3e-15  Score=161.03  Aligned_cols=214  Identities=19%  Similarity=0.205  Sum_probs=143.2

Q ss_pred             ccCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        229 SKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       229 ~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      ++.+.+.|+|.+...-.+.-+.......+.-.+.+...+...++..|+++.|.|.+.+.|.|.+.|.+|..++..+.+ .
T Consensus       109 ~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r-~  187 (1381)
T KOG4221|consen  109 NKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSR-V  187 (1381)
T ss_pred             ccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCc-E
Confidence            346778899988655333333333333344567777888899999999999999999999999999999997776652 2


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCccc---cccccccCCcceeehhhhHHHHHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEIN---LATTLSKTDSWYMLVLGISVCVVS  384 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~---~~p~~~~~~~~~~~~~~~~~~~~~  384 (610)
                      ..        ...|.|.|.+++..|.|.|.|.|++.+-.. +..+.|+|....   ..-.|...+.......+..+.+.|
T Consensus       188 i~--------lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  188 IV--------LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             EE--------cCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence            22        334699999999999999999999987543 557777774211   111234444444444444444333


Q ss_pred             HHHhheeEEEEEEeeecccccccccCCc---cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        385 VIVSIGMSFCVCRAHEHKNKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ++          ....++..+|.+.+..   +..+......+.|+|.+++..|+|.|+|.|+|......+++.+.|..+|
T Consensus       260 vv----------s~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P  329 (1381)
T KOG4221|consen  260 VV----------SGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPP  329 (1381)
T ss_pred             Ee----------cCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCC
Confidence            33          3334444444432211   1111122345679999999999999999999977777777888777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=1.7e-14  Score=170.62  Aligned_cols=174  Identities=20%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             cEEEcCCCCCC-ccCcccC---CCccEEEeecCCCC----------------------CCChhhhcccCCCCccEEEccc
Q psy10487         37 KSALCKDANFT-ALPSTLD---SDIQVLDLNNNKIS----------------------YLTKEAFKSIGLLNLQRIYLKN   90 (610)
Q Consensus        37 ~~~~C~~~~l~-~lP~~l~---~~L~~L~L~~n~i~----------------------~l~~~~~~~~~l~~L~~L~L~~   90 (610)
                      +.++..++++. .+|..+.   .+|++|+|++|+++                      ...+..+.  ++.+|++|+|++
T Consensus        96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~  173 (968)
T PLN00113         96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDLGG  173 (968)
T ss_pred             CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh--cCCCCCEEECcc
Confidence            45666666665 5665432   35566666655554                      22233333  455566666666


Q ss_pred             CCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCH
Q psy10487         91 SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK  170 (610)
Q Consensus        91 n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (610)
                      |.+....+..|.++++|++|+|++|++....+..|..+.+|+.|+|++|.+....+..|.++++|+.|+|++|++....+
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence            55555445555555555555555555554444455555555555555555554444444555555555555555544444


Q ss_pred             HHhhcCccccccccccccccccCcccccCCCcccEEecCCCc
Q psy10487        171 DALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP  212 (610)
Q Consensus       171 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~  212 (610)
                      ..|.++.+|+.|++++|.+.+..+..+..+.+|+.|++++|.
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            444455555555555554443333333334444444444443

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.55  E-value=2.9e-14  Score=112.18  Aligned_cols=75  Identities=28%  Similarity=0.436  Sum_probs=59.9

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +.|.|.+.|.|.|.|.|+|++..+.....+.....++.    ...+|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~----g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNS----GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCC----CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999998874332222212211    1137999999999999999999999999999999876

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=2.6e-14  Score=112.71  Aligned_cols=74  Identities=30%  Similarity=0.469  Sum_probs=63.2

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      +|+++.|.|.+.|+|.|.|+|+|++..+....+..         ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~---------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   71 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHL---------VLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQ   71 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeE---------EccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEE
Confidence            58999999999999999999999999876543211         122358999999999999999999999999999998


Q ss_pred             EEc
Q psy10487        354 LDL  356 (610)
Q Consensus       354 L~V  356 (610)
                      |.|
T Consensus        72 L~V   74 (74)
T cd05745          72 LTV   74 (74)
T ss_pred             EeC
Confidence            876

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.54  E-value=6e-14  Score=115.77  Aligned_cols=86  Identities=29%  Similarity=0.539  Sum_probs=70.8

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .|..+.+.+|+++.|.|.+.|.|.|++.|+|++..+....+.......+     ....|.|.+++.+|+|.|+|.|.|..
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG-----KYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCC-----CEEEEEEccCChhhCEEEEEEEEECC
Confidence            3556788999999999999999999999999999887654432222211     12479999999999999999999999


Q ss_pred             cceeEEEEEEc
Q psy10487        346 GNASGEISLDL  356 (610)
Q Consensus       346 G~~~~~~~L~V  356 (610)
                      |.++..+.|.|
T Consensus        82 G~~~~~~~v~v   92 (92)
T cd05737          82 GGETVDVTVSV   92 (92)
T ss_pred             CcceEEEEEeC
Confidence            99999988875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.54  E-value=8.1e-14  Score=113.14  Aligned_cols=83  Identities=18%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+............     ...+.|.|.++..+|+|.|+|.|.|..|.+
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            467889999999999999999999999999988754321111111     123589999999999999999999999999


Q ss_pred             eEEEEEEc
Q psy10487        349 SGEISLDL  356 (610)
Q Consensus       349 ~~~~~L~V  356 (610)
                      .+++.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            99998875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.53  E-value=6.3e-14  Score=115.69  Aligned_cols=89  Identities=27%  Similarity=0.506  Sum_probs=74.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....+......      ...+.|.|.+++.+|+|.|+|
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~------~~~~~L~i~~~~~~D~G~Y~C   76 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST------EYKSTFEISKVQMSDEGNYTV   76 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc------CCeeEEEECCCCcccCEeEEE
Confidence            67888888999999999999999999999999999999988765443222111      123689999999999999999


Q ss_pred             EeecCCcceeEEEEE
Q psy10487        340 YAENIRGNASGEISL  354 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L  354 (610)
                      .|.|..|.++.++.|
T Consensus        77 ~a~N~~G~~~~~~~l   91 (92)
T cd05747          77 VVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEcCCCCEeEEEEe
Confidence            999999999888876

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.53  E-value=6.1e-14  Score=116.10  Aligned_cols=90  Identities=24%  Similarity=0.406  Sum_probs=70.0

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCC-CeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPE-PTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      +...|....+.+|+.++|.|.+.|.|. |.+.|++ ++..+.............    ...++|+|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~----~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRND----DYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCC----CCceEEEEeccChhhCEEEEEE
Confidence            455677778999999999999999995 7999998 776665433211111111    1246899999999999999999


Q ss_pred             eecCC-cceeEEEEEEc
Q psy10487        341 AENIR-GNASGEISLDL  356 (610)
Q Consensus       341 a~N~~-G~~~~~~~L~V  356 (610)
                      |.|.+ |..++++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99997 88999998876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.53  E-value=7.4e-14  Score=113.99  Aligned_cols=87  Identities=21%  Similarity=0.306  Sum_probs=67.8

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.++|.|.+.|.|+|.+.|++++..+.....++.......+ ....+.|.|.++..+|+|.|+|.|.|..|..++++.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~-~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVG-DEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCC-CcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            788999999999999999999999887654322221111100 1234689999999999999999999999999999999


Q ss_pred             EcCccccc
Q psy10487        355 DLPEINLA  362 (610)
Q Consensus       355 ~V~~~~~~  362 (610)
                      .|.+.+.+
T Consensus        80 ~V~~~P~~   87 (88)
T cd05735          80 TVQEPPDP   87 (88)
T ss_pred             EEeCCCCC
Confidence            99665443

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.52  E-value=9.7e-14  Score=115.89  Aligned_cols=88  Identities=22%  Similarity=0.390  Sum_probs=70.6

Q ss_pred             cceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+.+|+++.|.|.+.| .|+|.+.|+|||.++............ .......+.|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSEN-ESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEec-cCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4677889999999999999 899999999999998754322111111 00113457899999999999999999999999


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .++.++.|.|
T Consensus        90 ~~~~t~~L~V   99 (101)
T cd04975          90 SKSLTFELYV   99 (101)
T ss_pred             cEEEEEEEEE
Confidence            9999999887

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.52  E-value=8e-14  Score=113.15  Aligned_cols=83  Identities=27%  Similarity=0.416  Sum_probs=70.9

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.  .        ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~--~--------~~~~~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRI--E--------VEAGDLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeE--E--------EeCCEEEEeeCCHHHCEEEEEEEEC
Confidence            44677888999999999999999999999999999987654321  1        2235899999999999999999999


Q ss_pred             CCcceeEEEEEEc
Q psy10487        344 IRGNASGEISLDL  356 (610)
Q Consensus       344 ~~G~~~~~~~L~V  356 (610)
                      ..|...+++.|.|
T Consensus        73 ~~G~~~~~~~l~V   85 (85)
T cd05728          73 KHGTIYASAELAV   85 (85)
T ss_pred             CCCeEEEEEEEEC
Confidence            9999999998875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.52  E-value=3.7e-14  Score=167.69  Aligned_cols=157  Identities=21%  Similarity=0.180  Sum_probs=115.6

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .+|++|+|++|.+....+..|.  ++.+|++|+|++|.+....+..|+.+.+|++|+|++|++....+..|.++++|++|
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCcccccCChhhh--hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            4788888888888766666666  67888888888888877777778888888888888888877666777778888888


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      +|++|.+....+..|.++++|+.|+|++|++....+..+.++.+|+.|++++|.+....+..+..+++|+.|++.+|.+
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            8888877766666677777777777777777665566666677777777777766655555555556666666665554

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.52  E-value=1e-13  Score=113.42  Aligned_cols=87  Identities=25%  Similarity=0.433  Sum_probs=72.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......  .        ...+.|.|.+++.+|+|.|+|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~--------~~~~~L~i~~v~~~D~G~Y~C   70 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--S--------MSGAVLKIPNIQFEDEGTYEC   70 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE--E--------EeCCEEEECCCCcccCEEEEE
Confidence            355666788888999999999999999999999999988765433211  0        223589999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|..|....++.|.|
T Consensus        71 ~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          71 EAENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEEECCCcEEEEEEEEE
Confidence            99999999999998877

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=1.6e-13  Score=114.54  Aligned_cols=93  Identities=28%  Similarity=0.452  Sum_probs=72.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc---ceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD---LLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+......   .......    ...+.|.|.+++.+|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~----~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH----ARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC----ccEEEEEEecCccCcCEE
Confidence            467777776666777899999999999999999999998776533210   1111111    123689999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEc
Q psy10487        337 YTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|.|..|.++.++.|.|
T Consensus        78 Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCCeeEEEEEEC
Confidence            99999999999999998876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.52  E-value=6.4e-14  Score=110.34  Aligned_cols=75  Identities=28%  Similarity=0.423  Sum_probs=59.6

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.|.|+|++..+............+.    ....|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNC----GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999999999999998865432222211111    1126999999999999999999999999999999876

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.51  E-value=5.6e-14  Score=110.11  Aligned_cols=73  Identities=36%  Similarity=0.589  Sum_probs=61.7

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.+.|.|.+.|.|.|+|.|+|++..+....+. ..        ...+.|.|.+++.+|+|.|+|.|.|..|.+..++.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~-~~--------~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRI-SI--------WDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVL   71 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCE-EE--------cCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence            678999999999999999999999876544321 11        123589999999999999999999999999999998


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        72 ~~   73 (73)
T cd05852          72 SV   73 (73)
T ss_pred             EC
Confidence            75

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.51  E-value=9e-14  Score=110.13  Aligned_cols=75  Identities=25%  Similarity=0.451  Sum_probs=62.0

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.++|.|.+.|.|.|+|+|+++|.++..........       ...+.|.|.+++.+|+|.|+|.|.|.+|.+.+++.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   73 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFV   73 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence            6789999999999999999999999885432211111       122479999999999999999999999999999999


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        74 ~v   75 (76)
T cd05868          74 NV   75 (76)
T ss_pred             Ee
Confidence            87

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=1.3e-13  Score=109.44  Aligned_cols=75  Identities=28%  Similarity=0.483  Sum_probs=62.8

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.++|.|.+.|.|.|+++|+++|..+.........       ....+.|.|.+++.+|+|.|+|.|.|..|...+.+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~-------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRR-------HVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceE-------EeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            688999999999999999999999987654321111       1223589999999999999999999999999999998


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            87

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.51  E-value=8.4e-14  Score=142.46  Aligned_cols=205  Identities=16%  Similarity=0.151  Sum_probs=114.0

Q ss_pred             cCCCCCCCCCCCCccCCCccccccccccc-CCCceeeeecceEeecCceEEEEEE-----EEecCCCeEEEEeCCEEecc
Q psy10487        230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKESMVIREAGGNVTMSCY-----VYGDPEPTILWLLNGQVLHN  303 (610)
Q Consensus       230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~~~~v~~G~~v~l~C~-----~~g~P~p~v~W~~~g~~l~~  303 (610)
                      ..+.+.|+|.+.|..+.... .+....+. -+|.+...+....+.+|..+.|.|.     ..++|.|++.|+++.. +..
T Consensus        91 ~~DsG~Y~C~a~N~~g~~~~-s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~  168 (326)
T PHA02785         91 QSDSGIYICITKNETYCDMM-SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN  168 (326)
T ss_pred             cccCeEEEEEEECCCcceEE-EEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC
Confidence            35788999999877643332 12211111 1233333345556779999999997     3578999999988642 211


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE----EEEEEcCccccccccccCCcceeehhhhH
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG----EISLDLPEINLATTLSKTDSWYMLVLGIS  379 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~----~~~L~V~~~~~~p~~~~~~~~~~~~~~~~  379 (610)
                       .+  ..       ....+.|.|.+++.+|+|.|+|.|.|.+|....    .+.|.|.....+|.+. .+.......+..
T Consensus       169 -~r--~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~~~~~~G~~  237 (326)
T PHA02785        169 -KR--LK-------QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEGVVTSIGSN  237 (326)
T ss_pred             -cc--eE-------ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCcEEecCCCc
Confidence             11  00       112358999999999999999999999987543    4456564433343332 223333333333


Q ss_pred             HHHHHHHHhheeE--EEEEEeeecccccccccCCccccccc----------cccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        380 VCVVSVIVSIGMS--FCVCRAHEHKNKRRKRKGKMKQSVSF----------NDQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       380 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      +.+.|.+.+.+..  ..++|.+.+......... ....+..          ....+.|.|.+|+.+|+|.|+|.|.|..|
T Consensus       238 v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        238 LTIACRVSLRPPTTDADVFWISNGMYYEEDDED-GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             EEEEEEEECCCCCCCceEEEEECCEECCCcCCC-CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence            3333333322211  112222211111000000 0000000          01245799999999999999999999886


Q ss_pred             c
Q psy10487        448 D  448 (610)
Q Consensus       448 ~  448 (610)
                      .
T Consensus       317 ~  317 (326)
T PHA02785        317 I  317 (326)
T ss_pred             c
Confidence            4

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=1.3e-13  Score=115.38  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      ...+..|+.+.|.|.+.|.|+|.+.|+|+|.++....................+.|+|.+++.+|+|.|+|.|.|..|.+
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56778899999999999999999999999999876543211111100011334689999999999999999999999999


Q ss_pred             eEEEEEEc
Q psy10487        349 SGEISLDL  356 (610)
Q Consensus       349 ~~~~~L~V  356 (610)
                      +.++.|.|
T Consensus        92 ~~t~~l~V   99 (101)
T cd05859          92 SYTFALQI   99 (101)
T ss_pred             EEEEEEEE
Confidence            99999887

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.50  E-value=1.7e-13  Score=112.75  Aligned_cols=90  Identities=40%  Similarity=0.615  Sum_probs=78.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.|...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+....+.......      ....|.|.+++.+|+|.|+|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~   74 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG------GSSSLTIKNVTREDAGTYTCV   74 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET------TEEEEEESSESGGGSEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc------ceeEEccCCCChhhCEEEEEE
Confidence            56777889999999999999999999999999999999999886554433322      245899999999999999999


Q ss_pred             eecCCcceeEEEEEEc
Q psy10487        341 AENIRGNASGEISLDL  356 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V  356 (610)
                      |.|..|...+++.|.|
T Consensus        75 ~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   75 ASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEC
Confidence            9999999999998876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.50  E-value=1.3e-13  Score=114.55  Aligned_cols=90  Identities=32%  Similarity=0.602  Sum_probs=71.4

Q ss_pred             CCceeeee--cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKE--SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.|....  .+..+..|+.+.|.|.+.|.|.|.+.|+++|..+...........       ..+.|+|.+++.+|+|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE-------DGSEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC-------CCCEEEECCCChhhCEEE
Confidence            34454433  455788999999999999999999999999998765422111111       124799999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.|..|....++.|.|
T Consensus        74 ~C~a~N~~G~~~~~~~L~V   92 (95)
T cd05730          74 TCIAENKAGEQEAEIHLKV   92 (95)
T ss_pred             EEEEEcCCCeEEEEEEEEE
Confidence            9999999999999999987

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=2.3e-13  Score=111.81  Aligned_cols=85  Identities=26%  Similarity=0.452  Sum_probs=68.9

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.........  .    ....+.|.|.+++.+|.|.|+|.|.|..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~--~----~~~~~~L~I~~v~~~D~g~Y~C~A~N~~   79 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE--T----TVDIYNLQLSNITSETQTTVTCTAENPV   79 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE--e----cCCEEEEEEecCCcccCEEEEEEEECCC
Confidence            445666889999999999999999999999999887543321100  0    0223589999999999999999999999


Q ss_pred             cceeEEEEEEc
Q psy10487        346 GNASGEISLDL  356 (610)
Q Consensus       346 G~~~~~~~L~V  356 (610)
                      |.+.+++.|.|
T Consensus        80 G~~~~~~~L~v   90 (90)
T cd04972          80 GQANVSVQVTV   90 (90)
T ss_pred             CceeEEEEEeC
Confidence            99999998875

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.48  E-value=4.4e-13  Score=137.20  Aligned_cols=164  Identities=12%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             EeecCceEEEEEEE-----EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        271 IREAGGNVTMSCYV-----YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       271 ~v~~G~~v~l~C~~-----~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+.+|+.+.|.|.+     .|.|.|++.|+|+|....   + ....+++       ..|.|.++..+|+|.|+|+|.|..
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~-~~~~~~g-------~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R-IIPIDNG-------SNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e-EEEccCC-------ceEEEcccCcccCeEEEEEEECCC
Confidence            34569999999997     799999999999974311   1 1111111       258899999999999999999999


Q ss_pred             cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccce
Q psy10487        346 GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKL  425 (610)
Q Consensus       346 G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  425 (610)
                      |....++.|.|..... +.+...........+..+.+.|....     .+......+...|.+.............++.|
T Consensus       106 g~~~~s~~L~V~~~~~-~~~~~~~~~~~~~~g~~~~i~C~~~~-----~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L  179 (326)
T PHA02785        106 YCDMMSLNLTIVSVSE-SNIDLISYPQIVNERSTGEMVCPNIN-----AFIASNVNADIIWSGHRRLRNKRLKQRTPGII  179 (326)
T ss_pred             cceEEEEEEEEEecCC-CccceeeccceecccCcEEEECCChh-----hcccCCCCceEEEccCCccCCcceEecCCCeE
Confidence            9888888888743221 11111111111111111111111000     00001111122221111001111111234689


Q ss_pred             eeeeeeeccCcceeeeecCCCcceee
Q psy10487        426 LDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       426 ~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .|.+++.+|+|.|+|.|.|..|....
T Consensus       180 ~i~~v~~~d~G~Y~C~~~n~~g~~~~  205 (326)
T PHA02785        180 TIEDVRKNDAGYYTCVLKYIYGDKTY  205 (326)
T ss_pred             EEeecChhhCeEEEEEEEeccCCEEE
Confidence            99999999999999999999887543

>KOG0444|consensus

Probab=99.48  E-value=4.2e-15  Score=153.42  Aligned_cols=185  Identities=23%  Similarity=0.312  Sum_probs=83.5

Q ss_pred             EEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         38 SALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        38 ~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      .+|.+.++|+++|.++  .+++-+|+|++|+|..|+...|.  +|..|-+|+|++|.+..++|. .+.|..|++|+|++|
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCC
Confidence            3455555555555444  23555555555555555555554  455555555555555555443 344455555555555


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccc-cCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      .+....-..+-.+.+|+.|.+++.+-+- -.+..+..|.+|+.++|+.|++..+ |+.+-++.+|+.|+|++|+|+.+..
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec
Confidence            4332211111112222222222211100 0011223334444455555555444 3444455555555666665555543


Q ss_pred             ccccCCCcccEEecCCCcc----cccCCchhhHHHHh
Q psy10487        195 SVFFPTPNLKTLSLDGNPW----CCDCHLRSFRNWLL  227 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~----~c~c~l~~~~~~l~  227 (610)
                      . ...+.+|++|+++.|++    .|.|.+..+...+.
T Consensus       263 ~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  263 T-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             c-HHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence            2 23344555556665554    23455555544443

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.48  E-value=2.4e-13  Score=107.33  Aligned_cols=75  Identities=28%  Similarity=0.395  Sum_probs=59.6

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.|.|+|++..+............+.    ....|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNC----GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCC----CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999998875432222221211    1236999999999999999999999999999998875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=3.4e-13  Score=105.34  Aligned_cols=71  Identities=31%  Similarity=0.581  Sum_probs=59.4

Q ss_pred             eEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       277 ~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +++|.|.+.|.|.|.++|+|++..+....+.+.         ...+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~---------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKI---------VKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEE---------EecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999988765443211         22347899999999999999999999999999999875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>KOG4222|consensus

Probab=99.47  E-value=2.8e-14  Score=156.13  Aligned_cols=215  Identities=16%  Similarity=0.169  Sum_probs=153.8

Q ss_pred             ccCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        229 SKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       229 ~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.+.|.|++.|.++..........+ .-+|.+...+.+..+.+|..+.|.|++.|+|.|.|.|.+++..+.....  
T Consensus       195 rksD~GtY~CVatNmvG~ReS~~A~lsv-~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry--  271 (1281)
T KOG4222|consen  195 RKSDEGTYACVATNMVGERESIPARLSV-QEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRY--  271 (1281)
T ss_pred             ccCCCceeeeeecccccccccccceeee-ccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccce--
Confidence            3568899999999988776655444443 3789999999999999999999999999999999999997766654332  


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                      .+.++       .-+|.|.+++..|.|.|.|.|.|..|...+.+.++|   ..+|.+.+.+....+..+..+.+.|.+.+
T Consensus       272 ~i~~d-------~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV---~apP~f~kkp~dq~v~lg~~vt~pc~~~g  341 (1281)
T KOG4222|consen  272 SILDD-------TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTV---QAPPSFGKKPRDQKVALGGTVTFPCETLG  341 (1281)
T ss_pred             eeeec-------cccccccccCCCcccceeeeccccccccccccceEE---ecCcccccccCccccccCceEEeeeecCC
Confidence            22222       128999999999999999999999999999999988   44567777666666665556666666666


Q ss_pred             heeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        389 IGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+...++|.+.....-..................+.|.|.++...|.|.|.|.+.+++|+....+.+.
T Consensus       342 nP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~  409 (1281)
T KOG4222|consen  342 NPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLE  409 (1281)
T ss_pred             CCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEE
Confidence            66544444333222110000000111111223445899999999999999999999988766555554

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.47  E-value=2.7e-13  Score=107.10  Aligned_cols=77  Identities=27%  Similarity=0.393  Sum_probs=60.7

Q ss_pred             EEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        279 TMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       279 ~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .+.|.+.|+|.|+|+|+|||.++..+.+......... .....+.|+|.+++.+|+|.|+|+|+|..|.+++++.++.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f   78 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF   78 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence            4789999999999999999999986654322111100 1134578999999999999999999999999999988764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.47  E-value=1.8e-13  Score=104.71  Aligned_cols=65  Identities=28%  Similarity=0.443  Sum_probs=56.2

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.+.|+|||..+....              ..+.|.|.++..+|+|.|+|+|.|..|..++++.+.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC--------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            4799999999999999999999886321              1248999999999999999999999998888777765

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.46  E-value=3.2e-13  Score=107.16  Aligned_cols=75  Identities=28%  Similarity=0.428  Sum_probs=63.2

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.++|.|.+.|.|.|.|.|+++|..+.........       ....+.|.|.+++.+|+|.|+|.|.|..|...+.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   73 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR-------RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFV   73 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE-------EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEE
Confidence            688999999999999999999999988655432111       1223589999999999999999999999999999998


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        74 ~V   75 (76)
T cd04978          74 HV   75 (76)
T ss_pred             EE
Confidence            87

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>KOG0617|consensus

Probab=99.46  E-value=1.9e-15  Score=132.36  Aligned_cols=148  Identities=25%  Similarity=0.363  Sum_probs=80.9

Q ss_pred             cCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCC
Q psy10487         41 CKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA  118 (610)
Q Consensus        41 C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~  118 (610)
                      .+.++++.+|.++.  .+|+.|++.+|+|++++...-   .+++|+.|++.-|.+..++ ..|+.++.|+.|||+.|++.
T Consensus        40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is---sl~klr~lnvgmnrl~~lp-rgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS---SLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh---hchhhhheecchhhhhcCc-cccCCCchhhhhhccccccc
Confidence            34455555555543  255555555555555554332   3555555555555554443 23555555666666655553


Q ss_pred             C-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        119 W-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       119 ~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      . .-|..|..+..|+-|+|+.|.+..++++ .+++++|+.|.+..|.+-.+ |..++.+..|+.|.+++|+++-+++
T Consensus       116 e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecCh
Confidence            2 2234445555556666666655555442 55666666666666666555 3445566666666666666666655

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.46  E-value=7.7e-14  Score=134.10  Aligned_cols=158  Identities=15%  Similarity=0.207  Sum_probs=94.6

Q ss_pred             cceEeecCceEEEEEEEEecCC-----------CeEEEEeCCEEe--ccC-CccceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE-----------PTILWLLNGQVL--HNS-SFDLLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~-----------p~v~W~~~g~~l--~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      ..+.+.+|+++.|.|.+.+.|+           ++|.|+|++...  ... .+........+......+.|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            4567889999999999987654           489999987642  111 11000000000001124589999999999


Q ss_pred             CeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-------cccccc
Q psy10487        334 AGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-------HKNKRR  406 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  406 (610)
                      +|.|+|+|.|..|....++.|.|.....         ...+..+..+            .+.|....       .+...|
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~---------~~~~~~G~~v------------~L~C~~~~~~~~~~p~p~I~W  168 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGTI---------NYQFNSGKDS------------KLHCYGTDGISSTFKDYTLTW  168 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCCc---------cceEecCCCE------------EEEeeCCCCccccCCCceEEE
Confidence            9999999999999988888888832110         0111111111            22332211       122222


Q ss_pred             cccCCc---cccccccccccceeeeeeeeccCcceeeeecCCC
Q psy10487        407 KRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       407 ~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      .+....   ...+.....++.|.|.+++.+|+|.|+|+|+...
T Consensus       169 yKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        169 YKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            222111   1122222345689999999999999999999854

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.46  E-value=5.7e-13  Score=111.37  Aligned_cols=92  Identities=24%  Similarity=0.421  Sum_probs=69.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEeccCCc---cceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +|.+. .+.++.+.+|+.++|.|.+.|.|.|.|.|+++  +..+.....   .+......    ...+.|+|.+++.+|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~----~~~~~L~I~~v~~~D~   76 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ----HGESSLHIKDVKLSDS   76 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec----CCeeEEEEeeCCcCCC
Confidence            45554 46788999999999999999999999999994  444332110   11111110    1235899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEc
Q psy10487        335 GEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|+|.|.|..|.+..++.|.|
T Consensus        77 G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          77 GRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEEeccCCcceeEEEEeC
Confidence            9999999999999999998875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.46  E-value=5.6e-13  Score=111.05  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=71.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc---cceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   ........    ...+.|+|.+++.+|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~   76 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH----ARVSSLTLKDVQLTDAGR   76 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC----ccEEEEEECcCCcCcCEE
Confidence            46664 45678889999999999999999999999999866543221   01111111    123689999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEc
Q psy10487        337 YTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|.|..|.++.++.|.|
T Consensus        77 Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          77 YDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             eEEEEEeCCCCcEEEEEEeC
Confidence            99999999999999998875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.45  E-value=5.6e-13  Score=105.15  Aligned_cols=74  Identities=28%  Similarity=0.452  Sum_probs=60.9

Q ss_pred             eEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       277 ~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .+.|.|.+.|.|.|.+.|+++|..+....+......      ...+.|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT------ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC------CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            378999999999999999999998855443222211      12358999999999999999999999999999998875

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.45  E-value=7.2e-13  Score=111.18  Aligned_cols=94  Identities=31%  Similarity=0.465  Sum_probs=69.3

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC----ccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS----FDLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      +|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|+|+|..+....    .......++.   .....+.+..++.+|+|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS---LFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCc---EEEEEeeccCCCcCcCE
Confidence            5788888899999999999999999999999999999999886521    1111111221   00011222234789999


Q ss_pred             EEEEEeecCCcc-eeEEEEEEc
Q psy10487        336 EYTCYAENIRGN-ASGEISLDL  356 (610)
Q Consensus       336 ~Y~C~a~N~~G~-~~~~~~L~V  356 (610)
                      .|+|.|.|..|. .+..+.|.|
T Consensus        78 ~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          78 VYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEccccceecceEEEEe
Confidence            999999999999 667888776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.44  E-value=7.6e-13  Score=109.04  Aligned_cols=86  Identities=27%  Similarity=0.540  Sum_probs=70.4

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.......+     ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~   81 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQG-----KYASLTIKGVTSEDSGKYSINVKNKY   81 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCC-----CEEEEEECCCChhhCEEEEEEEEeCC
Confidence            3567789999999999999999999999999998876544322222222     12479999999999999999999999


Q ss_pred             cceeEEEEEEc
Q psy10487        346 GNASGEISLDL  356 (610)
Q Consensus       346 G~~~~~~~L~V  356 (610)
                      |.+..++.|.|
T Consensus        82 G~~~~~~~v~~   92 (92)
T cd05891          82 GGETVDVTVSV   92 (92)
T ss_pred             CceeeEEEEEC
Confidence            99999998875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.44  E-value=6.5e-13  Score=104.46  Aligned_cols=73  Identities=40%  Similarity=0.633  Sum_probs=62.1

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.+.|.|.+.|.|.|+++|++++..+....+.+.         ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI---------WPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE---------CCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            67899999999999999999999998765443211         122479999999999999999999999999999988


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        72 ~V   73 (73)
T cd04969          72 SV   73 (73)
T ss_pred             EC
Confidence            76

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.44  E-value=9.7e-13  Score=108.84  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             CceeeeecceEee---cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC-CCCCeE
Q psy10487        261 PNVTIKESMVIRE---AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDAGE  336 (610)
Q Consensus       261 P~i~~~~~~~~v~---~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~  336 (610)
                      |.+...|.++.+.   +|+.++|.|.+.|.|.|+|+|+|+|..+.........        ...+.|.|.++. .+|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~--------~~~g~L~i~~~~~~~D~G~   73 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS--------LIDGNLIISNPSEVKDSGR   73 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE--------eeCCeEEEccCCccCcCEE
Confidence            5566666666554   4789999999999999999999999988643321111        223589999985 699999


Q ss_pred             EEEEeecCCcceeE-EEEE
Q psy10487        337 YTCYAENIRGNASG-EISL  354 (610)
Q Consensus       337 Y~C~a~N~~G~~~~-~~~L  354 (610)
                      |+|.|.|.+|...+ .+.|
T Consensus        74 Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          74 YQCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEEEcCCCeEEeccEEE
Confidence            99999999998743 4444

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.43  E-value=8.4e-13  Score=107.25  Aligned_cols=82  Identities=28%  Similarity=0.418  Sum_probs=66.3

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+............     .....|.|.+++.+|+|.|+|.|.|..|.+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe-----CCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            45778999999999999999999999999988654432111100     1134799999999999999999999999999


Q ss_pred             EEEEEEc
Q psy10487        350 GEISLDL  356 (610)
Q Consensus       350 ~~~~L~V  356 (610)
                      +++.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            9998876

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.43  E-value=7e-13  Score=106.05  Aligned_cols=78  Identities=31%  Similarity=0.414  Sum_probs=61.0

Q ss_pred             EEEEEEEecCCCeEEEEeCCEEeccCCccceeeccC-CceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        279 TMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG-DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       279 ~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .+.|.+.|.|.|+|+|+|+|..+............. .......+.|+|.+++.+|+|.|+|+|.|.+|.+++++.++.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            378999999999999999999998665432221111 001134568999999999999999999999999999988765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.42  E-value=1.2e-12  Score=106.07  Aligned_cols=79  Identities=25%  Similarity=0.330  Sum_probs=62.0

Q ss_pred             ceEEEEEEEEecCCC--eEEEEeCCEEeccCCccce--eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        276 GNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLL--EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       276 ~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      ++++|.|.+.|+|.|  .+.|+++|..+........  ....    ....+.|+|.+++..|+|.|+|.|.|.+|.++++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV----KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe----cceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            468999999999998  5899999988865321111  1100    0234699999999999999999999999999999


Q ss_pred             EEEEcCc
Q psy10487        352 ISLDLPE  358 (610)
Q Consensus       352 ~~L~V~~  358 (610)
                      +.|.|..
T Consensus        77 ~~L~V~~   83 (85)
T cd05854          77 ATLVVRG   83 (85)
T ss_pred             EEEEEEC
Confidence            9999853

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.41  E-value=2.3e-12  Score=106.61  Aligned_cols=87  Identities=25%  Similarity=0.380  Sum_probs=65.9

Q ss_pred             CceeeeecceEeecC---ceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC-CCCCeE
Q psy10487        261 PNVTIKESMVIREAG---GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDAGE  336 (610)
Q Consensus       261 P~i~~~~~~~~v~~G---~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~  336 (610)
                      |.+...|..+.+.+|   ++++|.|.+.|+|.|+|+|+++|..+.........        ...+.|.|.++. ..|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~--------~~~g~L~I~~~~~~~D~G~   73 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYT--------LVAGNLVINNPQKARDAGS   73 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEE--------EECCeEEEccCCccCcCEE
Confidence            556667777776655   58999999999999999999999988643321111        223589998865 599999


Q ss_pred             EEEEeecCCcceeE-EEEEE
Q psy10487        337 YTCYAENIRGNASG-EISLD  355 (610)
Q Consensus       337 Y~C~a~N~~G~~~~-~~~L~  355 (610)
                      |+|.|.|..|.... .+.|.
T Consensus        74 Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          74 YQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             EEEEEEcCcCcEEEEEEEEe
Confidence            99999999998754 66553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.41  E-value=7.1e-13  Score=102.64  Aligned_cols=68  Identities=29%  Similarity=0.514  Sum_probs=55.3

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +.|.|.+.|.|.|.++|+|||.++.....   .        ...+.|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~---~--------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT---F--------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE---E--------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            36899999999999999999999865421   1        11237999999999999999999999998766555544

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=1.5e-12  Score=100.83  Aligned_cols=68  Identities=25%  Similarity=0.495  Sum_probs=55.3

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |++++|.|.+.|.|.|.|.|+|++..+......  .        .....|+|.+++  |+|.|+|.|.|..|...+++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~--~--------~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM--P--------VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccce--e--------cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            678999999999999999999999887543321  1        112378898874  8999999999999999888876

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.40  E-value=2.2e-12  Score=109.79  Aligned_cols=98  Identities=24%  Similarity=0.334  Sum_probs=71.1

Q ss_pred             CCceeeeec--ceEe--ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC-CCCC
Q psy10487        260 PPNVTIKES--MVIR--EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDA  334 (610)
Q Consensus       260 ~P~i~~~~~--~~~v--~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~  334 (610)
                      +|.|...+.  .+..  ..|..++|.|.+.|.|.|.+.|+++|..+.............. .....+.|+|.+++ .+|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~-~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHT-GTVHTSILTIINVSAALDY   82 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeecc-CccceeEEEECcCCccCCC
Confidence            566655544  2222  3568899999999999999999999998865432221111110 01224689999997 5999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |.|+|.|.|..|.+..++.|.|.+
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecC
Confidence            999999999999999999999854

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>KOG0444|consensus

Probab=99.40  E-value=3.1e-14  Score=147.10  Aligned_cols=172  Identities=25%  Similarity=0.402  Sum_probs=141.7

Q ss_pred             cEEEcCCCCCC--ccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKDANFT--ALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~~~l~--~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      ++++-+.++|+  .||..|-  ..|++|||++|++++.+.+.-   .-.++-.|+|++|+|..|+...|-+|..|-.|||
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            34555666665  5777663  589999999999998886543   2567889999999999999888999999999999


Q ss_pred             cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcccc--ccCHHHhhcCcccccccccccccc
Q psy10487        113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH--SVHKDALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~  190 (610)
                      |+|++..++|+ ...+..|+.|.|++|++......++..+++|+.|.+++.+-+  .+ |..+..+.+|..+|++.|.+.
T Consensus       158 S~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~-Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  158 SNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI-PTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             ccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC-CCchhhhhhhhhccccccCCC
Confidence            99999999986 577899999999999998887778888899999999887533  33 455677899999999999998


Q ss_pred             ccCcccccCCCcccEEecCCCccc
Q psy10487        191 HLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       191 ~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .++. .+..+.+|+.|+|++|.++
T Consensus       236 ~vPe-cly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  236 IVPE-CLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cchH-HHhhhhhhheeccCcCcee
Confidence            8766 5568999999999999875

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=1.1e-12  Score=102.34  Aligned_cols=70  Identities=27%  Similarity=0.461  Sum_probs=57.9

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +.|.|.+.|.|.|.+.|++++..+.....  ...       ...+.|+|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT--KKL-------NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce--eEE-------cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47999999999999999999876654321  111       12358999999999999999999999999999999887

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.39  E-value=2.5e-12  Score=107.48  Aligned_cols=93  Identities=25%  Similarity=0.415  Sum_probs=69.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCc-cceeeccCCceeeeeeEEEEEecCCCC-CeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSF-DLLEEEEGDALFEKSVSITLFNVTDLD-AGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D-~G~  336 (610)
                      ||.+ ..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+..... ......... .....+.|+|.+++.+| .|.
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~-~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS-PGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEECCcccccccee
Confidence            3444 44566778999999999999999999 6999999998865431 111111110 01223589999999955 899


Q ss_pred             EEEEeecCCcceeEEEEE
Q psy10487        337 YTCYAENIRGNASGEISL  354 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+|.|.|..|.+.+.+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999999888876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.39  E-value=1.7e-12  Score=103.49  Aligned_cols=76  Identities=33%  Similarity=0.442  Sum_probs=60.2

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |++++|.|.+.|.|.|.+.|++++..+....+.......      ..+.|+|.+++.+|+|.|+|.|.|..|.....+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEG------GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECC------CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            688999999999999999999998877654332211111      23589999999999999999999999998776655


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .+
T Consensus        75 ~~   76 (78)
T cd05743          75 IL   76 (78)
T ss_pred             EE
Confidence            43

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.39  E-value=4.2e-12  Score=104.02  Aligned_cols=87  Identities=29%  Similarity=0.518  Sum_probs=67.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      +.+.+.+..+.+|+.+.|.|.+.|.|. .+.|++ ++..+....+.. ...++     ..+.|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~-~~~~g-----~~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVV-VQKEG-----VRSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEE-EEeCC-----CeeEEEEecCChHHCEEEEEEE
Confidence            456778889999999999999999998 899998 466665433211 11111     1248999999999999999999


Q ss_pred             ecCCcce-eEEEEEEc
Q psy10487        342 ENIRGNA-SGEISLDL  356 (610)
Q Consensus       342 ~N~~G~~-~~~~~L~V  356 (610)
                      .|..|.. .+++.|.+
T Consensus        76 ~N~~G~~~~~~i~l~~   91 (92)
T cd05866          76 TDAKGQTQEATVVLEI   91 (92)
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999986 56777764

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=1.2e-12  Score=101.69  Aligned_cols=69  Identities=38%  Similarity=0.566  Sum_probs=57.0

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.+.|+|++..+.....  .        ....+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~--~--------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRA--E--------ILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcE--E--------EeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999876543221  1        112348999999999999999999999999999988875

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.38  E-value=1.7e-12  Score=104.57  Aligned_cols=79  Identities=28%  Similarity=0.561  Sum_probs=64.4

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      +....|+.+.|.|.+.|.|.|.+.|++++..+........        ....+.|.|.+++.+|+|.|+|.|.|..|.++
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   75 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES--------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN   75 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee--------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence            3456799999999999999999999999987654332110        01235899999999999999999999999999


Q ss_pred             EEEEEEc
Q psy10487        350 GEISLDL  356 (610)
Q Consensus       350 ~~~~L~V  356 (610)
                      +++.|.|
T Consensus        76 ~~~~v~v   82 (82)
T cd05856          76 ATYKVDV   82 (82)
T ss_pred             EEEEEeC
Confidence            8888865

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=3e-12  Score=104.19  Aligned_cols=83  Identities=25%  Similarity=0.414  Sum_probs=66.1

Q ss_pred             eecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        266 KESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .|....+.+|+++.|.|.+ .|.|.|.+.|++++..+.........        ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~--------~~~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI--------VDDGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE--------ccCCEEEEeECCcccCEEEEEEEEec
Confidence            3567788899999999998 79999999999999887654321111        11358999999999999999999999


Q ss_pred             Ccce-eEEEEEEc
Q psy10487        345 RGNA-SGEISLDL  356 (610)
Q Consensus       345 ~G~~-~~~~~L~V  356 (610)
                      .|.. +..+.|.|
T Consensus        74 ~G~~~s~~~~l~V   86 (86)
T cd05724          74 VGERESAAARLSV   86 (86)
T ss_pred             cCceeeeeEEEEC
Confidence            9986 45666654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.38  E-value=2.4e-12  Score=102.22  Aligned_cols=72  Identities=29%  Similarity=0.528  Sum_probs=55.9

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE--EEEEE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG--EISLD  355 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~L~  355 (610)
                      ++|.|.+.|.|.|.|.|+|+|..+.......... .      ..+.|.|.+++.+|+|.|+|.|.|.+|....  .++|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS-S------KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe-C------CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            4799999999999999999999876543211111 1      1248999999999999999999999998754  55555


Q ss_pred             c
Q psy10487        356 L  356 (610)
Q Consensus       356 V  356 (610)
                      |
T Consensus        74 v   74 (77)
T cd05760          74 I   74 (77)
T ss_pred             E
Confidence            4

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.38  E-value=1.7e-12  Score=104.09  Aligned_cols=79  Identities=15%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             ceEEEEEEEEec--CCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        276 GNVTMSCYVYGD--PEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       276 ~~v~l~C~~~g~--P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      +++.|.|.+.++  +++.+.|++||..+.....  ........    ...+.|+|.+++..|+|.|+|.|.|.++..+++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            468999999874  5788999999999963221  11111110    123589999999999999999999999999999


Q ss_pred             EEEEcCc
Q psy10487        352 ISLDLPE  358 (610)
Q Consensus       352 ~~L~V~~  358 (610)
                      +.|.|..
T Consensus        77 a~L~V~~   83 (85)
T cd05853          77 ADLIVRG   83 (85)
T ss_pred             EEEEEec
Confidence            9999853

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.38  E-value=2.1e-12  Score=100.78  Aligned_cols=69  Identities=28%  Similarity=0.472  Sum_probs=57.4

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +.|.|.+.|.|.|.+.|+|+|..+....+  ..        ...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~--~~--------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR--TK--------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--EE--------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            46999999999999999999998876532  11        12248999999999999999999999999887777765

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.38  E-value=3.1e-12  Score=100.85  Aligned_cols=73  Identities=34%  Similarity=0.658  Sum_probs=59.1

Q ss_pred             CceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+ ...        ...+.|.|.+++.+|+|.|+|.|.|..|.+++++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-~~~--------~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR-TLV--------YDNGTLDILITTVKDTGSFTCIASNAAGEATATVE   71 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe-EEE--------ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEE
Confidence            6889999999999999999997 5555543321 111        22358999999999999999999999999999988


Q ss_pred             EEc
Q psy10487        354 LDL  356 (610)
Q Consensus       354 L~V  356 (610)
                      |.|
T Consensus        72 l~v   74 (74)
T cd05764          72 LHI   74 (74)
T ss_pred             EEC
Confidence            875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG0618|consensus

Probab=99.37  E-value=2e-14  Score=155.25  Aligned_cols=184  Identities=25%  Similarity=0.331  Sum_probs=151.1

Q ss_pred             CCCCeeCccCCCcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhccc-----------------------C
Q psy10487         25 PDTCRCKWTLGKKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSI-----------------------G   79 (610)
Q Consensus        25 p~~C~C~~~~~~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~-----------------------~   79 (610)
                      |..|.|.|.  -..++|..+.++-+|..+.  +.|++|+|+.|+|..+++..|...                       .
T Consensus       280 p~ri~~~~~--L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  280 PLRISRITS--LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             HHHHhhhhh--HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            446667664  3567888889998987664  589999999999999988765431                       1


Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEE
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE  159 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  159 (610)
                      +..|+.|++.+|.++.-.-..|-+++.|+.|+|++|+|..++...+.+++.|++|+|++|.++.++ ....++..|+.|.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHh
Confidence            234677888888888765566888999999999999999999999999999999999999999997 5678889999999


Q ss_pred             ccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       160 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      ..+|+|..++  .+..++.|+.+|++.|.|+...-......++|+.|+++||.+
T Consensus       437 ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  437 AHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            9999998885  678899999999999999876544444558999999999986

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.37  E-value=1.8e-12  Score=106.37  Aligned_cols=82  Identities=30%  Similarity=0.408  Sum_probs=58.8

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCC----EEeccCCccc-eeecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNG----QVLHNSSFDL-LEEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g----~~l~~~~~~~-~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      |+.++|.|.+.|.|.|+|+|+|++    ..+....... .....  ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    3332111110 00000  0000012247999999999999999999999999


Q ss_pred             eeEEEEEEc
Q psy10487        348 ASGEISLDL  356 (610)
Q Consensus       348 ~~~~~~L~V  356 (610)
                      ..+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            999999987

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.37  E-value=2.4e-12  Score=102.75  Aligned_cols=76  Identities=20%  Similarity=0.437  Sum_probs=60.6

Q ss_pred             eeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..|.++.+.+|+++.|.|.+.|.|.| +|.|+|+|.++.....            ...+.|.|..+  .|+|.|+|+|.|
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~------------~~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA------------PSPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC------------CCCCEEEEccc--cCCeEEEEEEEe
Confidence            45678889999999999999999999 7999999998764110            12247888887  488999999999


Q ss_pred             CCcceeE-EEEE
Q psy10487        344 IRGNASG-EISL  354 (610)
Q Consensus       344 ~~G~~~~-~~~L  354 (610)
                      .+|...+ .+.|
T Consensus        69 ~~G~~~s~~a~~   80 (81)
T cd05749          69 AKGVTTSRTGTV   80 (81)
T ss_pred             ccCcEEeeeEEe
Confidence            9997654 5544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.37  E-value=3e-12  Score=105.01  Aligned_cols=80  Identities=30%  Similarity=0.430  Sum_probs=64.7

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      +.++.+.+|++++|.|.+.|. .|.|.|++++..+....   .....      ..+.|+|.+++.+|+|.|+|.|.|..|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~---~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR---LQLSN------DNRTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC---EEEeC------CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            456789999999999999999 99999999998875432   11111      124899999999999999999999999


Q ss_pred             ce-eEEEEEEc
Q psy10487        347 NA-SGEISLDL  356 (610)
Q Consensus       347 ~~-~~~~~L~V  356 (610)
                      .. +..+.|.|
T Consensus        80 ~~~S~~~~L~V   90 (91)
T cd05740          80 NMTSDPYILNV   90 (91)
T ss_pred             CEEeeeEEEEe
Confidence            85 45777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG0617|consensus

Probab=99.37  E-value=9.8e-15  Score=127.91  Aligned_cols=166  Identities=26%  Similarity=0.318  Sum_probs=138.9

Q ss_pred             CCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc
Q psy10487         44 ANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ  122 (610)
Q Consensus        44 ~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~  122 (610)
                      ..+.++|.-+ .++++.|.|++|+++.+++..-   .|.+|+.|++.+|+|.+++. +++.+++|+.|+++-|++..++ 
T Consensus        21 Ssf~~~~gLf~~s~ITrLtLSHNKl~~vppnia---~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lp-   95 (264)
T KOG0617|consen   21 SSFEELPGLFNMSNITRLTLSHNKLTVVPPNIA---ELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILP-   95 (264)
T ss_pred             ccHhhcccccchhhhhhhhcccCceeecCCcHH---HhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCc-
Confidence            3445566433 3589999999999999998765   48899999999999999975 5899999999999999998776 


Q ss_pred             ccccCCCCCcEEEeeCccccc-cCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCC
Q psy10487        123 DTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP  201 (610)
Q Consensus       123 ~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  201 (610)
                      ..|+.++.|+.|+|.+|++.. ..++.|-.+..|+.|+|++|.+.-+++ .++++.+|+.|.++.|.+-+++.+ ++.+.
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpke-ig~lt  173 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKE-IGDLT  173 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHH-HHHHH
Confidence            569999999999999998875 334566678899999999999987754 578999999999999999888774 56788


Q ss_pred             cccEEecCCCccccc
Q psy10487        202 NLKTLSLDGNPWCCD  216 (610)
Q Consensus       202 ~L~~l~l~~N~~~c~  216 (610)
                      .|++|++++|.+.--
T Consensus       174 ~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVL  188 (264)
T ss_pred             HHHHHhcccceeeec
Confidence            999999999987643

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.36  E-value=1.8e-12  Score=100.59  Aligned_cols=68  Identities=34%  Similarity=0.494  Sum_probs=56.8

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      +.|.|.+.|.|.|.+.|+|+|..+....+..  .       ...+.|.|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~--~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFH--I-------SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEE--E-------CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4799999999999999999998876543211  1       123589999999999999999999999999988876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.36  E-value=5.6e-12  Score=104.73  Aligned_cols=86  Identities=28%  Similarity=0.439  Sum_probs=66.6

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEec-----CCCCCeEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV-----TDLDAGEYT  338 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v-----~~~D~G~Y~  338 (610)
                      ...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..........       ...+.|.|.++     +..|+|.|+
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~-------~~~~~l~i~~v~~~~~~~~D~G~Y~   75 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ-------LPNGSLLITSVVHSKHNKPDEGFYQ   75 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE-------ccCCeEEEeeeeccCCCCCcCEEEE
Confidence            456777888899999999999999999999999999886543211111       12246777776     589999999


Q ss_pred             EEeecC-Ccce-eEEEEEEc
Q psy10487        339 CYAENI-RGNA-SGEISLDL  356 (610)
Q Consensus       339 C~a~N~-~G~~-~~~~~L~V  356 (610)
                      |.|.|. .|.. +..+.|.|
T Consensus        76 C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          76 CVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEECCccCcEEEeeeEEeC
Confidence            999999 9986 56777765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.36  E-value=3.5e-12  Score=104.73  Aligned_cols=82  Identities=32%  Similarity=0.469  Sum_probs=59.8

Q ss_pred             CceEEEEEEEEecCCCeEEEEeC----CEEeccCCccceee-ccCCcee--eeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLN----GQVLHNSSFDLLEE-EEGDALF--EKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~----g~~l~~~~~~~~~~-~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      |+.++|.|.+.|.|.|.|.|+|+    +..+.......... .......  ...+.|+|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    44443222111111 1110000  11258999999999999999999999999


Q ss_pred             eeEEEEEEc
Q psy10487        348 ASGEISLDL  356 (610)
Q Consensus       348 ~~~~~~L~V  356 (610)
                      +.+++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.35  E-value=3.1e-12  Score=101.17  Aligned_cols=73  Identities=23%  Similarity=0.425  Sum_probs=56.5

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccC-CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNS-SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.++|+|++...... ...+....      ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM------PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe------cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999999999999999988643221 11111111      11248999999999999999999999999999999887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.35  E-value=9.4e-12  Score=102.50  Aligned_cols=88  Identities=26%  Similarity=0.460  Sum_probs=66.6

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      +.+.|....+..|+++.|.|.+.|.| +.+.|++ ++..+......... ..+    ...+.|+|.+++.+|+|.|+|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~-~~~----~~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV-QND----DVRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE-eCC----CCEEEEEEecCCcccCEEEEEEE
Confidence            45678888999999999999999997 5999998 56555443322111 111    12358999999999999999999


Q ss_pred             ecCCc-ceeEEEEEEc
Q psy10487        342 ENIRG-NASGEISLDL  356 (610)
Q Consensus       342 ~N~~G-~~~~~~~L~V  356 (610)
                      .|..| ...+++.|.|
T Consensus        77 ~N~~g~~~~~sv~l~~   92 (92)
T cd04977          77 TDAKGTESEATVNLKI   92 (92)
T ss_pred             EcCCCCcceeEEEEEC
Confidence            99965 4677887764

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.35  E-value=3.7e-12  Score=101.75  Aligned_cols=79  Identities=16%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      |+...+.+|+.+.|.|.+.|. .|.+.|+|+|.++....+.  .        ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~--~--------~~~~~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRT--R--------ITGEEVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceE--E--------EeCCEEEECCCChhhCEEEEEEEeCCCC
Confidence            345678899999999999996 6789999999888654321  1        1123799999999999999999999999


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .....+.|.|
T Consensus        70 ~~~~~~~v~V   79 (79)
T cd04973          70 SDTTYFSVNV   79 (79)
T ss_pred             cccEEEEEeC
Confidence            9888887765

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.35  E-value=5.3e-12  Score=104.02  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=64.4

Q ss_pred             CceeeeecceEeecC---ceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC-CCCCeE
Q psy10487        261 PNVTIKESMVIREAG---GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDAGE  336 (610)
Q Consensus       261 P~i~~~~~~~~v~~G---~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~  336 (610)
                      |.+...|..+.+.++   +.+.|.|.+.|+|.|+++|+|++..+.......         ....+.|.|.++. .+|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~---------~~~~g~L~I~~~~~~~D~G~   72 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY---------SMVGGNLVINNPDKYKDAGR   72 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE---------EEECCEEEECcCCcCCCCEE
Confidence            555666666655543   479999999999999999999998875332211         1224589999985 689999


Q ss_pred             EEEEeecCCcceeE-EEEEE
Q psy10487        337 YTCYAENIRGNASG-EISLD  355 (610)
Q Consensus       337 Y~C~a~N~~G~~~~-~~~L~  355 (610)
                      |+|.|.|..|.+.. .+.|.
T Consensus        73 Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          73 YVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EEEEEEeCcceEEEccEEEe
Confidence            99999999998744 66553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=4e-12  Score=100.16  Aligned_cols=72  Identities=28%  Similarity=0.496  Sum_probs=57.2

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.|.|+|++..+......+...       ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-------~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-------LRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-------cCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999998876432211211       123579999999999999999999999985 67788776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.35  E-value=3.2e-12  Score=105.00  Aligned_cols=83  Identities=25%  Similarity=0.469  Sum_probs=61.8

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+.++|.|.+.|.|.|.+.|++++..+...... .............+.|+|.+++.+|+|.|+|.|.|..|...+.+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~-~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQ-PPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeeccc-CCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            688999999999999999999987643211000 0000111111224589999999999999999999999999999999


Q ss_pred             EcCc
Q psy10487        355 DLPE  358 (610)
Q Consensus       355 ~V~~  358 (610)
                      .|.+
T Consensus        80 ~V~~   83 (90)
T cd05726          80 EVTD   83 (90)
T ss_pred             EEee
Confidence            9954

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.35  E-value=4.2e-12  Score=103.06  Aligned_cols=81  Identities=22%  Similarity=0.300  Sum_probs=61.5

Q ss_pred             ceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        276 GNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       276 ~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      ++++|.|.+.|.|.|  ++.|+++|..+........+....  .....+.|.|.+++..|+|.|+|.|.|..|..++++.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG--GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe--cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence            468999999999988  569999999886433211000000  0012468999999999999999999999999999999


Q ss_pred             EEcCc
Q psy10487        354 LDLPE  358 (610)
Q Consensus       354 L~V~~  358 (610)
                      |.|.+
T Consensus        79 l~V~~   83 (85)
T cd04970          79 LIVRG   83 (85)
T ss_pred             EEEEC
Confidence            99853

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.34  E-value=4.2e-12  Score=141.95  Aligned_cols=160  Identities=25%  Similarity=0.338  Sum_probs=124.0

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      ...+++.+.+++++|..++.+++.|+|++|+|+.++...+     .+|+.|+|++|+|+.++.. +  ...|+.|+|++|
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N  251 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-----GNIKTLYANSNQLTSIPAT-L--PDTIQEMELSIN  251 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-----cCCCEEECCCCccccCChh-h--hccccEEECcCC
Confidence            4678899999999999899999999999999999987654     3899999999999988653 3  247899999999


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      +|..++....   .+|+.|+|++|+++.++.. +.  .+|+.|+|++|+|+.++.. +  ..+|+.|++++|.++.++..
T Consensus       252 ~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        252 RITELPERLP---SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ccCcCChhHh---CCCCEEECcCCccCccccc-cC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCcc
Confidence            9998875432   5799999999999987653 32  5799999999999887532 2  13677788888887776543


Q ss_pred             cccCCCcccEEecCCCcccc
Q psy10487        196 VFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~c  215 (610)
                      ..   ++|+.|++++|.+.+
T Consensus       323 l~---~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        323 LP---PGLKTLEAGENALTS  339 (754)
T ss_pred             cc---ccceeccccCCcccc
Confidence            32   456667777766554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=4.8e-12  Score=140.74  Aligned_cols=161  Identities=21%  Similarity=0.273  Sum_probs=117.7

Q ss_pred             CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      .|.|-. .+...++|.+.+|+++|..++.+|+.|+|.+|+|+.++.      .+++|++|+|++|+|+.++.    ..++
T Consensus       195 ~~~Cl~-~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~----lp~s  263 (788)
T PRK15387        195 MRACLN-NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----LPPG  263 (788)
T ss_pred             HHHHhc-CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccC----cccc
Confidence            345654 335789999999999999999999999999999999874      25789999999999998863    2467


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG  186 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  186 (610)
                      |+.|+|++|.|..++. .   ..+|+.|+|++|.++.++.    .+++|+.|+|++|+|+.++. .   ..+|+.|++++
T Consensus       264 L~~L~Ls~N~L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~  331 (788)
T PRK15387        264 LLELSIFSNPLTHLPA-L---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYN  331 (788)
T ss_pred             cceeeccCCchhhhhh-c---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC-C---ccccccccccc
Confidence            8888999988887764 2   2567788888888877654    23678888888888877642 1   23456666666


Q ss_pred             ccccccCcccccCCCcccEEecCCCccc
Q psy10487        187 NRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       187 n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      |.|+.++.  +  ..+|+.|++++|.+.
T Consensus       332 N~L~~LP~--l--p~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        332 NQLTSLPT--L--PSGLQELSVSDNQLA  355 (788)
T ss_pred             Cccccccc--c--ccccceEecCCCccC
Confidence            66666543  1  135666666666654

>KOG0472|consensus

Probab=99.32  E-value=4.5e-14  Score=139.19  Aligned_cols=178  Identities=25%  Similarity=0.353  Sum_probs=133.9

Q ss_pred             CCCCCCccCcccCC--CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCC
Q psy10487         42 KDANFTALPSTLDS--DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW  119 (610)
Q Consensus        42 ~~~~l~~lP~~l~~--~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~  119 (610)
                      .++++.++|..+..  .+..|++.+|+++.+++....   +..|++|+...|-+..++++ ++++.+|.-|+|..|+|..
T Consensus       145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~---m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA---MKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             cccccccCchHHHHHHHHHHhhccccchhhCCHHHHH---HHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhccccc
Confidence            34555566654432  455566666666666665553   66777777777777777654 6788888888888888888


Q ss_pred             CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccC
Q psy10487        120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP  199 (610)
Q Consensus       120 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  199 (610)
                      ++  .|.++..|.+|+++.|.|..++.....++++|..|||.+|+++++ |+.+..+.+|+.||+++|.|+.++. .+++
T Consensus       221 lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp~-sLgn  296 (565)
T KOG0472|consen  221 LP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLPY-SLGN  296 (565)
T ss_pred             CC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccccCCc-cccc
Confidence            87  488888888888888888888887777899999999999999999 5566788899999999999999977 4677


Q ss_pred             CCcccEEecCCCcccc------cCCchhhHHHHhh
Q psy10487        200 TPNLKTLSLDGNPWCC------DCHLRSFRNWLLK  228 (610)
Q Consensus       200 ~~~L~~l~l~~N~~~c------~c~l~~~~~~l~~  228 (610)
                      + +|+.|.+.||++.-      .|.-+....++.+
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            7 89999999999632      2555555555554

>KOG0472|consensus

Probab=99.31  E-value=3.5e-14  Score=139.95  Aligned_cols=170  Identities=26%  Similarity=0.441  Sum_probs=127.3

Q ss_pred             EEEcCCCCCCccCcccCC--CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         38 SALCKDANFTALPSTLDS--DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        38 ~~~C~~~~l~~lP~~l~~--~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      .++|..+.++++|.++..  .+..|+..+|+|+.++++.+.   +.+|..|.+.+|.+..+++.-+. ++.|++||...|
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~---~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVN---LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHH---HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh
Confidence            456667777777776654  566777777777777776663   66777777888888777776655 778888888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      -+..++++ ++++.+|..|+|..|.+..++  .|..+..|..|+++.|+|.-++.....++.+|..|||+.|+++..+.+
T Consensus       194 ~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  194 LLETLPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             hhhcCChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence            88877764 677888888888888888776  377888888888888888877666666788888888888888888775


Q ss_pred             cccCCCcccEEecCCCcccc
Q psy10487        196 VFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~c  215 (610)
                      .. .+++|..||+++|.++.
T Consensus       271 ~c-lLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  271 IC-LLRSLERLDLSNNDISS  289 (565)
T ss_pred             HH-HhhhhhhhcccCCcccc
Confidence            44 56677888888887643

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=7.5e-12  Score=97.78  Aligned_cols=70  Identities=31%  Similarity=0.519  Sum_probs=57.3

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +.|.|.+.|.|.|.+.|++++..+.....   ...      ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~---~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRT---KFE------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCce---eEe------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999999999999999999877643221   111      12248999999999999999999999999999998877

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.29  E-value=1.6e-11  Score=97.26  Aligned_cols=74  Identities=28%  Similarity=0.398  Sum_probs=59.8

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +.|.|.+.|.|.|.+.|+|++..+......+......      ...|.|.+++.+|.|.|+|.|.|..|.++.++.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~------~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIAN------GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCC------CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            4689999999999999999999876543322221111      1379999999999999999999999999999999883

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.28  E-value=1.2e-11  Score=99.30  Aligned_cols=78  Identities=27%  Similarity=0.483  Sum_probs=57.9

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCE---EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQ---VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~---~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      |+.++|.|.+.|.|.|.+.|+|++.   .+.......    .........+.|.|.+++.+|+|.|+|.|.|.+|.+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHV----RGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcc----cCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            6889999999999999999999742   111000000    000011223589999999999999999999999999999


Q ss_pred             EEEEc
Q psy10487        352 ISLDL  356 (610)
Q Consensus       352 ~~L~V  356 (610)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            99876

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=7.1e-12  Score=140.12  Aligned_cols=119  Identities=21%  Similarity=0.352  Sum_probs=81.3

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      -..++..+++++++|..+..+|++|+|++|+|+.++....     .+|+.|+|++|++..++.. +.  .+|+.|+|++|
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N  272 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP-----DTIQEMELSINRITELPER-LP--SALQSLDLFHN  272 (754)
T ss_pred             CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh-----ccccEEECcCCccCcCChh-Hh--CCCCEEECcCC
Confidence            3567888888999988888889999999998888875432     3678888888888877543 32  46788888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcccccc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV  168 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  168 (610)
                      +|..++.. +.  .+|+.|+|++|.++.++.. +.  .+|+.|+|++|++..+
T Consensus       273 ~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        273 KISCLPEN-LP--EELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTAL  319 (754)
T ss_pred             ccCccccc-cC--CCCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccC
Confidence            88776543 22  4677888888877766432 11  2344445555544444

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=1.6e-11  Score=97.42  Aligned_cols=77  Identities=25%  Similarity=0.506  Sum_probs=62.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.+...|....+.+|++++|.|.+.|.|.+ .+.|+|||..+....                +.|.|.++ .+|+|.|+|
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~----------------~~l~i~~~-~~dsG~Y~C   63 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT----------------NSYRIRAA-NNDSGEYRC   63 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC----------------CeEEEeec-ccCCEEeEE
Confidence            456777888999999999999999998874 699999998873221                37999999 999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|.  ..+..+.|+|
T Consensus        64 ~a~~~--~~S~~v~l~V   78 (78)
T cd05752          64 QTQGS--SLSDPVHLEV   78 (78)
T ss_pred             ECCCC--cCCCCEEEeC
Confidence            99985  4444555543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.27  E-value=3.9e-11  Score=98.75  Aligned_cols=82  Identities=28%  Similarity=0.493  Sum_probs=61.3

Q ss_pred             CceeeeecceEeec---CceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeE
Q psy10487        261 PNVTIKESMVIREA---GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGE  336 (610)
Q Consensus       261 P~i~~~~~~~~v~~---G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~  336 (610)
                      |.|...+..+.+.+   |+.++|.|.+.|+|.|+++|++++..+.........        ...+.|.|.++.. +|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~--------~~~~~L~i~~~~~~~d~G~   73 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS--------LVGGNLVISNPSKAKDAGR   73 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE--------EECCEEEEecCCccCCCEE
Confidence            45555666665543   467999999999999999999999887433221111        2235899998874 89999


Q ss_pred             EEEEeecCCcceeE
Q psy10487        337 YTCYAENIRGNASG  350 (610)
Q Consensus       337 Y~C~a~N~~G~~~~  350 (610)
                      |+|+|.|..|.+..
T Consensus        74 Y~C~a~N~~G~~~S   87 (91)
T cd04967          74 YQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEcCCCEEEe
Confidence            99999999998654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.25  E-value=2e-11  Score=96.47  Aligned_cols=72  Identities=24%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCcccee-eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      ++|.|.+.| .|.|++.|+|+|..+......... ....    ...+.|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK----KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEec----CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            369999999 999999999999988765432211 1111    12468999999999999999999999999887764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.25  E-value=2.5e-11  Score=100.14  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=64.5

Q ss_pred             cceEeecCceEEEEEEEEe-----cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        268 SMVIREAGGNVTMSCYVYG-----DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g-----~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ....+.+|+.+.|.|.+.|     .|.|.|.|+|++..+.........      .....+.|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r------~~~~~~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSR------MHQQKDLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccce------eeecCCeEEEccCCcccCeEEEEEEc
Confidence            4566778999999999999     799999999998654322110000      01123589999999999999999999


Q ss_pred             cCCcceeEEEEEEc
Q psy10487        343 NIRGNASGEISLDL  356 (610)
Q Consensus       343 N~~G~~~~~~~L~V  356 (610)
                      |..|.++..+.|.|
T Consensus        81 N~~g~~~~~~~L~v   94 (94)
T cd05756          81 NSTYCMKVSISLTV   94 (94)
T ss_pred             CCCccEEEEEEEEC
Confidence            99999999998875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.24  E-value=2.4e-11  Score=135.23  Aligned_cols=161  Identities=22%  Similarity=0.242  Sum_probs=100.4

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhh--ccc------------CCCCccEEEcccCCCcccchhhhc
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAF--KSI------------GLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~--~~~------------~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      ..+++.+++++.+|. .+.+|+.|+|++|+|+.++....  ..+            ...+|+.|+|++|+|+.++..   
T Consensus       285 ~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---  360 (788)
T PRK15387        285 CKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---  360 (788)
T ss_pred             CEEECcCCccccccc-cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---
Confidence            346667777777774 45678888888887777653110  000            001344555555555444321   


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                       ..+|+.|++++|+|..++.    ...+|+.|+|++|.++.++..    ..+|+.|++++|+|+.++. .   ..+|+.|
T Consensus       361 -p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L  427 (788)
T PRK15387        361 -PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSL  427 (788)
T ss_pred             -CcccceehhhccccccCcc----cccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhh
Confidence             2234444555555554432    124677788888877766531    2578888888888887743 2   2467888


Q ss_pred             ccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      ++++|+|+.++.. +..+.+|..|++++|++.+
T Consensus       428 ~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        428 SVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence            9999999888654 5678889999999999874

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.24  E-value=3e-11  Score=96.53  Aligned_cols=78  Identities=27%  Similarity=0.364  Sum_probs=54.4

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL  356 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  356 (610)
                      ++|.|.+.|.|.|.+.|++++......... .....++......+.|.|.+++.+|+|.|+|.|.|..|.+ +..+.|+|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~-~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTH-TCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCcccccccc-ccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            479999999999999999964322111000 0001111112234689999999999999999999999987 56777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.23  E-value=3.6e-11  Score=95.44  Aligned_cols=71  Identities=31%  Similarity=0.521  Sum_probs=53.0

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC----CCCeEEEEEeecCCcceeE-EE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD----LDAGEYTCYAENIRGNASG-EI  352 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~-~~  352 (610)
                      ++|.|.+.|+|.|+|+|+|++..+......+....      ...+.|.|.++..    +|+|.|+|+|.|..|.+.. .+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~------~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK------PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe------CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence            47999999999999999999998754432222211      1235899998864    7899999999999998644 44


Q ss_pred             EE
Q psy10487        353 SL  354 (610)
Q Consensus       353 ~L  354 (610)
                      .|
T Consensus        75 ~l   76 (77)
T cd05733          75 HL   76 (77)
T ss_pred             EE
Confidence            43

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=7e-12  Score=114.90  Aligned_cols=123  Identities=25%  Similarity=0.363  Sum_probs=38.0

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .+++|+|++|.|+.|..-. .  .+.+|+.|+|++|.|+.+..  |..+..|++|++++|+|+.+.......+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~-~--~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLG-A--TLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ----------------S---T--T-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccchh-h--hhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            5667777777777664211 1  25567777777777776653  56667777777777777766543223466677777


Q ss_pred             eeCccccccCc-CcCCCCCCccEEEccCccccccCH---HHhhcCccccccc
Q psy10487        136 LNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLN  183 (610)
Q Consensus       136 Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  183 (610)
                      |++|+|..+.. ..+..+++|+.|+|.+|.+.....   ..+..+++|+.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77776666543 234455666666666666554321   1234445555544

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.22  E-value=5.8e-11  Score=94.15  Aligned_cols=71  Identities=23%  Similarity=0.429  Sum_probs=51.9

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC----CCCeEEEEEeecCCcceeE-EE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD----LDAGEYTCYAENIRGNASG-EI  352 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~-~~  352 (610)
                      +.|.|.+.|+|.|+|+|+|++..+...........      ...+.|.|..+..    .|+|.|+|.|.|..|.+.+ .+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~------~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK------PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe------CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence            47999999999999999999988743322111111      1235888888764    3789999999999998755 44


Q ss_pred             EE
Q psy10487        353 SL  354 (610)
Q Consensus       353 ~L  354 (610)
                      .|
T Consensus        75 ~~   76 (77)
T cd05874          75 VI   76 (77)
T ss_pred             EE
Confidence            43

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.22  E-value=6.3e-11  Score=95.89  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=60.6

Q ss_pred             CceEEEEEEEEec--CCCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE
Q psy10487        275 GGNVTMSCYVYGD--PEPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG  350 (610)
Q Consensus       275 G~~v~l~C~~~g~--P~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  350 (610)
                      |+.++|.|.+.|.  |.|.+.|.+++..+.......  ......   ....+.|+|.+++.+|+|.|+|.|.|..|..++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEA---TELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccc---eEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            7889999999999  889999999887653321110  011111   134579999999999999999999999999988


Q ss_pred             EEEEEc
Q psy10487        351 EISLDL  356 (610)
Q Consensus       351 ~~~L~V  356 (610)
                      ++.|.|
T Consensus        78 s~~v~v   83 (84)
T cd05742          78 STKVNI   83 (84)
T ss_pred             EEEEEE
Confidence            888865

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG0618|consensus

Probab=99.21  E-value=5.6e-13  Score=144.20  Aligned_cols=158  Identities=25%  Similarity=0.328  Sum_probs=101.8

Q ss_pred             cCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccc----------------------hhhhcCCCCCcEE
Q psy10487         53 LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH----------------------RDTFKYLTILVEV  110 (610)
Q Consensus        53 l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~----------------------~~~f~~l~~L~~L  110 (610)
                      .|.+++++++++|+++.++ ++..  .+.+|+.|.+.+|.|..++                      +....+++.|++|
T Consensus       239 ~p~nl~~~dis~n~l~~lp-~wi~--~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLP-EWIG--ACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccccceeeecchhhhhcch-HHHH--hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence            4557777777777777777 5544  4556666666655554332                      1224557788888


Q ss_pred             EccCCCCCCCCcccc-------------------------cCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccc
Q psy10487        111 DLSDNQIAWLHQDTF-------------------------LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI  165 (610)
Q Consensus       111 dLs~n~l~~l~~~~f-------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l  165 (610)
                      ||..|+|..++...|                         ..+..|+.|+|.+|.+++-.-..+.+..+|+.|+|++|+|
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            888888877664332                         1123466667777777766555666777888888888888


Q ss_pred             cccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       166 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ..++...+.++..|+.|+|++|+++.++. ....+..|++|...+|.+.
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCcee
Confidence            88877777888888888888888877763 2233444444444444433

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.20  E-value=5.7e-11  Score=92.21  Aligned_cols=67  Identities=22%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      +.|.|.+.|.|.|++.|+|++.++....... .        .....|.|.+++.+|+|.|+|.|.|..+.......
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~-~--------~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~   67 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY-H--------VDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT   67 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEE-E--------eCCCEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence            3689999999999999999999876543211 1        11237999999999999999999998766544433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.19  E-value=1e-10  Score=92.78  Aligned_cols=67  Identities=25%  Similarity=0.452  Sum_probs=49.5

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC----CCCeEEEEEeecCCcceeE
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD----LDAGEYTCYAENIRGNASG  350 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~  350 (610)
                      +.|.|.+.|+|.|.|+|+|++..+...........      ...+.|.|.++..    +|+|.|+|.|.|..|.+.+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~------~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR------RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe------CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            47999999999999999999987643222111111      1235899988752    4699999999999998754

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.19  E-value=1.4e-10  Score=95.68  Aligned_cols=93  Identities=24%  Similarity=0.391  Sum_probs=69.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCC-ccceeeccCCceeeeeeEEEEEecCCCC-CeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSS-FDLLEEEEGDALFEKSVSITLFNVTDLD-AGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D-~G~  336 (610)
                      ||.| .....+.+.+|+.++|.|.+.+.|+|. |.|..++..+.... .++.+.... ......+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcE
Confidence            4444 667788889999999999999999884 78988887776542 222221110 001245689999998877 799


Q ss_pred             EEEEeecCCcceeEEEEE
Q psy10487        337 YTCYAENIRGNASGEISL  354 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L  354 (610)
                      |.|.|.|.+|.+...++|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999999988876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.15  E-value=1e-10  Score=94.95  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=63.2

Q ss_pred             eecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        266 KESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .|....+.+|++++|.|.+.+ .|.|.+.|++++..+....    .        ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--------~~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--------DFNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--------ccCCEEEECCCCHHHCEEEEEEEecc
Confidence            456778899999999999975 7899999999886543211    0        12358999999999999999999999


Q ss_pred             CcceeEEEEE
Q psy10487        345 RGNASGEISL  354 (610)
Q Consensus       345 ~G~~~~~~~L  354 (610)
                      .|...+.+.|
T Consensus        75 ~g~~~~~~~l   84 (85)
T cd05754          75 LDTDEATATL   84 (85)
T ss_pred             CCeEeEEEEE
Confidence            9999988876

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>KOG1259|consensus

Probab=99.15  E-value=4.6e-12  Score=120.70  Aligned_cols=131  Identities=31%  Similarity=0.370  Sum_probs=81.2

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .|++|||++|.|+.++... +  -++.++.|++++|+|..+..  +..+.+|+.|||++|.+..+. +.-..+.+++.|.
T Consensus       285 ~LtelDLS~N~I~~iDESv-K--L~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESV-K--LAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchhhhhhhh-h--hccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence            4566677777776665432 2  25667777777777766653  556667777777777666554 2234456666777


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCH-HHhhcCccccccccccccccccCc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |++|.|..+..  +.+|-+|..||+++|+|.++.. ..+++++.|+++.|.+|.+..+..
T Consensus       359 La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            77776666643  5566666677777776665532 345666666666666666665543

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.15  E-value=4e-10  Score=91.25  Aligned_cols=82  Identities=29%  Similarity=0.470  Sum_probs=64.9

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+............     .....|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~   78 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVR-----KKKWTLILESVVPSDSGKYTCIVENKYGSIN   78 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEcc-----CcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence            35668999999999999999999999999877644321111100     2235799999999999999999999999998


Q ss_pred             EEEEEEc
Q psy10487        350 GEISLDL  356 (610)
Q Consensus       350 ~~~~L~V  356 (610)
                      .++.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05729          79 HTYKVDV   85 (85)
T ss_pred             EEEEEeC
Confidence            8888865

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=7.3e-11  Score=108.21  Aligned_cols=111  Identities=36%  Similarity=0.532  Sum_probs=33.2

Q ss_pred             CCCCCcEEEccCCCCCCCCccccc-CCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFL-GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                      +..++++|+|++|.|..+..  +. .+.+|+.|+|++|.|+.+..  +..+++|+.|++++|+|+.+.......+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            33445555555555555432  32 34555666666666655542  555666666666666666664322234666677


Q ss_pred             cccccccccccCc-ccccCCCcccEEecCCCcccccC
Q psy10487        182 LNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       182 L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      |++++|+|..+.. ..+..+++|+.|++.+||++-..
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            7777776665543 34556677777788888775443

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.13  E-value=4.2e-10  Score=90.89  Aligned_cols=79  Identities=19%  Similarity=0.340  Sum_probs=58.2

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCCccc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc--ceeEE
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG--NASGE  351 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G--~~~~~  351 (610)
                      |++++|.|.+.|.|.|.+.|+++++......... ......   ....+.|.|.+++.+|+|.|+|.|.|..+  ....+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s   77 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPA---TTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK   77 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCC---cEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence            7889999999999999999999776432111000 000011   12356999999999999999999999887  56777


Q ss_pred             EEEEc
Q psy10487        352 ISLDL  356 (610)
Q Consensus       352 ~~L~V  356 (610)
                      +.|+|
T Consensus        78 v~i~V   82 (84)
T cd05861          78 VNITV   82 (84)
T ss_pred             EEEEE
Confidence            87777

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.11  E-value=4.7e-10  Score=92.50  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCcee----eeeeEEEEEecCCCCCeEEEEEee
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ..++.+.+|+++.|.|.+.|.|.|.|.|++++..+........ ..+.+...    .....|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRA-LRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEE-EeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            4577899999999999999999999999998764321111000 00110000    123689999999999999999998


Q ss_pred             cCCcceeEEEEEEc
Q psy10487        343 NIRGNASGEISLDL  356 (610)
Q Consensus       343 N~~G~~~~~~~L~V  356 (610)
                      . .-..++.++|.|
T Consensus        83 t-~~~~~~~~~~~v   95 (95)
T cd05882          83 T-MPVRTAKATVTV   95 (95)
T ss_pred             e-eccccEEEEEEC
Confidence            7 223444555443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.09  E-value=3.5e-10  Score=89.61  Aligned_cols=72  Identities=21%  Similarity=0.391  Sum_probs=54.0

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      +.|.|.+.+ .|.|.+.|+++|..+.....  ........    ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK----KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 68899999999988864321  11111111    12368999999999999999999999999888765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.07  E-value=7.6e-10  Score=89.15  Aligned_cols=70  Identities=21%  Similarity=0.403  Sum_probs=56.5

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .|....+..|+++.|.|.+.+ |.|+|.|++||..+...... ..        ...+.|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r-~~--------~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAK-YL--------LYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCce-EE--------EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            356788899999999999865 78899999999998765321 11        223479999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.04  E-value=9.2e-10  Score=90.11  Aligned_cols=82  Identities=23%  Similarity=0.363  Sum_probs=63.1

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      +..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.....  ....        ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~--------~~~~~L~I~~~~~~D~G~Y~C~a~~~   73 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLL--------VTEDGLLIRSVSPADAGVYTCQSVEH   73 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEE--------EcCCCEEEccCCHHHCEEEEEEEecC
Confidence            45677889999999999988 8899999999987654321  1111        12236999999999999999999876


Q ss_pred             C-cceeEEEEEEcC
Q psy10487        345 R-GNASGEISLDLP  357 (610)
Q Consensus       345 ~-G~~~~~~~L~V~  357 (610)
                      . +...+++.|.|.
T Consensus        74 ~~~~~~~~~~l~V~   87 (89)
T cd04979          74 GFKQTLATYSLNVL   87 (89)
T ss_pred             ccceeEeEEEEEEe
Confidence            5 456778888873

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.02  E-value=1e-09  Score=89.98  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             ceEeecCceEEEEEEEEe-----cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        269 MVIREAGGNVTMSCYVYG-----DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g-----~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ...+.+|+.+.|.|...+     +|.|.+.|+|++.++.......          ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~----------~~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF----------VKGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE----------ecCCEEEEeeCChhhCEEEEEEEEe
Confidence            356788999999998753     3678999999999887544211          1235899999999999999999999


Q ss_pred             CCcceeEEEEEEc
Q psy10487        344 IRGNASGEISLDL  356 (610)
Q Consensus       344 ~~G~~~~~~~L~V  356 (610)
                      ..|.....++..+
T Consensus        74 ~~~~~~~~~t~t~   86 (92)
T cd05757          74 THNGKQYNVTRTI   86 (92)
T ss_pred             cCCCEEEEEEEEE
Confidence            9988766555544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.01  E-value=2.2e-09  Score=88.80  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=59.6

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCcee----eeeeEEEEEecCCCCCeEEEEEee
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      +.++.+.+|+++.|.|.+.+.|.|.+.|++.+..+....... ...+++...    ....+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKK-ALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcc-cccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            467889999999999999999999999997443211100000 000111000    123589999999999999999999


Q ss_pred             cCCcceeEEEEEEc
Q psy10487        343 NIRGNASGEISLDL  356 (610)
Q Consensus       343 N~~G~~~~~~~L~V  356 (610)
                      +..+. ..++.|.|
T Consensus        83 t~~~~-~~~~~l~v   95 (95)
T cd07701          83 TMPVK-TSKAYLTV   95 (95)
T ss_pred             eecCc-cEEEEEEC
Confidence            85433 66777665

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.97  E-value=3.2e-09  Score=86.10  Aligned_cols=80  Identities=23%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CceEEEEEEEEecCCC--eEEEEeCCEEeccCCccc---eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        275 GGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDL---LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      |++++|.|.+.++|.+  .+.|.+++..........   .....   .....+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~---~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQE---HTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccc---cceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            7889999999987655  679998776432111000   00000   113457999999999999999999999999998


Q ss_pred             EEEEEEcC
Q psy10487        350 GEISLDLP  357 (610)
Q Consensus       350 ~~~~L~V~  357 (610)
                      ....|.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            88888873

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.96  E-value=1.2e-09  Score=89.37  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             cceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+.+|+.++|.|.. .|.|.|.+.|++++..+........+.      ....|.|.|.+|+.+|+|.|+|.|+|.+.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~------~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFV------SQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEE------eCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            44668899999999976 689999999999986532111111111      11246999999999999999999999875


Q ss_pred             ce
Q psy10487        347 NA  348 (610)
Q Consensus       347 ~~  348 (610)
                      ..
T Consensus        85 ~~   86 (96)
T cd05727          85 TK   86 (96)
T ss_pred             CC
Confidence            44

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.95  E-value=2.2e-09  Score=86.38  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             eecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        266 KESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+....+.+|++++|.|.+. +.+.+.+.|+|+|..+....              ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeC
Confidence            34455788999999999985 46778899999997654211              1248999999999999999999999


Q ss_pred             Ccce-eEEEEEEc
Q psy10487        345 RGNA-SGEISLDL  356 (610)
Q Consensus       345 ~G~~-~~~~~L~V  356 (610)
                      .|.. +..+.|+|
T Consensus        71 ~~~~~s~~~~i~~   83 (83)
T cd05753          71 SYDYSSEPVSITV   83 (83)
T ss_pred             CceecCCCEEEEC
Confidence            9864 44566554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.6e-10  Score=83.79  Aligned_cols=59  Identities=32%  Similarity=0.468  Sum_probs=28.8

Q ss_pred             CccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcc
Q psy10487         82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP  140 (610)
Q Consensus        82 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~  140 (610)
                      +|++|++++|+|..+++++|.++++|++|+|++|+|..++++.|.++++|++|+|++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444455555555444444444444444444444444443

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.93  E-value=5.9e-09  Score=83.14  Aligned_cols=71  Identities=35%  Similarity=0.645  Sum_probs=58.7

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc-ce
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-NA  348 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~  348 (610)
                      ..+.+|+.++|.|.+.|.|.+.+.|++++..+.....                .+.+.+++.+|.|.|+|.|.|..| ..
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------------~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------------GLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------------EEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------------eeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            6688999999999999999999999999877763321                377788999999999999999665 45


Q ss_pred             eEEEEEEc
Q psy10487        349 SGEISLDL  356 (610)
Q Consensus       349 ~~~~~L~V  356 (610)
                      +.++.|+|
T Consensus        73 s~~~~v~V   80 (80)
T PF13895_consen   73 STSVNVTV   80 (80)
T ss_dssp             EEEEEEEE
T ss_pred             eeeEEeeC
Confidence            66777765

...

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.90  E-value=2.1e-09  Score=103.54  Aligned_cols=100  Identities=16%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-----ecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-----GDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-----g~P~p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|.|.+.+..+... ..+....       ...+....+.+|++++|.|.+.     |.|.|+|+|+|++..+....
T Consensus       108 ~DsG~Y~C~a~N~~~~~~-~~i~L~V-------~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~  179 (227)
T PHA02826        108 IDEGIYICTISSGNICEE-STIRLTF-------DSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD  179 (227)
T ss_pred             HHCEEEEEEEEECCcceE-EEEEEEE-------ecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence            467889999987553321 1121111       1122345677899999999986     34689999999999987544


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      +...  ..      ..+.|.|.+++.+|+|.|+|.|....+
T Consensus       180 r~~~--~~------~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        180 RIQL--RN------NNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CEEE--eC------CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            3211  11      124899999999999999999998753

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.90  E-value=7.3e-09  Score=77.95  Aligned_cols=63  Identities=40%  Similarity=0.666  Sum_probs=51.0

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      +|+.++|.|.+.+.|.+.+.|++++..+..  .. ..       ......|.|.+++..|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~-~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SN-RL-------SASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CC-EE-------ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            488999999999999999999999887761  11 11       12234899999999999999999999875

>KOG1259|consensus

Probab=98.89  E-value=2.5e-10  Score=109.07  Aligned_cols=131  Identities=28%  Similarity=0.381  Sum_probs=110.0

Q ss_pred             CCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEc
Q psy10487         81 LNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL  160 (610)
Q Consensus        81 ~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  160 (610)
                      ..|+.|+|++|.|+.++ ++.+-++.++.|+++.|.|..+..  +..+.+|+.|+|++|.++.+... -.+|-+++.|.|
T Consensus       284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEeeeeh
Confidence            35888999999999986 457888999999999999988864  78899999999999999887653 235788999999


Q ss_pred             cCccccccCHHHhhcCccccccccccccccccCc-ccccCCCcccEEecCCCcccccC
Q psy10487        161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      +.|.|..+  ..+..+-+|..||+++|+|..+.. ..++.++.|+.+.|.+|++....
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99998777  356778899999999999987764 46788999999999999986543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.7e-09  Score=81.50  Aligned_cols=61  Identities=28%  Similarity=0.474  Sum_probs=50.8

Q ss_pred             CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccc
Q psy10487        105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI  165 (610)
Q Consensus       105 ~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l  165 (610)
                      ++|++|+|++|+|..++++.|.++++|++|+|++|.++.+.+..|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3678888888888888888888888888888888888888888888888888888888875

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.88  E-value=4e-09  Score=86.08  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             ecceEeecCceEEEEEE-EEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EEEEEeecC
Q psy10487        267 ESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAENI  344 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~-~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~  344 (610)
                      ...+.+.+|+.+.|.|. ..|.|.|.|.|++++..+...+.        +..+...|+|.|.+|+.+|+| .|.|.|.|.
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~--------Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~   81 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDE--------RVSMGQNGNLYFANVEEQDSHPDYICHAHFP   81 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccc--------cEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence            36778999999999997 69999999999987654322211        112223479999999999999 799999998


Q ss_pred             Ccc
Q psy10487        345 RGN  347 (610)
Q Consensus       345 ~G~  347 (610)
                      +..
T Consensus        82 ~~~   84 (95)
T cd05845          82 GLR   84 (95)
T ss_pred             ccc
Confidence            643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.86  E-value=3.1e-08  Score=81.10  Aligned_cols=88  Identities=18%  Similarity=0.291  Sum_probs=70.9

Q ss_pred             cceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.|.+|+++.|.|.+.+.|+|+ +.|.+++..+......... ........+.+.|.+..++.+|+|.|+|.|.|..+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~-~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVK-SRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeE-EeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            456788999999999999999998 9999998876543332221 11112335778999999999999999999999999


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .++.++.|.|
T Consensus        90 ~~s~tF~l~v   99 (101)
T cd05860          90 SASVTFNVYV   99 (101)
T ss_pred             eEEEEEEEEE
Confidence            9999999887

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.85  E-value=1.7e-08  Score=82.60  Aligned_cols=82  Identities=18%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCE--EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee-cCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQ--VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE-NIR  345 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~  345 (610)
                      .+.+.+|+++.|.|.. +.|.|.+.|++.+.  ......      ..........+.|.|.+++.+|+|.|+|.|. |..
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~------~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~   77 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEV------KTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSF   77 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccc------cccccEEEecCeEEEeeCChhHCEEEEEEEEccCC
Confidence            4567889999999996 58999999998332  211100      0001111233579999999999999999997 577


Q ss_pred             cceeEEEEEEcC
Q psy10487        346 GNASGEISLDLP  357 (610)
Q Consensus       346 G~~~~~~~L~V~  357 (610)
                      |.....++|+|.
T Consensus        78 ~~~~~~~~l~v~   89 (91)
T cd05871          78 SQTLAKYTLHVI   89 (91)
T ss_pred             eEEEEEEEEEEe
Confidence            777888888884

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=9.3e-10  Score=113.08  Aligned_cols=157  Identities=20%  Similarity=0.204  Sum_probs=87.3

Q ss_pred             CccEEEeecCCCCCCCh------hhhcccCCCCccEEEcccCCCcccchhhhcCCCC---CcEEEccCCCCCCCC----c
Q psy10487         56 DIQVLDLNNNKISYLTK------EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI---LVEVDLSDNQIAWLH----Q  122 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~------~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~---L~~LdLs~n~l~~l~----~  122 (610)
                      +++.|+++++.+...+.      ..+.  .+.+|++|+|++|.+.......|..+..   |++|++++|++....    .
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLT--KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHH--hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            46777777766653221      2233  3567777777777766444444444444   777777777665311    1


Q ss_pred             ccccCC-CCCcEEEeeCccccccC----cCcCCCCCCccEEEccCccccccC----HHHhhcCccccccccccccccccC
Q psy10487        123 DTFLGN-DRLKVLYLNGNPITELR----AGQFPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       123 ~~f~~l-~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      ..+..+ ++|+.|+|++|.++...    ...+..+.+|+.|+|++|.+....    ...+..+.+|+.|++++|.+....
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence            233444 66777777777666211    123445566777777777666321    122334456777777777665332


Q ss_pred             c----ccccCCCcccEEecCCCccc
Q psy10487        194 E----SVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       194 ~----~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .    ..+..+++|+.|++++|.+.
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCc
Confidence            1    23344566777777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=98.84  E-value=1.5e-10  Score=119.58  Aligned_cols=168  Identities=28%  Similarity=0.369  Sum_probs=93.2

Q ss_pred             EEEcCCCCCCccCcccC----CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         38 SALCKDANFTALPSTLD----SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        38 ~~~C~~~~l~~lP~~l~----~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      .+...+.+|+.+|..-.    ......||+.|++.+++.+.-.   +..|+.|.|..|.|..|+ .++..+..|+.|||+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~---f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACA---FVSLESLILYHNCIRTIP-EAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHH---HHHHHHHHHHhccceecc-hhhhhhhHHHHhhhc
Confidence            45556667777764321    1345567778888777765432   334555555555555553 345555556666666


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCc----------------
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT----------------  177 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------  177 (610)
                      .|+++.++...+.  --|+.|.+++|+++.++.. ++.+.+|..|+.+.|.|..+++ .++.+.                
T Consensus       130 ~NqlS~lp~~lC~--lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  130 SNQLSHLPDGLCD--LPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             cchhhcCChhhhc--CcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCC
Confidence            6666555543321  2355555555555555442 3344455555555555544422 222222                


Q ss_pred             ------cccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        178 ------ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       178 ------~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                            .|..||+++|+|..++- .|.+|+.|+.|.|.+|++.
T Consensus       206 ~El~~LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  206 EELCSLPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHhCCceeeeecccCceeecch-hhhhhhhheeeeeccCCCC
Confidence                  35556777777776655 4567777777777777763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.80  E-value=1.6e-09  Score=111.23  Aligned_cols=158  Identities=27%  Similarity=0.328  Sum_probs=106.2

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCC---CccEEEcccCCCcc----cchhhhcCC-CCCcEEEccCCCCCCCC----c
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLL---NLQRIYLKNSGIRE----VHRDTFKYL-TILVEVDLSDNQIAWLH----Q  122 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~---~L~~L~L~~n~l~~----i~~~~f~~l-~~L~~LdLs~n~l~~l~----~  122 (610)
                      .+|+.|+|++|.+.......+.  .+.   +|++|++++|.+..    ....++..+ ++|++|+|++|+++...    .
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~--~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLE--SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHH--HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            4788899998888765555554  233   48999998888763    122345566 78899999998887321    2


Q ss_pred             ccccCCCCCcEEEeeCccccccC----cCcCCCCCCccEEEccCccccccCHH----HhhcCccccccccccccccccCc
Q psy10487        123 DTFLGNDRLKVLYLNGNPITELR----AGQFPKLPYLKTIELQHCQIHSVHKD----ALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       123 ~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      ..|..+.+|++|+|++|.++...    ...+..+++|+.|+|++|.+......    .+..+++|+.|++++|.+.+...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            34666778889999888877421    12244557888899988888654332    34556788888998888775322


Q ss_pred             ccc-----cCCCcccEEecCCCccc
Q psy10487        195 SVF-----FPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       195 ~~~-----~~~~~L~~l~l~~N~~~  214 (610)
                      ..+     .....|+.|++.+|.+.
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCC
Confidence            111     12367888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.78  E-value=5.5e-08  Score=76.69  Aligned_cols=67  Identities=18%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             EEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        278 VTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       278 v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      +.|+|.+. |+|.++|+|++++.++.....   . ...+..+...+.|.|.....+|.+.|+|+|.|.++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS---Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc---c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999985 789999999999999965321   1 1122234567789999999999999999999998864

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.76  E-value=2.9e-08  Score=81.26  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=57.7

Q ss_pred             eEeecCceEEEEEEE-E----ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        270 VIREAGGNVTMSCYV-Y----GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~-~----g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      ..+.+|.+..|.|.- .    .++.|++.|+||+.++...........+       .+.|.|.+|..+|+|.|+|+|.|.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-------~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-------STYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-------CCEEEEEEcChhhCEEEEEEEEEe
Confidence            456788999999962 2    4577899999999988755432222111       237999999999999999999999


Q ss_pred             Ccce----eEEEEEEc
Q psy10487        345 RGNA----SGEISLDL  356 (610)
Q Consensus       345 ~G~~----~~~~~L~V  356 (610)
                      +|..    ..++.|.|
T Consensus        78 ~~g~~y~vtr~~~l~v   93 (95)
T cd05897          78 HEGKKYNITRIIKLRI   93 (95)
T ss_pred             eCCEEEEEEEEEEEEE
Confidence            7653    34444444

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.76  E-value=5.4e-08  Score=80.63  Aligned_cols=88  Identities=19%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCcee----eeeeEEEEEecCCCCCeEEEEEee
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ...+.+.+|++++|.|.+.+.|.+.+.|++.+..+........ ..+.+...    .....|+|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRA-LRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccc-cccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            3567789999999999999999999999874332110000000 00000000    123579999999999999999999


Q ss_pred             cCCcceeEEEEEEc
Q psy10487        343 NIRGNASGEISLDL  356 (610)
Q Consensus       343 N~~G~~~~~~~L~V  356 (610)
                      +... .++.+.|.|
T Consensus        83 ~~~~-~~~~~~~~v   95 (95)
T cd05717          83 TMPV-QTAKATVTV   95 (95)
T ss_pred             cCCC-ceEEEEEEC
Confidence            8753 356666654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00410 IG_like Immunoglobulin like

Probab=98.76  E-value=1.2e-07  Score=75.88  Aligned_cols=83  Identities=36%  Similarity=0.600  Sum_probs=63.8

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeC-CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.......... ..     ....|.|.+++..|+|.|+|.+.+..|
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-SG-----SNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-cC-----CeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            345678899999999999988999999998 77665222211111 11     135899999999999999999999998


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .....+.|.|
T Consensus        76 ~~~~~~~l~V   85 (86)
T smart00410       76 SASSTTTLTV   85 (86)
T ss_pred             eEEEEEEEEE
Confidence            8877777765

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.76  E-value=1.2e-07  Score=75.88  Aligned_cols=83  Identities=36%  Similarity=0.600  Sum_probs=63.8

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeC-CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.......... ..     ....|.|.+++..|+|.|+|.+.+..|
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~-~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR-SG-----SNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE-cC-----CeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            345678899999999999988999999998 77665222211111 11     135899999999999999999999998


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .....+.|.|
T Consensus        76 ~~~~~~~l~V   85 (86)
T smart00409       76 SASSTTTLTV   85 (86)
T ss_pred             eEEEEEEEEE
Confidence            8877777765

>PLN03150 hypothetical protein; Provisional

Probab=98.76  E-value=2.4e-08  Score=111.27  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=75.9

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .++.|+|++|.++...+..+.  .|.+|+.|+|++|.+....+..|+.+++|+.|||++|++....+..+..+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            477888888888766666666  677888888888888766666778888888888888888776667777777777777


Q ss_pred             eeCccccccCcCcCCCC-CCccEEEccCcc
Q psy10487        136 LNGNPITELRAGQFPKL-PYLKTIELQHCQ  164 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l-~~L~~L~L~~n~  164 (610)
                      |++|.++...+..+..+ .++..+++.+|.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCc
Confidence            77777776555444332 234455555543

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.75  E-value=2.2e-08  Score=82.14  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEe-ccCCccceee----ccCCce------eeeeeEEEEEecCCCCCeEEE
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVL-HNSSFDLLEE----EEGDAL------FEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l-~~~~~~~~~~----~~~~~~------~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +.+.+|++|+|.|.+.+.+.+.+.|++++... ..........    ...+..      .....+|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45788999999999999999999999876332 2111100000    000000      011247999999999999999


Q ss_pred             EEeecCCcce
Q psy10487        339 CYAENIRGNA  348 (610)
Q Consensus       339 C~a~N~~G~~  348 (610)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999987764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.75  E-value=7.2e-08  Score=77.45  Aligned_cols=78  Identities=19%  Similarity=0.403  Sum_probs=55.2

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc--eeEEEEE
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN--ASGEISL  354 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~L  354 (610)
                      +.|.|.+.| .|.|.|+|+++|..+...........++ ..+...+.|.|.....+|.|.|+|.|.|....  ...+++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDG-KRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCC-CeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 6999999999999886443222222222 22345578999888888999999999998754  3445555


Q ss_pred             Ec
Q psy10487        355 DL  356 (610)
Q Consensus       355 ~V  356 (610)
                      .|
T Consensus        81 ~v   82 (82)
T cd05759          81 DV   82 (82)
T ss_pred             cC
Confidence            43

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.75  E-value=6.4e-09  Score=110.33  Aligned_cols=169  Identities=28%  Similarity=0.403  Sum_probs=91.8

Q ss_pred             cEEEcCCCCCCccCccc--CC-CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPSTL--DS-DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l--~~-~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      ..++..++.++.+|..+  .. +|+.|++++|+|..++... .  .+++|+.|++++|++..+... ...+..|+.|+++
T Consensus       119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~--~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls  194 (394)
T COG4886         119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-R--NLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLS  194 (394)
T ss_pred             eEEecCCcccccCccccccchhhcccccccccchhhhhhhh-h--ccccccccccCCchhhhhhhh-hhhhhhhhheecc
Confidence            34455555555555433  21 4555555555555553111 1  355555555655555555432 1245555555666


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      +|++..++.. ...+..|++|.+++|.+..... .+.++.++..|.+.+|++..+ +..+..+.+++.|++++|+++.+.
T Consensus       195 ~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         195 GNKISDLPPE-IELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             CCccccCchh-hhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeec-cchhccccccceeccccccccccc
Confidence            6655555542 1223345556666553222221 244555666666666666553 344556667777777777777776


Q ss_pred             cccccCCCcccEEecCCCccc
Q psy10487        194 ESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .  +..+.+++.|++++|.+.
T Consensus       272 ~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         272 S--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             c--ccccCccCEEeccCcccc
Confidence            6  556677777777777653

>PLN03210 Resistant to P

Probab=98.70  E-value=1e-07  Score=114.04  Aligned_cols=119  Identities=21%  Similarity=0.307  Sum_probs=70.4

Q ss_pred             cEEEcCCCCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCC-CcccchhhhcCCCCCcEEEccC
Q psy10487         37 KSALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      +.+...+..++.+|..+ +.+|+.|+|.+|.|..+.... .  .+.+|+.|+|+++. +..++  .+..+++|++|+|++
T Consensus       592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSD  666 (1153)
T ss_pred             EEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc-c--cCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecC
Confidence            34555566677777655 457888888888777765443 2  46677777777654 44443  256667777777776


Q ss_pred             CC-CCCCCcccccCCCCCcEEEeeCc-cccccCcCcCCCCCCccEEEccCc
Q psy10487        115 NQ-IAWLHQDTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYLKTIELQHC  163 (610)
Q Consensus       115 n~-l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~n  163 (610)
                      |. +..++ ..+..+.+|+.|+|++| .++.++.. + ++.+|+.|+|++|
T Consensus       667 c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        667 CSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCccccc-hhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCC
Confidence            53 33333 45666667777777664 34444332 1 3455555555544

syringae 6; Provisional

>KOG0532|consensus

Probab=98.69  E-value=1.3e-09  Score=112.82  Aligned_cols=132  Identities=19%  Similarity=0.221  Sum_probs=110.4

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      -+|.|++-+++..+..++. ++|..-...+|+.|++.+++. .+..+..|+.|.|..|.|..++. .+.++..|.+|+|+
T Consensus        53 g~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLS  129 (722)
T ss_pred             cccccccchhhcCCCcccc-ccccchhhhhccccccccCch-HHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhc
Confidence            4578888889999988887 688888889999999999864 45677788899999999998874 67889999999999


Q ss_pred             CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      .|.+..++.. ++.| -|+.|.+++|+++.++ ..++.+..|..||.+.|.|..++..
T Consensus       130 ~NqlS~lp~~-lC~l-pLkvli~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~slpsq  184 (722)
T KOG0532|consen  130 SNQLSHLPDG-LCDL-PLKVLIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSLPSQ  184 (722)
T ss_pred             cchhhcCChh-hhcC-cceeEEEecCccccCC-cccccchhHHHhhhhhhhhhhchHH
Confidence            9999999775 3344 4899999999999995 4567788999999999999887753

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=3.2e-08  Score=110.31  Aligned_cols=109  Identities=19%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG  186 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  186 (610)
                      ++.|+|++|.+....+..|..+.+|+.|+|++|.+.+..+..+..+++|+.|+|++|++....+..+.++.+|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56667777777665556666677777777777776655555566667777777777777666566666777777777777


Q ss_pred             ccccccCcccccCC-CcccEEecCCCcccc
Q psy10487        187 NRLKHLSESVFFPT-PNLKTLSLDGNPWCC  215 (610)
Q Consensus       187 n~l~~~~~~~~~~~-~~L~~l~l~~N~~~c  215 (610)
                      |.+.+..+..+... .++..+++.+|+..|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            76664444333321 234456666665544

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.65  E-value=5.8e-08  Score=73.83  Aligned_cols=63  Identities=37%  Similarity=0.587  Sum_probs=46.0

Q ss_pred             CceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        275 GGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       275 G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      |++++|.|.+ .+.+.+.+.|++++................    .....|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSV----SSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTT----EEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccc----eeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 788889999999987655443222111111    11114999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PLN03210 Resistant to P

Probab=98.63  E-value=2.3e-07  Score=111.06  Aligned_cols=96  Identities=19%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             cEEEcCCCCCCccCccc--CCCccEEEeecCC-CCCCChhhhcccCCCCccEEEcccCC-CcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKDANFTALPSTL--DSDIQVLDLNNNK-ISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~-i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdL  112 (610)
                      ..++..+.++..+|..+  ..+|+.|+|+++. +..++.  +.  .+++|+.|+|.+|. +..+ +..|..+.+|+.|+|
T Consensus       614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls--~l~~Le~L~L~~c~~L~~l-p~si~~L~~L~~L~L  688 (1153)
T PLN03210        614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LS--MATNLETLKLSDCSSLVEL-PSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cc--cCCcccEEEecCCCCcccc-chhhhccCCCCEEeC
Confidence            45777777888887655  3478999998764 666653  33  57788889888875 4444 456788888888888


Q ss_pred             cCC-CCCCCCcccccCCCCCcEEEeeCc
Q psy10487        113 SDN-QIAWLHQDTFLGNDRLKVLYLNGN  139 (610)
Q Consensus       113 s~n-~l~~l~~~~f~~l~~L~~L~Ls~N  139 (610)
                      ++| .+..++...  ++++|+.|+|++|
T Consensus       689 ~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        689 SRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence            874 566655432  4556666666554

syringae 6; Provisional

>KOG1859|consensus

Probab=98.59  E-value=1.4e-09  Score=115.20  Aligned_cols=129  Identities=22%  Similarity=0.330  Sum_probs=101.6

Q ss_pred             ccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccC
Q psy10487         83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH  162 (610)
Q Consensus        83 L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  162 (610)
                      |...+++.|.+..++ .++.-++.|+.|||+.|++....  .+..+.+|++|||++|.++.++.-....+ +|..|.|++
T Consensus       166 L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            445566666666664 56788888999999999998875  57889999999999999998876333333 499999999


Q ss_pred             ccccccCHHHhhcCccccccccccccccccCc-ccccCCCcccEEecCCCcccccC
Q psy10487        163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       163 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      |.++.+.  .+.++.+|+.||+++|.|..... ..++.+..|+.|.|.||++.|.-
T Consensus       242 N~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  242 NALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9998873  46788999999999998876543 34556778889999999998853

>KOG3207|consensus

Probab=98.56  E-value=1.3e-08  Score=102.37  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=111.7

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchh-hhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCc
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD-TFKYLTILVEVDLSDNQIAWLHQ-DTFLGNDRLK  132 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~-~f~~l~~L~~LdLs~n~l~~l~~-~~f~~l~~L~  132 (610)
                      .+++.|||+.|-|..+.+-.--.-.|++|+.|+|+.|.+...... .-..+..|+.|.|+.|.|+.-+- ......++|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            478999999998887765321111688999999999987643221 12356678888899988874322 2345568899


Q ss_pred             EEEeeCccccccCcCcCCCCCCccEEEccCccccccCH-HHhhcCccccccccccccccccCccc------ccCCCcccE
Q psy10487        133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSESV------FFPTPNLKT  205 (610)
Q Consensus       133 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~  205 (610)
                      .|+|.+|....+.......+..|+.|+|++|++..+.. ...+.++.|+.|+++.+.|.++....      ...+++|+.
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            99999886444444445567888999999988877642 24567888888888888888765322      234678888


Q ss_pred             EecCCCccc
Q psy10487        206 LSLDGNPWC  214 (610)
Q Consensus       206 l~l~~N~~~  214 (610)
                      |++..|++.
T Consensus       306 L~i~~N~I~  314 (505)
T KOG3207|consen  306 LNISENNIR  314 (505)
T ss_pred             eecccCccc
Confidence            999888864

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.54  E-value=1.6e-07  Score=73.58  Aligned_cols=74  Identities=32%  Similarity=0.618  Sum_probs=51.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.|...+.......++ ++|.|.+.+.| .+.++|+ +.......        .........+.|.|.++..+|.|.|+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--------~~~~~~~~~~~L~i~~v~~~~~g~y~   70 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--------NSRGSSSSNSTLTISNVTRSDNGTYT   70 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--------EEEEEEEEEEEEEESSCCGGGTEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--------eeeeccceeeEEEEccCCHHhCcEEE
Confidence            36666666666655555 99999999888 8899999 11111000        00112245679999999999999999


Q ss_pred             EEeec
Q psy10487        339 CYAEN  343 (610)
Q Consensus       339 C~a~N  343 (610)
                      |+|.|
T Consensus        71 C~a~N   75 (75)
T PF13927_consen   71 CIASN   75 (75)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99987

...

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.52  E-value=5.4e-07  Score=74.10  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             cceEeecCceEEEEEEEE-----------ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        268 SMVIREAGGNVTMSCYVY-----------GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~-----------g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      ....+.+|+.+.|.|...           ......+.|+|++.........  ..+ +.........|.|..+..+|+|.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~--~~~-~~Ri~~~~~~Lwf~Pa~~eDSG~   84 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEI--IFD-GVRMSKEEDSIWFRPAELQDSGL   84 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcc--ccc-ceeEEEeCCEEEEEeCChhhCeE
Confidence            446788999999999861           1223489999997554433210  000 00112233489999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEc
Q psy10487        337 YTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|++.|........+.|+|
T Consensus        85 Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          85 YTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEECCCCcceEEEEEEEC
Confidence            99999999888777777765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.52  E-value=4.7e-07  Score=75.89  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=59.8

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-----EeccCCc-----cceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-----VLHNSSF-----DLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-----~l~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +.+....+.+|+++.|.|.........+.|+|...     .+.....     ...-...++.....+++|.|++++.+|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            34455678899999999865433334899999632     1111110     0000112333445568999999999999


Q ss_pred             eEEEEEeecCC-cceeEEEEEEc
Q psy10487        335 GEYTCYAENIR-GNASGEISLDL  356 (610)
Q Consensus       335 G~Y~C~a~N~~-G~~~~~~~L~V  356 (610)
                      |.|+|.+.|.. ......+.|.|
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEEEC
Confidence            99999999987 45566666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>KOG3207|consensus

Probab=98.49  E-value=2.5e-08  Score=100.43  Aligned_cols=158  Identities=20%  Similarity=0.242  Sum_probs=88.8

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      ++|+.|+|+.|.+......... +-+.+|+.|.|+.|+|+.-+- ..+..+++|+.|+|..|....+....+.-+..|+.
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~~-~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNTT-LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             ccchhcccccccccCCccccch-hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            3677777777766543332221 135667777777777664322 12345677777777777544344444555667777


Q ss_pred             EEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHH------hhcCccccccccccccccccCc-ccccCCCcccE
Q psy10487        134 LYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDA------LIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKT  205 (610)
Q Consensus       134 L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~  205 (610)
                      |+|++|++-..+. .....++.|+.|+++.|.|..+..-.      ...+.+|+.|++..|+|..+.. ..+..+.+|+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            7777777666542 12445677777777777766653211      2345677777777777765543 11222334444


Q ss_pred             EecCCCcc
Q psy10487        206 LSLDGNPW  213 (610)
Q Consensus       206 l~l~~N~~  213 (610)
                      |....|.+
T Consensus       331 l~~~~n~l  338 (505)
T KOG3207|consen  331 LRITLNYL  338 (505)
T ss_pred             hhcccccc
Confidence            44444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.49  E-value=8.7e-08  Score=101.66  Aligned_cols=150  Identities=29%  Similarity=0.368  Sum_probs=86.3

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCC-CccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~-~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .++.|++.+|.++.+++....   +. +|+.|++++|++..+. ..++.++.|+.|++++|++..++.. ...+..|+.|
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~---~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGL---LKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcccccCcccccc---chhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhhe
Confidence            466666666666666654431   32 6666666666666663 2356666666666666666666542 1245666666


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      ++++|.++.++.. ...+..|+.|.+++|++..+ ...+..+.++..+.+.+|++..+. ..+..+..++.|++.+|.+
T Consensus       192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         192 DLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeecc-chhccccccceeccccccc
Confidence            6666666666552 12334466666666643333 234455566666666666665532 2344555566666666654

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.42  E-value=8.6e-07  Score=70.91  Aligned_cols=71  Identities=20%  Similarity=0.392  Sum_probs=53.9

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..+.+.+|+++.|.|...+. .+.+.|+++|..+..+.+  ..        .....|.|..++.+|+|.|.|.+. +.|-
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r--~~--------~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf   71 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFS--YR--------VGTDGLLILVTSPEHSGTYRCYSE-EEGF   71 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcc--eE--------EeCCCCEEEECCHhhCEEEEEEEe-cCCC
Confidence            45778899999999999885 669999999998865422  11        112258899999999999999986 4454


Q ss_pred             eeE
Q psy10487        348 ASG  350 (610)
Q Consensus       348 ~~~  350 (610)
                      ...
T Consensus        72 ~~~   74 (85)
T cd05872          72 QQL   74 (85)
T ss_pred             eEE
Confidence            433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.41  E-value=4.3e-08  Score=81.60  Aligned_cols=42  Identities=10%  Similarity=-0.012  Sum_probs=38.2

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      +....|.|.+++.+|+|.|+|.|.|..|+.+++++|.|.++|
T Consensus        53 ~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          53 ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence            445689999999999999999999999999999999998764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG1644|consensus

Probab=98.39  E-value=3e-07  Score=83.67  Aligned_cols=102  Identities=33%  Similarity=0.447  Sum_probs=50.9

Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCH-HHhhcCccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESLNLN  185 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~  185 (610)
                      ...+||++|.|..+.  .|..+++|..|.|++|+|+.+.+..-.-+++|..|.|.+|+|..+.. +.+..++.|+.|.+-
T Consensus        44 ~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            334444444444432  24444445555555555555444333334445555555555544421 233445556666666


Q ss_pred             cccccccC---cccccCCCcccEEecCC
Q psy10487        186 GNRLKHLS---ESVFFPTPNLKTLSLDG  210 (610)
Q Consensus       186 ~n~l~~~~---~~~~~~~~~L~~l~l~~  210 (610)
                      +|.+++..   ..++..+++|+.||.+.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            66555433   24556677777777654

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.38  E-value=4e-06  Score=68.77  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEecc-------CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN-------SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      .++++.+|++++|.|.+.+.....+.|++.+..+..       .+.+.......    ....+|+|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEEE
Confidence            567899999999999999988888999986644321       11111111101    1123799999999999999999


Q ss_pred             eec
Q psy10487        341 AEN  343 (610)
Q Consensus       341 a~N  343 (610)
                      +..
T Consensus        81 v~t   83 (95)
T cd05881          81 LYT   83 (95)
T ss_pred             EEc
Confidence            865

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>KOG0531|consensus

Probab=98.37  E-value=7.5e-08  Score=102.55  Aligned_cols=108  Identities=31%  Similarity=0.418  Sum_probs=46.3

Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEE
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE  159 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  159 (610)
                      +.+|+.|++.+|.|..+... +..+.+|++|+|++|+|+.+..  +..+..|+.|++++|.|+.+..  |..+..|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC--Cccchhhhccc
Confidence            33444444444444444321 3344444444444444444432  3334444444444444444432  33344444444


Q ss_pred             ccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       160 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +++|++..+.......+.+|+.+++.+|.+..+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            444444444320023334444444444444433

>KOG1859|consensus

Probab=98.37  E-value=1.5e-08  Score=107.48  Aligned_cols=127  Identities=24%  Similarity=0.365  Sum_probs=104.0

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .|...++++|.+..++. +++  -++.|+.|+|++|+++.+.  .++.++.|++|||+.|++..++.-...+. +|+.|+
T Consensus       165 ~L~~a~fsyN~L~~mD~-SLq--ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE-SLQ--LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHHhHHH-HHH--HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence            57778888998877654 333  3678999999999999986  68999999999999999998876554554 499999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCH-HHhhcCcccccccccccccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  190 (610)
                      |.+|.++.+..  +.+|.+|+.|||++|-|..... ..+..+..|..|.|.+|.+-
T Consensus       239 lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999999875  7789999999999998876533 24567788999999999875

>KOG0531|consensus

Probab=98.37  E-value=6e-08  Score=103.31  Aligned_cols=164  Identities=26%  Similarity=0.319  Sum_probs=120.4

Q ss_pred             cCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCC
Q psy10487         41 CKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA  118 (610)
Q Consensus        41 C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~  118 (610)
                      ++.+.+..+-..+  ..+++.|++.+|.|..+... +.  .+.+|++|+|++|.|..+..  +..+..|+.|++++|.|.
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccc-hh--hhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence            4445555422212  35899999999999988762 22  47899999999999999975  677888999999999999


Q ss_pred             CCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc
Q psy10487        119 WLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF  197 (610)
Q Consensus       119 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  197 (610)
                      .+..  |..+.+|+.+++++|.+..+.. . ...+.+|+.+.+.+|.+..+..  +..+..+..+++..|.++.+..-..
T Consensus       154 ~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~  228 (414)
T KOG0531|consen  154 DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEGLNE  228 (414)
T ss_pred             hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccCccc
Confidence            8864  6668999999999999998876 2 4667889999999999887743  3334455556888888876654221


Q ss_pred             cCCCcccEEecCCCccc
Q psy10487        198 FPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       198 ~~~~~L~~l~l~~N~~~  214 (610)
                      ..+..|+.+++.+|++.
T Consensus       229 ~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRIS  245 (414)
T ss_pred             chhHHHHHHhcccCccc
Confidence            11112677777777764

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.36  E-value=1.8e-06  Score=71.44  Aligned_cols=75  Identities=25%  Similarity=0.363  Sum_probs=58.2

Q ss_pred             ecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        273 EAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..|+.++|.|.+.|. |. +.|+|+++|..+.............++.+...+.|.|......|.|.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999998 64 6899999999887655323334444556677788888887778999999999997654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.35  E-value=8.1e-07  Score=78.05  Aligned_cols=126  Identities=18%  Similarity=0.363  Sum_probs=65.8

Q ss_pred             CChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcC
Q psy10487         70 LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF  149 (610)
Q Consensus        70 l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  149 (610)
                      ++..+|.  +..+|+.+.+.. .+..+...+|.++.+|+.|++.++ +..+....|.+..+|+.+.+.. .+..+....|
T Consensus         3 i~~~~F~--~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    3 IGNNAFY--NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             E-TTTTT--T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             ECHHHHh--CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            3445565  566777777764 577777777777777777777664 7777777777776777777754 6666666677


Q ss_pred             CCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcc
Q psy10487        150 PKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL  203 (610)
Q Consensus       150 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  203 (610)
                      ..+.+|+.+.+..+ +..+....|.+. +|+.+.+.. .+..+....|.++.+|
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77777777777654 666666666665 777776665 4556666666666554

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.35  E-value=5.1e-07  Score=70.91  Aligned_cols=34  Identities=12%  Similarity=-0.043  Sum_probs=32.1

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      +|.|.+++.+|+|.|+|.|.|.+|++...++|.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          42 TLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            7999999999999999999999999999998864

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG4579|consensus

Probab=98.33  E-value=5.1e-08  Score=83.06  Aligned_cols=133  Identities=15%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             cEEEcccCCCcccchh--hhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEcc
Q psy10487         84 QRIYLKNSGIREVHRD--TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ  161 (610)
Q Consensus        84 ~~L~L~~n~l~~i~~~--~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~  161 (610)
                      ..|+|+.|.|-.+...  .+.....|+.++|++|.+..+++..-...+.++.|+|++|.|..++.+ +..++.|+.|+++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR  108 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc
Confidence            3444555554443311  123333455556777777666655444455677777777777777665 6777777777777


Q ss_pred             CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCCc
Q psy10487        162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHL  219 (610)
Q Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l  219 (610)
                      .|.|... +..+..+.+|..|+..+|.+..++-..|.. ......++..++|...|+.
T Consensus       109 ~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  109 FNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cCccccc-hHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcc
Confidence            7777666 444555777888888888877777654421 2223346677788776653

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.32  E-value=4.5e-06  Score=70.64  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             cCceEEEEEEEEecC------CCeEEEEeCCE------E-eccCCccceeecc--CCcee----eeeeEEEEEecCCCCC
Q psy10487        274 AGGNVTMSCYVYGDP------EPTILWLLNGQ------V-LHNSSFDLLEEEE--GDALF----EKSVSITLFNVTDLDA  334 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P------~p~v~W~~~g~------~-l~~~~~~~~~~~~--~~~~~----~~~~~L~I~~v~~~D~  334 (610)
                      .|++++|.|.....|      ...|.|+|...      . +............  ++..+    .....|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            388999999987663      35699999531      1 1011000000000  11111    1235899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |.|.|.+.+..|.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999999999998853

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.31  E-value=6.9e-07  Score=72.20  Aligned_cols=40  Identities=13%  Similarity=0.026  Sum_probs=36.7

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      ..+.|.|.+++.+|+|.|+|.|.|..|+.++.++|.|..+
T Consensus        45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~   84 (85)
T cd05854          45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP   84 (85)
T ss_pred             eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence            4568999999999999999999999999999999988764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.31  E-value=3.6e-06  Score=71.19  Aligned_cols=84  Identities=20%  Similarity=0.312  Sum_probs=56.7

Q ss_pred             cCceEEEEEEEEecC------CCeEEEEeCC-----E-Eecc-CCccceeeccCCcee------eeeeEEEEEecCCCCC
Q psy10487        274 AGGNVTMSCYVYGDP------EPTILWLLNG-----Q-VLHN-SSFDLLEEEEGDALF------EKSVSITLFNVTDLDA  334 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P------~p~v~W~~~g-----~-~l~~-~~~~~~~~~~~~~~~------~~~~~L~I~~v~~~D~  334 (610)
                      .|++|+|.|...+.+      .+.|.|++..     . .+.. ..............+      ....+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999988754      4689999962     1 1111 110000001111011      2346999999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcC
Q psy10487        335 GEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999988888899999884

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG1909|consensus

Probab=98.31  E-value=1.7e-07  Score=92.02  Aligned_cols=111  Identities=19%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             CccEEEeecCCCCCCChhhhccc--CCCCccEEEcccCCCcccchhh-------------hcCCCCCcEEEccCCCCCCC
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVHRDT-------------FKYLTILVEVDLSDNQIAWL  120 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~--~l~~L~~L~L~~n~l~~i~~~~-------------f~~l~~L~~LdLs~n~l~~l  120 (610)
                      .|++||||.|.|..-....|..+  .+..|++|+|.+|.+.......             ...-+.|++++.++|++..-
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            68888888887754333332211  4667778888777776443222             23345567777777766543


Q ss_pred             Cc----ccccCCCCCcEEEeeCcccccc----CcCcCCCCCCccEEEccCcccc
Q psy10487        121 HQ----DTFLGNDRLKVLYLNGNPITEL----RAGQFPKLPYLKTIELQHCQIH  166 (610)
Q Consensus       121 ~~----~~f~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~L~~n~l~  166 (610)
                      +.    ..|...+.|+.+.++.|.|..-    ....|..+++|+.|||.+|-++
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            31    2233344455555555444321    1123334444455555444443

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.29  E-value=2.2e-06  Score=76.44  Aligned_cols=112  Identities=16%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEecc-----C
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHN-----S  304 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~-----~  304 (610)
                      +.+.|.|.+.+..+. .-..+.... ..+|.+...+......+|+.++|.|.+.|. |. ++|.|+++|.....     .
T Consensus        12 D~G~Y~C~~~~~~~~-~~~~~~l~v-~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~   89 (139)
T cd05771          12 DEGTYICSVSTPPHQ-AQQIIQLSV-SEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLS   89 (139)
T ss_pred             HCEEEEEEEEccCcc-eeeEEEEEE-ecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccC
Confidence            678899987554332 222233322 357888777766666688999999999986 54 48999999864221     1


Q ss_pred             Ccc-ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        305 SFD-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       305 ~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ... .....+.++.+..++.|.+..-...+.+.|+|++.+..
T Consensus        90 ~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          90 NVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            111 11233455567778899987666666779999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.29  E-value=5.8e-07  Score=68.69  Aligned_cols=38  Identities=13%  Similarity=-0.034  Sum_probs=32.0

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...+.|.|.++..+|+|.|+|+|+|+.|..+.+..+.+
T Consensus        28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863          28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            34568999999999999999999999998777666543

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.28  E-value=6.8e-06  Score=70.34  Aligned_cols=91  Identities=20%  Similarity=0.300  Sum_probs=55.5

Q ss_pred             eecceEeecCceEEEEEEEEec----CCCeEEEEeCCE------EeccCCccceee-cc----CCce-----eeeeeEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGD----PEPTILWLLNGQ------VLHNSSFDLLEE-EE----GDAL-----FEKSVSIT  325 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~----P~p~v~W~~~g~------~l~~~~~~~~~~-~~----~~~~-----~~~~~~L~  325 (610)
                      .+..+.+..|+.++|.|.....    +...|.|.+...      .+......+.+. ..    ++..     .....+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            3456788899999999998763    346899954211      011010001110 00    0000     13446899


Q ss_pred             EEecCCCCCeEEEEEeecCCcce--eEEEEEEc
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGNA--SGEISLDL  356 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V  356 (610)
                      |.+++.+|.|.|+|.+.|.-+..  ...+.|.|
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            99999999999999999986643  34455543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.28  E-value=7.7e-06  Score=65.54  Aligned_cols=68  Identities=22%  Similarity=0.355  Sum_probs=49.0

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      +.|.|.+.| .|.+.|+|++++..+.... . ......++.+...+.|.+......|.+.|+|+|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~-~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-L-KEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-e-eEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999976 5999999999999886433 1 112222234556677887666666778999999998764

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.27  E-value=2.2e-06  Score=70.24  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=54.2

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.+...+. ..+.+|++|+|.|... .+...+.|+++|........     ..    ....+.+.|.+|+.+|+|.|+|.
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~-----~~----~~~~~~f~i~~v~~~~~G~Y~C~   71 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP-----PE----PQNKAKFFIPSMKREHAGRYRCY   71 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc-----CC----CceeEEEEccCCChhHCEEEEEE
Confidence            55555554 4678999999999885 67788999999875332110     00    12345899999999999999999


Q ss_pred             eecC
Q psy10487        341 AENI  344 (610)
Q Consensus       341 a~N~  344 (610)
                      +.|.
T Consensus        72 ~~~~   75 (91)
T cd05751          72 YRSG   75 (91)
T ss_pred             EECC
Confidence            9986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG1644|consensus

Probab=98.26  E-value=1.1e-06  Score=80.03  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=100.7

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .=+.++|++.+|..+..-..   -+.+...++|++|.+..+.  .|..+.+|.+|.|++|+|..|.+..-..+++|..|.
T Consensus        20 ~e~e~~LR~lkip~ienlg~---~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGA---TLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccccccchhhccc---cccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence            45678888888877664111   3557889999999998875  488999999999999999999998777889999999


Q ss_pred             eeCccccccCc-CcCCCCCCccEEEccCccccccCH---HHhhcCccccccccccc
Q psy10487        136 LNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLNLNGN  187 (610)
Q Consensus       136 Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n  187 (610)
                      |.+|.|..+.. .-+..+++|+.|.+-+|.+.....   ..+..+++|+.||.+.-
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99999888654 346678999999999998876532   23456788998887653

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.25  E-value=1.2e-06  Score=68.54  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=33.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|+++.+++|.|
T Consensus        37 ~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          37 DDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            4568999999999999999999999999999988764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.25  E-value=5.8e-06  Score=69.12  Aligned_cols=82  Identities=20%  Similarity=0.322  Sum_probs=52.0

Q ss_pred             CceEEEEEEEEecCC---CeEEEEeCCE--EeccCCccce----eec--cCCcee------eeeeEEEEEecCCCCCeEE
Q psy10487        275 GGNVTMSCYVYGDPE---PTILWLLNGQ--VLHNSSFDLL----EEE--EGDALF------EKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       275 G~~v~l~C~~~g~P~---p~v~W~~~g~--~l~~~~~~~~----~~~--~~~~~~------~~~~~L~I~~v~~~D~G~Y  337 (610)
                      |++++|.|...+...   ..+.|++...  .+........    ...  .++..+      ....+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            688999999863322   3688988542  1111000000    000  011111      1235899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.+.|..|..+..+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888888888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.25  E-value=3.5e-06  Score=69.16  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             CceEEEEEEEEecCCCeEEEEeCCEEeccCC-------cccee--eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-------FDLLE--EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~-------~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      |++|+|.|.........|.|+++........       .....  ...++......++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            7899999998876777899999653321110       00000  00112223345799999999999999999999887


Q ss_pred             cc-eeEEEEEEc
Q psy10487        346 GN-ASGEISLDL  356 (610)
Q Consensus       346 G~-~~~~~~L~V  356 (610)
                      |. ....+.|.|
T Consensus        81 ~~~~~~~~~l~v   92 (92)
T cd05741          81 GVTENAKFFLRV   92 (92)
T ss_pred             CcEEEEEEEEEC
Confidence            54 455666654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.23  E-value=8e-06  Score=69.36  Aligned_cols=85  Identities=14%  Similarity=0.293  Sum_probs=55.4

Q ss_pred             cCceEEEEEEEEecC------------CCeEEEEeC--CEE---eccC-Cccceeecc-CCcee------eeeeEEEEEe
Q psy10487        274 AGGNVTMSCYVYGDP------------EPTILWLLN--GQV---LHNS-SFDLLEEEE-GDALF------EKSVSITLFN  328 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P------------~p~v~W~~~--g~~---l~~~-~~~~~~~~~-~~~~~------~~~~~L~I~~  328 (610)
                      .|++++|.|......            .+.|.|+|-  |..   +... ...+...+. ++..+      ....+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987543            468999983  211   1111 100000000 01111      1346999999


Q ss_pred             cCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        329 VTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      ++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998888888888888753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.22  E-value=2.7e-07  Score=75.15  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=33.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        51 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          51 SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            4557999999999999999999999999999888765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.21  E-value=2.7e-06  Score=66.09  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|+++++++|.|
T Consensus        35 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          35 KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4557899999999999999999999999999888754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.21  E-value=2e-06  Score=66.90  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=33.6

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..++.|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus        33 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          33 NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            45678999999999999999999999999988877654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.20  E-value=1.7e-06  Score=68.00  Aligned_cols=34  Identities=15%  Similarity=-0.101  Sum_probs=31.7

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .|.|.+++.+|+|.|+|.|.|..|+++.+++|.|
T Consensus        42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          42 CLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            6999999999999999999999999999988864

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.19  E-value=5.4e-06  Score=70.47  Aligned_cols=81  Identities=22%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCCE---E---eccCCccceeeccCCcee-----eeeeEEEEEecCCCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ---V---LHNSSFDLLEEEEGDALF-----EKSVSITLFNVTDLD  333 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~---~---l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D  333 (610)
                      ..+..+.+.+|++++|.|.+.+.+.+.+.|++...   .   +....... ....++...     .....|.|.+++.+|
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGE-EKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCC-cccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            45667889999999999999988888999998431   1   00000000 000011111     123589999999999


Q ss_pred             CeEEEEEeecCCc
Q psy10487        334 AGEYTCYAENIRG  346 (610)
Q Consensus       334 ~G~Y~C~a~N~~G  346 (610)
                      +|.|.|.+.+..+
T Consensus        82 sG~Y~C~~~~~~~   94 (109)
T cd04983          82 SAVYFCALSESGG   94 (109)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999987653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4579|consensus

Probab=98.18  E-value=1.7e-07  Score=79.92  Aligned_cols=134  Identities=16%  Similarity=0.242  Sum_probs=101.3

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .+..|+|++++|-.+........+...|+..+|++|.+...++..-...+.++.|+|++|.|++++.+ |..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            56778888888877665443323566788889999999998876556777899999999999999877 99999999999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      ++.|.+...+.- +..|.+|..|+..+|.+..++-+.|- -..+-..++.++.+.+-
T Consensus       107 l~~N~l~~~p~v-i~~L~~l~~Lds~~na~~eid~dl~~-s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  107 LRFNPLNAEPRV-IAPLIKLDMLDSPENARAEIDVDLFY-SSLPALIKLGNEPLGDE  161 (177)
T ss_pred             cccCccccchHH-HHHHHhHHHhcCCCCccccCcHHHhc-cccHHHHHhcCCccccc
Confidence            999999877653 44588899999999999988766432 22333345555555443

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.17  E-value=1.7e-06  Score=69.49  Aligned_cols=40  Identities=13%  Similarity=0.057  Sum_probs=36.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      ..+.|.|.+++..|+|.|+|.|+|.+++...++.|+|..+
T Consensus        45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p   84 (85)
T cd05853          45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP   84 (85)
T ss_pred             CCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence            4568999999999999999999999999999999998864

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.17  E-value=5.9e-07  Score=73.15  Aligned_cols=39  Identities=26%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ..|.|.++..+|+|.|+|.|.|..|+.+..+.|.|.+.|
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P   85 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP   85 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence            579999999999999999999999999999999988643

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.17  E-value=2.4e-05  Score=62.74  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=50.4

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCC-ceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGD-ALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      +.|.|.+.| +|.+.|+|+++|..+.....  ....+++ +.+..++.|.|......|...|+|+|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~--~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT--SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce--eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999986 59999999999998865432  2222222 35566778888766777788999999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.15  E-value=2.1e-06  Score=66.35  Aligned_cols=35  Identities=11%  Similarity=-0.082  Sum_probs=29.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      +..|.|.++..+|+|.|+|.|.|..|+.+....+.
T Consensus        33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864          33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            45799999999999999999999999777655543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.14  E-value=2.9e-06  Score=66.54  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=33.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|+.+..++|.|
T Consensus        38 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          38 SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            4568999999999999999999999999999888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.14  E-value=1.6e-05  Score=67.57  Aligned_cols=84  Identities=18%  Similarity=0.353  Sum_probs=54.9

Q ss_pred             cCceEEEEEEEEecC----------CCeEEEEeC--CEEec--cCCccce-eecc--CCcee------eeeeEEEEEecC
Q psy10487        274 AGGNVTMSCYVYGDP----------EPTILWLLN--GQVLH--NSSFDLL-EEEE--GDALF------EKSVSITLFNVT  330 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P----------~p~v~W~~~--g~~l~--~~~~~~~-~~~~--~~~~~------~~~~~L~I~~v~  330 (610)
                      .|++++|.|.....+          ...|.|+|.  +....  ....... ....  ++..+      .....|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            388999999997654          256999994  22211  0000000 0000  11011      133689999999


Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        331 DLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      .+|+|.|.|.+....+..+..+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999977788888888884

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.13  E-value=1.7e-05  Score=68.13  Aligned_cols=90  Identities=22%  Similarity=0.395  Sum_probs=54.2

Q ss_pred             ecceEeecCceEEEEEEEEecC----CCeEEEEeC----CEE--eccCCccceeecc----CCc-----eeeeeeEEEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDP----EPTILWLLN----GQV--LHNSSFDLLEEEE----GDA-----LFEKSVSITLF  327 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~----g~~--l~~~~~~~~~~~~----~~~-----~~~~~~~L~I~  327 (610)
                      +..+.+.+|++++|.|.....+    ...|.|++.    +..  +............    ++.     .......|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            5677889999999999986543    246999751    211  1100000000000    000     00124579999


Q ss_pred             ecCCCCCeEEEEEeecCCcce--eEEEEEEc
Q psy10487        328 NVTDLDAGEYTCYAENIRGNA--SGEISLDL  356 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V  356 (610)
                      +++.+|+|.|+|.+.|..+..  ...+.|.|
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            999999999999999977642  34555543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.12  E-value=1.5e-05  Score=66.24  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=51.9

Q ss_pred             ceEEEEEEEEecC---CCeEEEEeCCEE----eccC--Cccceeecc--CCceee----eeeEEEEEecCCCCCeEEEEE
Q psy10487        276 GNVTMSCYVYGDP---EPTILWLLNGQV----LHNS--SFDLLEEEE--GDALFE----KSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       276 ~~v~l~C~~~g~P---~p~v~W~~~g~~----l~~~--~~~~~~~~~--~~~~~~----~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      ++|+|.|...+.+   ...|.|+|....    +...  .........  ++..+.    ....|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987754   447999995421    1000  000000000  000011    346999999999999999999


Q ss_pred             eec-CCcceeEEEEEEc
Q psy10487        341 AEN-IRGNASGEISLDL  356 (610)
Q Consensus       341 a~N-~~G~~~~~~~L~V  356 (610)
                      +.+ ..|...+.+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6788888888877

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.12  E-value=3.1e-06  Score=69.26  Aligned_cols=36  Identities=14%  Similarity=-0.039  Sum_probs=32.7

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|.|+|.|.|+.|....++.|.|
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            347899999999999999999999999999888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.12  E-value=2.2e-06  Score=104.26  Aligned_cols=78  Identities=23%  Similarity=0.534  Sum_probs=69.5

Q ss_pred             ccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccC---CCCCCCCCCCCccCCCcccccccccccC
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL---YSHPLSCTEPGMLQTKHWDDVKAQEFAC  259 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l---~~~~~~C~a~~~l~g~~~~~v~~~~~~c  259 (610)
                      ||++|+|+.++...|..+.+|+.|+|++|+|.|||++.||..|++..+.   ....+.|..|..++++.+.++...++.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            6889999999999999999999999999999999999999999987653   3456889999999999999998887777


Q ss_pred             C
Q psy10487        260 P  260 (610)
Q Consensus       260 ~  260 (610)
                      .
T Consensus        81 ~   81 (2740)
T TIGR00864        81 D   81 (2740)
T ss_pred             C
Confidence            5

Note: this model has been restricted to the amino half because for technical reasons.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.10  E-value=3.3e-06  Score=65.21  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        33 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          33 DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4567999999999999999999999999998887754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.09  E-value=9.5e-06  Score=69.13  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEec----cCCccceee---ccCCcee----eeeeEEEEEecCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLH----NSSFDLLEE---EEGDALF----EKSVSITLFNVTD  331 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l~----~~~~~~~~~---~~~~~~~----~~~~~L~I~~v~~  331 (610)
                      ..|..+.+.+|++++|.|.+.+ +.+.+.|+|..  ....    .........   ..++...    .....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            4567788999999999999988 77899999842  1110    000000000   0010000    1235899999999


Q ss_pred             CCCeEEEEEeecCCc
Q psy10487        332 LDAGEYTCYAENIRG  346 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G  346 (610)
                      +|+|.|.|.+.+..|
T Consensus        82 ~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          82 EDSAVYLCASSLGGG   96 (110)
T ss_pred             hhCEEEEEEeeCCCC
Confidence            999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.09  E-value=3.1e-06  Score=68.43  Aligned_cols=41  Identities=10%  Similarity=0.072  Sum_probs=36.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus        44 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p   84 (85)
T cd04970          44 DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP   84 (85)
T ss_pred             cccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence            34668999999999999999999999999999999988764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.08  E-value=4.3e-06  Score=65.75  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=33.7

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        37 ~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          37 PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            34567999999999999999999999999998888866

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.07  E-value=9.1e-06  Score=71.29  Aligned_cols=117  Identities=21%  Similarity=0.385  Sum_probs=76.8

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      +|+.+.+.. .+..+....|.  ++.+|+.+.+.++ +..+...+|.++.+|+.+.+.+ .+..+....|....+|+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhcc--ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            688888874 68889999998  7889999999875 9999999999998999999976 78888888999999999999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE  180 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (610)
                      +..+ +..+....|.+. .|+.+.+.. .+..+....|.++.+|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9876 888888889997 999999876 77778778888776663

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.07  E-value=5.6e-06  Score=65.28  Aligned_cols=38  Identities=13%  Similarity=0.178  Sum_probs=34.2

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus        39 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867          39 SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            45689999999999999999999999999998888763

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.05  E-value=3.3e-05  Score=66.46  Aligned_cols=91  Identities=22%  Similarity=0.359  Sum_probs=54.4

Q ss_pred             eecceEeecCceEEEEEEEEecC----CCeEEEEeCCE------EeccCCccceee-ccC----Cce-----eeeeeEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP----EPTILWLLNGQ------VLHNSSFDLLEE-EEG----DAL-----FEKSVSIT  325 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~g~------~l~~~~~~~~~~-~~~----~~~-----~~~~~~L~  325 (610)
                      .|..+.+.+|++++|.|......    ...+.|++...      .+.......... ..+    +..     ......|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35677888999999999986532    25699987321      111000000000 000    000     01236899


Q ss_pred             EEecCCCCCeEEEEEeecCCcce--eEEEEEEc
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGNA--SGEISLDL  356 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V  356 (610)
                      |.+++.+|+|.|.|.+.|.-+..  ..++.|.|
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            99999999999999999876542  23455543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG4658|consensus

Probab=98.05  E-value=3e-06  Score=97.02  Aligned_cols=139  Identities=22%  Similarity=0.288  Sum_probs=110.9

Q ss_pred             CCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCC--CcccchhhhcCCCCCcEEEccCCC-CCC
Q psy10487         44 ANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG--IREVHRDTFKYLTILVEVDLSDNQ-IAW  119 (610)
Q Consensus        44 ~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~--l~~i~~~~f~~l~~L~~LdLs~n~-l~~  119 (610)
                      .++.++|... ...++.+.+.+|.+..+....    ..++|+.|-+..|.  +..+....|..++.|+.|||++|. +..
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC----CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            4666777544 347899999999988777544    45589999999996  788888889999999999999875 444


Q ss_pred             CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccc
Q psy10487        120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR  188 (610)
Q Consensus       120 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  188 (610)
                      + |..++.+-+|++|+|++..+.+++. .+.+|..|.+|++..+.-....+..+..+.+|+.|.+....
T Consensus       587 L-P~~I~~Li~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  587 L-PSSIGELVHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             C-ChHHhhhhhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            4 4678899999999999999998866 58889999999998876544546666778999999887654

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.04  E-value=1e-06  Score=73.28  Aligned_cols=35  Identities=17%  Similarity=-0.067  Sum_probs=31.8

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      +.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            57999999999999999999999999998887754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.02  E-value=4.6e-05  Score=62.65  Aligned_cols=81  Identities=23%  Similarity=0.394  Sum_probs=52.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+......   ++.++|.|.+.|. |.. .++|.++|..............++++.+...+.|.|..   .|.+.|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARY   75 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEE
Confidence            566665554332   6789999999996 544 89999999643332221222334444556666777654   478999


Q ss_pred             EEEeecCCc
Q psy10487        338 TCYAENIRG  346 (610)
Q Consensus       338 ~C~a~N~~G  346 (610)
                      +|++.+..-
T Consensus        76 tC~V~H~~~   84 (93)
T cd07698          76 SCRVEHSGL   84 (93)
T ss_pred             EEEEEeCCC
Confidence            999987653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.00  E-value=8e-06  Score=64.01  Aligned_cols=38  Identities=5%  Similarity=-0.073  Sum_probs=33.5

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      +....|.|.+++.+|+|.|+|.|.|..|+++..+.|.|
T Consensus        37 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          37 ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            34568999999999999999999999999998887754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.00  E-value=5.7e-05  Score=64.12  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=34.6

Q ss_pred             eeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       321 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      ..+|.|.+++.+|+|.|.|.+.+.......++.|.|..
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            46999999999999999999999998899999998853

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.00  E-value=3.8e-05  Score=63.42  Aligned_cols=81  Identities=22%  Similarity=0.344  Sum_probs=55.2

Q ss_pred             ceeeeecceEeecCceEEEEEEEEe-cCCCe--EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYG-DPEPT--ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EY  337 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~--v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y  337 (610)
                      .+...+....+.+|+.++|.|.+.| .|.+.  |.|++++..+.......    ..........+|.+. +..+|.| .|
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~-~~r~D~g~~~   77 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITIT-VDREDHGANF   77 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEe-cchhhCCcEE
Confidence            3455566666789999999999975 68886  79999999886543211    001112344567765 4556655 89


Q ss_pred             EEEeecCCcc
Q psy10487        338 TCYAENIRGN  347 (610)
Q Consensus       338 ~C~a~N~~G~  347 (610)
                      +|+|++..+.
T Consensus        78 sC~A~l~l~~   87 (100)
T cd05755          78 SCETELDLRP   87 (100)
T ss_pred             EEEEEeccCc
Confidence            9999987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.99  E-value=4.4e-05  Score=61.14  Aligned_cols=69  Identities=20%  Similarity=0.384  Sum_probs=50.0

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ++|.|.+.| +|...|+|++||..+..... .......++.+..++.|.+..-...|...|+|+|.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~-~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY-LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCcee-eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999986 78889999999999764332 1222233445667788888765566677999999987643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.99  E-value=6.9e-06  Score=63.41  Aligned_cols=35  Identities=14%  Similarity=0.006  Sum_probs=31.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|.++.+.+|
T Consensus        34 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          34 PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            35689999999999999999999999999887776

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.99  E-value=1.7e-06  Score=71.56  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|..+..++|.|.
T Consensus        55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          55 EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            344579999999999999999999999999999988775

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.99  E-value=8.3e-06  Score=63.24  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=32.9

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|..+....+.|
T Consensus        33 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          33 NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            34568999999999999999999999999888777654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=97.98  E-value=8.8e-06  Score=64.18  Aligned_cols=38  Identities=5%  Similarity=-0.007  Sum_probs=33.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .++.|.|.+++.+|+|.|+|.|+|..|.+...+.|.|+
T Consensus        39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868          39 DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            34578999999999999999999999999999888763

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.98  E-value=9.2e-06  Score=63.87  Aligned_cols=34  Identities=12%  Similarity=-0.090  Sum_probs=31.6

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .|.|.+++.+|+|.|+|.|.|..|++...++|.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          42 CLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            6999999999999999999999999999888754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.98  E-value=1.6e-06  Score=71.23  Aligned_cols=35  Identities=9%  Similarity=-0.070  Sum_probs=31.5

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+.|.|.++..+|+|.|+|.|+|..|..+..+.|+
T Consensus        58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   92 (92)
T cd05747          58 KSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT   92 (92)
T ss_pred             eeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence            46899999999999999999999999998877763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=97.97  E-value=8.9e-06  Score=64.04  Aligned_cols=38  Identities=11%  Similarity=0.020  Sum_probs=34.0

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        38 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          38 VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            44578999999999999999999999999998888765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.97  E-value=8.6e-06  Score=66.27  Aligned_cols=37  Identities=19%  Similarity=0.042  Sum_probs=33.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          51 SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            4578999999999999999999999999999888865

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.96  E-value=6.7e-05  Score=62.21  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             eeEEEEEecCCCCCeEEEEEeec-CCcceeEEEEEEc
Q psy10487        321 SVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLDL  356 (610)
Q Consensus       321 ~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~L~V  356 (610)
                      .++|.|.+++.+|+|.|+|.+.| ..|..++.+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            37999999999999999999999 7888888988887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.96  E-value=7.4e-05  Score=59.19  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=51.6

Q ss_pred             EEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEE
Q psy10487        278 VTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLD  355 (610)
Q Consensus       278 v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~  355 (610)
                      +.|.|.+.| .|.+.|+|++++.++.....  .....+ ..+...+.|.|..-...|...|+|+|.|..-. ......|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~--~~~~~~-~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKST--VEETWS-RMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCccc--ceeccC-CCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            689999965 69999999999999865421  111111 12355678888666666666899999997532 34556665


Q ss_pred             c
Q psy10487        356 L  356 (610)
Q Consensus       356 V  356 (610)
                      |
T Consensus        79 V   79 (82)
T cd05883          79 V   79 (82)
T ss_pred             E
Confidence            5

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.96  E-value=2.4e-05  Score=66.63  Aligned_cols=94  Identities=21%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             eeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCE-----Eec-c-CCccc-eeecc--CCceee-----eeeEEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQ-----VLH-N-SSFDL-LEEEE--GDALFE-----KSVSITL  326 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~-----~l~-~-~~~~~-~~~~~--~~~~~~-----~~~~L~I  326 (610)
                      +...+..+.+.+|+++.|.|... ......+.|++...     .+. . ..... .....  ++..+.     ...+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            34457788999999999999998 55667899999322     111 0 00000 00000  111111     1347999


Q ss_pred             EecCCCCCeEEEEEeecC-CcceeEEEEEEc
Q psy10487        327 FNVTDLDAGEYTCYAENI-RGNASGEISLDL  356 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~-~G~~~~~~~L~V  356 (610)
                      .+++.+|+|.|.|.+... .+.....+.|.|
T Consensus        84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999999999887 333445555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.95  E-value=3e-05  Score=64.34  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             ecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCc----cceeeccC----Ccee-eeeeEEEEEecCCCCCeEEEEEee
Q psy10487        273 EAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSF----DLLEEEEG----DALF-EKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       273 ~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~----~~~~~~~~----~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ..|++|+|.|.... .....+.|++....+.....    ........    +..+ ...++|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36999999998754 45567999997543322111    11111111    1111 123689999999999999999999


Q ss_pred             cCCcce-eEEEEEEc
Q psy10487        343 NIRGNA-SGEISLDL  356 (610)
Q Consensus       343 N~~G~~-~~~~~L~V  356 (610)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            988764 56777765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=97.95  E-value=4.1e-06  Score=66.23  Aligned_cols=34  Identities=12%  Similarity=-0.181  Sum_probs=30.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .+.|.|.+++.+|+|.|+|+|+|..|+++....+
T Consensus        43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~   76 (79)
T cd05855          43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA   76 (79)
T ss_pred             EEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence            4579999999999999999999999998877655

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=97.95  E-value=3e-06  Score=70.52  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=31.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            357999999999999999999999999888777653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.93  E-value=2.2e-05  Score=66.08  Aligned_cols=76  Identities=24%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             EeecCceEEEEEEEEec-CCCeEEEEeCCEE-----ecc-CCcc-c-eeeccCCcee-----eeeeEEEEEecCCCCCeE
Q psy10487        271 IREAGGNVTMSCYVYGD-PEPTILWLLNGQV-----LHN-SSFD-L-LEEEEGDALF-----EKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~-----l~~-~~~~-~-~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~  336 (610)
                      .+.+|++++|.|.+.+. +...+.|++....     +.. .... . .....++...     .....|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57789999999999886 7778999984321     110 0000 0 0000011001     123489999999999999


Q ss_pred             EEEEeecCCc
Q psy10487        337 YTCYAENIRG  346 (610)
Q Consensus       337 Y~C~a~N~~G  346 (610)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998775

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.93  E-value=2.1e-06  Score=72.95  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             ccceeeeeee-eccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        422 EKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       422 ~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      .+.|.|.++. .+|.|.|+|.|.|..|.+++..+|.+.+.|
T Consensus        68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            3579999997 589999999999999999999999888754

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.92  E-value=1.3e-05  Score=63.89  Aligned_cols=35  Identities=9%  Similarity=-0.223  Sum_probs=30.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+.|.|.+++.+|+|.|+|+|.|..|+++....+.
T Consensus        45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          45 HGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            44799999999999999999999999988876653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.92  E-value=8.5e-05  Score=60.49  Aligned_cols=72  Identities=28%  Similarity=0.437  Sum_probs=48.4

Q ss_pred             CceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        275 GGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       275 G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      |+.+.+.|.+ .|+|+|.|+|+.++..+...... ......++.+...+.|.+..-...+...++|.|.|..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTT-QSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEE-EEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeee-eeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999977 57899999999999887221111 112222334455567887655555667899999987644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.92  E-value=1.1e-05  Score=65.95  Aligned_cols=39  Identities=13%  Similarity=0.067  Sum_probs=35.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+
T Consensus        45 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          45 QTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence            345799999999999999999999999999999988875

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.92  E-value=7.6e-05  Score=58.59  Aligned_cols=68  Identities=26%  Similarity=0.329  Sum_probs=48.5

Q ss_pred             EEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        278 VTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       278 v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ++|.|.+.|. |+ ..++|++||..+...........++++.+..++.|.|......+...|+|++....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999986 54 58999999987543322211222345567778889887777777889999997654

>KOG1909|consensus

Probab=97.91  E-value=4.4e-06  Score=82.31  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             CCccEEEeecCCCCCCChh----hhcccCCCCccEEEcccCCCc----cc------chhhhcCCCCCcEEEccCCCCCCC
Q psy10487         55 SDIQVLDLNNNKISYLTKE----AFKSIGLLNLQRIYLKNSGIR----EV------HRDTFKYLTILVEVDLSDNQIAWL  120 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~----~~~~~~l~~L~~L~L~~n~l~----~i------~~~~f~~l~~L~~LdLs~n~l~~l  120 (610)
                      ..++.|+|++|.|..--..    .+.  ..++|+..++++--..    ++      -..++.+.++|++||||+|.+..-
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~--~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLA--SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHh--hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            4789999999988642222    233  4557777777653211    11      134567778999999999988654


Q ss_pred             Ccc----cccCCCCCcEEEeeCccccccCcC-------------cCCCCCCccEEEccCccccccCH----HHhhcCccc
Q psy10487        121 HQD----TFLGNDRLKVLYLNGNPITELRAG-------------QFPKLPYLKTIELQHCQIHSVHK----DALIHLTAL  179 (610)
Q Consensus       121 ~~~----~f~~l~~L~~L~Ls~N~l~~l~~~-------------~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L  179 (610)
                      ...    .+.....|++|+|++|.+......             ....-++|+.+...+|++-....    ..|...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            333    235568899999999987653322             23345789999999999877654    356667899


Q ss_pred             ccccccccccccc----CcccccCCCcccEEecCCCcccc
Q psy10487        180 ESLNLNGNRLKHL----SESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       180 ~~L~L~~n~l~~~----~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      +.+.++.|.|..-    ....|..+++|+.|+|.+|.|+-
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            9999999988632    23457788999999999998853

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.90  E-value=7.3e-05  Score=63.24  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CceEEEEEEEEecC-------CCeEEEEeCC-----EEe---ccCCccceeeccCCc--ee------eeeeEEEEEecCC
Q psy10487        275 GGNVTMSCYVYGDP-------EPTILWLLNG-----QVL---HNSSFDLLEEEEGDA--LF------EKSVSITLFNVTD  331 (610)
Q Consensus       275 G~~v~l~C~~~g~P-------~p~v~W~~~g-----~~l---~~~~~~~~~~~~~~~--~~------~~~~~L~I~~v~~  331 (610)
                      |++++|.|...-.|       .+.|.|.+-.     ...   ...+..........+  .+      ....+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78899999976433       3789999841     111   001100001111111  11      1346999999999


Q ss_pred             CCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        332 LDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|+|.|.|.+.......+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999977677888888874

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.90  E-value=4.3e-05  Score=63.69  Aligned_cols=86  Identities=23%  Similarity=0.325  Sum_probs=57.5

Q ss_pred             CCceeeeecce-EeecCceEEEEEEEEec-C-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMV-IREAGGNVTMSCYVYGD-P-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~-~v~~G~~v~l~C~~~g~-P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.+.+... ....++.++|.|.+.|. | ...|+|++||..+...........+.++.+..++.|.+..-...+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            35555544333 33457789999999984 5 457899999999864322222233345566777888876665556779


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |+|.+....
T Consensus        81 ~sC~V~H~~   89 (100)
T cd07699          81 YTCEVTHEG   89 (100)
T ss_pred             EEEEEEecC
Confidence            999998755

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.90  E-value=1.1e-05  Score=65.98  Aligned_cols=35  Identities=17%  Similarity=-0.063  Sum_probs=32.6

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..|.|.+++.+|+|.|+|+|.|..|....++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            57999999999999999999999999999888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.89  E-value=8.1e-05  Score=62.12  Aligned_cols=80  Identities=21%  Similarity=0.386  Sum_probs=50.4

Q ss_pred             eEEEEEEEEecC---CCeEEEEeC--CE---Eec--cCCccceeecc--CCcee-----eeeeEEEEEecCCCCCeEEEE
Q psy10487        277 NVTMSCYVYGDP---EPTILWLLN--GQ---VLH--NSSFDLLEEEE--GDALF-----EKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       277 ~v~l~C~~~g~P---~p~v~W~~~--g~---~l~--~~~~~~~~~~~--~~~~~-----~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +++|.|.....+   ...|.|+|.  +.   .+.  ...........  ++..+     ...+.|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            589999986544   347999983  21   111  00000011111  11111     124689999999999999999


Q ss_pred             Eeec-CCcceeEEEEEEc
Q psy10487        340 YAEN-IRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N-~~G~~~~~~~L~V  356 (610)
                      .+.+ ..|..++.+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6777777888876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=97.88  E-value=1.7e-05  Score=61.90  Aligned_cols=37  Identities=14%  Similarity=0.039  Sum_probs=33.0

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        37 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          37 PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            3457999999999999999999999999999888754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.88  E-value=3.9e-05  Score=64.81  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             eeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCC--EE---eccCCccceeeccCCcee---eeeeEEEEEecCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNG--QV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLD  333 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D  333 (610)
                      +...|..+.+.+|++++|.|.+.+.. ...+.|+|..  ..   +.................   .....|+|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            34556778899999999999998766 6789999832  11   110000000000000000   123479999999999


Q ss_pred             CeEEEEEeecC
Q psy10487        334 AGEYTCYAENI  344 (610)
Q Consensus       334 ~G~Y~C~a~N~  344 (610)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.87  E-value=1.6e-05  Score=64.29  Aligned_cols=37  Identities=3%  Similarity=-0.170  Sum_probs=32.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ....|.|.++..+|+|.|+|.|.|..|+.+..+.|.|
T Consensus        50 ~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          50 DLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            3568999999999999999999999999988887754

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.86  E-value=9.7e-06  Score=72.30  Aligned_cols=36  Identities=33%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             EEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       323 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      .|+|.+++.+|+|.|+|.+.+..|.....+.|.|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~   37 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE   37 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence            699999999999999999999999999999998853

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.86  E-value=1.8e-05  Score=63.13  Aligned_cols=36  Identities=14%  Similarity=-0.032  Sum_probs=32.7

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|.|.|.|.|..|+....+.|.|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            467999999999999999999999999999888764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.86  E-value=9.8e-05  Score=66.90  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=60.9

Q ss_pred             cceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCc-cceeeccCCceee------eeeEEEEEecCCCCCeEEEE
Q psy10487        268 SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSF-DLLEEEEGDALFE------KSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ..+.|.+|++++|.|... +...+.|.|+|....+..... .....+...+.+.      ..+.|+|.+|+.+|+|.|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            356788999999999984 667788999996443322111 1111111111121      34799999999999999999


Q ss_pred             Eeec-CCc-ceeEEEEEEcC
Q psy10487        340 YAEN-IRG-NASGEISLDLP  357 (610)
Q Consensus       340 ~a~N-~~G-~~~~~~~L~V~  357 (610)
                      ...- ..| ..+.++-|.|.
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEEecCCCCCceeEEEEEEE
Confidence            9754 356 67788888884

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.84  E-value=3.2e-06  Score=70.04  Aligned_cols=36  Identities=17%  Similarity=-0.015  Sum_probs=31.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            457999999999999999999999999988777653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.83  E-value=6.7e-05  Score=64.54  Aligned_cols=78  Identities=26%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             eecceEeecCceEEEEEEEEe--cCCCeEEEEeC--CEE----eccCCc-ccee---eccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYG--DPEPTILWLLN--GQV----LHNSSF-DLLE---EEEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~--g~~----l~~~~~-~~~~---~~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.+  .+.+.+.|++.  +..    +..... ....   ...++....     ....|+|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            456678889999999999987  68889999994  221    100000 0000   001111111     245899999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.82  E-value=1.2e-05  Score=63.00  Aligned_cols=37  Identities=14%  Similarity=0.037  Sum_probs=32.5

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|+|.|..|.++....|.|
T Consensus        38 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          38 DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            4567999999999999999999999999988877654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.82  E-value=2e-05  Score=62.05  Aligned_cols=39  Identities=15%  Similarity=0.047  Sum_probs=34.5

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ..+..|.|.+++.+|.|.|+|.|.|..|..+.+++|.|.
T Consensus        36 ~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          36 ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            334579999999999999999999999999999998764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.82  E-value=2.8e-05  Score=64.30  Aligned_cols=36  Identities=11%  Similarity=0.020  Sum_probs=32.2

Q ss_pred             ccceeeeeeeeccCcceeeeecCCC-cceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQ-PDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~~~~~~l~v  457 (610)
                      .+.|.|.+++.+|+|.|+|.|+|.+ |+++.++.|.|
T Consensus        59 ~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          59 SSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             ceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            3689999999999999999999997 99988888765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.79  E-value=2.9e-05  Score=64.87  Aligned_cols=36  Identities=11%  Similarity=-0.112  Sum_probs=33.0

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|+++.++.|.|
T Consensus        64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V   99 (101)
T cd05859          64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQI   99 (101)
T ss_pred             ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEE
Confidence            357999999999999999999999999999888865

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.78  E-value=0.00012  Score=60.66  Aligned_cols=82  Identities=29%  Similarity=0.376  Sum_probs=50.7

Q ss_pred             CceEEEEEEEEecCCC-eEEEEeCCE----EeccC-C-ccceeecc-CCce-----eeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        275 GGNVTMSCYVYGDPEP-TILWLLNGQ----VLHNS-S-FDLLEEEE-GDAL-----FEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p-~v~W~~~g~----~l~~~-~-~~~~~~~~-~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      |++++|.|........ .|.|+|...    .+... . ........ .+..     .....+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999987654333 599998422    11100 0 00000000 0000     023468999999999999999997


Q ss_pred             e-cCCcceeEEEEEEc
Q psy10487        342 E-NIRGNASGEISLDL  356 (610)
Q Consensus       342 ~-N~~G~~~~~~~L~V  356 (610)
                      . ...|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45777788888876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.78  E-value=2.7e-05  Score=61.55  Aligned_cols=35  Identities=17%  Similarity=0.053  Sum_probs=29.4

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ..++.|.|.+++.+|+|.|.|.|.|..|+...++.
T Consensus        35 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   69 (77)
T cd05760          35 SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQN   69 (77)
T ss_pred             CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCce
Confidence            34568999999999999999999999998755433

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=3e-05  Score=53.60  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=17.8

Q ss_pred             CccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCC
Q psy10487         82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL  120 (610)
Q Consensus        82 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l  120 (610)
                      +|++|+|++|+|+.+++ .|++|++|++|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555433 245555555555555555443

...

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.77  E-value=0.00015  Score=57.34  Aligned_cols=76  Identities=13%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             ceEeecCceEEEEEEEEec--CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        269 MVIREAGGNVTMSCYVYGD--PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ...+..|++++|.|+....  |.+.|.|.-.+.......     .       ....+|.+..++..|+|.|+|.+.-..-
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----~-------~~~ktL~~~qv~~qdSG~WtC~V~~~~k   75 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----N-------QDKKTLNLVQLGPNDSGTWDCIVSVNSS   75 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-----c-------CCccEEEeceeCcccCCEEEEEEEECce
Confidence            3356789999999999654  455999998665432111     0       1113899999999999999999975533


Q ss_pred             ceeEEEEEEc
Q psy10487        347 NASGEISLDL  356 (610)
Q Consensus       347 ~~~~~~~L~V  356 (610)
                      .....+.+.|
T Consensus        76 ~~~~~~~V~V   85 (88)
T cd07694          76 EKTLKLDIKV   85 (88)
T ss_pred             EEEEEeeEEE
Confidence            3444444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=97.77  E-value=3.1e-05  Score=60.11  Aligned_cols=37  Identities=14%  Similarity=-0.006  Sum_probs=31.3

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|..+.+..+.
T Consensus        32 ~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976          32 KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            3456899999999999999999999999877766554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.75  E-value=3.7e-05  Score=64.18  Aligned_cols=36  Identities=17%  Similarity=0.044  Sum_probs=33.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.++..+|+|.|+|.|+|+.|+++..+.|.|
T Consensus        64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V   99 (101)
T cd04975          64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYV   99 (101)
T ss_pred             EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEE
Confidence            467999999999999999999999999999888865

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.75  E-value=0.00035  Score=57.28  Aligned_cols=82  Identities=24%  Similarity=0.362  Sum_probs=54.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.... ....|+.++|.|.|.|. |. ..++|.+||..+..+........++|+.+..++.|.+..   .+...|
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~y   76 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIY   76 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeE
Confidence            3555554433 23346668999999995 53 468999999987654333333445566667777887754   455699


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        77 tC~V~H~~   84 (94)
T cd05767          77 SCIVEHWG   84 (94)
T ss_pred             EEEEEeCC
Confidence            99997754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.73  E-value=0.00041  Score=57.01  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             ecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        273 EAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..|+.++|.|.+.|. |.. +++|++||..+...........++++.+..++.|.+.   ..+...|+|++......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence            357889999999985 543 6899999998776422223334555566677777664   34566899999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=3.4e-05  Score=53.36  Aligned_cols=38  Identities=39%  Similarity=0.516  Sum_probs=22.2

Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcccccc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL  144 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  144 (610)
                      +|++|+|++|+|+.+++ .|.++++|+.|+|++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            46666666666666654 356666666666666666554

...

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.73  E-value=0.00021  Score=58.72  Aligned_cols=81  Identities=21%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             ceEEEEEEEEecC-CCeEEEEeCCE----EeccCCc--cceeeccCCcee------eeeeEEEEEecCCCCCeEEEEEe-
Q psy10487        276 GNVTMSCYVYGDP-EPTILWLLNGQ----VLHNSSF--DLLEEEEGDALF------EKSVSITLFNVTDLDAGEYTCYA-  341 (610)
Q Consensus       276 ~~v~l~C~~~g~P-~p~v~W~~~g~----~l~~~~~--~~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a-  341 (610)
                      ++++|.|.....+ ...|+|.|...    .+.....  ...+.....+.+      ...++|.|.+++.+|+|.|+|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            3689999986433 34799998421    2211110  000000000001      23579999999999999999996 


Q ss_pred             ecCCcceeEEEEEEc
Q psy10487        342 ENIRGNASGEISLDL  356 (610)
Q Consensus       342 ~N~~G~~~~~~~L~V  356 (610)
                      ....|+.++++.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            557899999998887

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00096 Ig Immunoglobulin domain

Probab=97.71  E-value=0.0002  Score=54.09  Aligned_cols=68  Identities=40%  Similarity=0.631  Sum_probs=48.3

Q ss_pred             EEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       278 v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      +.|.|.+.+.+.+.+.|++++.........  ..............|.|.+++..|.|.|.|.+.+..+.
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            468999999888899999988765443321  00011112245568999999999999999999887633

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.70  E-value=6.8e-05  Score=57.77  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=27.2

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ..|.|.+++  |+|.|+|.|.|..|..+.+++|+
T Consensus        38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739          38 NVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            468888874  89999999999999999887763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.68  E-value=0.00048  Score=56.27  Aligned_cols=80  Identities=24%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.+.+.... .+..|+..+|.|.|.|.-++  .++|.+||..+. .........++++.+..++.|.+.   ..+...|+
T Consensus         2 P~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ys   76 (93)
T cd05770           2 PKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYA   76 (93)
T ss_pred             CEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEE
Confidence            555544322 23457777999999996443  679999999987 433333445566666666777665   45777899


Q ss_pred             EEeecCC
Q psy10487        339 CYAENIR  345 (610)
Q Consensus       339 C~a~N~~  345 (610)
                      |++....
T Consensus        77 C~V~H~~   83 (93)
T cd05770          77 CRVRHNS   83 (93)
T ss_pred             EEEEECC
Confidence            9998743

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.68  E-value=7.3e-05  Score=61.06  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=32.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.++..+|.|.|+|.|.|..|++...+.|.+
T Consensus        55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          55 IYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            457999999999999999999999999998887753

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.67  E-value=6.4e-05  Score=60.66  Aligned_cols=37  Identities=11%  Similarity=0.065  Sum_probs=32.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        49 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          49 EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            4557999999999999999999999999988887754

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.65  E-value=4.9e-05  Score=61.28  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=32.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|+++..+.|.|
T Consensus        49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            3457999999999999999999999999999887754

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.65  E-value=3e-06  Score=69.18  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=33.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .....|.|.++..+|+|.|+|.|.|..|+.+..+.|.|
T Consensus        53 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   53 GGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             TTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            45668999999999999999999999999998887754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.65  E-value=6.5e-05  Score=58.84  Aligned_cols=36  Identities=14%  Similarity=0.032  Sum_probs=29.2

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcce-eeeeecc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDM-ELIEQSL  456 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~  456 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus        36 ~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738          36 RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            45579999999999999999999999984 3444443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.63  E-value=9.3e-05  Score=59.02  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=31.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|.++..+.+.
T Consensus        47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856          47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45799999999999999999999999988877664

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.63  E-value=5.6e-05  Score=62.04  Aligned_cols=35  Identities=6%  Similarity=-0.128  Sum_probs=31.2

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..|.|.+++.+|+|.|+|.|.|..|+.+....+.|
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          58 ASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            47999999999999999999999999888777653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.63  E-value=0.00023  Score=58.59  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.+...+ ...+..|++|+|.|+... +.-.+.|+|+|.........  ....+    .....+.|..++.+|+|.|.|.
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~----~~~a~f~I~~~~~~~~G~Y~C~   73 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHG----GFQASFPLGPVTPAHAGTYRCY   73 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCC----eEEEEEEecCCCcccCEEEEEE
Confidence            4444433 456778999999998765 55679999988653211000  00001    2345889999999999999999


Q ss_pred             ee
Q psy10487        341 AE  342 (610)
Q Consensus       341 a~  342 (610)
                      ..
T Consensus        74 ~~   75 (94)
T cd05711          74 GS   75 (94)
T ss_pred             EE
Confidence            74

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG3515|consensus

Probab=97.62  E-value=4.9e-05  Score=83.33  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             ecceEeecCceEEEEEEEEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .....+..|++|.|.|.+.|+|+ +.+.|++.++...  .+. ..        ....+|......+...++|.|+|.|..
T Consensus        14 ~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~-~~--------~~~~~~~~~~~~~~~~~~~~c~a~ns~   82 (741)
T KOG3515|consen   14 SLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRY-AT--------IADPTLVTTGDVRDTVAELNCRAFNSV   82 (741)
T ss_pred             CCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccc-cc--------ccCCceeeecchhhhhhhhhhhhcccc
Confidence            33347889999999999987754 6899999876655  111 11        222377788888888899999999997


Q ss_pred             cce-eEEEEEEcC
Q psy10487        346 GNA-SGEISLDLP  357 (610)
Q Consensus       346 G~~-~~~~~L~V~  357 (610)
                      |.. .....+.|.
T Consensus        83 ~~~~~~~~~l~v~   95 (741)
T KOG3515|consen   83 GMPSRCPMILDVD   95 (741)
T ss_pred             cCceecceeeccc
Confidence            764 445666663

>KOG4658|consensus

Probab=97.61  E-value=7.1e-05  Score=85.92  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=98.0

Q ss_pred             cEEEcCCCCCCccCccc-CCCccEEEeecCC--CCCCChhhhcccCCCCccEEEcccCC-CcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKDANFTALPSTL-DSDIQVLDLNNNK--ISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~--i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdL  112 (610)
                      ..+.-.++.+..++... ..++++|-+..|.  +..+..+.|.  .++.|+.|+|++|. +..+ |..+++|-+|++|+|
T Consensus       526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDL  602 (889)
T ss_pred             eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcC-ChHHhhhhhhhcccc
Confidence            34444555566666443 3379999999997  8888888888  79999999999875 5555 567899999999999


Q ss_pred             cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487        113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ  164 (610)
Q Consensus       113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~  164 (610)
                      ++..+..++. .+.++.+|.+|++..+......+.....|.+|++|.+-...
T Consensus       603 ~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  603 SDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999998875 58999999999999887655556666678999999986543

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.61  E-value=0.00041  Score=56.96  Aligned_cols=75  Identities=17%  Similarity=0.330  Sum_probs=50.0

Q ss_pred             cCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        274 AGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      .++.++|.|.+.|. |. ..|+|.++|..+.............++.+..++.|.+..-...+...|+|++.......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            35668999999985 54 47899999998643322111122233356777888877555556679999998866443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.61  E-value=0.00015  Score=60.24  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             EeecCceEEEEEEEEec--CCCeEEEEeCC--EEe---ccCCccceeeccCCcee---eeeeEEEEEecCCCCCeEEEEE
Q psy10487        271 IREAGGNVTMSCYVYGD--PEPTILWLLNG--QVL---HNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      .+.+|++++|.|...+.  ....+.|++..  ...   ............++...   .....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998775  56779999832  111   10000000000001000   1235799999999999999999


Q ss_pred             eecC
Q psy10487        341 AENI  344 (610)
Q Consensus       341 a~N~  344 (610)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG2982|consensus

Probab=97.60  E-value=3.4e-05  Score=74.54  Aligned_cols=159  Identities=19%  Similarity=0.191  Sum_probs=80.4

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCcE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ-DTFLGNDRLKV  133 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~-~~f~~l~~L~~  133 (610)
                      ..++.|||.+|.|+.+..-.-..-+|+.|+.|+|+.|++.......=..+.+|++|-|.+..+..-.. ..+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            35677777777777665422111157777777777777664432110245567777777766653222 23455667777


Q ss_pred             EEeeCccccccC--cCcCCCC-CCccEEEccCccccccC-HHHh-hcCccccccccccccccccCc-ccccCCCcccEEe
Q psy10487        134 LYLNGNPITELR--AGQFPKL-PYLKTIELQHCQIHSVH-KDAL-IHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLS  207 (610)
Q Consensus       134 L~Ls~N~l~~l~--~~~~~~l-~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~  207 (610)
                      |+++.|.+..+.  .+..... +.++.|++..|...-.. ...+ ..++++..+.+..|.|.+... ..+..++.+.-|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            777777554432  1111111 24444444444322110 0111 123556666666666654432 2334444455556


Q ss_pred             cCCCcc
Q psy10487        208 LDGNPW  213 (610)
Q Consensus       208 l~~N~~  213 (610)
                      |+.|.+
T Consensus       231 L~~~~i  236 (418)
T KOG2982|consen  231 LGANNI  236 (418)
T ss_pred             hccccc
Confidence            665554

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.60  E-value=8.1e-05  Score=59.10  Aligned_cols=29  Identities=14%  Similarity=0.052  Sum_probs=26.5

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      .++.|.|.++..+|+|.|.|.|.|..|..
T Consensus        42 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734          42 SNGSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            45789999999999999999999999976

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.57  E-value=6.9e-05  Score=58.99  Aligned_cols=34  Identities=9%  Similarity=0.065  Sum_probs=29.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ..+.|.|.+++.+|+|.|+|.|+|..|..++.+.
T Consensus        42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895          42 KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            3467999999999999999999999999887654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.56  E-value=4.2e-05  Score=59.91  Aligned_cols=34  Identities=9%  Similarity=0.028  Sum_probs=29.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|++..+++
T Consensus        41 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          41 KNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            3468999999999999999999999999877654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.56  E-value=0.00011  Score=60.21  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             cceeeeeeeeccCcceeeeecCCCccee
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      ..|.|.++..+|+|.|+|.|+|+.|+..
T Consensus        56 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866          56 SRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             eEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            4799999999999999999999999863

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.55  E-value=7.4e-05  Score=59.18  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.+
T Consensus        40 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743          40 GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            34679999999999999999999999998776554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.53  E-value=0.00067  Score=55.77  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=48.3

Q ss_pred             CceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc--eeEE
Q psy10487        275 GGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN--ASGE  351 (610)
Q Consensus       275 G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~  351 (610)
                      .......|.+ .|.|.++|+|+++.   .. ..........++.+...+.|.+.-....|.-.|+|+|.|..-.  ...+
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~-~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~   90 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTL---GG-EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS   90 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCC---CC-cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            3457889998 58999999999971   11 1111122223334556677877655555666899999998744  3444


Q ss_pred             EEEE
Q psy10487        352 ISLD  355 (610)
Q Consensus       352 ~~L~  355 (610)
                      +.|.
T Consensus        91 ~~L~   94 (95)
T cd05719          91 VTLN   94 (95)
T ss_pred             EEee
Confidence            4444

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.51  E-value=0.00011  Score=59.07  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=32.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|+.+.++.+.|
T Consensus        47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            3458999999999999999999999999888877754

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.50  E-value=0.0016  Score=55.24  Aligned_cols=74  Identities=24%  Similarity=0.363  Sum_probs=50.7

Q ss_pred             EeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCC-ceeeeeeEEEEEecCCCCCe-EEEEEeecCCc
Q psy10487        271 IREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGD-ALFEKSVSITLFNVTDLDAG-EYTCYAENIRG  346 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G  346 (610)
                      ....|+.++|.|.+.|. |. .+++|++||..+.....  ....+++ +.+..++.|.+.. ...|.| .|+|.+.....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~--~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP--NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc--ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            44568889999999875 54 58999999999864321  2222233 3566778888874 444544 59999998754


Q ss_pred             c
Q psy10487        347 N  347 (610)
Q Consensus       347 ~  347 (610)
                      .
T Consensus        94 ~   94 (111)
T cd05772          94 Q   94 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.50  E-value=3.5e-05  Score=64.03  Aligned_cols=27  Identities=15%  Similarity=0.043  Sum_probs=21.2

Q ss_pred             eeccCcceeeeecCCCcc-eeeeeeccc
Q psy10487        431 TTTDRHTGSCEALGSQPD-MELIEQSLA  457 (610)
Q Consensus       431 ~~~D~G~Y~C~A~N~~G~-~~~~~~l~v  457 (610)
                      +.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          72 GRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CcCcCEEEEEEEEccccceecceEEEEe
Confidence            678999999999999998 444455443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.48  E-value=0.00012  Score=59.78  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..++.|.|.+++.+|+|.|.|.|.|..|....
T Consensus        52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          52 NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            34568999999999999999999999998655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.47  E-value=0.00048  Score=59.18  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=50.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-CCCeEEEEeC--CEE---eccCCccceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN--GQV---LHNSSFDLLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      +...+..+.+.+|++++|.|...+. ....+.|++.  +..   +............++...     .....|+|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            3455677889999999999998764 4567999983  221   100000000000011111     1134799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.46  E-value=2.2e-05  Score=65.28  Aligned_cols=33  Identities=15%  Similarity=0.018  Sum_probs=29.1

Q ss_pred             cceeeeeeeec-cCcceeeeecCCCcceeeeeec
Q psy10487        423 KKLLDVSITTT-DRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       423 ~~L~i~~v~~~-D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      +.|.|.+++.+ |+|.|+|.|.|..|+++..++|
T Consensus        64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            47999999985 5999999999999999887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.45  E-value=4.2e-05  Score=63.05  Aligned_cols=31  Identities=13%  Similarity=0.054  Sum_probs=26.0

Q ss_pred             cccceeeeeee-eccCcceeeeecCCCcceee
Q psy10487        421 QEKKLLDVSIT-TTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       421 ~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .++.|.|.++. ..|+|.|+|+|+|..|++.+
T Consensus        56 ~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          56 VAGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             ECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            35678888865 58999999999999998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.00047  Score=57.59  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             eecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccce-eecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        272 REAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLL-EEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       272 v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~-~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +..|+.++|.|.|.|..++  .++|++||..+........ ...+  +++.+..++.|.|..-...+...|+|++....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            3457789999999996444  5799999998764321111 1111  24566777888874444445668999997654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.40  E-value=0.00014  Score=59.85  Aligned_cols=37  Identities=16%  Similarity=0.043  Sum_probs=33.0

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .++.|.|.+++.+|+|.|+|.|+|..|..++.+.|.|
T Consensus        58 ~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          58 QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             cCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            3568999999999999999999999999999887754

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.39  E-value=0.0018  Score=51.90  Aligned_cols=70  Identities=27%  Similarity=0.455  Sum_probs=51.3

Q ss_pred             cCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        274 AGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      .++.++|.|.+.|. |.. .|.|+++|..+...........++++.+...+.|.+.   ..+...|+|++.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            47889999999985 544 6899999998876544333332456677778888887   5556689999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.39  E-value=0.00096  Score=56.82  Aligned_cols=93  Identities=18%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             CCceeeee-cceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccc-eeeccCCceeeeeeEEEEEecCCCC-C
Q psy10487        260 PPNVTIKE-SMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLD-A  334 (610)
Q Consensus       260 ~P~i~~~~-~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D-~  334 (610)
                      +|.+.+.+ ......+++.++|.|.+.|. |. .+|+|++||..+....... .....+++.+..++.|.|......| .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            35555543 33333456789999999985 54 3789999999876543211 1222223566778888887665544 5


Q ss_pred             eEEEEEeecCCcceeEEE
Q psy10487        335 GEYTCYAENIRGNASGEI  352 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~  352 (610)
                      ..|+|.+...........
T Consensus        82 ~~ytC~V~H~g~~~~~~~   99 (115)
T cd05769          82 NTFTCIVQFYGGTDTDKW   99 (115)
T ss_pred             CeEEEEEEEeCCccceee
Confidence            689999988765554443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.39  E-value=0.00021  Score=56.76  Aligned_cols=36  Identities=6%  Similarity=-0.089  Sum_probs=31.2

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      +..|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus        44 ~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          44 GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            347999999999999999999999999888776643

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.38  E-value=6.1e-05  Score=61.90  Aligned_cols=31  Identities=10%  Similarity=-0.065  Sum_probs=26.5

Q ss_pred             cccceeeeeee-eccCcceeeeecCCCcceee
Q psy10487        421 QEKKLLDVSIT-TTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       421 ~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .++.|.|.++. .+|+|.|+|.|.|..|.+..
T Consensus        55 ~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          55 VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             ECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            35689998885 58999999999999998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.37  E-value=0.00074  Score=56.00  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=47.1

Q ss_pred             eEeecCceEEEEEEEEe-cCCCeEEEEeCCE-----EeccCCccceeeccCCcee-----eeeeEEEEEecCCCCCeEEE
Q psy10487        270 VIREAGGNVTMSCYVYG-DPEPTILWLLNGQ-----VLHNSSFDLLEEEEGDALF-----EKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~-----~l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +.+.+|++++|.|.... .....+.|++...     .+..... ......++...     .....|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~-~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGS-VQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCc-cccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence            46789999999998765 4567799998432     1110000 00000011011     12358999999999999999


Q ss_pred             EEeecCC
Q psy10487        339 CYAENIR  345 (610)
Q Consensus       339 C~a~N~~  345 (610)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG3515|consensus

Probab=97.36  E-value=0.00027  Score=77.65  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=64.3

Q ss_pred             ccCCCCCCCCCCCCccC--C-CcccccccccccCCCceeeee-cceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEecc
Q psy10487        229 SKLYSHPLSCTEPGMLQ--T-KHWDDVKAQEFACPPNVTIKE-SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHN  303 (610)
Q Consensus       229 ~~l~~~~~~C~a~~~l~--g-~~~~~v~~~~~~c~P~i~~~~-~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~  303 (610)
                      .+.+.+.|+|.+.+...  . ............|........ ......+|+.+.|.|.+. |+|.+.+.|+++...+..
T Consensus       171 Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  171 RKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             EecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            35677889999876422  1 111222222233443333333 346678899999999774 789999999998877665


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ........ .+   .....++.+..-...+.-...|.|.|
T Consensus       251 ~sl~~~~~-sg---~~v~~~~~~~~~r~~~~~~~kc~a~n  286 (741)
T KOG3515|consen  251 SSLLSQEP-SG---DTVSSTLVLRVGRQDLQAQLKCKASN  286 (741)
T ss_pred             hhcccCCC-CC---CcccccccccccccchhhhhhccccC
Confidence            41100000 11   12233455444444555567799999

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.34  E-value=0.00023  Score=56.15  Aligned_cols=33  Identities=9%  Similarity=-0.174  Sum_probs=26.0

Q ss_pred             ccccceeeeeeee----ccCcceeeeecCCCcceeee
Q psy10487        420 DQEKKLLDVSITT----TDRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       420 ~~~~~L~i~~v~~----~D~G~Y~C~A~N~~G~~~~~  452 (610)
                      ..++.|.|..+..    +|+|.|+|.|.|..|++...
T Consensus        36 ~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          36 RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4567899887742    47999999999999986654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.34  E-value=0.0017  Score=53.28  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=45.7

Q ss_pred             ceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE
Q psy10487        276 GNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG  350 (610)
Q Consensus       276 ~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  350 (610)
                      ....+.|.+. |.|.+.|+|+++..   . ..........++.+...+.|.+......|...|+|+|.|..-....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~---g-~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLG---G-NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCC---C-CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            3578999885 88999999999721   1 1111222222334455677877655556666899999998754333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.33  E-value=6e-05  Score=60.84  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ++.|.|.+++.+|+|.|+|.|.|..|....
T Consensus        50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724          50 DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            568999999999999999999999998654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.32  E-value=0.00031  Score=57.59  Aligned_cols=35  Identities=11%  Similarity=-0.075  Sum_probs=31.1

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..|.|.+++.+|+|.|+|.|.|..|.++.+..+.|
T Consensus        58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          58 ASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            37999999999999999999999999988777653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.31  E-value=0.00021  Score=56.39  Aligned_cols=32  Identities=9%  Similarity=-0.053  Sum_probs=26.3

Q ss_pred             ccccceeeeeeee----ccCcceeeeecCCCcceee
Q psy10487        420 DQEKKLLDVSITT----TDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       420 ~~~~~L~i~~v~~----~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..++.|.|.++..    +|+|.|+|.|.|..|++..
T Consensus        36 ~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          36 PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4567888888754    6999999999999998654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.30  E-value=0.00032  Score=57.76  Aligned_cols=31  Identities=16%  Similarity=0.094  Sum_probs=26.1

Q ss_pred             cccceeeeeee-eccCcceeeeecCCCcceee
Q psy10487        421 QEKKLLDVSIT-TTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       421 ~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .++.|.|.++. .+|+|.|+|.|+|..|++..
T Consensus        56 ~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          56 IDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            45678898875 68999999999999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.29  E-value=0.00073  Score=69.99  Aligned_cols=129  Identities=19%  Similarity=0.300  Sum_probs=62.6

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeec-CCCCCCChhhhcccCCCCccEEEcccC-CCcccchhhhcCCCCCcEEEccC
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNN-NKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~-n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      ..++-.+..|+++| .+|.+|+.|.+++ +.++.++.. +    ..+|++|.|.+| .+..++       ..|+.|+|+.
T Consensus        55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~-L----P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~  121 (426)
T PRK15386         55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS-I----PEGLEKLTVCHCPEISGLP-------ESVRSLEIKG  121 (426)
T ss_pred             CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch-h----hhhhhheEccCcccccccc-------cccceEEeCC
Confidence            34555555677777 5677777777765 344444422 1    236677777766 444332       2456666665


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCcc-ccccC-cCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNP-ITELR-AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      +.+..+..    -.++|+.|.+.+++ ..... +..+  .++|+.|++++|....++ ..+  -.+|+.|.++.+
T Consensus       122 n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP-~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        122 SATDSIKN----VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILP-EKL--PESLQSITLHIE  187 (426)
T ss_pred             CCCccccc----CcchHhheecccccccccccccccc--CCcccEEEecCCCcccCc-ccc--cccCcEEEeccc
Confidence            54433211    01345555554322 11000 0011  146677777666544332 111  135666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.27  E-value=0.00024  Score=67.89  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=110.0

Q ss_pred             CCCccEEEeecCCCCCCChhhhcc--cCCCCccEEEcccCCCcc----------cchhhhcCCCCCcEEEccCCCCCCCC
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKS--IGLLNLQRIYLKNSGIRE----------VHRDTFKYLTILVEVDLSDNQIAWLH  121 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~--~~l~~L~~L~L~~n~l~~----------i~~~~f~~l~~L~~LdLs~n~l~~l~  121 (610)
                      ...+..++|++|.|..--..++.+  .+-.+|+..+++.--...          .--.++.+++.|+.++||+|.+..-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            357899999999987544444432  134566666665432211          11345778999999999999886433


Q ss_pred             c----ccccCCCCCcEEEeeCccccccCcCcC-------------CCCCCccEEEccCccccccCHH----HhhcCcccc
Q psy10487        122 Q----DTFLGNDRLKVLYLNGNPITELRAGQF-------------PKLPYLKTIELQHCQIHSVHKD----ALIHLTALE  180 (610)
Q Consensus       122 ~----~~f~~l~~L~~L~Ls~N~l~~l~~~~~-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~  180 (610)
                      +    +.++....|.+|.|++|.+..+...-+             ..-+.|+.+....|++...+..    .|..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            2    345667899999999998776543222             2348899999999999876543    233335889


Q ss_pred             cccccccccccc--Cc---ccccCCCcccEEecCCCcccc
Q psy10487        181 SLNLNGNRLKHL--SE---SVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       181 ~L~L~~n~l~~~--~~---~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      .+.+..|.|..-  ..   ..+.-+.+|+.|++++|.|+-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            999999987632  11   122346789999999999864

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.26  E-value=0.00016  Score=59.75  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=25.8

Q ss_pred             ccceeeeee-----eeccCcceeeeecCC-Ccceee-eeec
Q psy10487        422 EKKLLDVSI-----TTTDRHTGSCEALGS-QPDMEL-IEQS  455 (610)
Q Consensus       422 ~~~L~i~~v-----~~~D~G~Y~C~A~N~-~G~~~~-~~~l  455 (610)
                      ++.|.|.++     ...|+|.|+|.|.|. .|.+.. .++|
T Consensus        53 ~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l   93 (95)
T cd05722          53 NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARL   93 (95)
T ss_pred             CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEE
Confidence            456777777     477999999999999 998733 3444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.24  E-value=0.00033  Score=54.27  Aligned_cols=31  Identities=13%  Similarity=-0.120  Sum_probs=25.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .+..|.|.+++.+|+|.|+|.|+|..+....
T Consensus        34 ~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~   64 (72)
T cd07702          34 DGYSLVIKDVTEEDAGIYTILLGIKQYNLFK   64 (72)
T ss_pred             CCCEEEECcCCHHHCEEEEEEEEccccceEe
Confidence            3457999999999999999999997655433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.22  E-value=0.002  Score=53.04  Aligned_cols=79  Identities=18%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             ceEEEEEEEEe-cCCCeEEEEeCCE----EeccCC--ccceeecc--CCcee----eeeeEEEEEecCCCCCeEEEEEee
Q psy10487        276 GNVTMSCYVYG-DPEPTILWLLNGQ----VLHNSS--FDLLEEEE--GDALF----EKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       276 ~~v~l~C~~~g-~P~p~v~W~~~g~----~l~~~~--~~~~~~~~--~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ++++|.|.... .....|+|.|...    .+....  ....+...  ++..+    ...++|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            36889998753 2345789998432    121110  00011111  01001    134799999999999999999986


Q ss_pred             cC-CcceeEEEEE
Q psy10487        343 NI-RGNASGEISL  354 (610)
Q Consensus       343 N~-~G~~~~~~~L  354 (610)
                      .- .|..++.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            64 7777777665

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.22  E-value=0.00049  Score=56.37  Aligned_cols=35  Identities=14%  Similarity=0.060  Sum_probs=28.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCc-ceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQP-DMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~  456 (610)
                      ...|+|.+++.+|+|.|+|.|.|..| ..+.+..|.
T Consensus        56 ~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          56 RSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             EEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            35799999999999999999999965 445555543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>KOG3665|consensus

Probab=97.22  E-value=0.00015  Score=81.06  Aligned_cols=131  Identities=16%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             CccEEEeecCCC-C-CCChhhhcccCCCCccEEEcccCCCcccc-hhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCc
Q psy10487         56 DIQVLDLNNNKI-S-YLTKEAFKSIGLLNLQRIYLKNSGIREVH-RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLK  132 (610)
Q Consensus        56 ~L~~L~L~~n~i-~-~l~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~  132 (610)
                      +|+.||+++... . .++.....  -|++|+.|.+.+-.+..-. ...+.++++|..||+|+.+++.+  ..++.+++|+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            788888887642 1 22222222  4788898888876654332 12346788888999999888887  4577888888


Q ss_pred             EEEeeCccccccC-cCcCCCCCCccEEEccCccccccC--HH----HhhcCcccccccccccccc
Q psy10487        133 VLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVH--KD----ALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       133 ~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~--~~----~~~~l~~L~~L~L~~n~l~  190 (610)
                      .|.+.+=.+..-. -..+-+|.+|+.||+|........  ..    ....+++|+.||.+++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8887765554421 122446788888888876443332  11    1123678888888877654

>KOG2982|consensus

Probab=97.22  E-value=0.00038  Score=67.44  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=55.8

Q ss_pred             cEEEcCCCCCCccCc--cc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-hhhcCCCCCcEE
Q psy10487         37 KSALCKDANFTALPS--TL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEV  110 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~--~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L  110 (610)
                      +.+|..++++.....  .|   .+.|++|+|+.|.+..-....-  +.+.+|+.|-|.+..+..-.. ..+..++.+++|
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            566777776654332  11   2479999999998865332221  247799999999988765433 345789999999


Q ss_pred             EccCCCCCC
Q psy10487        111 DLSDNQIAW  119 (610)
Q Consensus       111 dLs~n~l~~  119 (610)
                      .++.|++..
T Consensus       152 HmS~N~~rq  160 (418)
T KOG2982|consen  152 HMSDNSLRQ  160 (418)
T ss_pred             hhccchhhh
Confidence            999996554

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.21  E-value=0.0026  Score=53.75  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             EeecCceEEEEEEEEecC-CCeEEEEeC--C---EE----eccCCccceeec----cCCcee-----eeeeEEEEEecCC
Q psy10487        271 IREAGGNVTMSCYVYGDP-EPTILWLLN--G---QV----LHNSSFDLLEEE----EGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~P-~p~v~W~~~--g---~~----l~~~~~~~~~~~----~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      .+.+|++++|.|.+.+.. ...+.|++-  |   ..    +...........    ......     .....|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            578899999999987643 457999983  2   10    000000000000    111111     1124699999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999854

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.20  E-value=0.00039  Score=54.83  Aligned_cols=32  Identities=9%  Similarity=-0.009  Sum_probs=25.5

Q ss_pred             ccccceeeeeeee----ccCcceeeeecCCCcceee
Q psy10487        420 DQEKKLLDVSITT----TDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       420 ~~~~~L~i~~v~~----~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..++.|.|..+..    .|+|.|+|.|.|..|.+.+
T Consensus        36 ~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          36 PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            3466788877764    3889999999999998655

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.19  E-value=0.00032  Score=56.40  Aligned_cols=38  Identities=18%  Similarity=-0.015  Sum_probs=30.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCc--ceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQP--DMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G--~~~~~~~l~v~  458 (610)
                      ....|.|.+++.+|+|.|+|.|+|..+  ..+.+..++|+
T Consensus        44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            356899999999999999999999876  55555555554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.19  E-value=0.0031  Score=51.81  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             cCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        274 AGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .++.++|.|.|.|. |. .+|+|.+||.. .............++.+..++.|++..-.-.....|+|++....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999985 43 46899999998 33221111111224456667778766543333567999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG2123|consensus

Probab=97.18  E-value=1.8e-05  Score=75.66  Aligned_cols=82  Identities=28%  Similarity=0.376  Sum_probs=46.6

Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEE
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTI  158 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L  158 (610)
                      |.+.++|++-+|.|..|.  ...+|+.|+.|.|+-|+|+.+.+  |..+++|++|+|..|.|..+.. .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            445566666666666653  23556666666666666666643  5555666666666666555543 223455555555


Q ss_pred             EccCccc
Q psy10487        159 ELQHCQI  165 (610)
Q Consensus       159 ~L~~n~l  165 (610)
                      .|..|..
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            5555543

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.18  E-value=0.0021  Score=52.86  Aligned_cols=69  Identities=12%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             cCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        274 AGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .++.++|.|.|.|. |. -+++|.+||..+..+........+++ .+..++.|+|..-.  ....|+|.+....
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            35678999999995 43 35799999998765433333344455 66677788765432  2335999998743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.15  E-value=0.0027  Score=54.79  Aligned_cols=79  Identities=18%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             eecceEeecCceEEEEEEEEecC------CCeEEEEeCCE-----E-eccCCcccee--eccCCc-----eeeeeeEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP------EPTILWLLNGQ-----V-LHNSSFDLLE--EEEGDA-----LFEKSVSITL  326 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P------~p~v~W~~~g~-----~-l~~~~~~~~~--~~~~~~-----~~~~~~~L~I  326 (610)
                      .|..+.+.+|++++|.|......      ...+.|++...     . +.........  ...++.     .......|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            35667889999999999865321      24589998421     1 1100000000  000110     0123458999


Q ss_pred             EecCCCCCeEEEEEeecC
Q psy10487        327 FNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.14  E-value=0.00023  Score=57.55  Aligned_cols=39  Identities=18%  Similarity=0.069  Sum_probs=33.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|.......+.|.|
T Consensus        48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~   86 (86)
T cd05862          48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE   86 (86)
T ss_pred             eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence            346899999999999999999999999888877777653

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.13  E-value=0.00064  Score=55.55  Aligned_cols=32  Identities=13%  Similarity=-0.057  Sum_probs=26.5

Q ss_pred             ccccceeeeeeee-ccCcceeeeecCCCcceee
Q psy10487        420 DQEKKLLDVSITT-TDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       420 ~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..++.|.|.++.. +|+|.|+|.|+|..|.+.+
T Consensus        55 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          55 LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            3456789988875 8999999999999998654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.13  E-value=0.00034  Score=42.97  Aligned_cols=28  Identities=36%  Similarity=0.824  Sum_probs=22.4

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccC
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLD   54 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~   54 (610)
                      .||..|.|.    ..+|+|++.+|+++|..||
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence            499999999    4799999999999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.11  E-value=0.0022  Score=52.87  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             eEeecCceEEEEEEEEec--CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        270 VIREAGGNVTMSCYVYGD--PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~--P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ..+..|+.++|.|.+.|.  |. ..|+|.||++...... ......+.++.+..++.|.+..-.-.+.-.|+|.+....
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            334568899999999998  33 3579999875432211 112233445566777788776544444558999998765

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.11  E-value=0.00062  Score=54.81  Aligned_cols=35  Identities=14%  Similarity=-0.001  Sum_probs=31.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .++.|.|.+++.+|+|.|.|.|.|..|..+..++|
T Consensus        50 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          50 FNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             cCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            35689999999999999999999999999888775

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.10  E-value=0.00012  Score=60.51  Aligned_cols=35  Identities=23%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             cccceeeeeeeecc-CcceeeeecCCCcceeeeeec
Q psy10487        421 QEKKLLDVSITTTD-RHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D-~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      ....|.|.++...| .|.|.|.|.|..|+.+...+|
T Consensus        62 ~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          62 VLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             cEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            44589999998766 899999999999999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>KOG2739|consensus

Probab=97.10  E-value=0.0003  Score=67.24  Aligned_cols=86  Identities=28%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC--CCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCcc
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN--QIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLK  156 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n--~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~  156 (610)
                      +.+|+.|.+.+..++.+.  .|-.|++|+.|+++.|  ++..--.-....+++|++|+|++|+|..+.. ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            445666666666665553  2556667777777777  3322111112333666666666666654321 1123344445


Q ss_pred             EEEccCccccc
Q psy10487        157 TIELQHCQIHS  167 (610)
Q Consensus       157 ~L~L~~n~l~~  167 (610)
                      .|++.+|..+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            55555544433

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.08  E-value=0.00028  Score=50.66  Aligned_cols=49  Identities=35%  Similarity=0.766  Sum_probs=38.3

Q ss_pred             CcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487        211 NPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKHWDDVKAQEFACP  260 (610)
Q Consensus       211 N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~  260 (610)
                      |+|.|||.+.||..|+....  .....+.|..+..+. ..+.++...++.|+
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C~   51 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKCP   51 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCCc
Confidence            89999999999999998732  234579999998877 55777776667664

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=97.08  E-value=0.00065  Score=43.66  Aligned_cols=31  Identities=29%  Similarity=0.745  Sum_probs=27.4

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDI   57 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L   57 (610)
                      .||..|.|.    ...|+|.+.+|+++|..||.+.
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~t   31 (33)
T smart00013        1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPDT   31 (33)
T ss_pred             CcCCCCEEC----CCEeEeCCCCcCccCCCCCccc
Confidence            499999998    3689999999999999898754

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.05  E-value=0.00074  Score=53.77  Aligned_cols=29  Identities=17%  Similarity=0.103  Sum_probs=23.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..+.|.|..+  .|.|.|.|+|+|..|....
T Consensus        47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            3456888776  4889999999999997765

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>KOG3665|consensus

Probab=96.94  E-value=0.00056  Score=76.66  Aligned_cols=131  Identities=18%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             CCccEEEcccCCCc-ccchhhh-cCCCCCcEEEccCCCCCCCC-cccccCCCCCcEEEeeCccccccCcCcCCCCCCccE
Q psy10487         81 LNLQRIYLKNSGIR-EVHRDTF-KYLTILVEVDLSDNQIAWLH-QDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT  157 (610)
Q Consensus        81 ~~L~~L~L~~n~l~-~i~~~~f-~~l~~L~~LdLs~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  157 (610)
                      .+|++|++++...- .-.+..+ ..++.|+.|.+++-.+..-. ...+.++++|..||+++.+++.+.  .++.|.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHHH
Confidence            35666666664321 1111122 35666777776665443221 123455667777777777776662  3566666666


Q ss_pred             EEccCccccc-cCHHHhhcCccccccccccccccccCc------ccccCCCcccEEecCCCcc
Q psy10487        158 IELQHCQIHS-VHKDALIHLTALESLNLNGNRLKHLSE------SVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       158 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~L~~l~l~~N~~  213 (610)
                      |.+.+=.+.. ..-..+.+|++|+.||+|..+......      +....+++|+.||.++...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            6655433332 111234566777777777654433321      1122356677777666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.92  E-value=0.0035  Score=65.08  Aligned_cols=133  Identities=17%  Similarity=0.255  Sum_probs=83.6

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCC-CcccchhhhcCCCCCcEEEccCC-CCCCCCcccccCCCCCc
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYLTILVEVDLSDN-QIAWLHQDTFLGNDRLK  132 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdLs~n-~l~~l~~~~f~~l~~L~  132 (610)
                      .+++.|++++|.|+.++  .+    ..+|+.|.+++|. +..++ +.+  ..+|++|++++| ++..++       .+|+
T Consensus        52 ~~l~~L~Is~c~L~sLP--~L----P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe  115 (426)
T PRK15386         52 RASGRLYIKDCDIESLP--VL----PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLP-------ESVR  115 (426)
T ss_pred             cCCCEEEeCCCCCcccC--CC----CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccc-------cccc
Confidence            47889999999999887  22    2379999998864 54443 333  357899999988 666554       4578


Q ss_pred             EEEeeCccccccCcCcCCCCCCccEEEccCcc-ccccCHHHhhcC-ccccccccccccccccCcccccCCCcccEEecCC
Q psy10487        133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQ-IHSVHKDALIHL-TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG  210 (610)
Q Consensus       133 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~  210 (610)
                      .|+|..|.+..+..  +.  ++|+.|.+.+++ .......  ..+ .+|+.|++.+|....++.. +-  ..|+.|.++.
T Consensus       116 ~L~L~~n~~~~L~~--LP--ssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~LP~~-LP--~SLk~L~ls~  186 (426)
T PRK15386        116 SLEIKGSATDSIKN--VP--NGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIILPEK-LP--ESLQSITLHI  186 (426)
T ss_pred             eEEeCCCCCccccc--Cc--chHhheeccccccccccccc--cccCCcccEEEecCCCcccCccc-cc--ccCcEEEecc
Confidence            88887776544321  11  467777775433 1111000  112 5789999998876554432 21  3677888766


Q ss_pred             Cc
Q psy10487        211 NP  212 (610)
Q Consensus       211 N~  212 (610)
                      |.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            53

>KOG2120|consensus

Probab=96.92  E-value=3.1e-05  Score=74.77  Aligned_cols=129  Identities=25%  Similarity=0.279  Sum_probs=69.0

Q ss_pred             CccEEEcccCCCcccc-hhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCc-cccccCc-CcCCCCCCccEE
Q psy10487         82 NLQRIYLKNSGIREVH-RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN-PITELRA-GQFPKLPYLKTI  158 (610)
Q Consensus        82 ~L~~L~L~~n~l~~i~-~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L  158 (610)
                      .|++|+|++..|+.-. ...++.+.+|+.|.|.++++.+-....+....+|+.|+|+.+ .++.... -.|..+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4667777666655321 133556666777777777776655556666677777777654 3332211 124456677777


Q ss_pred             EccCccccccCHHH-hhcC-cccccccccccccc----ccCcccccCCCcccEEecCCC
Q psy10487        159 ELQHCQIHSVHKDA-LIHL-TALESLNLNGNRLK----HLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       159 ~L~~n~l~~~~~~~-~~~l-~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~l~l~~N  211 (610)
                      +|+.|.+..-.... ..+. .+|..|+|++.+-.    ++ ......+++|..|||++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccc
Confidence            77776654432221 1222 35666666654211    11 011234566667777664

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.91  E-value=0.0033  Score=51.84  Aligned_cols=85  Identities=14%  Similarity=0.297  Sum_probs=52.6

Q ss_pred             CCCceeeee-cceEeecCceEEEEEEEEecC--C-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        259 CPPNVTIKE-SMVIREAGGNVTMSCYVYGDP--E-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       259 c~P~i~~~~-~~~~v~~G~~v~l~C~~~g~P--~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +.|.+...+ .......++.++|.|.+.|.-  . ..|+|.++|.. .  ........+.++.+...+.|.+..-.-...
T Consensus         2 ~~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~--~~~t~~~~~~dgTys~~S~L~v~~~~W~~g   78 (99)
T cd04986           2 CKPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E--AVQTSAESDQCGCYSVSSVLPGCAEEWNKG   78 (99)
T ss_pred             CCCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C--cEEcCcccCCCCCEEEEEEEEeCHHHhcCC
Confidence            356666553 333344678899999999844  3 46999999876 1  111112223355667777888763332333


Q ss_pred             eEEEEEeecCCc
Q psy10487        335 GEYTCYAENIRG  346 (610)
Q Consensus       335 G~Y~C~a~N~~G  346 (610)
                      ..|+|++.....
T Consensus        79 ~~ytC~V~H~~l   90 (99)
T cd04986          79 EPFACTVTHPEG   90 (99)
T ss_pred             CeEEEEEECCCc
Confidence            469999987653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.86  E-value=0.00079  Score=53.94  Aligned_cols=28  Identities=18%  Similarity=0.163  Sum_probs=25.2

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|+
T Consensus        46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753          46 SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            4567999999999999999999999885

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.82  E-value=0.0011  Score=52.34  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.3

Q ss_pred             cccceeeeeeeeccCcceeeeecCC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      .+..|.|.++ .+|+|.|+|.|.|+
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4568999999 99999999999985

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.81  E-value=0.00082  Score=54.98  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .++.|.|.+++.+|+|.|+|.|+|..|........
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            55689999999999999999999998876665544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.76  E-value=0.0049  Score=52.94  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEE---ec-cCCc-cce-ee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQV---LH-NSSF-DLL-EE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~---l~-~~~~-~~~-~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .|....+.+|++++|.|...+.-  ...+.|++  .|+.   +. .... ... ..  ..++....     ....|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            35567789999999999876543  45699998  2221   10 0000 000 00  01111111     123799999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.75  E-value=0.0017  Score=51.95  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=30.2

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ..|.|.+++.+|+|.|.|.|.|..|..+.+.+|.
T Consensus        51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729          51 WTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            4689999999999999999999999988877764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>KOG2739|consensus

Probab=96.73  E-value=0.00059  Score=65.25  Aligned_cols=102  Identities=26%  Similarity=0.278  Sum_probs=57.3

Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccc--cccCcCcCCCCCCccEEEccCccccccCH-HHhhcCccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI--TELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTAL  179 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  179 (610)
                      .+..|+.|.+.+..++.+.  .|-.|++|+.|.++.|.+  ..--.-...++++|++|+|++|+|+-+.. ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445555666666665553  255567788888888733  32111123345778888888887764321 233455667


Q ss_pred             cccccccccccccCc---ccccCCCcccEE
Q psy10487        180 ESLNLNGNRLKHLSE---SVFFPTPNLKTL  206 (610)
Q Consensus       180 ~~L~L~~n~l~~~~~---~~~~~~~~L~~l  206 (610)
                      ..|++.+|..+.+..   .+|.-+++|+.|
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L  148 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYL  148 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccc
Confidence            777777766555332   344444555544

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.73  E-value=0.0029  Score=53.08  Aligned_cols=73  Identities=23%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             EeecCceEEEEEEEEecCCCeEEEEeCC----EE---ec-cCCcccee-ec----cCCcee---eeeeEEEEEecCCCCC
Q psy10487        271 IREAGGNVTMSCYVYGDPEPTILWLLNG----QV---LH-NSSFDLLE-EE----EGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~P~p~v~W~~~g----~~---l~-~~~~~~~~-~~----~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      .+.+|++|+|.|...+.-...+.|++..    ..   +. ........ ..    ..+...   .....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            4678999999999866555679999832    11   11 00000000 00    010000   1234799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>KOG2123|consensus

Probab=96.70  E-value=0.00011  Score=70.43  Aligned_cols=101  Identities=25%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHH-HhhcCccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD-ALIHLTALES  181 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~  181 (610)
                      .+.+.+.|++.++.|.+|.  ....++.|+.|.|+-|.|+.+.+  |..+++|+.|+|..|.|..+..- -+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            3455667777777777764  35667777777887777777765  66777777777777777766432 2356677777


Q ss_pred             cccccccccccCc-----ccccCCCcccEEe
Q psy10487        182 LNLNGNRLKHLSE-----SVFFPTPNLKTLS  207 (610)
Q Consensus       182 L~L~~n~l~~~~~-----~~~~~~~~L~~l~  207 (610)
                      |-|..|.-.+-..     .++.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777765443322     2344456666553

>PHA03376 BARF1; Provisional

Probab=96.65  E-value=0.014  Score=52.89  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             ceEeecCceEEEEEEEE---ecCCCeEEEEeCC----EEec-cCCccceeec-cCCcee-----eeeeEEEEEecCCCCC
Q psy10487        269 MVIREAGGNVTMSCYVY---GDPEPTILWLLNG----QVLH-NSSFDLLEEE-EGDALF-----EKSVSITLFNVTDLDA  334 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~---g~P~p~v~W~~~g----~~l~-~~~~~~~~~~-~~~~~~-----~~~~~L~I~~v~~~D~  334 (610)
                      .+.+..|+.+.|.|.-.   ..+.-.|.|+|.+    ..+. .......... ..++..     ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45567899999999864   3366789999942    2221 1111111111 111111     1245899999999999


Q ss_pred             eEEEEEeecCCcce
Q psy10487        335 GEYTCYAENIRGNA  348 (610)
Q Consensus       335 G~Y~C~a~N~~G~~  348 (610)
                      |.|+|..+-.....
T Consensus       100 GtY~C~fQkge~~~  113 (221)
T PHA03376        100 GNYLCRMKLGETEV  113 (221)
T ss_pred             ceEEEEEEcCCCce
Confidence            99999997755433

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.65  E-value=0.003  Score=47.02  Aligned_cols=52  Identities=35%  Similarity=0.510  Sum_probs=35.4

Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      ..|.+|+|+|...+.   .+.|.+|+..+.....                .+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------------eEEeeccC-CCCceEEEEeCCC
Confidence            358899999965432   2999999865554221                33333444 8899999999653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.56  E-value=0.0034  Score=51.24  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=32.5

Q ss_pred             cccceeeeeeeeccCcceeeeec-CCCcceeeeeeccccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEAL-GSQPDMELIEQSLAME  459 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~-N~~G~~~~~~~l~v~~  459 (610)
                      .++.|.|.+++.+|+|.|+|.|. |..|......+|.|++
T Consensus        51 ~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          51 TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence            34569999999999999999998 5777777777887765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00406 IGv Immunoglobulin V-Type

Probab=96.52  E-value=0.0048  Score=48.65  Aligned_cols=65  Identities=25%  Similarity=0.315  Sum_probs=37.6

Q ss_pred             eEEEEEEEEecCCC--eEEEEeCCE----E-eccCC-ccceee---ccCCcee-----eeeeEEEEEecCCCCCeEEEEE
Q psy10487        277 NVTMSCYVYGDPEP--TILWLLNGQ----V-LHNSS-FDLLEE---EEGDALF-----EKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       277 ~v~l~C~~~g~P~p--~v~W~~~g~----~-l~~~~-~~~~~~---~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      +++|.|.+.....+  .+.|++...    . +.... ......   ..++..+     .....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            37899998765554  799998432    1 11110 000000   0111111     1235799999999999999996


Q ss_pred             e
Q psy10487        341 A  341 (610)
Q Consensus       341 a  341 (610)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>KOG1026|consensus

Probab=96.49  E-value=0.003  Score=69.70  Aligned_cols=136  Identities=24%  Similarity=0.306  Sum_probs=79.0

Q ss_pred             ccEEecCCCcccccCCchhhHHHHhhc-cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEE
Q psy10487        203 LKTLSLDGNPWCCDCHLRSFRNWLLKS-KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMS  281 (610)
Q Consensus       203 L~~l~l~~N~~~c~c~l~~~~~~l~~~-~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~  281 (610)
                      +..+.+..|++.|.|...|...|.... ......+.|...... +.....  .......+..........+..|..+++.
T Consensus       137 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~  213 (774)
T KOG1026|consen  137 LTELSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSN-GTVANE--SIQLCGEIENRIRAANLTVEEGSSITLK  213 (774)
T ss_pred             cchhhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCC-ceehhh--hhhhhcchhhhhhhhhhhhcccchheee
Confidence            344556669999999999877544333 122233455443331 110000  0001112222233335677889999999


Q ss_pred             EEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        282 CYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       282 C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.+.+.|.|.+.|+.+.............-.        .-...+.+        ++|.++|..|....++.+.+.
T Consensus       214 c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--------~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~  273 (774)
T KOG1026|consen  214 CSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--------SECEVLEN--------DLCIAENAVARSNPSILLVVD  273 (774)
T ss_pred             eecccCCCcceeeecccccccCCCccccccc--------ccceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence            9999999999999987765544322111110        01222222        999999999998877777663

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.43  E-value=0.025  Score=46.40  Aligned_cols=74  Identities=14%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             ceEeecCceEEE-EEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        269 MVIREAGGNVTM-SCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       269 ~~~v~~G~~v~l-~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ...+.+|+.+.+ .|.+ .|.|.+.|+|+.+..-...   . ......++.+...+.+.+..-...|.-.++|++....-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---S-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---e-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            445678888888 8987 5889999999986332111   1 11222233566777888866666677789999988743

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.41  E-value=0.0025  Score=52.26  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=27.4

Q ss_pred             ccccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      ....++.|.|.+|+.+|+|.|+|.|+|.++..
T Consensus        55 ~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          55 VSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             EeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            34457899999999999999999999977654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>KOG2120|consensus

Probab=96.37  E-value=0.00042  Score=67.19  Aligned_cols=153  Identities=21%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             CccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC-CCCCCCc-ccccCCCCCc
Q psy10487         56 DIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN-QIAWLHQ-DTFLGNDRLK  132 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n-~l~~l~~-~~f~~l~~L~  132 (610)
                      .++.|||++..|+.-.- ..+.  .+.+|+.|.|.++++..-....+.+-.+|+.|+|+.+ .++.... -.|..++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            58999999888764322 2233  4678899999998888766666778888889998874 4554322 2356678888


Q ss_pred             EEEeeCccccccCc-CcCCC-CCCccEEEccCcccc--ccCHHH-hhcCcccccccccccc-ccccCcccccCCCcccEE
Q psy10487        133 VLYLNGNPITELRA-GQFPK-LPYLKTIELQHCQIH--SVHKDA-LIHLTALESLNLNGNR-LKHLSESVFFPTPNLKTL  206 (610)
Q Consensus       133 ~L~Ls~N~l~~l~~-~~~~~-l~~L~~L~L~~n~l~--~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l  206 (610)
                      .|+|+.+.+..-.- -...+ -++|..|+|++++-.  .-+-.. ...+++|.+|||+.|. ++.-....|..++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            88888776543111 00111 145666666654211  111111 1345666666666542 322222233345555555


Q ss_pred             ecCC
Q psy10487        207 SLDG  210 (610)
Q Consensus       207 ~l~~  210 (610)
                      .++.
T Consensus       344 SlsR  347 (419)
T KOG2120|consen  344 SLSR  347 (419)
T ss_pred             ehhh
Confidence            5544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.32  E-value=0.0051  Score=59.09  Aligned_cols=132  Identities=19%  Similarity=0.201  Sum_probs=68.0

Q ss_pred             CCCCccEEEcccCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcccc-------------cCCCCCcEEEeeCccc
Q psy10487         79 GLLNLQRIYLKNSGIREVH----RDTFKYLTILVEVDLSDNQIAWLHQDTF-------------LGNDRLKVLYLNGNPI  141 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~LdLs~n~l~~l~~~~f-------------~~l~~L~~L~Ls~N~l  141 (610)
                      +++.|++.+|++|-+..--    .+.++....|.+|.|++|.+.-+...-+             ..-+.|+.++...|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            4566666666666544211    1234555666666666666543322111             2235666777766666


Q ss_pred             cccCcC----cCCCCCCccEEEccCccccccCH-----HHhhcCccccccccccccccccCc----ccccCCCcccEEec
Q psy10487        142 TELRAG----QFPKLPYLKTIELQHCQIHSVHK-----DALIHLTALESLNLNGNRLKHLSE----SVFFPTPNLKTLSL  208 (610)
Q Consensus       142 ~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~l~l  208 (610)
                      ...+..    .|..-..|+.+.+..|.|..-..     ..+..+.+|+.|||+.|-++....    ..+..++.|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            544321    11111456666666666653311     122345677777777776654332    23334555666665


Q ss_pred             CC
Q psy10487        209 DG  210 (610)
Q Consensus       209 ~~  210 (610)
                      .+
T Consensus       250 nD  251 (388)
T COG5238         250 ND  251 (388)
T ss_pred             cc
Confidence            44

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.20  E-value=0.0036  Score=51.86  Aligned_cols=38  Identities=11%  Similarity=0.019  Sum_probs=32.9

Q ss_pred             cccceeeeeeeeccCcceeeeecC-CCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALG-SQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v~  458 (610)
                      .+.+|.|.+++.+|+|.|.|...| ..|..+....|.|+
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            556799999999999999999999 78888888877663

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02633 hypothetical protein; Provisional

Probab=96.18  E-value=0.0079  Score=43.90  Aligned_cols=41  Identities=10%  Similarity=-0.060  Sum_probs=35.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ....|.|.++..+|+|.|.|+.+|..=-.+++..+.|..++
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            55579999999999999999999988888888888888654

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.13  E-value=0.0071  Score=49.75  Aligned_cols=23  Identities=13%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             ccceeeeeeeeccCcceeeeecC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALG  444 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N  444 (610)
                      +..|.|.+|+.+|+|.|+|.|..
T Consensus        61 ~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          61 ELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             eEEEEECCCCcccCEEEEEEEEe
Confidence            46899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=96.03  E-value=0.0072  Score=49.02  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             ccceeeeeeeeccCcceeeeecCCC-cceeeeeeccccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQ-PDMELIEQSLAME  459 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~~~~~~l~v~~  459 (610)
                      ...|.|.+++.+|+|.|.|.|.|.. +....+.+|.|++
T Consensus        50 ~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          50 EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            3469999999999999999999754 4445556666553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>KOG4597|consensus

Probab=95.88  E-value=0.0099  Score=60.96  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe---CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL---NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~---~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +..-+....+-+|++..++|.+.|.|.+.|.|.+   |+..+... ..++.   ++-.+.....|.|.+....|+|.|+|
T Consensus       199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~---e~p~vtstcql~ic~ewq~~a~w~tC  274 (560)
T KOG4597|consen  199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTV---ENPVVTSTCQLVICNEWQADAGWYTC  274 (560)
T ss_pred             cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec-Ccccc---CCcceeeeeeEEEcchhhcCCCceee
Confidence            3334455667889999999999999999999986   44333222 11111   11223556789999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|.+|...+.+.+.+
T Consensus       275 s~rcg~g~~~rdv~c~s  291 (560)
T KOG4597|consen  275 SARCGAGFLRRDVPCSS  291 (560)
T ss_pred             ccccccceeeccceeee
Confidence            99999999988888876

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=95.87  E-value=0.0058  Score=50.78  Aligned_cols=37  Identities=11%  Similarity=-0.075  Sum_probs=31.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ....|.|.+++.+|+|.|.|.+.|..|..+....|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            3458999999999999999999998887777666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA02633 hypothetical protein; Provisional

Probab=95.80  E-value=0.019  Score=41.99  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             eEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       322 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ..|.|.++..+|+|.|.|+..|..-....++.|.|.
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            389999999999999999999988778888888874

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.79  E-value=0.023  Score=42.67  Aligned_cols=50  Identities=22%  Similarity=0.421  Sum_probs=36.8

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..+.|.|.|.+    .-+|.|++ |..+....               ..+|.+-++..+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVS---------------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Cccccccc---------------ccEEeccCcccCCCcceEecCcc
Confidence            34578999975    25699999 65544321               12788888888889999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=95.76  E-value=0.0099  Score=43.74  Aligned_cols=28  Identities=21%  Similarity=0.150  Sum_probs=24.5

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      .....|.|.+++..|+|.|+|.+.|..|
T Consensus        36 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       36 ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            4456899999999999999999999765

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.69  E-value=0.015  Score=47.87  Aligned_cols=35  Identities=9%  Similarity=0.043  Sum_probs=27.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+..|.|.+++.+|+|.|+|.+.+..+. ...+.|+
T Consensus        60 ~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~   94 (95)
T cd07701          60 HELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLT   94 (95)
T ss_pred             CcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEEE
Confidence            4458999999999999999999985443 5555554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=95.56  E-value=0.0092  Score=49.65  Aligned_cols=37  Identities=11%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             cccceeeeeeeeccCcceeeeecC-CCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALG-SQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|+|.|.+.+ ..|..+....|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            456799999999999999999998 7777766666654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA03376 BARF1; Provisional

Probab=95.54  E-value=0.02  Score=51.96  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=38.3

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCcceeEecC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESH  470 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~ie~~  470 (610)
                      .+-.|.|.+++.+|.|+|+|...-..........|.++.  |..+.|.+.
T Consensus        85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~--~~~Lsv~a~  132 (221)
T PHA03376         85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK--PLTLSVHSE  132 (221)
T ss_pred             CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeee--cceEEEEec
Confidence            444799999999999999999988666666777888776  666777664

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=95.51  E-value=0.012  Score=48.23  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             cceeeeeeeeccCcceeeeecCCCccee
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      ..|.|.+++.+|+|+|.|.+.|..++.+
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccceEE
Confidence            4699999999999999999999888755

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=95.51  E-value=0.0099  Score=48.74  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      ...|.|.+|..+|+|.|+|+|+|..|..
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            3469999999999999999999987653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG1480|consensus

Probab=95.31  E-value=0.0028  Score=68.59  Aligned_cols=86  Identities=19%  Similarity=0.344  Sum_probs=64.5

Q ss_pred             ceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      .+...+....|.++..+.+.|+. .|.|...+.|++++..++.... ...        .....|++..+...|.|.|+|+
T Consensus       131 ~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n-~~~--------~~d~~li~~~arlsd~~nytc~  201 (909)
T KOG1480|consen  131 HFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDAN-VIR--------ASDHNLIISQARLSDSGNYTCE  201 (909)
T ss_pred             hhccChhhheecccccccccccCcccchhhhhhccccCCCCCcccc-chh--------hhcCCccccchhhhhcccceee
Confidence            34445566677888889999976 6899999999999988877322 111        2224799999999999999999


Q ss_pred             eecCCcce---eEEEEEEc
Q psy10487        341 AENIRGNA---SGEISLDL  356 (610)
Q Consensus       341 a~N~~G~~---~~~~~L~V  356 (610)
                      |.|..+..   ..++.+.|
T Consensus       202 a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  202 ATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             eehhhccccccceEEEEEE
Confidence            99999864   34555555

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=95.30  E-value=0.016  Score=47.94  Aligned_cols=37  Identities=14%  Similarity=0.023  Sum_probs=31.2

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ..+..|.|..+..+|+|.|+|+++|+..-.++...|.
T Consensus        67 ~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          67 KEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence            4566899999999999999999999887777766554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=95.30  E-value=0.011  Score=49.74  Aligned_cols=39  Identities=13%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ..+..|.|.+++.+|+|+|.|.+.+..+..+...+|.|.
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            356689999999999999999999988776766666553

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.12  E-value=0.013  Score=49.29  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=31.5

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.+++.+|+|+|.|.+.+..|..+...+|.|
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v  102 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRL  102 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEE
Confidence            457999999999999999999999988877777655

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=95.11  E-value=0.017  Score=47.46  Aligned_cols=38  Identities=8%  Similarity=-0.026  Sum_probs=32.2

Q ss_pred             ccccceeeeeeeeccCcceeeee-cCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEA-LGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A-~N~~G~~~~~~~l~v  457 (610)
                      ..+.+|.|.+++.+|+|.|.|.. +...|+.+.+..|.|
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            45678999999999999999996 458899888877765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=95.08  E-value=0.022  Score=42.67  Aligned_cols=18  Identities=28%  Similarity=0.320  Sum_probs=17.4

Q ss_pred             eeeeeeeeccCcceeeee
Q psy10487        425 LLDVSITTTDRHTGSCEA  442 (610)
Q Consensus       425 L~i~~v~~~D~G~Y~C~A  442 (610)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=94.92  E-value=0.019  Score=47.12  Aligned_cols=34  Identities=9%  Similarity=0.037  Sum_probs=26.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      +..|.|.+++.+|+|.|+|.+.+... .+..+.++
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~   94 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVT   94 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEE
Confidence            45799999999999999999998653 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.85  E-value=0.044  Score=47.23  Aligned_cols=83  Identities=16%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             cCceEEEEEEEEe-----cCCCeEEEEeCCEEeccCCccceee-ccC------CceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        274 AGGNVTMSCYVYG-----DPEPTILWLLNGQVLHNSSFDLLEE-EEG------DALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       274 ~G~~v~l~C~~~g-----~P~p~v~W~~~g~~l~~~~~~~~~~-~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      -.++|.+.|.+..     .+...|.|.+++..+-..+...... ...      ........+|.+.....- .|.|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            4788999999864     2445699999988764332211100 000      001122346888875555 89999999


Q ss_pred             ecCCcceeEEEEEEcC
Q psy10487        342 ENIRGNASGEISLDLP  357 (610)
Q Consensus       342 ~N~~G~~~~~~~L~V~  357 (610)
                      .......+..+.|...
T Consensus       105 t~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  105 TELSREGETTIELKYR  120 (130)
T ss_dssp             EETTEEEEEEEEEEE-
T ss_pred             EecCCCceEEEEEEEE
Confidence            9998888888888773

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=94.68  E-value=0.022  Score=47.07  Aligned_cols=42  Identities=12%  Similarity=-0.025  Sum_probs=31.1

Q ss_pred             ccccccccceeeeeeeeccCcceeeeecCCCcce-eeeeeccc
Q psy10487        416 VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDM-ELIEQSLA  457 (610)
Q Consensus       416 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v  457 (610)
                      +.+..++..|.|.+++.+|+|.|.|.+.+..|.. ...+.|.|
T Consensus        54 ~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          54 VNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            3344456789999999999999999999987754 33344443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>smart00409 IG Immunoglobulin

Probab=94.65  E-value=0.059  Score=42.15  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.++...|+|.|.|.+.|..|.......|.|
T Consensus        50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            467999999999999999999998888776655543

>smart00410 IG_like Immunoglobulin like

Probab=94.65  E-value=0.059  Score=42.15  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.|.++...|+|.|.|.+.|..|.......|.|
T Consensus        50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            467999999999999999999998888776655543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.56  E-value=0.027  Score=46.42  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             cccceeeeeeeeccCcceeeeecC-CCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALG-SQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|.|.+.+ ..|..+....|.|
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            456899999999999999999875 6788777776655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=94.56  E-value=0.029  Score=47.01  Aligned_cols=36  Identities=11%  Similarity=-0.019  Sum_probs=28.0

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCc-ceeeeeec
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQP-DMELIEQS  455 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l  455 (610)
                      ..+++|.|.+++.+|+|.|+|.+.|..+ ..+...+|
T Consensus        67 ~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          67 YPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             eCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence            3467899999999999999999999763 44444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=94.54  E-value=0.021  Score=45.96  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      .++.|.|.+++.+|+|.|+|.|.+..
T Consensus        46 ~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          46 YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34579999999999999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=94.49  E-value=0.047  Score=44.67  Aligned_cols=31  Identities=19%  Similarity=0.115  Sum_probs=26.4

Q ss_pred             ccccccceeeeeeeeccCc-ceeeeecCCCcc
Q psy10487        418 FNDQEKKLLDVSITTTDRH-TGSCEALGSQPD  448 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~  448 (610)
                      ....++.|.|.+|+.+|+| .|.|.|+|....
T Consensus        53 ~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          53 SMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             EECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            4456799999999999999 799999997543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=94.42  E-value=0.02  Score=44.12  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.3

Q ss_pred             ccccceeeeeeeeccCcceeeeecC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALG  444 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N  444 (610)
                      .....|.+.++..+|.|.|+|+|.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4566899999999999999999987

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=94.30  E-value=0.046  Score=42.69  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             eeeeeeeeccCcceeeeecCCCc
Q psy10487        425 LLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       425 L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      +.+.+++.+|+|.|+|.|.|..|
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTE
T ss_pred             eeeeeeccccCEEEEEEEEeCCC
Confidence            77889999999999999999655

...

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.26  E-value=0.23  Score=41.90  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             eeecceEeecCceEEEEEEEEecCC---CeEEEEe--CCE-EeccC---CccceeeccCCce-----eeeeeEEEEEecC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPE---PTILWLL--NGQ-VLHNS---SFDLLEEEEGDAL-----FEKSVSITLFNVT  330 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~--~g~-~l~~~---~~~~~~~~~~~~~-----~~~~~~L~I~~v~  330 (610)
                      +.+....+..|+.++|.|.++|.-.   -.++|+|  +|. +.-..   ...+.....++..     ......|.|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            3445667788899999999977543   3578998  331 11100   0001100011000     0123589999999


Q ss_pred             CCCCeEEEEEe
Q psy10487        331 DLDAGEYTCYA  341 (610)
Q Consensus       331 ~~D~G~Y~C~a  341 (610)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=93.73  E-value=0.054  Score=44.65  Aligned_cols=36  Identities=11%  Similarity=-0.023  Sum_probs=32.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...|.+..+..+|+|.|+|.|.|+.+.++.++.|.+
T Consensus        64 ~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v   99 (101)
T cd05860          64 VSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV   99 (101)
T ss_pred             EEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence            357999999999999999999999999999888765

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=93.54  E-value=0.046  Score=46.31  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=30.3

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .....|.|.+++.+|+|+|.|.+....+..+.+..|.|
T Consensus        69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            34567999999999999999999987666666555554

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.43  E-value=0.048  Score=31.29  Aligned_cols=12  Identities=42%  Similarity=0.589  Sum_probs=4.8

Q ss_pred             cEEEeeCccccc
Q psy10487        132 KVLYLNGNPITE  143 (610)
Q Consensus       132 ~~L~Ls~N~l~~  143 (610)
                      ++|+|++|.++.
T Consensus         3 ~~Ldls~n~l~~   14 (22)
T PF00560_consen    3 EYLDLSGNNLTS   14 (22)
T ss_dssp             SEEEETSSEESE
T ss_pred             cEEECCCCcCEe
Confidence            334444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.38  E-value=0.042  Score=31.52  Aligned_cols=14  Identities=14%  Similarity=0.373  Sum_probs=5.8

Q ss_pred             ccEEEcccCCCccc
Q psy10487         83 LQRIYLKNSGIREV   96 (610)
Q Consensus        83 L~~L~L~~n~l~~i   96 (610)
                      |++|+|++|+|+.+
T Consensus         2 L~~Ldls~n~l~~i   15 (22)
T PF00560_consen    2 LEYLDLSGNNLTSI   15 (22)
T ss_dssp             ESEEEETSSEESEE
T ss_pred             ccEEECCCCcCEeC
Confidence            34444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.36  E-value=0.64  Score=36.67  Aligned_cols=52  Identities=19%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe-ecCCcceeEEEEEEc
Q psy10487        289 EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA-ENIRGNASGEISLDL  356 (610)
Q Consensus       289 ~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~~~~~~~L~V  356 (610)
                      .|++.|.-.+.......                ........+..|+|.++|.| .+..-.....+.|.|
T Consensus        26 ~~~~~l~~~~~k~~~~~----------------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETK----------------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEES----------------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccccccc----------------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            46677776665443322                26677788899999999999 666655666666655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=93.30  E-value=0.068  Score=45.36  Aligned_cols=37  Identities=16%  Similarity=0.122  Sum_probs=29.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|+|.|.+.+.....+....|.|
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence            5678999999999999999999987666555544443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=93.02  E-value=0.077  Score=43.02  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=25.3

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      +..|.|.+++.+|+|.|.|......|...
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~   84 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTNGVTE   84 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence            37899999999999999999999876543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=93.02  E-value=0.18  Score=39.80  Aligned_cols=28  Identities=18%  Similarity=-0.019  Sum_probs=23.6

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      .+.|.+.-...+|.+.|+|+|.|.++..
T Consensus        42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          42 SNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4468888888889999999999988754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=92.90  E-value=0.064  Score=45.84  Aligned_cols=29  Identities=14%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ..+.+|.|.+++.+|.|+|+|.+.|..+.
T Consensus        77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          77 RKDGSIVIHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             cCeeEEEEccCCcccCEEEEEEEEcCCCc
Confidence            45668999999999999999999996553

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.71  E-value=0.094  Score=31.40  Aligned_cols=21  Identities=43%  Similarity=0.561  Sum_probs=11.7

Q ss_pred             CCCcEEEccCCCCCCCCcccc
Q psy10487        105 TILVEVDLSDNQIAWLHQDTF  125 (610)
Q Consensus       105 ~~L~~LdLs~n~l~~l~~~~f  125 (610)
                      .+|++|+|++|+|..++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555666666655555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.71  E-value=0.094  Score=31.40  Aligned_cols=21  Identities=43%  Similarity=0.561  Sum_probs=11.7

Q ss_pred             CCCcEEEccCCCCCCCCcccc
Q psy10487        105 TILVEVDLSDNQIAWLHQDTF  125 (610)
Q Consensus       105 ~~L~~LdLs~n~l~~l~~~~f  125 (610)
                      .+|++|+|++|+|..++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555666666655555544

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=92.66  E-value=0.086  Score=44.87  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=31.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+.+|.|.+++.+|+|.|.|...+.....+...+|.|
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            4568999999999999999999998877777666654

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=92.45  E-value=0.1  Score=42.84  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=27.7

Q ss_pred             cccceeeeeeeeccCcceeeeecC-CCcceeeeee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALG-SQPDMELIEQ  454 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~  454 (610)
                      .+.+|.|.+++.+|+|.|+|.... ..|..+....
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            567899999999999999999876 5776655443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=92.40  E-value=0.11  Score=42.85  Aligned_cols=37  Identities=8%  Similarity=-0.093  Sum_probs=30.0

Q ss_pred             cccceeeeeeeeccCcceeeeecC-CCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALG-SQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|.|...+ ..|..+....|.|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            456799999999999999999764 6777777666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03042 CD47-like protein; Provisional

Probab=92.22  E-value=0.56  Score=45.26  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=48.2

Q ss_pred             cCceEEEEEEEEec-----CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        274 AGGNVTMSCYVYGD-----PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-----P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      -.+++.+.|.+..-     -.-.+.|.+++..+...+..            ..++|.+.... .-.|.|+|+|.+...+.
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFSK-NLSGNYTCEAINKFNKI   96 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence            36778999988542     35669999999887544321            11356655433 34899999999877777


Q ss_pred             eEEEEEEc
Q psy10487        349 SGEISLDL  356 (610)
Q Consensus       349 ~~~~~L~V  356 (610)
                      ...+.|+-
T Consensus        97 k~~IeLk~  104 (286)
T PHA03042         97 KNTIELQY  104 (286)
T ss_pred             cEEEEEEE
Confidence            77777765

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=92.17  E-value=0.082  Score=44.68  Aligned_cols=37  Identities=16%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|.|.........+....|.|
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence            4568999999999999999999986666666666554

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=92.10  E-value=0.59  Score=38.26  Aligned_cols=70  Identities=30%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             eecCceEEEEEEEEe-cCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EEEEEeecC
Q psy10487        272 REAGGNVTMSCYVYG-DPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAENI  344 (610)
Q Consensus       272 v~~G~~v~l~C~~~g-~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~  344 (610)
                      +.+|..+++.|.+.+ .|.  .+|.|++....+....+....  +.+........++|.- +.+|.| .|+|.|.=.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~--~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDM--DKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceeccccccccc--ccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            378999999999974 455  579999876665544321100  0000001123455554 477777 899998643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.08  E-value=0.1  Score=44.65  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=24.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .+..|.|.+++.+|+|+|.|.+.|..+.
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            4557999999999999999999996553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.84  E-value=0.14  Score=30.66  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=14.6

Q ss_pred             CCccEEEcccCCCcccchhhhc
Q psy10487         81 LNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        81 ~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .+|+.|+|.+|+|..+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666777777777777666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.84  E-value=0.14  Score=30.66  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=14.6

Q ss_pred             CCccEEEcccCCCcccchhhhc
Q psy10487         81 LNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        81 ~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .+|+.|+|.+|+|..+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666777777777777666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.27  E-value=0.13  Score=27.36  Aligned_cols=11  Identities=45%  Similarity=0.755  Sum_probs=3.3

Q ss_pred             CcEEEccCCCC
Q psy10487        107 LVEVDLSDNQI  117 (610)
Q Consensus       107 L~~LdLs~n~l  117 (610)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444433

...

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=91.24  E-value=0.15  Score=43.59  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=23.3

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus        78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          78 KDASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             CeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            345799999999999999999998644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG3864|consensus

Probab=90.88  E-value=0.053  Score=50.19  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcc-ccccCcCcCC-CCCCccEEEccCc-cccccCHHHhhcCcccccc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFP-KLPYLKTIELQHC-QIHSVHKDALIHLTALESL  182 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  182 (610)
                      .++.+|.++..|..+.-+-+.++++|+.|.+.++. +.+..-+-++ ..++|+.|+|++| +|+.-.-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46777777777776666666777777777776653 1111111111 2467888888876 5665544555666777766


Q ss_pred             cccc
Q psy10487        183 NLNG  186 (610)
Q Consensus       183 ~L~~  186 (610)
                      .|.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6543

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.70  E-value=1.1  Score=45.22  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeC---------C---EEeccCC--c------cceeeccCC-
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLN---------G---QVLHNSS--F------DLLEEEEGD-  315 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~---------g---~~l~~~~--~------~~~~~~~~~-  315 (610)
                      .+|.+.+.-..   ..+ .++|+|.|.|.-+.  .++|.++         |   ..+....  .      ......++| 
T Consensus       202 vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~Dg  277 (338)
T PHA02865        202 VTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDK  277 (338)
T ss_pred             CCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCC
Confidence            35666553321   112 57999999997554  5789999         3   1111100  0      001333445 


Q ss_pred             ceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        316 ALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       316 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +.+..+..++   +...+...|+|++....
T Consensus       278 gTfQ~~~~v~---v~~~~~~~Y~C~V~Hsg  304 (338)
T PHA02865        278 NTFSSTPSVR---VPTDMSNQIVCVVFHST  304 (338)
T ss_pred             CeeEEEEEEE---eCCCCCCCcEEEEEeCC
Confidence            3666666664   44667778999987644

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=90.45  E-value=0.35  Score=46.48  Aligned_cols=49  Identities=22%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             CCCeEEEEeCC-EEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        288 PEPTILWLLNG-QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       288 P~p~v~W~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ..|.+.|..++ +.+.+....         .....|.|.+.+...+++|.|+|...-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~---------nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYV---------NITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeE---------EEccCceEEeeccccccCCceEEEEEEEe
Confidence            56899999954 444433221         22445799999999999999999986543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=90.30  E-value=0.21  Score=40.51  Aligned_cols=26  Identities=12%  Similarity=0.101  Sum_probs=22.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      .....+.|.+|+.+|+|+|.|.+.|.
T Consensus        50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChhHCEEEEEEEECC
Confidence            34567999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG0473|consensus

Probab=88.92  E-value=0.022  Score=53.68  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             CCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEE
Q psy10487        127 GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTL  206 (610)
Q Consensus       127 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  206 (610)
                      ...+.+.|+|+.|++..+.. .|..++.|.+|+++.|++..+ +..+..+..+..+++..|.++.++. .+...++++.+
T Consensus        40 ~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchh
Confidence            33445555555555544433 355566666777777777655 3445666667777777777766654 45666777777


Q ss_pred             ecCCCcc
Q psy10487        207 SLDGNPW  213 (610)
Q Consensus       207 ~l~~N~~  213 (610)
                      ++.+|+|
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            7777764

>KOG0473|consensus

Probab=88.32  E-value=0.0096  Score=56.00  Aligned_cols=86  Identities=15%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE  180 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (610)
                      +......+.||++.|++..+.. .|+-+..|..|+|+.|.+..++. .+..+..+.++++..|++... |..+...++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhC-CccccccCCcc
Confidence            4445566667777776665553 35556666777777776666544 245555666666666666665 44566677777


Q ss_pred             ccccccccc
Q psy10487        181 SLNLNGNRL  189 (610)
Q Consensus       181 ~L~L~~n~l  189 (610)
                      .+++..|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            777766653

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=88.05  E-value=0.28  Score=41.12  Aligned_cols=27  Identities=15%  Similarity=0.047  Sum_probs=23.2

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      ....|.|.+++.+|+|.|.|.+.+..|
T Consensus        68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          68 KSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            345799999999999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=87.51  E-value=0.67  Score=37.06  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=23.7

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ..|.|..++.+|+|.|.|.|. ..|-.+..++
T Consensus        47 ~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~   77 (85)
T cd05872          47 DGLLILVTSPEHSGTYRCYSE-EEGFQQLVAS   77 (85)
T ss_pred             CCCEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence            348899999999999999988 4465554443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=87.26  E-value=0.26  Score=40.92  Aligned_cols=26  Identities=19%  Similarity=0.033  Sum_probs=23.2

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      .-.|.|.+++.+|+|.|.|.+.+..+
T Consensus        66 ~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          66 SFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCC
Confidence            44799999999999999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=87.06  E-value=3  Score=33.67  Aligned_cols=73  Identities=14%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             eEEEEEE-EEecCCCeEEEEeC--CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        277 NVTMSCY-VYGDPEPTILWLLN--GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       277 ~v~l~C~-~~g~P~p~v~W~~~--g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      .+.-.|. +.|.|+..|+|.-+  |..      ......+.++.+...+.+.+-.....|.-.-+|+++...-.....+.
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~   95 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEA------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT   95 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCce------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence            3567898 57999999999853  221      01111222334556667777777777888999999876555555555


Q ss_pred             EE
Q psy10487        354 LD  355 (610)
Q Consensus       354 L~  355 (610)
                      |.
T Consensus        96 L~   97 (98)
T cd05890          96 LN   97 (98)
T ss_pred             ec
Confidence            54

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=86.98  E-value=0.36  Score=40.46  Aligned_cols=24  Identities=21%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      ...|.|.+++.+|+|.|.|.....
T Consensus        78 ~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   78 NFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EEEEEESSESGGGEEEEEEEEEES
T ss_pred             eEEEEECCCCcCcCEEEEEEEEEC
Confidence            457999999999999999999886

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>KOG3864|consensus

Probab=86.51  E-value=0.095  Score=48.55  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=17.3

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccC
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS   91 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n   91 (610)
                      .++.+|-++..|....-+.+.  ++..|+.|.+.+|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHh--ccchhhhheeccc
Confidence            355566665555554444444  4455555555444

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=86.32  E-value=1  Score=35.49  Aligned_cols=25  Identities=16%  Similarity=0.058  Sum_probs=19.1

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .|.+.....+|.|.|+|.|.|..-.
T Consensus        47 ~L~i~~~~~~~~~~y~C~a~n~~l~   71 (82)
T cd05759          47 TLPITPSDHDTGRTFTCRARNEALP   71 (82)
T ss_pred             EEEEeCceecCCCEEEEEEcCccCC
Confidence            5666666667889999999996543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02982 hypothetical protein; Provisional

Probab=86.24  E-value=1.6  Score=40.44  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             cceEeecCceEEEEEEEE-ecCCCeEEEEeCCEE-eccCC-----ccc--eeeccCCc-----eeeeeeEEEEEecCCCC
Q psy10487        268 SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQV-LHNSS-----FDL--LEEEEGDA-----LFEKSVSITLFNVTDLD  333 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~-l~~~~-----~~~--~~~~~~~~-----~~~~~~~L~I~~v~~~D  333 (610)
                      .++....++.+.|.|... +.---+..|..+... +....     ...  ........     ..-..++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            345566789999999852 333456789985432 22110     000  00000000     01124799999999999


Q ss_pred             CeEEEEEeecCCcce
Q psy10487        334 AGEYTCYAENIRGNA  348 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~  348 (610)
                      .|-|+|+|....|..
T Consensus       112 ~GCYtc~~ks~~~k~  126 (251)
T PHA02982        112 LGCFTCEAKDAEGKE  126 (251)
T ss_pred             CCceEEEEecCCCch
Confidence            999999999877654

>KOG1480|consensus

Probab=85.73  E-value=0.28  Score=53.83  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=25.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      ..+..+++..+...|.|.|+|+|.|.++..+
T Consensus       180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  180 ASDHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             hhcCCccccchhhhhcccceeeeehhhcccc
Confidence            4556788999999999999999999777543

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=84.65  E-value=4.3  Score=33.55  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             eEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487        322 VSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL  356 (610)
Q Consensus       322 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V  356 (610)
                      .+|.|..++..|+|.|.-+++|..|... +.+++.|
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4899999999999999999999999873 3555544

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=84.46  E-value=0.49  Score=38.75  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=20.9

Q ss_pred             ccceeeeeeeeccCcceeeeecCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      +-.|.|.+++.+|+|.|.|.+...
T Consensus        61 ~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          61 ELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EEEEEECcCCcccCEEEEEEEEcc
Confidence            446999999999999999998763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=83.30  E-value=0.72  Score=38.85  Aligned_cols=26  Identities=15%  Similarity=0.010  Sum_probs=22.5

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      ...|.|.+++.+|+|.|.|.+.+..|
T Consensus        71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          71 RSSLTIKSAEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             ccEEEECCCChhhCEEEEEEeeCCCC
Confidence            45799999999999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00096 Ig Immunoglobulin domain

Probab=83.01  E-value=1.7  Score=31.62  Aligned_cols=28  Identities=25%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      .....|.+.+++..|.|.|.|.+.+..+
T Consensus        40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096          40 SGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             eeEEEEEECccCcccCcEEEEEEecCcC
Confidence            4455788999999999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03270 envelope glycoprotein C; Provisional

Probab=82.06  E-value=15  Score=38.25  Aligned_cols=86  Identities=15%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCC---eEEEEeCCEEeccCCccce-eeccCCceeeeeeEEEEEecCCCCC
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVLHNSSFDLL-EEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      -+|.+.+.+.  -+.+|+...-.|.+..+-+|   .+.|+.|+.++........ .....++ +...++|++........
T Consensus       220 r~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dG-fs~vStvtsea~~~~~~  296 (466)
T PHA03270        220 RRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDG-FSATSTLTSEARAGLAP  296 (466)
T ss_pred             cCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCC-eeEEEEEeccccccCCC
Confidence            3565554433  35679999999999776554   5899999998865333222 2222222 34555666554433222


Q ss_pred             -eEEEEEeecCCcc
Q psy10487        335 -GEYTCYAENIRGN  347 (610)
Q Consensus       335 -G~Y~C~a~N~~G~  347 (610)
                       -..+|.+.-..+.
T Consensus       297 PPsLrC~v~W~rd~  310 (466)
T PHA03270        297 PRNLTCEFTWHRDS  310 (466)
T ss_pred             CCCceEEEEEccCC
Confidence             3789998665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	610
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-21
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-18
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		8e-18
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-17
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-17
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-17
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-17
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-17
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-16
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		8e-16
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-15
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-15
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-15
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-13
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-12
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-12
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-11
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-11
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		7e-11
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-11
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-10
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-10
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-10
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-10
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-10
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-10
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-10
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-10
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-10
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		4e-10
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		4e-10
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		5e-10
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		4e-09
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		5e-07
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		4e-09
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		9e-09
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-08
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-08
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-08
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		7e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		8e-08
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-07
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		6e-07
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-07
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		8e-07
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		9e-07
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-06
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-06
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-06
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		4e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-06
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		8e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2ifg_A	347	Structure Of The Extracellular Segment Of Human Trk		2e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		3e-05
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-05
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-05
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		8e-05
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		1e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		2e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		2e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		3e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		3e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		3e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		4e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		4e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		4e-04
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		4e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		5e-04

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 41/338 (12%)
Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  LPS     +  L+L +N+++ +  +AF+ +    L+ ++L+N+ I  +    F  + 
Sbjct: 79  FNGLPS-----LNTLELFDNRLTTVPTQAFEYLS--KLRELWLRNNPIESIPSYAFNRVP 131
Query: 106 ILVEVDLSD-NQIAWLHQDTFLG--------------ND--------RLKVLYLNGNPIT 142
            L  +DL +  ++ ++ +  F G               D        RL+ L L+GN + 
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
            +R G F  L  L+ + L H Q+ ++ ++A   L +LE LNL+ N L  L   +F P   
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC 259
           L+ + L+ NPW C+C +  + +W LK  + S+   C     P  L+ ++  ++    F C
Sbjct: 252 LERVHLNHNPWHCNCDVL-WLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
              V ++    +    G         G    ++ WL  NG ++ + S+ +        L 
Sbjct: 311 YAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRV----RISVLH 366
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
           + +++ T  NVT  D G+YTC   N  GN +   +L++
Sbjct: 367 DGTLNFT--NVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 167/426 (39%), Gaps = 100/426 (23%)
Query: 12  CLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLT 71
           C+  TGS     CP  C C     K   +C   N   +P  + ++ ++L+L+ N+I  + 
Sbjct: 25  CVAETGSAQ--TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIK 80
Query: 72  KEAFKSI----------------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
             +FK +                      GL NL  + L ++ +  +    F YL+ L E
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 110 VDLSDN-------------------------QIAWLHQDTFLGNDRLKVLYL-------- 136
           + L +N                         +++++ +  F G   L+ L L        
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200
Query: 137 --------------NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182
                         +GN ++ +R G F  L +L+ + +   QI  + ++A  +L +L  +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE-- 240
           NL  N L  L   +F P  +L+ + L  NPW C+C +  + +W +K    S+   C    
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL-WLSWWIKDMAPSNTACCARCN 319
Query: 241 -PGMLQTKHWDDVKAQEFAC--------PPNVTIKESMVIR-EAGGNVTMSCYVYGDPEP 290
            P  L+ ++  ++    F C        P ++ + E M    +   + +++   +  P  
Sbjct: 320 TPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITP-- 377
Query: 291 TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG 350
                 NG V+ + ++ +      D       ++   NVT  D G YTC   N  GN + 
Sbjct: 378 ------NGTVMTHGAYKVRIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
Query: 351 EISLDL 356
             +L++
Sbjct: 426 SATLNV 431

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C   +      C+    T +P+ L   I  + L  N I  +   AF        
Sbjct: 5   CPAACTCSNNIVD----CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-------- 52
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                  S  +++ R           +DLS+NQI+ L  D F G   L  L L GN ITE
Sbjct: 53  -------SPYKKLRR-----------IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L    F  L  L+ + L   +I+ +  DA   L  L  L+L  N+L+ +++  F P   +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
           +T+ L  NP+ CDCHL+   ++L  + + +    CT P  L  K    +K+++F C
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 210

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C   +      C+    T +P+ L   I  + L  N I  +   AF        
Sbjct: 5   CPAACTCSNNIVD----CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-------- 52
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                  S  +++ R           +DLS+NQI+ L  D F G   L  L L GN ITE
Sbjct: 53  -------SPYKKLRR-----------IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L    F  L  L+ + L   +I+ +  DA   L  L  L+L  N+L+ +++  F P   +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
           +T+ L  NP+ CDCHL+   ++L  + + +    CT P  L  K    +K+++F C
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 210

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 3/204 (1%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           C     C    GKK   C+  +  ++PS + +D + LDL +  ++ L+   F+  GL  L
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L  + ++ +    F  LT L  + L++NQ+A L    F    +L  LYL GN +  
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L +G F +L  LK + L   Q+ S+   A   LT L++L+L+ N+L+ +    F     L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 204 KTLSLDGNPW-CCDCHLRSFRNWL 226
           +T++L GN + C  C +     W+
Sbjct: 182 QTITLFGNQFDCSRCEILYLSQWI 205

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 30  CKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-------- 81
           C     K S  C     TA+PS + +D + LDL +NK+S L  +AF  +  L        
Sbjct: 12  CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 82  --------------NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLG 127
                         NL+ +++ ++ ++ +    F  L  L E+ L  NQ+  L    F  
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 128 NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187
             +L  L L  N +  L  G F KL  LK + L + Q+  V + A   LT L++L L+ N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKS 229
           +LK + E  F     LK L L  NPW C C+ +     WL K 
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 29/236 (12%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP+ CRC+ T    +  C +     +P  +      L LNNN+ + L             
Sbjct: 5   CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVL------------- 47
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                + +GI       FK L  L +++ S+N+I  + +  F G   +  + L  N +  
Sbjct: 48  -----EATGI-------FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           ++   F  L  LKT+ L+  +I  V  D+ I L+++  L+L  N++  ++   F    +L
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
            TL+L  NP+ C+C+L     WL K ++ +    C +P  L+     DV  Q+F C
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTC 211

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           C     C    GKK   C+  +  ++PS + +D + LDL +  ++ L+   F+  GL  L
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L  + ++ +    F  LT L  + L++NQ+A L    F    +L  LYL GN +  
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L +G F +L  LK + L   Q+ S+   A   LT L++L+L+ N+L+ +    F     L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 204 KTLSLDGNPW-CCDCHLRSFRNWL 226
           +T++L GN + C  C       W+
Sbjct: 182 QTITLFGNQFDCSRCETLYLSQWI 205

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 107/281 (38%), Gaps = 48/281 (17%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----- 78
           CP  C C +   K +  C      A+P+ + +  Q + L+ N+ISY+   +F+S      
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTI 59
Query: 79  ------------------------------------------GLLNLQRIYLKNSGIREV 96
                                                     GL +L  ++L   G++E+
Sbjct: 60  LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 97  HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK 156
               F+ L  L  + L DN +  L  +TF     L  L+L+GN I  +    F  L  L 
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 157 TIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD 216
            + L    +  VH  A   L  L +L L  N L  L   V  P  +L+ L L+ NPW CD
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 217 CHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
           C  R    WL K +  S  + C  P  L  +    + A + 
Sbjct: 240 CRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDL 280

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 96/227 (42%), Gaps = 16/227 (7%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
           L+ L L+ NPI+ +      +L  L+ I+L   Q+  V   A   L  L  LN++GN+L 
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF--RNWLLKSKLYSHPLSCTEPGMLQTKH 248
            L ESVF    NL+TL LD NP  CDC L     R W L       P +C  P  +Q K 
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN-RQQP-TCATPEFVQGKE 367
Query: 249 WDD----VKAQEFACPPNVT--IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH 302
           + D    +    F C        K   V  + G  V   C   GDP P ILWL   + L 
Sbjct: 368 FKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427
Query: 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
           ++      +  G        ++ +      D G Y C A N  GN S
Sbjct: 428 SA------KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDS 468

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 32  WTLGKKSALCKDANFTALPSTLDSDIQVLDLNNN-KISYLTKEAFKSIGLLNLQRIYLKN 90
           W      A    A FT L     + ++ LDL++N ++  +    F  +G   L  ++L  
Sbjct: 62  WLHSNVLARIDAAAFTGL-----ALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDR 114
Query: 91  SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
            G++E+    F+ L  L  + L DN +  L  DTF     L  L+L+GN I+ +    F 
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
            L  L  + L   ++  VH  A   L  L +L L  N L  L      P   L+ L L+ 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
           NPW CDC  R    WL K +  S  + C+ P  L  +    + A + 
Sbjct: 235 NPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 32  WTLGKKSALCKDANFTALPSTLDSDIQVLDLNNN-KISYLTKEAFKSIGLLNLQRIYLKN 90
           W      A    A FT L     + ++ LDL++N ++  +    F  +G   L  ++L  
Sbjct: 61  WLHSNVLARIDAAAFTGL-----ALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDR 113
Query: 91  SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
            G++E+    F+ L  L  + L DN +  L  DTF     L  L+L+GN I+ +    F 
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
            L  L  + L   ++  VH  A   L  L +L L  N L  L      P   L+ L L+ 
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
           NPW CDC  R    WL K +  S  + C+ P  L  +    + A + 
Sbjct: 234 NPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 280

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 41/331 (12%)
Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           + +  L+L +N ++ +   AF+ +    L+ ++L+N+ I  +    F  +  L+ +DL +
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLS--KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 115 -NQIAWLHQDTFLGNDRLKVLYL----------------------NGNPITELRAGQFPK 151
             ++ ++ +  F G   LK L L                      +GN   E+R G F  
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 152 LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           L  LK + + + Q+  + ++A   L +L  LNL  N L  L   +F P   L  L L  N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Query: 212 PWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC--PPNVTIK 266
           PW CDC +  +  W L+  + ++   C     P  ++ ++  +V    F C  P  +   
Sbjct: 301 PWNCDCDIL-WLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAP 359
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
             + I E G    + C     P  ++ WLL NG VL ++S           L + +++ +
Sbjct: 360 RDLNISE-GRMAELKCRT--PPMSSVKWLLPNGTVLSHAS----RHPRISVLNDGTLNFS 412
Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
             +V   D G YTC   N+ GN++    L++
Sbjct: 413 --HVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  LPS     +  L+L +N+++ +  +AF+ +    L+ ++L+N+ I  +    F  + 
Sbjct: 79  FNGLPS-----LNTLELFDNRLTTVPTQAFEYLS--KLRELWLRNNPIESIPSYAFNRVP 131
Query: 106 ILVEVDLSD-NQIAWLHQDTFLG--------------ND--------RLKVLYLNGNPIT 142
            L  +DL +  ++ ++ +  F G               D        RL+ L L+GN + 
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
            +R G F  L  L+ + L H Q+ ++ ++A   L +LE LNL+ N L  L   +F P   
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC 259
           L+ + L+ NPW C+C +  + +W LK  + S+   C     P  L+ ++  ++    F C
Sbjct: 252 LERVHLNHNPWHCNCDV-LWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 32/204 (15%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  T    +  C+     ++P+ + ++ Q+L L++N+I+ L    F S  L+NL
Sbjct: 13  CPSQCSCSGT----TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LINL 66
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
           + +YL ++ +  +    F  LT L  +DL  NQ+  L    F     LK L++  N +TE
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L  G          IE                LT L  L L+ N+LK +    F    +L
Sbjct: 127 LPRG----------IE---------------RLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 204 KTLSLDGNPWCCDCH-LRSFRNWL 226
               L GNPW C+C  +   RNW+
Sbjct: 162 THAYLFGNPWDCECRDIMYLRNWV 185

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 57/248 (22%)
Query: 15  TTGSPDWTD--------CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNK 66
           T+G PD           CP  C C      +   C D    A+P  +  D  +LDL NN 
Sbjct: 10  TSGIPDLDSLPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNND 65
Query: 67  ISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL---------------------T 105
           IS L K+ FK  GL +L  + L N+ I ++H   F  L                     +
Sbjct: 66  ISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS 123
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI--TELRAGQFP--KLPYLKTIE-- 159
            LVE+ + DN+I  + +  F G   +  + + GNP+  +    G F   KL YL+  E  
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 160 ----------------LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
                           L H +I ++  + L+  + L  L L  N+++ +        P L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 204 KTLSLDGN 211
           + L LD N
Sbjct: 244 RELHLDNN 251

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 86/237 (36%), Gaps = 53/237 (22%)
Query: 23  DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
           DCP  C C+ T    +  C       +P  +      L LN+N++  ++ +         
Sbjct: 1   DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL------- 49
Query: 83  LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
                             F  L  LV+++L  NQ+  +  + F G   ++ L L  N I 
Sbjct: 50  ------------------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
           E+    F  L  LKT+ L   QI  V   +  HL +L SLNL                  
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL------------------ 133
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
                   NP+ C+CHL  F  WL K  L      C  P  ++     D+   EF C
Sbjct: 134 ------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKC 184

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 31/206 (15%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  T    +  C     T++P+ + +    LDL  N +  L    F    L +L
Sbjct: 1   CPSRCSCSGT----TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSL 54
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
            ++YL  + ++ +    F  LT L  ++LS NQ+                          
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ------------------------S 90
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L  G F KL  LK + L   Q+ S+       LT L+ L L  N+LK + + VF    +L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 204 KTLSLDGNPWCCDC-HLRSFRNWLLK 228
           + + L  NPW C C  +R    W+ K
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINK 176

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 38  SALC--KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE 95
           S +C  +  +FT++PS L + ++ LDL+ NKI+Y+     ++    NLQ + LK+S I  
Sbjct: 33  SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINT 90
Query: 96  VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-FPKLPY 154
           +  D F  L  L  +DLSDN ++ L    F     LK L L GNP   L     FP L  
Sbjct: 91  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 155 LKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK------------------HLSES 195
           L+T+ + + +  S + +     LT+L  L +    L+                  HLSES
Sbjct: 151 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 210
Query: 196 VFF 198
            F 
Sbjct: 211 AFL 213

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 38  SALC--KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE 95
           S +C  +  +FT++PS L + ++ LDL+ NKI+Y+     ++    NLQ + LK+S I  
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINT 64
Query: 96  VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-FPKLPY 154
           +  D F  L  L  +DLSDN ++ L    F     LK L L GNP   L     FP L  
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 155 LKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK------------------HLSES 195
           L+T+ + + +  S + +     LT+L  L +    L+                  HLSES
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 196 VFF 198
            F 
Sbjct: 185 AFL 187

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 56  DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
           +++ L L  NK+  ++  A K   L NL  + L  + ++ +    F  LT L E+ L +N
Sbjct: 64  NVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           Q+  L    F     L  LYL  N +  L  G F KL  L  ++L + Q+ S+ +     
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC 217
           LT L+ L+LN N+LK + + VF    +L  + L  NPW C C
Sbjct: 180 LTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCAC 221

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   N TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   N TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   N TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 18  CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 77
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 78  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 196
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 197 LLPFAFLHGNPWLCNCEILYFRRWL 221

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C     TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L + Q+  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C     TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L + Q+  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   N TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C     TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L + Q+  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C     TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L + Q+  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 56  DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
           +++ L L  NK+  ++  A K   L NL  + L  + ++ +    F  LT L E+ L +N
Sbjct: 64  NVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           Q+  L    F     L  L L  N +  L  G F KL  L  ++L + Q+ S+ +     
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
           LT L+ L L  N+LK + + VF    +L+ + L  NPW C C  +R    W+ K
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 136/350 (38%), Gaps = 33/350 (9%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C   +      C       +P +L S   +LDL++N +S L  E +    L NL
Sbjct: 12  CPANCLCASNILS----CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNL 66
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L ++ +  +  + F  +  L  +DLS N +  L +  F     L+VL L  N I  
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALI---HLTALESLNLNGNRLKHL--SESVFF 198
           +    F  +  L+ + L   QI     + +     L  L  L+L+ N+LK L  ++    
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 199 PTPNLKTLSLDGNPWCCDCHL-RSFRNWL---LKSKL-YSHPLSCTEPGMLQTKHWDDVK 253
           P      L L  NP  CDC L + F +W    L S + +   L C     L      D  
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDF- 245
Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSFDLLEE 311
              F C      KES      G  +T+ C        T +W+   N QVL   S   +  
Sbjct: 246 ---FNCSE---YKESAWEAHLGDTLTIRCDT-KQQGMTKVWVSPSNEQVLSQGSNGSVSV 298
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
             GD  F+K        V   D G YTCYA     N +  + L +    L
Sbjct: 299 RNGDLFFKK--------VQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   + TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
           C   + TALP  L  D  +L L+ N +   S  T   +  +  LNL R  L         
Sbjct: 17  CDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92  ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
              G  ++  +  + L +L +       +D+S N++  L      G   L+ LYL GN +
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
             L  G     P L+ + L +  +  +    L  L  L++L L  N L  + +  FF + 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
            L    L GNPW C+C +  FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  TL      C++    ++P+ + +D Q L LNNN+I+ L    F    L+NL
Sbjct: 6   CPSQCSCDQTLVN----CQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNL 59
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
           Q++Y  ++ +  +    F  LT L ++DL+DN +  + +  F     L  +YL  NP
Sbjct: 60  QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
           L+LN N IT+L  G F  L  L+ +     ++ ++       LT L  L+LN N LK + 
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 194 ESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
              F    +L  + L  NPW C+C  +   RNW+
Sbjct: 98  RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29  RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL 88
           +C    G ++  C++     +P TL +  +VL+ + N +                     
Sbjct: 6   KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLP-------------------- 45
Query: 89  KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
                  +   TF  L  L+ +DL+  QI W+H+DTF  + +L  + L GNP+  +    
Sbjct: 46  ------TIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETS 99
Query: 149 FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
                +LK + L    I ++    + +L  LESL+L  N +  ++    FPT NLK L  
Sbjct: 100 LTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDF 159
Query: 209 DGN 211
             N
Sbjct: 160 QNN 162

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
           + ++ LDL+ N +  ++      +GL  L+ +  ++S ++++     F  L  L+ +D+S
Sbjct: 373 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
                      F G   L+VL + GN   E      F +L  L  ++L  CQ+  +   A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
              L++L+ LN+  N+LK + + +F    +L+ + L  NPW C C  +     WL K+
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 75  FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134
           FK +    ++   L  S I  + +  F + T L ++ L+ N+I  +  + F G   L  L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
            L+ N +  + +  F  L  L+ ++L +  I ++   + + L  L+ L L+ N+LK + +
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 195 SVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
            +F    +L+ + L  NPW C C  +     WL K+
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 37  KSALCK--DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
           ++ +CK    +  ++PS L   ++ LDL+NN+I+Y++    +    +NLQ + L ++GI 
Sbjct: 32  RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGIN 89
Query: 95  EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLP 153
            +  D+F  L  L  +DLS N ++ L    F     L  L L GNP   L     F  L 
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 154 YLKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK 190
            L+ + + +    + + +     LT LE L ++ + L+
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 37  KSALCK--DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
           ++ +CK    +  ++PS L   ++ LDL+NN+I+Y++    +    +NLQ + L ++GI 
Sbjct: 6   RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGIN 63
Query: 95  EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLP 153
            +  D+F  L  L  +DLS N ++ L    F     L  L L GNP   L     F  L 
Sbjct: 64  TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 123
Query: 154 YLKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK 190
            L+ + + +    + + +     LT LE L ++ + L+
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 161

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 30  CKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK 89
           C      K+  C++   + +P TL +  + L+ + N +  +    F    L+NL  + L 
Sbjct: 5   CIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSR--LMNLTFLDLT 62
Query: 90  NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR---- 145
              I  +H DTF+    L  + L+ N + ++ + +  G   LK L+L    I+ L     
Sbjct: 63  RCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPV 122
Query: 146 -----------------AGQFPK-LPY--LKTIELQHCQIHSVHKDALIHL-TALE-SLN 183
                            + +FPK  P   LK ++ Q+  IH + ++ +  L  A+  SLN
Sbjct: 123 HNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLN 182
Query: 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            NGN +K +    F  T   ++L+  G P
Sbjct: 183 FNGNNVKGIELGAFDSTI-FQSLNFGGTP 210

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP V  ++S+V   A  G +VT+ C   G PEPT+ W  +G+ + N      E++E    
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE----EDDEKHIF 249
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
            + S  +T+ NV   D  EY C AEN  G     I L +
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 55/207 (26%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  T       C     T++P+ + S    L+L +NK+  L             
Sbjct: 1   CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP------------ 44
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                            F  LT L ++ LS NQI  L    F    +L +LYL+ N +  
Sbjct: 45  --------------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L  G F K                        LT L+ L L+ N+LK + + +F    +L
Sbjct: 91  LPNGVFDK------------------------LTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 204 KTLSLDGNPWCCDC-HLRSFRNWLLKS 229
           + + L  NPW C C  +     WL K+
Sbjct: 127 QKIWLHTNPWDCSCPRIDYLSRWLNKN 153

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 49/116 (42%)
Query: 96  VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL 155
           +   TF  L  L  +DL+  QI W+H+DTF    RL  L L  NP+  +          L
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107
Query: 156 KTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           K +      I S+    L +   LESL L  N +  +     FPT  LK L    N
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 72/248 (29%)
Query: 44  ANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR----- 98
           +NF  LP      +  +DL  N I+ +  + FK +    LQ + L+++ +  +H      
Sbjct: 332 SNFYGLPK-----VAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRDNALTTIHFIPSIP 384
Query: 99  DTF---KYLTILVEVDLSDN------------------------QIAWLHQDTFLG---- 127
           D F     L  L +++L+ N                        QI  L+Q+ F      
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 128 -----NDRLKVLYLNGNPI-----TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
                N  L+ L+L  N +     TEL    F  L +L+ + L H  ++S+      HLT
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504
Query: 178 ALESLNLNGNRLKHLSES---------------VFFPTPN----LKTLSLDGNPWCCDCH 218
           AL  L+LN NRL  LS +               +  P P+    L  L +  N + C+C 
Sbjct: 505 ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564
Query: 219 LRSFRNWL 226
           L +F NWL
Sbjct: 565 LSTFINWL 572

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 59/238 (24%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  T+ +    C +     LP  +  D+  L L+ N+ + + KE          
Sbjct: 4   CPTECTCLDTVVR----CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKEL--------- 50
Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                            +K+LT+   +DLS+N+I+ L   +F    +L  L L+ N    
Sbjct: 51  ---------------SNYKHLTL---IDLSNNRISTLSNQSFSNMTQLLTLILSYN---- 88
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
                               ++  +       L +L  L+L+GN +  + E  F     L
Sbjct: 89  --------------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHP--LSCTEPGMLQTKHWDDVKAQEFAC 259
             L++  NP  CDC+++   +W +KS+ Y  P    C  PG +  K      +++F C
Sbjct: 129 SHLAIGANPLYCDCNMQWLSDW-VKSE-YKEPGIARCAGPGEMADKLLLTTPSKKFTC 184

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           +VLYL  N IT+L  G F +L  L  ++L + Q+  +       LT L  L+LN N+LK 
Sbjct: 41  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
           +    F    +L  + L  NPW C C
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPWDCAC 126

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           +VLYL  N IT+L  G F +L  L  ++L + Q+  +       LT L  L+LN N+LK 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
           +    F    +L  + L  NPW C C
Sbjct: 93  IPRGAFDNLKSLTHIWLLNNPWDCAC 118

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 80  LLNLQRIYLKNSGIREVHRDTF--KYLTILVEVDLSDNQI-AWLHQDTFLGNDRLKVLYL 136
           L  LQ + L+ +G++   +     K ++ L  +D+S N + +  +  T    + + VL L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESV 196
           + N +T       P  P +K ++L + +I S+ KD + HL AL+ LN+  N+LK + + V
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGV 492
Query: 197 FFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
           F    +L+ + L  NPW C C  +R    W+ K
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           +VLYL  N IT+L  G F +L  L  ++L + Q+  +       LT L  L+LN N+LK 
Sbjct: 33  QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
           +    F    +L  + L  NPW C C
Sbjct: 93  IPRGAFDNLRSLTHIWLLNNPWDCAC 118

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 260 PPNVTI--KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP +++  K      E G  +T SC   G PEP I W  NG+        L+EE E   L
Sbjct: 96  PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYIL 147
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRG 346
              +  +T+ N+ + D G Y C A N  G
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAG 176

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           +VL+L  N IT+L  G F  L  L  + L   Q+ ++       LT L  L L+ N+LK 
Sbjct: 43  QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKLYSHPL 236
           +   VF    +L  + L  NPW C+C  +   +NW+++     +PL
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPL 148

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 70/232 (30%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---- 79
           CP  C+C      +   C D     +P  L  D  +LDL NNKI+ +    FK++     
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 80  ------------------LLNLQRIYLKNSGIRE---------------------VHRDT 100
                             L+ L+R+YL  + ++E                     V +  
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 101 FKYLTILVEVDLSDNQI--AWLHQDTFLGNDRLKV---------------------LYLN 137
           F  L  ++ V+L  N +  + +    F G  +L                       L+L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
           GN IT++ A     L  L  + L    I +V   +L +   L  L+LN N+L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 70/232 (30%)
Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---- 79
           CP  C+C      +   C D     +P  L  D  +LDL NNKI+ +    FK++     
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 80  ------------------LLNLQRIYLKNSGIRE---------------------VHRDT 100
                             L+ L+R+YL  + ++E                     V +  
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 101 FKYLTILVEVDLSDNQI--AWLHQDTFLGNDRLKV---------------------LYLN 137
           F  L  ++ V+L  N +  + +    F G  +L                       L+L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
           GN IT++ A     L  L  + L    I +V   +L +   L  L+LN N+L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 260 PPNVTI--KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP +++  K      E G  +T SC   G PEP I W  NG+        L+EE E   L
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYIL 243
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRG 346
              +  +T+ N+ + D G Y C A N  G
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAG 272

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
           E G  +T SC   G PEP I W  NG+        L+EE E   L   +  +T+ N+ + 
Sbjct: 17  ERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYILKGSNTELTVRNIINS 68
Query: 333 DAGEYTCYAENIRG 346
           D G Y C A N  G
Sbjct: 69  DGGPYVCRATNKAG 82

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 60  LDLNNNKISYLTKEAFKSIG-LLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLSDNQ 116
           LD +NN    LT   F++ G L  L+ + L+ + ++E+ +  +    +  L ++D+S N 
Sbjct: 329 LDFSNN---LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 117 IAWLHQDTFLGN----DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
           +++   D   G+      L  L ++ N +T+      P  P +K ++L   +I S+ K  
Sbjct: 386 VSY---DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ- 439
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
           ++ L AL+ LN+  N+LK + + +F    +L+ + L  NPW C C  +     WL K+
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 80  LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDT-------FL-GNDRL 131
           L NL  + L N+ I  ++ D  + L  L  +D   N +A L +         FL G   L
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
            +L L  N + E+  G F  L  LK+I L    ++ +        T+L SLNL  N +  
Sbjct: 539 HILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITS 598
Query: 192 LSESVFFP-TPNLKTLSLDGNPWCCDCHLRS-FRNWLLK-----SKLYSHPLSCTEP 241
           + + VF P   NL +L +  NP+ C C   S F NW+ +     S+L +H L C  P
Sbjct: 599 VEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYL-CNTP 654

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
           LVEVDLS N++  +    F+   RL+ LY++ N +  L     P +P LK ++L H  + 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNHLL 314
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
            V ++       LE+L L+ N +  L  S       LK L+L  N W C+     FRN
Sbjct: 315 HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRN 368

>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In Complex With Nerve Growth Factor Length = 347

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 127 GNDRLKVLYL-NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
           G + L  LY+ N   +  L       L  L+ + +    +  V  DA      L  LNL+
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLK--SKLYSHPLSCTEPGM 243
            N L+ LS        +L+ L L GNP  C C LR  + W  +    +    L C   G 
Sbjct: 89  FNALESLSWKTV-QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP 147
Query: 244 LQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN 303
           L   H  +         P + ++      + G +V + C V             G+ L  
Sbjct: 148 L--AHMPNASCGV----PTLKVQVPNASVDVGDDVLLRCQV------------EGRGLEQ 189
Query: 304 SSFDLLEEEEGDALFEK----SVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDL 356
           + + L E E+   + +     S+ +TL NVT DL+    TC+AEN  G A   + +++
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
           LVEVDLS N++  +    F+   RL+ LY++ N +  L     P +P LK ++L H  + 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNHLL 308
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
            V ++       LE+L L+ N +  L  S       LK L+L  N W C+     FRN
Sbjct: 309 HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRN 362

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEG 314
           E   PP   +K   V    G + T  C+V G     I W   N ++    ++ +      
Sbjct: 193 EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------ 246
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             L E + ++T+  VT  DAG+YTCYA N+ G  S    L + E
Sbjct: 247 -TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
           PP   +K   V    G + T  C+V G     I W   N ++    ++ +        L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM-------TLV 57
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           E + ++T+  VT  DAG+YTCYA N+ G  S    L + E
Sbjct: 58  ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
           GG+V   C VY D +P I W+     NG          L+  +   +   +  +  LFNV
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 330 TDLDAGEYTCYAENIRGNAS 349
           T+ DAGEY C   N  G A+
Sbjct: 193 TEADAGEYICKVSNYIGQAN 212

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
           GG+V   C VY D +P I W+     NG          L+  +   +   +  +  LFNV
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 330 TDLDAGEYTCYAENIRGNAS 349
           T+ DAGEY C   N  G A+
Sbjct: 193 TEADAGEYICKVSNYIGQAN 212

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
           GG+V   C VY D +P I W+     NG          L+  +   +   +  +  LFNV
Sbjct: 132 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 191
Query: 330 TDLDAGEYTCYAENIRGNAS 349
           T+ DAGEY C   N  G A+
Sbjct: 192 TEADAGEYICKVSNYIGQAN 211

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
           PP   +K   V    G + T  C+V G     I W   N ++    ++ +        L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM-------TLV 57
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
           E + ++T+  VT  DAG+YTCYA N+ G  S    L +
Sbjct: 58  ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
           + ++ LDL+ N +  ++      +GL  L+ +  ++S ++++     F  L  L+ +D+S
Sbjct: 78  TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
                      F G   L+VL + GN   E      F +L  L  ++L  CQ+  +   A
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 173 LIHLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTL 206
              L++L+ LN++ N                      L H+      E   FP+ +L  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 253
Query: 207 SLDGNPWCCDCHLRSFRNWL 226
           +L  N + C C  +SF  W+
Sbjct: 254 NLTQNDFACTCEHQSFLQWI 273

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 37/228 (16%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C++ NF  +P  L    + LDL+ N + +L   +F S                       
Sbjct: 15  CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 51
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           F  L +L   DLS  +I  +    +     L  L L GNPI  L  G F  L  L+ +  
Sbjct: 52  FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
               + S+    + HL  L+ LN+  N ++      +F    NL+ L L  N     +C 
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           D   L       L   L  +P++  +PG  +     +++ +E A   N
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 211

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
           G N+   C   G P PT+ WL NG+ L  +S + +E   GD  F K        ++  D+
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPL--ASQNRVEVLAGDLRFSK--------LSLEDS 357
Query: 335 GEYTCYAENIRGN--ASGEISLD 355
           G Y C AEN  G   AS E+++ 
Sbjct: 358 GMYQCVAENKHGTIYASAELAVQ 380

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
           +T   SM + E G +   SC   G+P PT+ WL  GQVL  S+   +   +  + FE S 
Sbjct: 18  LTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS- 75
Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                +V   D G Y+   EN  G    E +L +
Sbjct: 76  -----SVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
           +T   SM + E G +   SC   G+P PT+ WL  GQVL  S+   +   +  + FE S 
Sbjct: 12  LTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS- 69
Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                +V   D G Y+   EN  G    E +L +
Sbjct: 70  -----SVQASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
           D+ K       P  T  E M  +     A   V   C   G P+PT+ WL NG+      
Sbjct: 3   DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGK-----E 57
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           F       G  +   + SI + +V   D G YTC  EN  G+ +    LD+ E
Sbjct: 58  FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 110

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P ++ ++   V    G NVT+ C+  G+P P I W             +LE     A   
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR-----------KVLEPMPSTAEIS 161
Query: 320 KSVSI-TLFNVTDLDAGEYTCYAENIRGN 347
            S ++  +FN+   D G Y C AENIRG 
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAENIRGK 190

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
           P  T    MV+R  G ++ + C   G P P I W   G        DL  ++     F K
Sbjct: 225 PQGTASSQMVLR--GMDLLLECIASGVPTPDIAWYKKGG-------DLPSDKAKFENFNK 275
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
           ++ IT  NV++ D+GEY C A N  G+    IS+ +
Sbjct: 276 ALRIT--NVSEEDSGEYFCLASNKMGSIRHTISVRV 309

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
           D+ K       P  T  E M  +     A   V   C   G P+PT+ WL NG+      
Sbjct: 2   DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGK-----E 56
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           F       G  +   + SI + +V   D G YTC  EN  G+ +    LD+ E
Sbjct: 57  FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 109

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
           D+ K       P  T  E M  +     A   V   C   G P PT+ WL NG+      
Sbjct: 2   DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGK-----E 56
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           F       G  +   + SI + +V   D G YTC  EN  G+ +    LD+ E
Sbjct: 57  FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 109

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C + NF  +P  L    + LDL+ N + +L   +F S                       
Sbjct: 16  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 52
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           F  L +L   DLS  +I  +    +     L  L L GNPI  L  G F  L  L+ +  
Sbjct: 53  FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
               + S+    + HL  L+ LN+  N ++      +F    NL+ L L  N     +C 
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           D   L       L   L  +P++  +PG  +     +++ +E A   N
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 212

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILW 294
           P  C     L   H D V       P + TI  S      G N+++SC+   +P     W
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSW 415
Query: 295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--- 351
           L++G +          ++    LF       + N+T+ ++G YTC A N   +ASG    
Sbjct: 416 LIDGNI----------QQHTQELF-------ISNITEKNSGLYTCQANN---SASGHSRT 455
Query: 352 ------ISLDLPEINLATTLSK 367
                 +S +LP+ ++++  SK
Sbjct: 456 TVKTITVSAELPKPSISSNNSK 477

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P N+   ESM       ++   C V G P PT+ W+ NG V+  S  D  +   G  L  
Sbjct: 319 PSNLYAYESM-------DIEFECAVSGKPVPTVNWMKNGDVVIPS--DYFQIVGGSNL-- 367
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
                 +  V   D G Y C AEN  GNA     L +P+
Sbjct: 368 -----RILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--SSFDLLEEEEGD 315
           A PP +  K        GG  +  C   GDP P+I+W  NG+ +    S + +LE+  G 
Sbjct: 6   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG- 64
Query: 316 ALFEKSVSITLFNVTDLDAGE----YTCYAENIRGNA 348
                   I++  +  + AG     Y C AEN  G+A
Sbjct: 65  --------ISILRIEPVRAGRDDAPYECVAENGVGDA 93

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLSDN 115
           ++ LDL+ N +  ++      +GL  L+ +  ++S ++++     F  L  L+ +D+S  
Sbjct: 399 LKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
                    F G   L+VL + GN   E      F +L  L  ++L  CQ+  +   A  
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 175 HLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTLSL 208
            L++L+ LN++ N                      L H+      E   FP+ +L  L+L
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNL 574
Query: 209 DGNPWCCDCHLRSFRNWL 226
             N + C C  +SF  W+
Sbjct: 575 TQNDFACTCEHQSFLQWI 592

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C + NF  +P  L    + LDL+ N + +L   +F S                       
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 50
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           F  L +L   DLS  +I  +    +     L  L L GNPI  L  G F  L  L+ +  
Sbjct: 51  FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
               + S+    + HL  L+ LN+  N ++      +F    NL+ L L  N     +C 
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           D   L       L   L  +P++  +PG  +     +++ +E A   N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 210

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C + NF  +P  L    + LDL+ N + +L   +F S                       
Sbjct: 16  CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS----------------------- 52
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           F  L +L   DLS  +I  +    +     L  L L GNPI  L  G F  L  L+ +  
Sbjct: 53  FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
               + S+    + HL  L+ LN+  N ++      +F    NL+ L L  N     +C 
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           D   L       L   L  +P++  +PG  +     +++ +E A   N
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 212

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
           + ++ LDL+ N +  ++      +GL  L+ +  ++S ++++     F  L  L+ +D+S
Sbjct: 373 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
                      F G   L+VL + GN   E      F +L  L  ++L  CQ+  +   A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 173 LIHLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTL 206
              L++L+ LN++ N                      L H+      E   FP+ +L  L
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 548
Query: 207 SLDGNPWCCDCHLRSFRNWL 226
           +L  N + C C  +SF  W+
Sbjct: 549 NLTQNDFACTCEHQSFLQWI 568

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--SSFDLLEEEEGD 315
           A PP +  K        GG  +  C   GDP P+I+W  NG+ +    S + +LE+  G 
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG- 62
Query: 316 ALFEKSVSITLFNVTDLDAGE----YTCYAENIRGNA 348
                   I++  +  + AG     Y C AEN  G+A
Sbjct: 63  --------ISILRIEPVRAGRDDAPYECVAENGVGDA 91

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 260 PPN-VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP  + + E+M I E G    M   V G P P + W LNG+ + +     +       + 
Sbjct: 5   PPRFIQVPENMSIDE-GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM------IVS 57
Query: 319 EKSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISLDL 356
           EK +   +F V    DAG Y C A+N  G A+  + LD+
Sbjct: 58  EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C + NF  +P  L    + LDL+ N + +L   +F S                       
Sbjct: 15  CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS----------------------- 51
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           F  L +L   DLS  +I  +    +     L  L L GNPI  L  G F  L  L+ +  
Sbjct: 52  FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
               + S+    + HL  L+ LN+  N ++      +F    NL+ L L  N     +C 
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           D   L       L   L  +P++  +PG  +     +++ +E A   N
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 211

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 260 PPNVTIKESMV---IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           PP  T K S++   +RE G +V MS  V G+P+P + WL N Q +        EE EG  
Sbjct: 5   PP--TFKVSLMDQSVRE-GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                  + +      DAG YTC A N  G    E  L++
Sbjct: 62  -----CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALF 318
           P ++T++E  + R       M C V G P P + W L+G+ V  +S+  +L  E G    
Sbjct: 16  PGDLTVQEGKLCR-------MDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH-- 66
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               S+ +  VT  DAG YTC A N  G  S  + L
Sbjct: 67  ----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	610
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-50
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-70
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-40
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-29
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-17
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-17
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-16
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	9e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-15
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-15
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-13
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-14
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-14
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-14
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-14
2ens_A	96	Advanced glycosylation END product-specific recept	6e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-14
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-11
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-12
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	9e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-05
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	7e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	9e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	9e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	8e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	9e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-06
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	1e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-06
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	6e-06
2wy3_A	319	MHC class I polypeptide-related sequence B; immune	1e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	8e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	2e-04
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	5e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	8e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  276 bits (707), Expect = 7e-88
 Identities = 78/341 (22%), Positives = 122/341 (35%), Gaps = 29/341 (8%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C          C       +P +L S   +LDL++N +S L  E   +  L NL
Sbjct: 12  CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNL 66

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L ++ +  +  + F  +  L  +DLS N +  L +  F     L+VL L  N I  
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDA---LIHLTALESLNLNGNRLKHLSESVFFPT 200
           +    F  +  L+ + L   QI     +       L  L  L+L+ N+LK L  +     
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 201 PNLK--TLSLDGNPWCCDCHLRSFRNWLLKSKL-----YSHPLSCTEPGMLQTKHWDDVK 253
           P      L L  NP  CDC L    +     +L     +   L C     L      D  
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD-- 244

Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
              F C      KES      G  +T+ C         +    + + + +          
Sbjct: 245 --FFNCSEY---KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG-------S 292

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             ++  ++  +    V   D G YTCYA     N +  + L
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  238 bits (610), Expect = 2e-72
 Identities = 79/316 (25%), Positives = 127/316 (40%), Gaps = 26/316 (8%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYL 104
           F  L       ++ L L NN I  +   AF    + +L R+ L     +  +    F+ L
Sbjct: 143 FEYLSK-----LRELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
             L  ++L    I  +          L+ L ++GN   E+R G F  L  LK + + + Q
Sbjct: 196 FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
           +  + ++A   L +L  LNL  N L  L   +F P   L  L L  NPW CDC +     
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAW 313

Query: 225 WLLKSKLYS--HPLSCTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMS 281
           WL +    +      C  P  ++ ++  +V    F C  P +      +    G    + 
Sbjct: 314 WLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELK 373

Query: 282 CYVYGDPEPTILWLL-NGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338
           C     P  ++ WLL NG VL ++S    +    +G        ++   +V   D G YT
Sbjct: 374 CRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG--------TLNFSHVLLSDTGVYT 423

Query: 339 CYAENIRGNASGEISL 354
           C   N+ GN++    L
Sbjct: 424 CMVTNVAGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  179 bits (457), Expect = 2e-50
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 7/213 (3%)

Query: 1   MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
            L   V +L A +    S    +CP  C C         +C     + +P  + S+ + L
Sbjct: 23  YLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYL 80

Query: 61  DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
           +L  N I  +  + F+   L +L+ + L  + IR++    F  L  L  ++L DN +  +
Sbjct: 81  NLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 121 HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTAL 179
               F    +L+ L+L  NPI  + +  F ++P L  ++L    ++  + + A   L  L
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           + LNL    +K +      P   L+ L + GN 
Sbjct: 199 KYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  236 bits (605), Expect = 2e-71
 Identities = 85/341 (24%), Positives = 124/341 (36%), Gaps = 47/341 (13%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F+ L S     ++ L L    ++ +  EA     L  L  + L++  I  +   +FK L 
Sbjct: 148 FSGLNS-----LEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 106 I------------------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
                                    L  + ++   +  +          L+ L L+ NPI
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
           + +      +L  L+ I+L   Q+  V   A   L  L  LN++GN+L  L ESVF    
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVK----AQEF 257
           NL+TL LD NP  CDC L        +        +C  P  +Q K + D         F
Sbjct: 321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYF 380

Query: 258 AC--PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLE-EEE 313
            C        K   V  + G  V   C   GDP P ILWL     ++   S   L    +
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           G        ++ +      D G Y C A N  GN S    L
Sbjct: 441 G--------TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  163 bits (414), Expect = 3e-44
 Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 28/227 (12%)

Query: 22  TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLD-------------------- 61
           T CP  C C      ++ LC    F A+P  + ++ ++LD                    
Sbjct: 1   TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58

Query: 62  ----LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
               LN N +S +   AF    L NL+ + L+++ ++ +    F  L+ L ++D+S+N+I
Sbjct: 59  EELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             L    F     LK L +  N +  +    F  L  L+ + L+ C + S+  +AL HL 
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
            L  L L    +  + +  F     LK L +   P+           
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  138 bits (349), Expect = 2e-35
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           FT L +     +  LD++ NKI  L    F+   L NL+ + + ++ +  +    F  L 
Sbjct: 100 FTGLSN-----LTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
            L ++ L    +  +  +       L VL L    I  +R   F +L  LK +E+ H   
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
                   ++   L SL++    L  +          L+ L+L  NP
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  232 bits (593), Expect = 5e-70
 Identities = 71/316 (22%), Positives = 132/316 (41%), Gaps = 25/316 (7%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRDTFKYL 104
           F  L       ++ L L NN I  +   AF    + +L+R+ L     +  +    F+ L
Sbjct: 132 FVYLSK-----LKELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
           + L  ++L+   +  +         +L  L L+GN ++ +R G F  L +L+ + +   Q
Sbjct: 185 SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
           I  + ++A  +L +L  +NL  N L  L   +F P  +L+ + L  NPW C+C +     
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSW 302

Query: 225 WLLKSKLYS--HPLSCTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMS 281
           W+      +      C  P  L+ ++  ++    F C  P +    + +    G    + 
Sbjct: 303 WIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELK 362

Query: 282 CYVYGDPEPTILWLL-NGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338
           C        ++ W+  NG V+ + ++   +    +G        ++   NVT  D G YT
Sbjct: 363 CRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--------TLNFTNVTVQDTGMYT 413

Query: 339 CYAENIRGNASGEISL 354
           C   N  GN +   +L
Sbjct: 414 CMVSNSVGNTTASATL 429

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  173 bits (441), Expect = 3e-48
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 7/213 (3%)

Query: 1   MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
           +L V ++ +        +     CP  C C         +C   N   +P  + ++ ++L
Sbjct: 12  LLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLL 69

Query: 61  DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
           +L+ N+I  +   +FK   L +L+ + L  + IR +    F  L  L  ++L DN++  +
Sbjct: 70  NLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 121 HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTAL 179
               F+   +LK L+L  NPI  + +  F ++P L+ ++L    ++  + + A   L+ L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
             LNL    L+ +      P   L  L L GN 
Sbjct: 188 RYLNLAMCNLREIPN--LTPLIKLDELDLSGNH 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  188 bits (479), Expect = 2e-55
 Identities = 68/285 (23%), Positives = 101/285 (35%), Gaps = 52/285 (18%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDI-------------------------- 57
           CP  C C     K +  C      A+P  + +                            
Sbjct: 2   CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 58  ----------------------QVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
                                 + LDL +N ++  +    F   GL  L  ++L   G++
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQ 118

Query: 95  EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
           E+    F+ L  L  + L DN +  L  DTF     L  L+L+GN I+ +    F  L  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214
           L  + L   ++  VH  A   L  L +L L  N L  L      P   L+ L L+ NPW 
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 215 CDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
           CDC  R    WL K +  S  + C+ P  L  +    + A +   
Sbjct: 239 CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  175 bits (446), Expect = 2e-51
 Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 29/238 (12%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP+ CRC+ T    +  C +     +P  +      L LNNN+ + L             
Sbjct: 5   CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG--------- 51

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                            FK L  L +++ S+N+I  + +  F G   +  + L  N +  
Sbjct: 52  ----------------IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           ++   F  L  LKT+ L+  +I  V  D+ I L+++  L+L  N++  ++   F    +L
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261
            TL+L  NP+ C+C+L     WL K ++ +    C +P  L+     DV  Q+F C  
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  168 bits (426), Expect = 4e-47
 Identities = 51/235 (21%), Positives = 80/235 (34%), Gaps = 15/235 (6%)

Query: 123 DTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181
               G + L  LY+     +  L       L  L+ + +    +  V  DA      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEP 241
           LNL+ N L+ LS        +L+ L L GNP  C C LR  + W  +           + 
Sbjct: 85  LNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWEEE----GLGGVPEQK 139

Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301
                +             P + ++      + G +V + C V G       W+L     
Sbjct: 140 LQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 199

Query: 302 HNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
             +                   +TL NVT DL+    TC+AEN  G A   + ++
Sbjct: 200 SATVMKSGGLPSL--------GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  136 bits (343), Expect = 1e-35
 Identities = 68/363 (18%), Positives = 108/363 (29%), Gaps = 54/363 (14%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLD--SDIQVLDL-NNNKISYLTKEAFKSIGL 80
           CPD C      G     C           L    ++  L + N   + +L     +  GL
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55

Query: 81  LNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
             L+ + +  SG+R V  D F +   L  ++LS N +  L   T      L+ L L+GNP
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNP 114

Query: 141 ------ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
                 +  L+  +   L  +   +LQ      +                  N    + +
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174

Query: 195 SVFF-------PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTK 247
            V                       W            L +S            G+    
Sbjct: 175 DVLLRCQVEGRGLEQAG--------W--------ILTELEQSATVMKSGGLPSLGLTLAN 218

Query: 248 HWDDVKAQEFAC---------------PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI 292
              D+  +   C                 +      +       +  +   V G P P++
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSL 278

Query: 293 LWLLNGQVLHNSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351
            WL NG VL+ +SF   E  E       +   + L   T ++ G YT  A N  G AS  
Sbjct: 279 RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 338

Query: 352 ISL 354
           I  
Sbjct: 339 IMA 341

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  163 bits (414), Expect = 7e-47
 Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 30/238 (12%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C          C+    T +P+ L   I  + L  N I  +   AF       L
Sbjct: 5   CPAACTCSNN----IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKL 58

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
           +RI                        DLS+NQI+ L  D F G   L  L L GN ITE
Sbjct: 59  RRI------------------------DLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L    F  L  L+ + L   +I+ +  DA   L  L  L+L  N+L+ +++  F P   +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261
           +T+ L  NP+ CDCHL+   ++L  + + +    CT P  L  K    +K+++F C  
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  160 bits (406), Expect = 1e-44
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 13/208 (6%)

Query: 44  ANFTALPSTLDSDIQVLDLNNNKISYLTKE-AFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
           +NF  L       ++ LD  ++ +  +++   F    L NL  + + ++  R      F 
Sbjct: 95  SNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFN 147

Query: 103 YLTILVEVDLSDNQ-IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
            L+ L  + ++ N        D F     L  L L+   + +L    F  L  L+ + + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGNPWCCDCHLR 220
           H    S+       L +L+ L+ + N +    +      P +L  L+L  N + C C  +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267

Query: 221 SFRNWLLKSK---LYSHPLSCTEPGMLQ 245
           SF  W+   +   +    + C  P   Q
Sbjct: 268 SFLQWIKDQRQLLVEVERMECATPSDKQ 295

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  147 bits (372), Expect = 7e-40
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C  T       C     T++P+ + S    L+L +NK+  L    F    L  L
Sbjct: 1   CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54

Query: 84  QRIYLKNSGIREVH--RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
            ++ L ++G+        +    T L  +DLS N +  +    FLG ++L+ L    + +
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 113

Query: 142 TEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR-LKHLSESVFFP 199
            ++     F  L  L  +++ H             L++LE L + GN   ++    +F  
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 200 TPNLKTLSLDGN 211
             NL  L L   
Sbjct: 174 LRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
           E+  +   +  +             L L  N +  L  G F KL  L  + L    +   
Sbjct: 11  EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 169 H--KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
                +    T+L+ L+L+ N +  +S + F     L+ L    + 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  153 bits (389), Expect = 9e-42
 Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 31/239 (12%)

Query: 1   MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
           M   + ++    +  + S + +    +  C              +  ++PS L   ++ L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLSCD---RNGICKGSSGSLNSIPSGLTEAVKSL 57

Query: 61  DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
           DL+NN+I+Y++    +    +NLQ + L ++GI  +  D+F  L  L  +DLS N ++ L
Sbjct: 58  DLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 121 HQDTFLGNDRLKVLYLNGNPI--------------------------TELRAGQFPKLPY 154
               F     L  L L GNP                           T+++   F  L +
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
           L+ +E+    + S    +L  +  +  L L+  +   L E     T +++ L L     
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 7e-21
 Identities = 30/102 (29%), Positives = 49/102 (48%)

Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
           +K L L+ N IT +      +   L+ + L    I+++ +D+   L +LE L+L+ N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
           +LS S F P  +L  L+L GNP+        F +      L 
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (390), Expect = 4e-40
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 4/188 (2%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
               C  K     K+  C++     +P TL +  + L+ + N +  +    F    L+NL
Sbjct: 4   SDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINL 59

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L    I  +H DTF+    L  + L+ N + ++ +    G   LK L+     I+ 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           +          L+++ L    I S+          L+ L+   N + +LS+         
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 204 KTLSLDGN 211
             LSL+ N
Sbjct: 180 TNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 1e-38
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 13/208 (6%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F   P      +++LDL   ++     ++     L  L+ + L +S +       F  L 
Sbjct: 396 FKECPQ-----LELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 106 ILVEVDLSDNQIAWLHQ---DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
            L  ++L  N     +    ++     RL++L L+   ++ +    F  L  +  ++L H
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
            ++ S   +AL HL  +  LNL  N +  +  S+       +T++L  NP  C C    F
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

Query: 223 RNWLLKSK---LYSHPLSCTEPGMLQTK 247
             W  ++      +    C  P +L+  
Sbjct: 569 LEWYKENMQKLEDTEDTLCENPPLLRGV 596

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 6e-28
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 4/169 (2%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  L ++    + +    +     ++   F+ +  ++++ I L+      +  +TF   +
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH-CQ 164
            L E+DL+   ++ L     +G   LK L L+ N    L        P L  + ++   +
Sbjct: 279 GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 165 IHSVHKDALIHLTALESLNLNGNRLK--HLSESVFFPTPNLKTLSLDGN 211
              +    L +L  L  L+L+ + ++             +L++L+L  N
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (274), Expect = 3e-25
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
                      ++VLD  NN I YL+KE   S+       + L  + I  +    F    
Sbjct: 149 GFPTEK-----LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 106 I-------------------------LVEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNG 138
                                     L      D     +    F  L    ++ + L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 139 NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF 198
           +    + +  F     L+ ++L    +  +    L+ L+ L+ L L+ N+ ++L +    
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 199 PTPNLKTLSLDGN 211
             P+L  LS+ GN
Sbjct: 323 NFPSLTHLSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (259), Expect = 2e-23
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 31/201 (15%)

Query: 38  SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIR 94
                 + F  L       ++VL+L+++ +   +++ F   GL  LQ + L+        
Sbjct: 413 KVKDAQSPFQNLHL-----LKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGN 465

Query: 95  EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
               ++ + L  L  + LS   ++ + Q  F     +  + L+ N +T         L  
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGN--------------------RLKHLSE 194
           +  + L    I  +    L  L+   ++NL  N                    +L+   +
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584

Query: 195 SVFFPTPNLKTLSLDGNPWCC 215
           ++    P L+ + L      C
Sbjct: 585 TLCENPPLLRGVRLSDVTLSC 605

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 132 KVLYLNGNPITELRAGQFPK--LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
           K        + E+     P       + +E     + ++       L  L  L+L   ++
Sbjct: 15  KTYNCENLGLNEI-----PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 190 KHLSESVFFPTPNLKTLSLDGNP 212
             + E  F     L TL L  NP
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANP 92

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  146 bits (369), Expect = 1e-39
 Identities = 57/262 (21%), Positives = 91/262 (34%), Gaps = 26/262 (9%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----- 78
           C  +             C   N TALP  L  D  +L L+ N +   +            
Sbjct: 4   CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 79  ---------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQD 123
                           L  L  + L ++ ++ +     + L  L  +D+S N++  L   
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 124 TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183
              G   L+ LYL GN +  L  G     P L+ + L +  +  +    L  L  L++L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGM 243
           L  N L  + +  FF +  L    L GNPW C+C +  FR WL  +    +         
Sbjct: 179 LQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237

Query: 244 LQTKHWDDVKAQEFACPPNVTI 265
             T +   V+       P    
Sbjct: 238 AMTSNVASVQCDNSDKFPVYKY 259

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  145 bits (368), Expect = 2e-38
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 13/188 (6%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + LD ++N I+ +       + +L LQ   L ++               LVEVDLS N++
Sbjct: 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNEL 260

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             +    F+   RL+ LY++ N +  L       +P LK ++L H  +  V ++      
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFD 318

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS 237
            LE+L L+ N +  L  S       LK L+L  N W C+     FRN   +  +      
Sbjct: 319 RLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQH 374

Query: 238 CTEPGMLQ 245
           C     L+
Sbjct: 375 CKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  143 bits (363), Expect = 7e-38
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           +        ++ +++   N+ +  L            ++ + L +  I E+    F Y  
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAH 93

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
            + ++ +  N I +L    F     L VL L  N ++ L  G F   P L T+ + +  +
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
             +  D     T+L++L L+ NRL H+  S+    P+L   ++  N
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  142 bits (361), Expect = 1e-37
 Identities = 37/174 (21%), Positives = 75/174 (43%)

Query: 38  SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH 97
           +   +   +  + S L  D    D++ +  +      F+ I L N + +  KNS +R++ 
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 98  RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
                    +  ++L+D QI  +    F     ++ LY+  N I  L    F  +P L  
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + L+   + S+ +    +   L +L+++ N L+ + +  F  T +L+ L L  N
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (375), Expect = 4e-38
 Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 12/208 (5%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103
           NF  L       +Q LD  ++ +  +T+  AF    L  L  + +  +  +      F  
Sbjct: 394 NFMGLEE-----LQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 104 LTILVEVDLSDNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
           LT L  + ++ N        + F     L  L L+   + ++  G F  L  L+ + + H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
             +  +       L +L +L+ + NR++     +     +L   +L  N   C C  + F
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566

Query: 223 RNWLLKSKLYSHPLS---CTEPGMLQTK 247
             W+ + K +   +    C  P  + T 
Sbjct: 567 LQWVKEQKQFLVNVEQMTCATPVEMNTS 594

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 2e-31
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 29/189 (15%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
             + C         +  C D   + +P  + S  + +DL+ N +  L   +F       L
Sbjct: 3   SLNPCIEVVPN--ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSEL 58

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
           Q +                        DLS  +I  +    + G   L  L L GNPI  
Sbjct: 59  QWL------------------------DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PN 202
              G F  L  L+ +     ++ S+    +  L  L+ LN+  N +       +F    N
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 203 LKTLSLDGN 211
           L  + L  N
Sbjct: 155 LVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 3e-26
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 9/171 (5%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
                P+     ++ L L  NK S      FK + L +L  + L  + +      ++  L
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 105 TI--LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQ 161
               L  +DLS N    +    F+G + L+ L    + +  +     F  L  L  +++ 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF-PTPNLKTLSLDGN 211
           +           + LT+L +L + GN  K  + S  F  T NL  L L   
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 10/169 (5%)

Query: 46  FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
              L       + + +  +   +        + +  + +    L  +         F  L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
             +  + L+   I +L           + L +    + +        LP+LK++ L   +
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNK 339

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVF--FPTPNLKTLSLDGN 211
                    + L +L  L+L+ N L       +    T +L+ L L  N
Sbjct: 340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 7e-20
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTF 101
             +   L          LD++ N I ++  +AF+    + L  + L  N     + +   
Sbjct: 170 VNDLQFLRE-NPQVNLSLDMSLNPIDFIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCL 225

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYLNGNPITELRAGQFPKLP 153
           + L  L    L   +                      +    L           +F  L 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 154 YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            +  + L    I  +  + +      +SL++   +LK          P LK+L+L  N
Sbjct: 286 NVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMN 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (373), Expect = 4e-38
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV-HRD 99
           C   +     S     ++ LDL+ N +  ++       GL  L+ +  ++S ++++    
Sbjct: 364 CCSQSDFGTTS-----LKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFS 415

Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTI 158
            F  L  L+ +D+S           F G   L+VL + GN   E      F +L  L  +
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC- 217
           +L  CQ+  +   A   L++L+ LN+  N+LK + + +F    +L+ + L  NPW C C 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 218 HLRSFRNWLLKS 229
            +     WL K+
Sbjct: 536 RIDYLSRWLNKN 547

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (324), Expect = 1e-31
 Identities = 49/226 (21%), Positives = 78/226 (34%), Gaps = 34/226 (15%)

Query: 26  DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQR 85
           + C         +  C + NF  +P  L    + LDL+ N + +L   +F       LQ 
Sbjct: 1   EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQV 56

Query: 86  IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
           +                        DLS  +I  +    +     L  L L GNPI  L 
Sbjct: 57  L------------------------DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 146 AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLK 204
            G F  L  L+ +      + S+    + HL  L+ LN+  N ++      +F    NL+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 205 TLSLDGNPWCCDC-----HLRSFRNWLLKSKLYSHPLSCTEPGMLQ 245
            L L  N            L       L   L  +P++  +PG  +
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (282), Expect = 3e-26
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 9/173 (5%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR--EVHRDT 100
           +  F   P+     ++ L   +NK        F  + L +L+ + L  +G+        +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIE 159
               T L  +DLS N +  +    FLG ++L+ L    + + ++     F  L  L  ++
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
           + H             L++LE L + GN  + +    +F    NL  L L   
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 46  FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKY 103
              L       + + +  N   +    K A + +  L ++   L       +   D F  
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
           LT +    L    I  +   ++      + L L      +    +   L  L        
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRL---TFTSN 335

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLS--ESVFFPTPNLKTLSLDGN 211
           +  +    + + L +LE L+L+ N L          F T +LK L L  N
Sbjct: 336 KGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 14/173 (8%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----GLLNLQRIYLKNSGIREVHRDT 100
           N      +    +  L +   +++YL       I     L N+    L +  I  V   +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           +        ++L + +         L    LK L    N      +     LP L+ ++L
Sbjct: 302 Y--NFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDL 354

Query: 161 QHCQIH--SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
               +        +    T+L+ L+L+ N +  +S S F     L+ L    +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 36/209 (17%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDTFKYL 104
              L   +      LDL+ N ++++   AFK    + L ++ L+N+     V +   + L
Sbjct: 169 LRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 105 TILVEVDL------SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR---AGQFPKLPYL 155
             L    L      ++  +    +    G   L +       +          F  L  +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 156 KTIELQHCQIHSVHKDAL-------------------IHLTALESLNLNGNRLKHLSESV 196
            +  L    I  V   +                    + L +L+ L    N+  +     
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342

Query: 197 FFPTPNLKTLSLDGNP-WCCDCHLRSFRN 224
               P+L+ L L  N      C  +S   
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  144 bits (366), Expect = 8e-38
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 1/176 (0%)

Query: 54  DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
           +S        +          FK +    ++   L  S I  + +  F + T L ++ L+
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
            N+I  +  + F G   L  L L+ N +  + +  F  L  L+ ++L +  I ++   + 
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
           + L  L+ L L+ N+LK + + +F    +L+ + L  NPW C C  +     WL K
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (334), Expect = 2e-33
 Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 17/247 (6%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
               C         +A+C +     +P  L + +  +DL+ N I+ L + +F    L +L
Sbjct: 4   GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56

Query: 84  QRIYLKNSGI-REVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
           Q + ++       +  +TF+ L+ L+ + L  NQ   L    F G   L+VL L    + 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 143 E--LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVF-- 197
              L    F  L  L+ + L+   I  +   +   ++     L+L  N++K + E     
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 198 FPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
           F   +   L L          +  +     K        +      L    + +  A+ F
Sbjct: 177 FQGKHFTLLRLSSI---TLQDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRF 232

Query: 258 ACPPNVT 264
                 T
Sbjct: 233 FDAIAGT 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.0 bits (221), Expect = 6e-19
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 31/191 (16%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  L S     +++L L +N I  +   +F    +     + L  + ++ +  +      
Sbjct: 125 FKPLTS-----LEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQ 178

Query: 106 I--LVEVDLSDNQIAWLHQ--------DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL 155
                 + LS   +  +++             N  +  L L+GN   E  A +F      
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 156 KTIE-------------LQHCQIHSVHKDALIHL--TALESLNLNGNRLKHLSESVFFPT 200
             I+               H             L  + +++ +L+ +++  L +SVF   
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298

Query: 201 PNLKTLSLDGN 211
            +L+ L+L  N
Sbjct: 299 TDLEQLTLAQN 309

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  139 bits (352), Expect = 2e-37
 Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 25/228 (10%)

Query: 22  TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI--- 78
                 C C     K S  C     TA+PS + +D + LDL +NK+S L  +AF  +   
Sbjct: 6   KKDGGVCSC--NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKL 63

Query: 79  -------------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
                               L NL+ +++ ++ ++ +    F  L  L E+ L  NQ+  
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179
           L    F    +L  L L  N +  L  G F KL  LK + L + Q+  V + A   LT L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
           ++L L+ N+LK + E  F     LK L L  NPW C C+ +     WL
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  145 bits (366), Expect = 4e-37
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           +        ++ +++   N+ +  L            ++ + L +  I E+    F Y  
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAH 99

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
            + ++ +  N I +L    F     L VL L  N ++ L  G F   P L T+ + +  +
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159

Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
             +  D     T+L++L L+ NRL H+  S+    P+L   ++  N
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  144 bits (364), Expect = 8e-37
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + LD ++N I+ +            L  + L+++ + +           LVEVDLS N++
Sbjct: 214 EELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 266

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             +    F+   RL+ LY++ N +  L       +P LK ++L H  +  V ++      
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFD 324

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS 237
            LE+L L+ N +  L  S       LK L+L  N W C+     FRN   +  +      
Sbjct: 325 RLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQH 380

Query: 238 CTEP 241
           C   
Sbjct: 381 CKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  142 bits (359), Expect = 3e-36
 Identities = 37/174 (21%), Positives = 75/174 (43%)

Query: 38  SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH 97
           +   +   +  + S L  D    D++ +  +      F+ I L N + +  KNS +R++ 
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 98  RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
                    +  ++L+D QI  +    F     ++ LY+  N I  L    F  +P L  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + L+   + S+ +    +   L +L+++ N L+ + +  F  T +L+ L L  N
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 9e-29
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
            VL L  N +S L +  F       L  + + N+ +  +  DTF+  T L  + LS N++
Sbjct: 126 TVLVLERNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 118 AWLHQDTFLG----------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
             +                          ++ L  + N I  +R     +L  LK   LQ
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQ 240

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           H  +       L++   L  ++L+ N L+ +    F     L+ L +  N
Sbjct: 241 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  136 bits (345), Expect = 6e-37
 Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 14/213 (6%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
               C C     ++       +   +PS L    Q L L    +  +   AF    L N+
Sbjct: 4   SSPPCECH---QEEDFRVTCKDIQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNI 57

Query: 84  QRIYL-KNSGIREVHRDTFKYLTILVEVDLSDNQ-IAWLHQDTFLGNDRLKVLYLNGNPI 141
            RIY+  +  ++++   +F  L+ +  +++ + + + ++  D       LK L +    +
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 142 TELRAGQF-PKLPYLKTIELQH-CQIHSVHKDALIHLTA-LESLNLNGNRLKHLSESVFF 198
                            +E+     + S+  +A   L     +L L  N    +    F 
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177

Query: 199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL 231
            T  L  + L+ N +       +F    + S  
Sbjct: 178 GT-KLDAVYLNKNKYLTVIDKDAFGG--VYSGP 207

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 97.4 bits (243), Expect = 5e-23
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 14/169 (8%)

Query: 46  FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KY 103
           F  L       +  +++ N   ++Y+  +A K   L  L+ + + N+G++     T    
Sbjct: 76  FYNLSK-----VTHIEIRNTRNLTYIDPDALK--ELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 104 LTILVEVDLSDN-QIAWLHQDTFLG-NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
             I   ++++DN  +  +  + F G  +    L L  N  T ++   F     L  + L 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLN 187

Query: 162 HCQ-IHSVHKDALIHL-TALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
             + +  + KDA   + +    L+++   +  L          L   + 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  138 bits (348), Expect = 3e-36
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 14/229 (6%)

Query: 24  CPD-TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
           C    C C      +  LC+++  T +PS L  +   L     K+  + K AF   G  +
Sbjct: 2   CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGD 55

Query: 83  LQRIYLKNSGIRE-VHRDTFKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNP 140
           L++I +  + + E +  D F  L  L E+ +   N + +++ + F     L+ L ++   
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 141 ITELRAGQFPKLPYLKTIELQH-CQIHSVHKDALIHLTA-LESLNLNGNRLKHLSESVFF 198
           I  L             +++Q    IH++ +++ + L+     L LN N ++ +  S F 
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 199 PTPNLKTLSLDGNPWCCDCHLRSFRN--WLLKSKLYSHPLSCTEPGMLQ 245
            T   +    D N          F      +   +    +       L+
Sbjct: 176 GTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  116 bits (292), Expect = 1e-28
 Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 14/224 (6%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK-NSGIREVHRDTFKYL 104
           F  LP+     +Q L ++N  I +L       I  L    + ++ N  I  + R++F  L
Sbjct: 100 FQNLPN-----LQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 105 TI-LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
           +   V + L+ N I  +H   F G    ++   + N + EL    F        +++   
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFR 223
           +IHS+    L +L  L + +    +              L   SL   P  C       R
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLT-YPSHCCAFANWRR 267

Query: 224 NWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE 267
                  + +  +   E   +           E          +
Sbjct: 268 QISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFD 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  136 bits (344), Expect = 5e-36
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 10/181 (5%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + L   NN IS ++    +       + IYL N+ I  +        + +  +DL  N+I
Sbjct: 102 ETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
             ++      + D L+ L L  N I +++         LKT++L   ++  +        
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSA 213

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPL 236
             +  ++L  N+L  + ++    + NL+   L GN + C      F        +    +
Sbjct: 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 237 S 237
            
Sbjct: 273 K 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (284), Expect = 9e-28
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           +  ++  + ++ +        +     N++ + L  + + ++        T L  ++LS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N +             L+ L LN N + EL        P ++T+   +  I  V      
Sbjct: 68  NVLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR-- 118

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
                +++ L  N++  L +        ++ L L  N
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 1e-26
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 23/174 (13%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
            +++ LDL+ N +S ++           L+ + L ++ + E      + L+ L  +DL++
Sbjct: 34  WNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNN 89

Query: 115 NQIAWLHQDTFL------GN----------DRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
           N +  L     +       N             K +YL  N IT LR         ++ +
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 159 ELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +L+  +I +V+   L      LE LNL  N +  +   V F    LKTL L  N
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 80  LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN 139
               +   + +S +++      +    + E+DLS N ++ +         +L++L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 140 PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
            + E        L  L+T++L +  +       L+   ++E+L+   N +  +S S    
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRG-- 119

Query: 200 TPNLKTLSLDGN 211
               K + L  N
Sbjct: 120 -QGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 98  RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
            +  +         ++D+ +             +K L L+GNP++++ A        L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + L    ++      L  L+ L +L+LN N ++ L        P+++TL    N
Sbjct: 63  LNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN 109

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  142 bits (359), Expect = 7e-36
 Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 22/231 (9%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  +PS     +Q L L    +  +         L NL  + L N+ I  ++ D  + L 
Sbjct: 450 FALVPS-----LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 106 ILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYLNGNPITELRAGQFPKLPYLKT 157
            L  +DL  N +A L +    G           L +L L  N   E+    F  L  LK 
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNPWCCD 216
           I+L    ++++      +  +L+SLNL  N +  + + VF P   NL  L +  NP+ C 
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 217 C-HLRSFRNWLLKSKL----YSHPLSCTEPGMLQTK---HWDDVKAQEFAC 259
           C  +  F NW+ ++       S    C  P          +D    ++ A 
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH 675

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (358), Expect = 1e-35
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 29  RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL 88
           +C  +   + A C     T +P  L ++I VL+L +N++  L    F       L  + +
Sbjct: 1   KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDV 56

Query: 89  KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
             + I ++  +  + L +L  ++L  N+++ L   TF     L  L+L  N I +++   
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 149 FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF--FPTPNLKTL 206
           F K   L T++L H  + S      + L  L+ L L+ N+++ L       F   +LK L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 207 SLDGNP 212
            L  N 
Sbjct: 177 ELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  120 bits (302), Expect = 1e-28
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 10/184 (5%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
              L +     +Q L L+NNKI  L  E        +L+++ L ++ I+E     F  + 
Sbjct: 141 QVQLEN-----LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 106 ILVEVDLSDNQIAWLHQDTF---LGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIEL 160
            L  + L++ Q+     +     L N  ++ L L+ + ++      F  L +  L  ++L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLR 220
            +  ++ V  D+   L  LE   L  N ++HL         N++ L+L  +       L 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 221 SFRN 224
           S   
Sbjct: 316 SLPK 319

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (297), Expect = 5e-28
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS--GIREVHRDTFKYLTI--LVEV 110
             ++ L++ +N I  +    F   GL+NL+ + L NS   +R +  +TF  L    L  +
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT-ELRAGQFPKLPYLKTIELQHCQIHSVH 169
           +L+ N+I+ +  D F     L+VL L  N I  EL   ++  L  +  I L + +   + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 170 KDALIHLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
           +++   + +L+ L L    LK++    S F P  NL  L L  N
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (293), Expect = 2e-27
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           + I+ L L+N+++S  +   F  +   NL  + L  + +  V  D+F +L  L    L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGN---------PITELRAGQFPKLPYLKTIELQHCQI 165
           N I  L   +  G   ++ L L  +          + ++    F  L  L+ + ++   I
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 166 HSVHKDALIHLTALESLNLNGNRLK--HLSESVF--FPTPNLKTLSLDGN 211
             +  +    L  L+ L+L+ +      L+   F       L  L+L  N
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 2e-22
 Identities = 33/186 (17%), Positives = 77/186 (41%), Gaps = 20/186 (10%)

Query: 45  NFTALPSTL-----DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD 99
             +   +T       +++ +LDL+ N ++ +  ++F    L  L+  +L+ + I+ +   
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSH 290

Query: 100 TFKYLTILVEVDLSDN---------QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
           +   L  +  ++L  +          +  +   +F     L+ L +  N I  +++  F 
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 151 KLPYLKTIELQH--CQIHSVHKDALIHL--TALESLNLNGNRLKHLSESVFFPTPNLKTL 206
            L  LK + L +    + ++  +  + L  + L  LNL  N++  +    F    +L+ L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 207 SLDGNP 212
            L  N 
Sbjct: 411 DLGLNE 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 2e-35
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 13/209 (6%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
            +NF  L       ++ LD  ++ +  ++    F    L NL  + + ++  R      F
Sbjct: 389 SSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIF 441

Query: 102 KYLTILVEVDLSDNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
             L+ L  + ++ N        D F     L  L L+   + +L    F  L  L+ + +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGNPWCCDCHL 219
            H    S+       L +L+ L+ + N +    +      P +L  L+L  N + C C  
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 220 RSFRNWLLKSK---LYSHPLSCTEPGMLQ 245
           +SF  W+   +   +    + C  P   Q
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (289), Expect = 5e-27
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 29/187 (15%)

Query: 26  DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQR 85
           + C         +  C + NF  +P  L    + LDL+ N + +L   +F       LQ 
Sbjct: 1   EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQV 56

Query: 86  IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
           +                        DLS  +I  +    +     L  L L GNPI  L 
Sbjct: 57  L------------------------DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 146 AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLK 204
            G F  L  L+ +      + S+    + HL  L+ LN+  N ++      +F    NL+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 205 TLSLDGN 211
            L L  N
Sbjct: 153 HLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 9/171 (5%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGI--REVHRDTFK 102
            F   P+     ++ L   +NK        F  + L +L+ + L  +G+  +     +  
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQ 161
             T L  +DLS N +  +  + FLG ++L+ L    + + ++     F  L  L  +++ 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
           H             L++LE L + GN  + +    +F    NL  L L   
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 29/193 (15%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----GLLNLQRIYLKNSGIREVHRDT 100
           N      +    +  L +   +++YL       I     L N+    L +  I  V   +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDR-------------------LKVLYLNGNPI 141
           +        ++L + +             R                   L+ L L+ N +
Sbjct: 302 Y--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 142 T--ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFF 198
           +     +        LK ++L    + ++  +  + L  LE L+   + LK +SE SVF 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 199 PTPNLKTLSLDGN 211
              NL  L +   
Sbjct: 419 SLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 46  FTALPSTLDSDIQVLDLNN-NKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKY 103
              L       + + +  N   +    K A + +  L ++   L       +   D F  
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
           LT +    L    I  +   ++      + L L      +    +   L  L        
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRL-----TFT 333

Query: 164 QIHSVHKDALIHLTALESLNLNGNRL--KHLSESVFFPTPNLKTLSLDGN 211
                +  + + L +LE L+L+ N L  K       F T +LK L L  N
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 16/186 (8%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKYL 104
              L   +      LDL+ N ++++   AFK    + L ++ L  N     V +   + L
Sbjct: 169 LRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 105 TILVEVDLSDNQ------IAWLHQDTFLGNDRLKVLYLNGNPITELR---AGQFPKLPYL 155
             L    L   +      +    +    G   L +       +          F  L  +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 156 KTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215
            +  L    I  V      +    + L L   +              L   S  G     
Sbjct: 285 SSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 216 DCHLRS 221
           +  L S
Sbjct: 343 EVDLPS 348

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  134 bits (339), Expect = 4e-35
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH--RDTFK 102
               LP  +   +Q L ++ N+I+ + K  F   GL  +  + L  + ++        F+
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
            +  L  + ++D  I  + Q        L  L+L+GN IT++ A     L  L  + L  
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
             I +V   +L +   L  L+LN N+L  +          ++ + L  N 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (329), Expect = 1e-33
 Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 35/196 (17%)

Query: 18  SPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS 77
            P    CP  C+C      +   C D     +P  L  D  +LDL NNKI+         
Sbjct: 19  EPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT--------- 65

Query: 78  IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137
                            E+    FK L  L  + L +N+I+ +    F    +L+ LYL+
Sbjct: 66  -----------------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK--HLSES 195
            N + EL       L  L+   +   +I  V K     L  +  + L  N LK   +   
Sbjct: 109 KNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 196 VFFPTPNLKTLSLDGN 211
            F     L  + +   
Sbjct: 166 AFQGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (317), Expect = 4e-32
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 19/179 (10%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKI--SYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
            + F  L       + V++L  N +  S +   AF+  G+  L  I + ++ I  + +  
Sbjct: 138 KSVFNGLNQ-----MIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGL 190

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
              LT L    L  N+I  +   +  G + L  L L+ N I+ +  G     P+L+ + L
Sbjct: 191 PPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------PNLKTLSLDGNPW 213
            + ++  V    L     ++ + L+ N +  +  + F P        +   +SL  NP 
Sbjct: 248 NNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 6e-30
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
           F  +       +  + + +  I+ + +         +L  ++L  + I +V   + K L 
Sbjct: 167 FQGMKK-----LSYIRIADTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLN 216

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
            L ++ LS N I+ +   +      L+ L+LN N + ++  G      Y++ + L +  I
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNI 275

Query: 166 HSVHKDALI------HLTALESLNLNGNRLKH--LSESVFFPTPNLKTLSLDGN 211
            ++  +            +   ++L  N +++  +  S F        + L   
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (277), Expect = 8e-27
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
           N T +P  L   +  L L+ NKI+ +   + K  GL NL ++ L  + I  V   +    
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP------KLPYLKTI 158
             L E+ L++N++  +       +  ++V+YL+ N I+ + +  F       K      +
Sbjct: 240 PHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 159 ELQHCQI--HSVHKDALIHLTALESLNLNGNR 188
            L    +    +       +    ++ L   +
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 1e-34
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + L   NN IS ++    +       + IYL N+ I  +        + +  +DL  N+I
Sbjct: 102 ETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
             ++      + D L+ L L  N I +++         LKT++L   ++  +        
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSA 213

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
             +  ++L  N+L  + ++    + NL+   L GN + C      F        +  
Sbjct: 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 7e-27
 Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           +  ++  + ++ +        +     N++ + L  + + ++        T L  ++LS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N +             L+ L LN N + EL        P ++T+   +  I  V      
Sbjct: 68  NVLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR-- 118

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
                +++ L  N++  L +        ++ L L  N 
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 3e-25
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
            +++ LDL+ N +S ++           L+ + L ++ + E      + L+ L  +DL++
Sbjct: 34  WNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNN 89

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N +  L          ++ L+   N I+ +   +      +    L + +I  +      
Sbjct: 90  NYVQELLVGP-----SIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEG 141

Query: 175 HLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGN 211
             + ++ L+L  N +  ++ +    +   L+ L+L  N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 80  LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN 139
               +   + +S +++      +    + E+DLS N ++ +         +L++L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 140 PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
            + E        L  L+T++L +  +       L+   ++E+L+   N +  +S S    
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRG-- 119

Query: 200 TPNLKTLSLDGN 211
               K + L  N
Sbjct: 120 -QGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 98  RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
            +  +         ++D+ +             +K L L+GNP++++ A        L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + L    ++      L  L+ L +L+LN N ++ L        P+++TL    N
Sbjct: 63  LNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 11/175 (6%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
               +   L    +++  DL  N     T   F S     +Q   +    ++++     +
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQ--TVAKQTVKKLTGQNEE 281

Query: 103 YLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
             T+                 +  +   L      +L   G+    L   +       + 
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQRE 340

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           I+    Q  +V     +   A  +L      L     +       L         
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 14/157 (8%), Positives = 38/157 (24%), Gaps = 5/157 (3%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
              L +    +  +L    ++   L  E          + I       R V         
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQ 360

Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
             + ++     +     +    +  L           EL      +   L+ +     + 
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRY 419

Query: 166 -HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
                +   +   A+   ++  ++   L+E       
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  132 bits (333), Expect = 2e-34
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE--VHRDTFK 102
           +   +P  L S +  L +++N+I  + K  F   GL N+  I +  + +         F 
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
            L  L  + +S+ ++  + +D     + L  L+L+ N I  +      +   L  + L H
Sbjct: 171 GLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            QI  +   +L  L  L  L+L+ N+L  +  +       L+ + L  N 
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  124 bits (313), Expect = 2e-31
 Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 34/191 (17%)

Query: 22  TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
             CP  C C      +   C D    A+P  +  D  +LDL NN IS             
Sbjct: 25  AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS------------- 67

Query: 82  NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
                        E+ +D FK L  L  + L +N+I+ +H+  F    +L+ LY++ N +
Sbjct: 68  -------------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS-ESVFFPT 200
            E+       L  L+   +   +I  V K     L  +  + + GN L++   E   F  
Sbjct: 115 VEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 201 PNLKTLSLDGN 211
             L  L +   
Sbjct: 172 LKLNYLRISEA 182

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (309), Expect = 4e-31
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKI--SYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
              F+ L +     +  +++  N +  S     AF     L L  + +  + +  + +D 
Sbjct: 140 KGVFSGLRN-----MNCIEMGGNPLENSGFEPGAFDG---LKLNYLRISEAKLTGIPKDL 191

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
            + L  L    L  N+I  +  +  L   +L  L L  N I  +  G    LP L+ + L
Sbjct: 192 PETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------PNLKTLSLDGNPW- 213
            + ++  V    L  L  L+ + L+ N +  +  + F P            +SL  NP  
Sbjct: 249 DNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 214 CCDCHLRSFRN 224
             +    +FR 
Sbjct: 308 YWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (274), Expect = 2e-26
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 23/171 (13%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
           +A  T +P  L   +  L L++NKI  +  E         L R+ L ++ IR +   +  
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLS 238

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
           +L  L E+ L +N+++ +          L+V+YL+ N IT++    F  + +        
Sbjct: 239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------- 289

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKH--LSESVFFPTPNLKTLSLDGN 211
                      +       ++L  N + +  +  + F    +   +     
Sbjct: 290 ----------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIG----LLNLQRIYLKNSGI--REV 96
             + +P+ L     +QV+ L+ N I+ +    F  +G          I L N+ +   EV
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 97  HRDTFKYLTILVEVDLSDNQ 116
              TF+ +T  + +   + +
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (343), Expect = 3e-34
 Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 30/219 (13%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHR--DTFK 102
              L S     ++ LDL+ N +     +     G   +LQ + L  + +R + +  +   
Sbjct: 330 SQHLKS-----LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL---------- 152
            L  L  +D+S N    +  D+    ++++ L L+   I  ++      L          
Sbjct: 385 TLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 153 -------PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKT 205
                  P L+ + +   ++ ++   +L     L  + ++ N+LK + + +F    +L+ 
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 206 LSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPG 242
           + L  NPW C C    + +  L         S  C+  G
Sbjct: 502 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (304), Expect = 3e-29
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 37/190 (19%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           C  +  C           +  +FT++PS L + ++ LDL+ NKI+Y+     ++      
Sbjct: 4   CDASGVCD---------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA------ 48

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                                  L  + L  ++I  +  D F     L+ L L+ N ++ 
Sbjct: 49  --------------------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNL-NGNRLKHLSESVFFPTP 201
           L +  F  L  LK + L      ++   +L  +LT L++L + N      +    F    
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 202 NLKTLSLDGN 211
           +L  L +   
Sbjct: 149 SLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (268), Expect = 1e-24
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 9/178 (5%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD-TFKYLTILVEVDLSD-N 115
           + LDL++N +S L+   F    L +L+ + L  +  + +     F  LT L  + + +  
Sbjct: 77  EHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
             + + +  F G   L  L +    +   ++     +  +  + L   +   + +     
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN-----PWCCDCHLRSFRNWLLK 228
           L+++  L L    L     S          +                 L     ++L+
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 88  LKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
            ++     +       +  L   DLS N+I ++          L+VL L  + I  +   
Sbjct: 12  GRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTL 206
            F  L  L+ ++L    + S+       L++L+ LNL GN  + L  +  FP   NL+TL
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 207 SLDGNPWCCDCHLRSFRN 224
            +       +     F  
Sbjct: 129 RIGNVETFSEIRRIDFAG 146

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.5 bits (230), Expect = 7e-20
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
            D        +          +K L L+ N IT +  G       L+ + L+  +I+++ 
Sbjct: 10  CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            DA   L +LE L+L+ N L  LS S F P  +LK L+L GNP
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 11/170 (6%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
            F   P  +D     +     + S LT E+F    LL L R  L+ S +       F   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE--LLKLLRYILELSEV------EFDDC 261

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
           T+    D + ++   + +   +    ++ L++    +    +  +  L  +K I +++ +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHL---SESVFFPTPNLKTLSLDGN 211
           +  V      HL +LE L+L+ N +      + +     P+L+TL L  N
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 15/173 (8%), Positives = 53/173 (30%), Gaps = 20/173 (11%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           I  L L+ ++ ++L +       L +++ + L+++ +            +   +     +
Sbjct: 174 IHHLTLHLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 117 IA------------------WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
            +                   L +  F       +   N +    +      +   ++ +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            +    +          L  ++ + +  +++  +  S      +L+ L L  N
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  137 bits (347), Expect = 4e-34
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 20/233 (8%)

Query: 27  TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRI 86
           +C        + A  +  N T +P  L +  + L L+ N I  +T  +F    L  LQ +
Sbjct: 1   SCSFD----GRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFP--FLEQLQLL 53

Query: 87  YLK-NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE-- 143
            L        + ++ F+ L  L  +DL  ++I +LH D F G   L  L L    +++  
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSESVFFP--T 200
           L+ G F  L  L  ++L   QI S++   +   L +L+S++ + N++  + E    P   
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 201 PNLKTLSLDGN------PWCCDCHLRSFRNWLLKS-KLYSHPLSCTEPGMLQT 246
             L   SL  N             +  FRN +L+   +  +  +    G    
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 2e-31
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 5/175 (2%)

Query: 52  TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVD 111
            L   I       + I    +  F  +   +++ + L +  +  ++   F+ L  L  ++
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
           L+ N+I  +  + F G D L+VL L+ N + EL +  F  LP +  I+LQ   I  +   
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
               L  L++L+L  N L  +        P++  + L GN       +    N +
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLI 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (318), Expect = 2e-30
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 17/231 (7%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD-TFKY 103
               LP  ++    ++ L+ N++  L    F    + +LQ + L  +       D T   
Sbjct: 392 KLVTLPK-INLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 104 LTILVEVDLSDNQIAW-----LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
              L ++ L +N +       L  D F G   L+VLYLN N +  L  G F  L  L+ +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH 218
            L   ++  +  + L     LE L+++ N+L   +  VF    +L  L +  N + C+C 
Sbjct: 510 SLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564

Query: 219 LRSFRNWLLKSKL----YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI 265
           L +F NWL  + +        + C  P          +  +       +  
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (295), Expect = 1e-27
 Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 19/188 (10%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           S ++ LDL++  +  L    F+   L +L+ + L  + I ++  + F  L  L  ++LS 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DAL 173
           N +  L+   F G  ++  + L  N I  ++   F  L  L+T++L+   + ++H   ++
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 174 IHLT--------------ALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNPWCCDCH 218
             +                   ++L+ NRL++L    F    P+L+ L L+ N +   C 
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCS 442

Query: 219 LRSFRNWL 226
                +  
Sbjct: 443 GDQTPSEN 450

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (281), Expect = 6e-26
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%)

Query: 56  DIQVLDLNNNKISYLTKEAF----KSIGLLNLQRIYLKNSGIREVHRDTF---------- 101
            +    L  N +       +         + L+ + +  +G        F          
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 102 --KYLTILVEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
                  ++      + I    Q+TF  L    ++ L L+   +  L +  F  L  LK 
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + L + +I+ +  +A   L  L+ LNL+ N L  L  S F+  P +  + L  N
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  128 bits (323), Expect = 1e-33
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           C     C    GKK   C+  +  ++PS + +D + LDL +  ++ L+   F+  GL  L
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L  + ++ +    F  LT L  + L++NQ+A L    F    +L  LYL GN +  
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L +G F +L  LK + L   Q+ S+   A   LT L++L+L+ N+L+ +    F     L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181

Query: 204 KTLSLDGNPWCCDC-HLRSFRNWL 226
           +T++L GN + C    +     W+
Sbjct: 182 QTITLFGNQFDCSRCEILYLSQWI 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  127 bits (321), Expect = 4e-33
 Identities = 49/258 (18%), Positives = 88/258 (34%), Gaps = 57/258 (22%)

Query: 26  DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLN---------------------- 63
           + C     +   +  C + NF  +P  L    + LDL+                      
Sbjct: 1   EPCVE--VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 64  --NNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH 121
               +I  +   A++   L +L  + L  + I+ +    F  L+ L ++   +  +A L 
Sbjct: 59  LSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 122 QDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE 180
                    LK L +  N I        F  L  L+ ++L   +I S++   L  L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 181 ---------------------------SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
                                       L L+ N+LK + + +F    +L+ + L  NPW
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

Query: 214 CCDC-HLRSFRNWLLKSK 230
            C C  +     WL K+ 
Sbjct: 237 DCSCPRIDYLSRWLNKNS 254

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  124 bits (312), Expect = 3e-30
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT--FKYLTILVEVDL 112
           S    LD +NN ++    E      L  L+ + L+ + ++E+ +       +  L ++D+
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 113 SDNQI-AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
           S N +     +        L  L ++ N +T+      P    +K ++L   +I S+ K 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQ 439

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF-RNWLLKSK 230
            +  L AL+ LN+  N+LK + + +F    +L+ + L  NPW C C    +   WL K+ 
Sbjct: 440 VV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 30/190 (15%)

Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
                   +P  L     +L+++ N IS L      S                       
Sbjct: 7   RSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILS----------------------- 43

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
              L+ L  + +S N+I +L    F  N  L+ L L+ N + ++          LK ++L
Sbjct: 44  ---LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDL 97

Query: 161 QHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHL 219
                 ++       +++ L+ L L+   L+  S          K L + G  +      
Sbjct: 98  SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

Query: 220 RSFRNWLLKS 229
              +++  +S
Sbjct: 158 EGLQDFNTES 167

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 3/170 (1%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAF-KSIGLLNLQRIYLKNSGIREVHRDTFKY 103
                P   +  +  ++   N    + +  +  ++   ++  + L+          +   
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
           L  L    +  +   +     +     + +     +    +      K+     ++  + 
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
            +     +   HLT LE+L L  N+LK LS+   +     +L+ L +  N
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
            D  F  LP  +    +VLDL++NKI  + K+  K   L  LQ + + ++ ++ V    F
Sbjct: 412 TDTIFRCLPPRI----KVLDLHSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIF 464

Query: 102 KYLTILVEVDLSDN 115
             LT L ++ L  N
Sbjct: 465 DRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 8/171 (4%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
               +      +++ LDL+ N    L         +  L+ + L  + + +       +L
Sbjct: 80  KLVKISCHPTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 105 TIL-VEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
            I  V + L +        +       + L +++        +       +  L+   ++
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 162 ----HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
                 +            T  +  NL  N ++    S       +   ++
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  104 bits (261), Expect = 5e-26
 Identities = 54/243 (22%), Positives = 86/243 (35%), Gaps = 54/243 (22%)

Query: 23  DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
           DCP  C C+      +  C       +P  +      L LN+N++  ++ +         
Sbjct: 1   DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-------- 48

Query: 83  LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
                             F  L  LV+++L  NQ+  +  + F G   ++ L L  N I 
Sbjct: 49  -----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
           E+    F                          L  L++LNL  N++  +    F    +
Sbjct: 92  EISNKMFLG------------------------LHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP-P 261
           L +L+L  NP+ C+CHL  F  WL K  L      C  P  ++     D+   EF C   
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 262 NVT 264
           N  
Sbjct: 188 NSE 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  107 bits (268), Expect = 1e-24
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKY 103
              +     S    L+   N  +    +   +  L  LQ + L+ +G++   +     K 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 104 LTILVEVDLSDNQIAWLHQDT-FLGNDRLKVLYLNGNPITELRAGQFPKLPY-LKTIELQ 161
           ++ L  +D+S N +     D      + + VL L+ N +T      F  LP  +K ++L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLH 458

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLR 220
           + +I S+ KD   HL AL+ LN+  N+LK + + VF    +L+ + L  NPW C C  +R
Sbjct: 459 NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517

Query: 221 SFRNWLLK 228
               W+ K
Sbjct: 518 YLSEWINK 525

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 9e-16
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)

Query: 28  CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIY 87
              +    +      + N T +P  L    + L L+ N IS L                 
Sbjct: 28  FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISF---------- 74

Query: 88  LKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
                           L+ L  + LS N+I  L    FL N  L+ L ++ N +  +   
Sbjct: 75  ----------------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--- 115

Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTL 206
               +  L+ ++L       +       +LT L  L L+  + + L         +L   
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA---HLHLS 172

Query: 207 SLDGNPWCCDCHLRSFRNWLLKSKLYSH 234
            +  +            +  + +    H
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLH 200

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 2/170 (1%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS-IGLLNLQRIYLKNSGIREVHRDTFKY 103
             T  P+ L+  +Q ++        L +  +   +  LN+  + +     RE    +   
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
           L  L+   + +    +  +  +     + +  L+ +    +     P       +     
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
                       L  L++L L  N LK+    V   T N+ +L       
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSL 412

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 21/203 (10%), Positives = 54/203 (26%), Gaps = 42/203 (20%)

Query: 46  FTALPSTLDSDIQVLDLNNNKIS----------------------YLTKEAFKSIGLLNL 83
           F  L       +  L L+  K                        ++     +S+ + N 
Sbjct: 142 FGNLTK-----LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLG-------NDRLKVLYL 136
             ++L               +  L  + LS+ ++   +    +           L  + L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 137 NGNPITE---LRAGQFPKLPYLKTIELQHCQIHSV-----HKDALIHLTALESLNLNGNR 188
                T    ++  QF     ++ + + +  I           +   L +L   ++    
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 189 LKHLSESVFFPTPNLKTLSLDGN 211
                E+++     +    L  +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSIS 339

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 1e-23
 Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 45  NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           N    P++        + +LD  +NK+ +L  EAF     + L  + L  + I E+  D 
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFG--TNVKLTDLKLDYNQIEEIPEDF 614

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPY----- 154
             +   +  +  S N++ ++       +   +  +  + N I          +       
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-------NLKTLS 207
             T+ L + +I     +     + + ++ L+ N +  + E+   P          L T+ 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 208 LDGN 211
           L  N
Sbjct: 735 LRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 6e-21
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSI-----------------GLLNLQR 85
             T +   +   + +Q++   N+  +Y                           L +L  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 86  IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ---------DTFLGNDRLKVLYL 136
           + L N        D    L  L  ++++ N+     Q         D      ++++ Y+
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 137 NGNPITEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
             N + E   +    K+  L  ++  H ++  +  +A      L  L L+ N+++ + E 
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPED 613

Query: 196 VFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
               T  ++ L    N       L+   N      +Y 
Sbjct: 614 FCAFTDQVEGLGFSHN------KLKYIPNIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 44/214 (20%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN-------SGIREVHR 98
             ++      +   + L+ N+I     E F +     +  I L N           +   
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKD 721

Query: 99  DTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRA----------- 146
             +K   +L  +DL  N++  L  D        L  + ++ N  +               
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 147 --------------GQFP----KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR 188
                          Q+P      P L  +++    I  V +        L  L++  N 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNP 838

Query: 189 LKHLSESVFFP--TPNLKTLSLDGNPWCCDCHLR 220
              +  +   P     +  L  D       C   
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 45  NFTALPSTLDSDIQVLDL------NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR 98
           ++  +    D  + + DL       N ++  + K++  S+    +  +  + + I +   
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--- 442

Query: 99  DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
              + LT L  +  +++   + +      +          N            L  L  +
Sbjct: 443 -AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS-----NLKDLTDV 496

Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT---------PNLKTLSLD 209
           EL +C   +   D L  L  L+SLN+  NR    ++     T         P ++   + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 210 GN 211
            N
Sbjct: 557 YN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 18/215 (8%)

Query: 9   LAACLGTTGSPDWTDCPDTC-----RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLN 63
           L A        +W     T         W   K+  +  D     L +  +  +  L L 
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLA 331

Query: 64  NNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI-AWLHQ 122
                    +A     L  L+ +           R            +   ++I     +
Sbjct: 332 GFGAKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 123 DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK------DALIHL 176
                + RL +  L  + I      +   +     I L+  QI ++         A+  L
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           T L+ +    +   + + +V +   N        N
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKIS---YLTKEAFKSIG-LLNLQRIYLKNSGIREVHR 98
            F++ P+     S ++   + + + +    + ++    I    +L ++ + ++ IR+V  
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 99  DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP 153
                L IL   D++DN    +   +        +  L  +   ++R      + 
Sbjct: 824 KLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 50/239 (20%), Positives = 82/239 (34%), Gaps = 59/239 (24%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C          C +     LP  +  D+  L L+ N+ + + KE          
Sbjct: 4   CPTECTC----LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKE---------- 49

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                                  L  +DLS+N+I+ L   +F    +L  L L+ N +  
Sbjct: 50  -----------------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           +    F  L                         +L  L+L+GN +  + E  F     L
Sbjct: 93  IPPRTFDGL------------------------KSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPGMLQTKHWDDVKAQEFACP 260
             L++  NP  CDC+++   +W+     Y  P    C  PG +  K      +++F C 
Sbjct: 129 SHLAIGANPLYCDCNMQWLSDWVKSE--YKEPGIARCAGPGEMADKLLLTTPSKKFTCA 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 1e-21
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 14/156 (8%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L LN N+I  +         L +L       + I ++       +T L  + + +N+I
Sbjct: 180 YSLSLNYNQIEDI--SPLA--SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKI 233

Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
             L   + L N  +L  L +  N I+++ A     L  LK + +   QI  +    L +L
Sbjct: 234 TDL---SPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI--SVLNNL 286

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           + L SL LN N+L +    V     NL TL L  N 
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.1 bits (235), Expect = 4e-21
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
                  N+I+ +         +  L  + + N+ I ++       L+ L  +++  NQI
Sbjct: 202 HYFTAYVNQITDI--TPVA--NMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQI 255

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
           + +  +      +LK+L +  N I+++       L  L ++ L + Q+ +   + +  LT
Sbjct: 256 SDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            L +L L+ N +  +          + +       
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 4e-19
 Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           ++++ L+LN N+I+ +         L+ L  +Y+  + I ++     + LT L E+ L++
Sbjct: 66  TNLEYLNLNGNQITDI--SPLS--NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE 119

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           + I+ +     L    +  L L  N      +     +  L  + +   ++  V    + 
Sbjct: 120 DNISDISPLANLTK--MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV--TPIA 174

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +LT L SL+LN N+++ +S        +L   +   N
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 3e-18
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
           I  L +   K++ +     + I  L NL+ + L  + I ++       L  L  + +  N
Sbjct: 46  ITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTN 98

Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           +I  +          L+ LYLN + I+++       L  + ++ L      S     L +
Sbjct: 99  KITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSN 153

Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +T L  L +  +++K ++        +L +LSL+ N
Sbjct: 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L      I+ +  +A     L    R  L+ + + +V   T + L  + ++ ++  ++
Sbjct: 3   ATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
           A +    +L N  L+ L LNGN IT++       L  L  + +   +I  +   AL +LT
Sbjct: 57  ASIQGIEYLTN--LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLT 110

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            L  L LN + +  +S         + +L+L  N
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.3 bits (212), Expect = 4e-18
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L + NNKI+ L         L  L  + +  + I ++  +  K LT L  +++  NQ
Sbjct: 223 LNSLKIGNNKITDL--SPLA--NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ +         +L  L+LN N +          L  L T+ L    I  +    L  L
Sbjct: 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASL 332

Query: 177 TALESLNLNGNRLK 190
           + ++S +     +K
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 1e-17
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 40  LCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD 99
           +  DA+                L    ++ +  +      L ++ ++ +    +  +   
Sbjct: 15  IFPDADLAEG--------IRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASI--Q 60

Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
             +YLT L  ++L+ NQI  +         +L  LY+  N IT++ A     L  L+ + 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELY 116

Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           L    I  +    L +LT + SLNL  N               L  L++  +
Sbjct: 117 LNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           ++L++ +N+IS +         L  L  ++L N+ +     +    LT L  + LS N I
Sbjct: 268 KMLNVGSNQISDI--SVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITE 143
             +         ++         I +
Sbjct: 324 TDI--RPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
              L     PI ++       L       LQ   +  V       L ++  L + G ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57

Query: 191 HLSESVFFPTPNLKTLSLDGN 211
            +    +    NL+ L+L+GN
Sbjct: 58  SIQGIEYL--TNLEYLNLNGN 76

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           S +  L LNNN++     E     GL NL  ++L  + I ++       L+ +   D ++
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDI--RPLASLSKMDSADFAN 342

Query: 115 NQI 117
             I
Sbjct: 343 QVI 345

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 56  DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
           +++ L L  NK+  +   A K   L NL  + L  + ++ +    F  LT L E+ L +N
Sbjct: 64  NVRYLALGGNKLHDI--SALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           Q+  L    F     L  L L  N +  L  G F KL  L  ++L + Q+ S+ +     
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179

Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLK 228
           LT L+ L L  N+LK + + VF    +L+ + L  NPW C C  +R    W+ K
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 16/179 (8%)

Query: 37  KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV 96
           ++           P    ++    +L    ++           L ++ +I   NS I+ V
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDA--VTQ--NELNSIDQIIANNSDIKSV 56

Query: 97  HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRL---KVLYLNGNPITELRAGQFPKL 152
                +YL  +  + L  N++        +     L     L L GN +  L  G F KL
Sbjct: 57  --QGIQYLPNVRYLALGGNKL------HDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108

Query: 153 PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
             LK + L   Q+ S+       LT L  LNL  N+L+ L + VF    NL  L L  N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 34/178 (19%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           S +Q  + +N+ I  L     +     NL+ ++L ++ I ++     K LT L E+ ++ 
Sbjct: 41  SGVQNFNGDNSNIQSL--AGMQF--FTNLKELHLSHNQISDL--SPLKDLTKLEELSVNR 94

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N++  L     + +  L  L+L+ N + +  +     L  L+ + +++ ++ S+    L 
Sbjct: 95  NRLKNL---NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLG 147

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
            L+ LE L+L+GN + +           +  + L G   C +  ++      + + + 
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK-CVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 17/157 (10%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
               +L    ++ L  +      L  +Q     NS I+ +     ++ T L E+ LS NQ
Sbjct: 21  AVKQNLGKQSVTDLVSQK----ELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQ 74

Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
           I+ L   + L +  +L+ L +N N +  L       L     + L + ++     D+LIH
Sbjct: 75  ISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRDT--DSLIH 126

Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           L  LE L++  N+LK +          L+ L L GN 
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
             L   V+ +L    +      +      ++    + + I  L          LK + L 
Sbjct: 16  PGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           H QI  +    L  LT LE L++N NRLK+L+     P+  L  L LD N
Sbjct: 72  HNQISDL--SPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNN 116

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 31/206 (15%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C       +  C     T++P+ + +    LDL  N +  L    F        
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE------ 50

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                               LT L ++ L  N++  L    F     L  L L+ N +  
Sbjct: 51  --------------------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L  G F KL  LK + L   Q+ S+       LT L+ L L  N+LK + + VF    +L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 204 KTLSLDGNPWCCDCH-LRSFRNWLLK 228
           + + L  NPW C C  +R    W+ K
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINK 176

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           ++    +L    ++    +      L ++ +I   NS I+ V     +YL  + ++ L+ 
Sbjct: 24  AETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N++  +     L N  L  L+L+ N + +L +     L  LK++ L+H  I  +  + L+
Sbjct: 78  NKLTDIKPLANLKN--LGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLV 131

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           HL  LESL L  N++  +  +V      L TLSL+ N
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 15/176 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L LN NK++ +  +      L NL  ++L  + ++++   + K L  L  + L  N 
Sbjct: 70  VTKLFLNGNKLTDI--KPLA--NLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNG 123

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ +  +  +   +L+ LYL  N IT++      +L  L T+ L+  QI  +    L  L
Sbjct: 124 ISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGL 177

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
           T L++L L+ N +  L         NL  L L     C +  +    N ++ + + 
Sbjct: 178 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L L+ NK+  L   + K   L  L+ + L+++GI ++  +   +L  L  + L +N+I
Sbjct: 93  GWLFLDENKVKDL--SSLK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 146

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             +         +L  L L  N I+++       L  L+ + L    I  +   AL  L 
Sbjct: 147 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLK 200

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLS-LDGNP 212
            L+ L L      +   +         T+   DG+ 
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           ++ L L NNKI+ +         L  L  + L+++ I ++       LT L  + LS N 
Sbjct: 136 LESLYLGNNKITDI--TVLSR--LTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH 189

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ L      G   L VL L               L    T++     +  V  + +   
Sbjct: 190 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDD 245

Query: 177 TALESLNLNGNRLKHLSE 194
              E  N+  +  +  +E
Sbjct: 246 GDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 86  IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITEL 144
                + I+++   +       ++ +L    +            + +  +  N + I  +
Sbjct: 7   TITVPTPIKQI--FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSV 61

Query: 145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLK 204
           +      LP +  + L   ++  +    L +L  L  L L+ N++K L  S       LK
Sbjct: 62  QG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115

Query: 205 TLSLDGN 211
           +LSL+ N
Sbjct: 116 SLSLEHN 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 22/169 (13%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
           D                +    + ++    +A     L  +  +    +G+  +  +  +
Sbjct: 15  DPALANA--------IKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVTTI--EGVQ 60

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
           YL  L+ ++L DNQI  L         ++  L L+GNP+  + A     L  +KT++L  
Sbjct: 61  YLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTS 116

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            QI  V    L  L+ L+ L L+ N++ ++S        NL+ LS+   
Sbjct: 117 TQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           I  L      ++ +  E  +   L NL  + LK++ I ++     K LT + E++LS N 
Sbjct: 43  ITTLSAFGTGVTTI--EGVQ--YLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP 96

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           +  +     L +  +K L L    IT++       L  L+ + L   QI ++    L  L
Sbjct: 97  LKNVSAIAGLQS--IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGL 150

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           T L+ L++   ++  L+         L TL  D N
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L+L +N+I+ L     K   L  +  + L  + ++ V       L  +  +DL+  Q
Sbjct: 65  LIGLELKDNQITDL--APLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 118

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I         G   L+VLYL+ N IT +       L  L+ + + + Q+  +    L +L
Sbjct: 119 I--TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANL 172

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           + L +L  + N++  +S       PNL  + L  N 
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 14/155 (9%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L+L+ N +  +   A    GL +++ + L ++ I +V       L+ L  + L  NQI
Sbjct: 88  TELELSGNPLKNV--SAIA--GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 141

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             +      G   L+ L +    +++L       L  L T++    +I  +    L  L 
Sbjct: 142 TNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLP 195

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            L  ++L  N++  +S      T NL  ++L    
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           I+ LDL + +I+ +T  A    GL NLQ +YL  + I  +       LT L  + + + Q
Sbjct: 109 IKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ 162

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           ++ L         +L  L  + N I+++       LP L  + L++ QI  V    L + 
Sbjct: 163 VSDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANT 216

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           + L  + L    + +          NL   ++   P
Sbjct: 217 SNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           S++QVL L+ N+I+ +        GL NLQ + + N+ + ++       L+ L  +   D
Sbjct: 129 SNLQVLYLDLNQITNI--SPLA--GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N+I+ +          L  ++L  N I+++          L  + L +  I +       
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 175 HLTALESL-NLNGNRLK 190
           +L     +   +G  + 
Sbjct: 239 NLVVPNVVKGPSGAPIA 255

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 20/173 (11%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIG-LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
             + +L+   N++         + G  + L  + L  + I E+  +   +   +  +  +
Sbjct: 330 KKLGMLECLYNQLEGK----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 114 DNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPY-------LKTIELQHCQI 165
            N++ ++       +   +  +  + N I  +    F  L         + +I L + QI
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-------NLKTLSLDGN 211
               K+     + L S+NL GN L  + ++              L ++ L  N
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 37/218 (16%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKIS----------------YLTKEAFKSIG-LLNLQR 85
           N T +   +   + ++   + N+                      K        L +L  
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 86  IYL-KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYL 136
           + +     + ++     K L  +  ++++ N+     Q               +++++Y+
Sbjct: 254 VEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 137 NGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
             N +          K+  L  +E  + Q+      A      L SLNL  N++  +  +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPAN 371

Query: 196 VFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
               T  ++ LS   N       L+   N      +  
Sbjct: 372 FCGFTEQVENLSFAHN------KLKYIPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 9e-16
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 46/215 (21%)

Query: 45  NFTALPSTLDSDI--QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT-- 100
           NF  L  T    I    ++L+NN+IS   KE F +     L  I L  + + E+ +++  
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFST--GSPLSSINLMGNMLTEIPKNSLK 478

Query: 101 -----FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRA-------- 146
                FK   +L  +DL  N++  L  D        L  + L+ N  ++           
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 147 -----------------GQFP----KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
                             ++P      P L  +++    I  V++        +  L++ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIK 595

Query: 186 GNRLKHLSESVFFPTPNLKTLSLDGNPW--CCDCH 218
            N    +  S   P        L  +       C 
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 42/192 (21%)

Query: 53  LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-------------- 98
           +      +   +N I++++K   +   L  L++ Y+ NS     +               
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMR---LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 99  -----DTFKYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRA-- 146
                  +  L  L +V++ +         +L     L    ++++ +  N         
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA---LPE--MQLINVACNRGISGEQLK 292

Query: 147 ------GQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFP 199
                    P    ++ I + +  + +   +  +  +  L  L    N+L+    + F  
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGS 351

Query: 200 TPNLKTLSLDGN 211
              L +L+L  N
Sbjct: 352 EIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 30/180 (16%)

Query: 58  QVLDLNNNKISYLTKEAF-KSIG------LLNLQRIYLKNSGIREVHRDTFKYLTILVEV 110
           +VL L ++      +    K I            R++ + + +    R+ F  L      
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD--- 164

Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK 170
            ++ +      + +     +   +    N IT +      +L  L+   + +    + + 
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENI 223

Query: 171 DALIHLTALESLNLNG------NRLKHLSE-------------SVFFPTPNLKTLSLDGN 211
                    E            + LK L++             +     P ++ +++  N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 23/170 (13%)

Query: 45  NFTALPSTLDSDI----------QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---S 91
             T +P     D             +DL  NK++ L+ +   +  L  L  I L     S
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT-TLPYLVGIDLSYNSFS 526

Query: 92  GI-REV-HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF 149
               +  +  T K   I  + D   N+      +       L  L +  N I ++     
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV----- 581

Query: 150 PK--LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF 197
            +   P +  ++++     S+    +          L  ++ + +     
Sbjct: 582 NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 14/142 (9%), Positives = 35/142 (24%), Gaps = 13/142 (9%)

Query: 80  LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW---------LHQDTFLGNDR 130
              +  + L+  G      D    LT L  + L  +             +  +      +
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
              ++     +       F  L       +         K +         +    N + 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDC---INSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 191 HLSESVFFPTPNLKTLSLDGNP 212
            +S++       L+   +  +P
Sbjct: 197 FVSKA-VMRLTKLRQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 34/140 (24%)

Query: 45  NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFK------------------------ 76
             T L           +  +DL+ N  S    +                           
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 77  --SIG-LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133
              I    +L ++ + ++ IR+V+      +++L   D+ DN    +            +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPNISIDLSYVCPYIEAGM 615

Query: 134 LYLNGNPITELRAGQFPKLP 153
             L  +   ++R      + 
Sbjct: 616 YMLFYDKTQDIRGCDALDIK 635

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 9e-20
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 22/169 (13%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
           D  F              +L    ++    +      L ++ +I   NS I+ V     +
Sbjct: 17  DDAFAET--------IKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV--QGIQ 62

Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
           YL  + ++ L+ N++  +   T L N  L  L+L+ N I +L +     L  LK++ L+H
Sbjct: 63  YLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118

Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
             I  +  + L+HL  LESL L  N++  +  +V      L TLSL+ N
Sbjct: 119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 2e-19
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 14/164 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L LN NK++ +  +      L NL  ++L  + I+++   + K L  L  + L  N 
Sbjct: 67  VTKLFLNGNKLTDI--KPLT--NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNG 120

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ +  +  +   +L+ LYL  N IT++      +L  L T+ L+  QI  +    L  L
Sbjct: 121 ISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGL 174

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLR 220
           T L++L L+ N +  L         NL  L L            
Sbjct: 175 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 2e-16
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L L+ NKI  L   + K   L  L+ + L+++GI ++  +   +L  L  + L +N+I
Sbjct: 90  GWLFLDENKIKDL--SSLK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 143

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
             +         +L  L L  N I+++       L  L+ + L    I  +   AL  L 
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLK 197

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLS-LDGNP 212
            L+ L L      +   +         T+   DG+ 
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 4e-11
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 10/155 (6%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           ++ L L NNKI+ +         L  L  + L+++ I ++       LT L  + LS N 
Sbjct: 133 LESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH 186

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ L      G   L VL L               L    T++     + +     +   
Sbjct: 187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDD 242

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
              E  N+  +  +  +E  F     +        
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
           +        PI ++               L+   +          L +++ +  N + +K
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 191 HLSESVFFPTPNLKTLSLDGN 211
            +    +   PN+  L L+GN
Sbjct: 57  SVQGIQYL--PNVTKLFLNGN 75

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C       +  C+     ++P+ + ++ Q+L L++N+I+ L    F S      
Sbjct: 13  CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS------ 62

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
                               L  L E+ L  NQ+  L    F    +L VL L  N +T 
Sbjct: 63  --------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
           L +  F +L +LK + +   ++  + +  +  LT L  L L+ N+LK +    F    +L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 204 KTLSLDGNPWCCDCH-LRSFRNWLLK 228
               L GNPW C+C  +   RNW+  
Sbjct: 162 THAYLFGNPWDCECRDIMYLRNWVAD 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L LN N++  +         L NL  + L N+ I  +       LT L E+ L  NQ
Sbjct: 223 LDELSLNGNQLKDI--GTLA--SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQ 276

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           I+ +      G   L  L LN N + ++       L  L  + L    I  +    +  L
Sbjct: 277 ISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSL 330

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           T L+ L    N++  +S        N+  LS   N 
Sbjct: 331 TKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           ++ LD+++NK+S +         L NL+ +   N+ I ++       LT L E+ L+ NQ
Sbjct: 179 LERLDISSNKVSDI--SVLA--KLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQ 232

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           +  +   T      L  L L  N I+ L       L  L  ++L   QI ++    L  L
Sbjct: 233 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGL 286

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           TAL +L LN N+L+ +S        NL  L+L  N
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  LDL NN+IS L        GL  L  + L  + I  +       LT L  ++L++NQ
Sbjct: 245 LTDLDLANNQISNL--APLS--GLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQ 298

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           +  +          L  L L  N I+++       L  L+ +   + ++  V   +L +L
Sbjct: 299 LEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL 352

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
           T +  L+   N++  L+         +  L L+   W
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.8 bits (213), Expect = 7e-18
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           ++     L    ++    +      L  +  +     GI+ +  D  +YL  L +++ S+
Sbjct: 24  AEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 77

Query: 115 NQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
           NQ+  +   T L N  +L  + +N N I ++       L  L  + L + QI  +  D L
Sbjct: 78  NQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPL 130

Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            +LT L  L L+ N +  +S        +L+ LS    
Sbjct: 131 KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 6e-17
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           +++  ++ +NN+++ +     K   L  L  I + N+ I ++       LT L  + L +
Sbjct: 68  NNLTQINFSNNQLTDI--TPLK--NLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFN 121

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           NQI     D       L  L L+ N I+++ A     L  L+ +   +          L 
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDL---KPLA 174

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +LT LE L+++ N++  +S        NL++L    N
Sbjct: 175 NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 15/154 (9%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
             L L  N+IS +        GL  L  + L  + + ++       L  L  + L  N I
Sbjct: 268 TELKLGANQISNI--SPLA--GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI 321

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
           + +   + L    L+ L+   N ++++ +     L  +  +   H QI  +    L +LT
Sbjct: 322 SDISPVSSLTK--LQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLT 375

Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            +  L LN     +   +      N+   +   N
Sbjct: 376 RITQLGLNDQAWTNAPVNYK---ANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L+LN N++  +         L NL  + L  + I ++       LT L  +   +N+
Sbjct: 289 LTNLELNENQLEDI--SPIS--NLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNK 342

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           ++ +   +      +  L    N I++L       L  +  + L      +   +   ++
Sbjct: 343 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           + + +   N         ++     +     +  N
Sbjct: 399 S-IPNTVKNVTGALIAPATISDGG-SYTEPDITWN 431

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.6 bits (210), Expect = 4e-19
 Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 28/175 (16%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
            D+ F A             L  +  + +T+       + +L  I L N  + ++     
Sbjct: 18  PDSTFKAY--------LNGLLGQSSTANITEA-----QMNSLTYITLANINVTDL--TGI 62

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           +Y   + ++ +++           +     L+ L + G  +T  +      L  L  +++
Sbjct: 63  EYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNR----LKHLSESVFFPTPNLKTLSLDGN 211
            H          +  L  + S++L+ N     +  L        P LK+L++  +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT-----LPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 9/139 (6%)

Query: 75  FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKV 133
                        L  S    +   T   +  L  + L++  +  L   T +     +K 
Sbjct: 17  IPDSTFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL---TGIEYAHNIKD 70

Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
           L +N    T         L  L+ + +    + S     L  LT+L  L+++ +      
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 194 ESVFFPTPNLKTLSLDGNP 212
            +     P + ++ L  N 
Sbjct: 129 LTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + L +NN   +          GL NL+R+ +    +          LT L  +D+S +  
Sbjct: 69  KDLTINNIHATNY--NPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 118 AWLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
                       ++  + L+ N  IT++       LP LK++ +Q   +H      +   
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDF 180

Query: 177 TALESLNLNGNRL 189
             L  L      +
Sbjct: 181 PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKYLTILVEVDLSDNQ 116
            +LD++++              L  +  I L  N  I ++     K L  L  +++  + 
Sbjct: 115 TLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDG 170

Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELR 145
           +        + +  +L  LY     I   +
Sbjct: 171 VHDY---RGIEDFPKLNQLYAFSQTIGGKK 197

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 81.8 bits (202), Expect = 1e-18
 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLK--SKLYSH 234
                L L GN L  L   +    P L+T  L  NPW CDC L   R WL     +    
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR 90

Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACP 260
            L C  P  L+ +    +   E    
Sbjct: 91  DLRCVAPPALRGRLLPYLAEDELRAA 116

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 24 CPDTCRCKWTLGKKSALCKDANFT--ALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
          CP  C C  T       C     T  +LP+    D   L L  N ++ L      +  L 
Sbjct: 2  CPAPCSCAGT----LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDA--LP 55

Query: 82 NLQRIYLKN 90
           L+  +L  
Sbjct: 56 ALRTAHLGA 64

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 78.6 bits (194), Expect = 5e-18
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +T  ES     +  +  +   V G+P+P + W  NG +L+ S +   +    +    
Sbjct: 4   APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEIN 360
               + L N T ++ G+YT  A+N  G    +IS      P I+
Sbjct: 61  HG-CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
               +  K  SM + E G +   SC   G+P PT+ WL  GQVL  S+   +   +  + 
Sbjct: 13  LAARILTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS- 70

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                +  + +V   D G Y+   EN  G    E +L
Sbjct: 71  -----TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 107 LVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
           + E+ L +++      +      + L+ L      +T +     PKL  LK +EL   ++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76

Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
               +        L  LNL+GN++K LS         NLK+L L           R    
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 225 WLLKS 229
            LL  
Sbjct: 137 KLLPQ 141

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 31/159 (19%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           SD++ L L+N++ +    E   +     L+ +   N G+  +       L  L +++LSD
Sbjct: 17  SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N+++   +        L  L L+GN I +L               ++           L 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS-------------TIEP----------LK 110

Query: 175 HLTALESLNLNGN---RLKHLSESVFFPTPNLKTLSLDG 210
            L  L+SL+L       L    E+VF   P L    LDG
Sbjct: 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT--YLDG 147

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C     T L  T  + +  L+ + NK++ L            L  +    + + E+    
Sbjct: 92  CDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEI---D 143

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
             + T L E+D   N+   + +       +L  L  + N ITEL      +   L  +  
Sbjct: 144 VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNC 198

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
               I  +    L     L  L+ + N+L  +  +   P   L       NP
Sbjct: 199 DTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 19/155 (12%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L   +N I+ L           NL  +   ++ +  +       LT L   +   N+
Sbjct: 66  LTKLICTSNNITTLDLS-----QNTNLTYLACDSNKLTNLDVTPLTKLTYL---NCDTNK 117

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           +    +     N  L  L    N +TE+      +   L  ++    +  +     +   
Sbjct: 118 LT---KLDVSQNPLLTYLNCARNTLTEIDVSHNTQ---LTELDCHLNKKITK--LDVTPQ 169

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           T L +L+ + N++  L  S       L  L+ D N
Sbjct: 170 TQLTTLDCSFNKITELDVSQN---KLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 18/167 (10%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
             T +  T  + +   D + N ++ L            L  ++   + + E+      + 
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLS-----KLTTLHCIQTDLLEI---DLTHN 274

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
           T L+       +   + +     N +L +L      ITEL      + P L  + L + +
Sbjct: 275 TQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTE 329

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +  +    + H T L+SL+     ++  S       P L        
Sbjct: 330 LTELD---VSHNTKLKSLSCVNAHIQDFSSVGKI--PALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 7e-16
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  LD + NKI+ L            L R+    + I ++          L  +D S N+
Sbjct: 172 LTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL----------------KTIEL 160
           +  +         +L     + NP+TEL      KL  L                + I  
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           Q      + +  + H T L  L+     +  L        P L  L L+  
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 27/170 (15%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
            D NF +                     +++E      L  L  +   NS I ++     
Sbjct: 16  PDDNFASE--------VAAAFEMQATDTISEE-----QLATLTSLDCHNSSITDM--TGI 60

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
           + LT L ++  + N I  L       N  L  L  + N +T L       L  L  +   
Sbjct: 61  EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCD 114

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
             ++  +    +     L  LN   N L  +  S       L  L    N
Sbjct: 115 TNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHN---TQLTELDCHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 41  CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           C     T L  +  S +  L      +  +       +       IY +  G R++    
Sbjct: 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL-------IYFQAEGCRKIKELD 292

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
             + T L  +D     I  L       N +L  LYLN   +TEL      K   LK++  
Sbjct: 293 VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSHNTK---LKSLSC 346

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-----NLKTLSLDGNP 212
            +  I      ++  + AL +      +   + +            +   L   GNP
Sbjct: 347 VNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 82  NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
           N          ++     + + L  L  +D  ++ I  +          L  L    N I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI 76

Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
           T L      +   L  +     ++ ++    +  LT L  LN + N+L  L  S     P
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN---P 127

Query: 202 NLKTLSLDGNP 212
            L  L+   N 
Sbjct: 128 LLTYLNCARNT 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGN--DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
                E+DL   +I  +     LG   D+   +  + N I +L    FP L  LKT+ + 
Sbjct: 18  AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVN 72

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLR 220
           + +I  + +     L  L  L L  N L  L +        +L  L +  NP     H R
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 132

Query: 221 SFRNWLLKS 229
            +  + +  
Sbjct: 133 LYVIYKVPQ 141

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
           V L+   I    Q T       + L L G  I  +       L     I+    +I  + 
Sbjct: 2   VKLTAELIEQAAQYTNAVR--DRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL- 57

Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
            D    L  L++L +N NR+  + E +    P+L  L L  N
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 33/161 (20%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
              + LDL   KI  +  E   +  L     I   ++ IR++  D F  L  L  + +++
Sbjct: 19  VRDRELDLRGYKIPVI--ENLGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           N+I  + +        L  L L  N + EL              +L            L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELG-------------DLDP----------LA 110

Query: 175 HLTALESLNLNGN---RLKHLSESVFFPTPNLKTLSLDGNP 212
            L +L  L +  N     KH    V +  P ++   LD   
Sbjct: 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR--VLDFQK 149

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 253 KAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLL 309
            + E    P    K +S  + E G +V + C +   P P + W  N +++  ++    L 
Sbjct: 8   HSHEHKRAPMFIYKPQSKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           ++  G       V++ + +V   DAG YT  A N  G  +    LD
Sbjct: 67  QDNTG------RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
            PP   +      +RE G +V MS  V G+P+P + WL N Q +        EE EG   
Sbjct: 4   APPTFKVSLMDQSVRE-GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG-- 60

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                 + +      DAG YTC A N  G    E  L+
Sbjct: 61  ---LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
                 E      +     +V  + G  + ++C V+GDP P + WL N + L  +    L
Sbjct: 107 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL 166

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD--LPE 358
           + E G      +   T+  V+  D+G+Y    +N  G+ + + ++   +PE
Sbjct: 167 KFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 267 ESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
             + I+     + +  +V Y   +  + W  NG  +  S                   + 
Sbjct: 9   TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI------WLQ 62

Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISL 354
           +   T  D G+Y     + +      + L
Sbjct: 63  INEPTPNDKGKYVMELFDGKTGHQKTVDL 91

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP V   E   +R       +   V G+P PT+ WL NGQ L  S    +E  +   + E
Sbjct: 8   PPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             +       T  + G YT  A+N  G A+  I+    +
Sbjct: 65  GCLLFN--KPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            PP        +  + G    M   V G P P + W LNG+ + +     +   E     
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG--- 60

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
               S+    V   DAG Y C A+N  G A+  + LD
Sbjct: 61  --LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
            P+       +  + G    M C V G P P + W L+G+ +   S   +L  E G    
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH-- 66

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               S+ +  VT  DAG YTC A N  G  S  + L
Sbjct: 67  ----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLE 310
           V+       P        V    G  V++     G P+P I W     ++ N+  + ++ 
Sbjct: 96  VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV 155

Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                +L   +       V   DAG Y   A+N  G     + LD
Sbjct: 156 TRSFTSLVFPN------GVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           A  P+   +   +      N T+ C V G P+P + W   G+ +         +E     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 + + +VTD DA  Y   A N  G+ SG  SL
Sbjct: 62  H----QLIIASVTDDDATVYQVRATNQGGSVSGTASL 94

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 80.0 bits (197), Expect = 2e-16
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 239 TEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG 298
            +    + +        E      +     +V  + G  + ++C V+GDP P + WL N 
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 260

Query: 299 QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD--L 356
           + L +     L+ E G      +   T+  V+  D+G+Y    +N  G+ + + ++   +
Sbjct: 261 KALASDDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

Query: 357 PE 358
           PE
Sbjct: 316 PE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           +    P+     S  +     NV + C V     E  I+W  + + +     +  + ++G
Sbjct: 3   DPFTGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDG 59

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                   ++ +   +  DAG Y    ++ RG     + L
Sbjct: 60  IC------TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 93

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 6/95 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              ++  +  +   A G    S   Y   +  + W  NG  +  S               
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI--- 164

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               + +   T  D G+Y     + +      + L
Sbjct: 165 ---WLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 4/130 (3%)

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
           +    + E+ L + +      +        L+ L L    +  +     PKLP LK +EL
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78

Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHL 219
              +I          L  L  LNL+GN+LK +S          LK+L L           
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 220 RSFRNWLLKS 229
           R     LL  
Sbjct: 139 RESVFKLLPQ 148

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 31/162 (19%)

Query: 54  DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
            + ++ L L+N K +    E   +   +NL+ + L N G+  V       L  L +++LS
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
           +N+I             L  L L+GN + ++               L+           L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS-------------TLEP----------L 116

Query: 174 IHLTALESLNLNGNRLKHLS---ESVFFPTPNLKTLSLDGNP 212
             L  L+SL+L    + +L+   ESVF   P L    LDG  
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT--YLDGYD 156

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 75.3 bits (185), Expect = 3e-16
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 233 SHPLSCTEPGMLQTK--HWDDVKAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPE 289
           S P S      ++ +    ++V  ++    P  T     M + E G      C V G P+
Sbjct: 12  SSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDCKVEGYPD 70

Query: 290 PTILWLLNGQVLHNSS-FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
           P ++W  +   +  S  F +  +EEG+       S+T+  V   D  +YTC A N  G A
Sbjct: 71  PEVMWFKDDNPVKESRHFQIDYDEEGNC------SLTISEVCGDDDAKYTCKAVNSLGEA 124

Query: 349 S 349
           +
Sbjct: 125 T 125

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.0 bits (199), Expect = 3e-16
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L      + Y +    K++  +    +    S     +         +  + L+   
Sbjct: 395 LDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
           +  L     L    +  L L+ N +  L       L  L+ ++     + +V  D + +L
Sbjct: 453 LTVLCHLEQLLL--VTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV--DGVANL 507

Query: 177 TALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
             L+ L L  NRL+  +        P L  L+L GN  C +  ++  
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  LDL++N++  L         L  L+ +   ++ +  V  D    L  L E+ L +N+
Sbjct: 465 VTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR 519

Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELR------AGQFPKLPYLKT 157
           +        L +  RL +L L GN + +        A   P +  + T
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP +++ +      A  G  +T SC   G PEP I W  NG+++  +   +L+       
Sbjct: 96  PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--- 152

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 +T+ N+ + D G Y C A N  G    +  L
Sbjct: 153 -----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 66.7 bits (163), Expect = 6e-13
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 7/90 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                   S    + G +  + C V   P P + WL + + +   S +       + L  
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL-- 59

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                 + N+   D G Y C          
Sbjct: 60  -----QILNINKSDEGIYRCEGRVEARGEI 84

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
           A++    P +T     V        T  C V   P+P I W  N  ++          E 
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN 60

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
           G  L       T+ +V D D G Y C A N  G A
Sbjct: 61  GQLL-------TILSVEDSDDGIYCCTANNGVGGA 88

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
            P +T     V    G    + C   G+P+P++ W+     L  +S   +LE        
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG------ 153

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               S+ + NV   DAG+Y C A+N  G A 
Sbjct: 154 ----SLRIHNVQKEDAGQYRCVAKNSLGTAY 180

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 72.8 bits (179), Expect = 5e-16
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP +    +       G   + C   GDP P I WL  G            +E+G     
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG----- 62

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++ + N+   D G YTC A +  G  S    L
Sbjct: 63  ---TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 256 EFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
                P +T++  S  +   G N      V   P   + W  NG  L  SS        G
Sbjct: 4   TLDHAPRITLRMRSHRVPC-GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                  +++ + +    D+G Y     N +G AS
Sbjct: 63  ------VLTLEILDCHTDDSGTYRAVCTNYKGEAS 91

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 22/170 (12%)

Query: 42  KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
           ++   + L   LD     L+LNN  +S L +         +L+ +    + + E+  +  
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELP-ELP 110

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
           + L  L+  + +   ++ L          L+ L ++ N + +L   +     +LK I++ 
Sbjct: 111 QSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVD 161

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +  +  +         +LE +    N+L+ L E      P L  +  D N
Sbjct: 162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
             ++LP      ++ L  + N ++ L +       L +L         + ++        
Sbjct: 82  GLSSLPELP-PHLESLVASCNSLTELPELPQS---LKSLLVDNNNLKALSDL-------P 130

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
            +L  + +S+NQ+  L +        LK++ ++ N + +L        P L+ I   + Q
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSF--LKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQ 184

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +  + +  L +L  L ++  + N LK L +       +L+++    N
Sbjct: 185 LEELPE--LQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 37/184 (20%)

Query: 45  NFTALPSTLD-SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103
               LP   +   +  +  +NN +  L          L+L+ I   N+ + E+     + 
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEEL--PELQN 235

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG---------------Q 148
           L  L  +   +N +  L       +  L+ L +  N +T+L                   
Sbjct: 236 LPFLTTIYADNNLLKTL--PDLPPS--LEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291

Query: 149 FPKLPY-LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
             +LP  L  +     +I S+         +LE LN++ N+L  L        P L+ L 
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELPALP----PRLERLI 343

Query: 208 LDGN 211
              N
Sbjct: 344 ASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 34/182 (18%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
            F+ L     + +  L+ ++N+I  L           +L+ + + N+ + E+       L
Sbjct: 288 IFSGLSELPPN-LYYLNASSNEIRSLCDL------PPSLEELNVSNNKLIELP-ALPPRL 339

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL--------------RAGQFP 150
             L     S N +A +       N  LK L++  NP+ E                  + P
Sbjct: 340 ERL---IASFNHLAEV--PELPQN--LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392

Query: 151 KLPY-LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD 209
           +LP  LK + ++   +            ++E L +N  R+    E     T  L+    +
Sbjct: 393 ELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

Query: 210 GN 211
            +
Sbjct: 449 HH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 30/169 (17%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
             T LP    S +  LD++ N  S L++         NL  +   ++ IR +        
Sbjct: 268 YLTDLPELPQS-LTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRSL----CDLP 316

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY-LKTIELQHC 163
             L E+++S+N++  L          L+ L  + N + E+     P+LP  LK + +++ 
Sbjct: 317 PSLEELNVSNNKLIEL--PALPPR--LERLIASFNHLAEV-----PELPQNLKQLHVEYN 367

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            +            ++E L +N + L  + E       NLK L ++ NP
Sbjct: 368 PLREFPDI----PESVEDLRMN-SHLAEVPELP----QNLKQLHVETNP 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 30/169 (17%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS--------GIREVHRDTFKYLTI-- 106
           +Q    +++ ++ +  EA     + +    Y   S        G  E        L    
Sbjct: 13  LQEPLRHSSNLTEMPVEAEN---VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 107 ---LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
                E++L++  ++ L +     +  L+ L  + N +TEL       L  L        
Sbjct: 70  DRQAHELELNNLGLSSLPEL--PPH--LESLVASCNSLTELPEL-PQSLKSLLVDNNNLK 124

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
            +  +          LE L ++ N+L+ L E     +  LK + +D N 
Sbjct: 125 ALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNS 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 28/138 (20%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
               LP+     ++ L  + N ++ + +         NL++++++ + +RE   D  + +
Sbjct: 328 KLIELPALPPR-LERLIASFNHLAEVPEL------PQNLKQLHVEYNPLREFP-DIPESV 379

Query: 105 TI----------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
                             L ++ +  N +          +  ++ L +N   + +     
Sbjct: 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREF--PDIPES--VEDLRMNSERVVDPYEFA 435

Query: 149 FPKLPYLKTIELQHCQIH 166
                 L+    +H   H
Sbjct: 436 HETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 18/99 (18%)

Query: 126 LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ--------IHSVHKDALIHL- 176
           + N  L+    + + +TE+   +   +           +             + A+  L 
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 177 ----TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
                    L LN   L  L E      P+L++L    N
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCN 101

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEE 313
           +    PPN   +   +    G  V +   V G P P + +  +G  + +S  F + +E +
Sbjct: 98  KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             +L        +      D+G Y+  A N  G A+    L
Sbjct: 158 LYSL-------LIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
            P  T     V+   G   T   ++ G P P + W  +GQV+  S+   +          
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG--- 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                +T+  VT  ++G Y+  A N  G A+    L
Sbjct: 62  --RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.0 bits (177), Expect = 9e-16
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +      +  +AG    +     G P+PT  W +       +   L++ +       
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT--- 58

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              SI   +    D+G Y    +N  G       +
Sbjct: 59  ---SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 77.1 bits (190), Expect = 9e-16
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
           PP    K   V    G +V + C + G P   + W  + + L +   + ++ E    ++ 
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI- 250

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                  + NV   D GEY C A N  G+ +   S+
Sbjct: 251 ------HILNVDSADIGEYQCKASNDVGSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP   +K   V    G + T  C+V G     I W  + + +       +   E  A   
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--- 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++T+  VT  DAG+YTCYA N+ G  S    L
Sbjct: 62  ---TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP    K E   I +   +    C + G PE  +LW  +   +  SS   +   E  A  
Sbjct: 98  PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA-- 155

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                + ++N++  D+G+YTC A N  G+AS   SL 
Sbjct: 156 ----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P     +++     G  + +SC V  +P  +I W  +  VL   +   L+         
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG---- 155

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPE 358
           + + + +   +D D G Y C A N  G    E  L   D+P 
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             N T  E        G VT+ C   G+P P I W         +  D   +   +   +
Sbjct: 7   LKNETTYE-------NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
               S+ + +V   D+G Y C A +  G     + L   +I  A       + Y    G 
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL---DIEYAPKFISNQTIYYSWEGN 116

Query: 379 SV---CVVS 384
            +   C V 
Sbjct: 117 PINISCDVK 125

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P +    +   +         +    G+P PT +W  +G+ +       L E++G    
Sbjct: 6   KPVIVTGLQDTTVSS-DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF-- 62

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                + +      D+G YTC  +N  G+ S
Sbjct: 63  ----FLEIHKTDTSDSGLYTCTVKNSAGSVS 89

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP +++ +      A  G  +T SC   G PEP I W  NG+++  +   +L+       
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--- 248

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
                 +T+ N+ + D G Y C A N  G    +  L        
Sbjct: 249 -----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                   S    + G +  + C V   P P + WL + + +   S +       + L  
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ- 156

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
                 + N+   D G Y C        A GEI 
Sbjct: 157 ------ILNINKSDEGIYRCEGRV---EARGEID 181

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
              VTI  S V    G +   +C   G+PE    +   G+ + ++    + +E     L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL- 62

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                 T++N    DAG Y C A + +G  
Sbjct: 63  ------TIYNANIEDAGIYRCQATDAKGQT 86

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP  T         +GG  +  C   GDP P I+W   G+ + N  F+++E ++G     
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS---- 61

Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISL 354
               + +  +    D   Y C A N  G  S    L
Sbjct: 62  -GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
            + Q     P + +   + + E     TM C   G+P+P I W  +   +  S+ +   +
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
           +      E   ++ +    + D G+Y C A N  G  
Sbjct: 160 QLRS---ESIGALQIEQSEESDQGKYECVATNSAGTR 193

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
             P+ +   +   + E G +  + C V G P P I WLLNGQ +  +       E G A 
Sbjct: 10  VAPSFSSVLKDCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVA- 64

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 + + +    D G YTC AEN  G  S    +
Sbjct: 65  -----ELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLLEEEEGDA 316
            P   +K +   I E G  VT +C V G+P+P I W  +G+ +   S  + +  + +G  
Sbjct: 8   APFFEMKLKHYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG-- 64

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               + S+     T  D G YT  A N +G  S
Sbjct: 65  ----TCSLHTTASTLDDDGNYTIMAANPQGRIS 93

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP V  ++S+V   A  G +VT+ C   G PEPT+ W  +G+ + N   D    +E    
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED----DEKHIF 249

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            + S  +T+ NV   D  EY C AEN  G     I L
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 7/97 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                   +    + G +  + C V     PTI+W   G+ +             + L  
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-- 157

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                 +  +   D G Y C    +         + +
Sbjct: 158 -----QIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWL-LNGQVL--HNSSFDLLEEEEGDA 316
             V I  S      G +    C V GD  +  I W   NG+ L  +     ++  ++  +
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
                 ++T++N    DAG Y C      G      +++ + +
Sbjct: 63  ------TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 4e-15
 Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 52/246 (21%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
           N ++LP  L   I VL++  N +  L +         +L+ +   ++ +  +  +    L
Sbjct: 70  NLSSLPDNLPPQITVLEITQNALISLPEL------PASLEYLDACDNRLSTL-PELPASL 122

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
             L   D+ +NQ+  L          L+ +  + N +T L          L+ + +++ Q
Sbjct: 123 KHL---DVDNNQLTML--PELPAL--LEYINADNNQLTMLPE----LPTSLEVLSVRNNQ 171

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------------------------ 200
           +  + +       +LE+L+++ N L+ L                                
Sbjct: 172 LTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL 227

Query: 201 --PNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPGMLQTKHWDDVKAQE 256
                 T+ L+ NP      +R   +       Y  P        G   T H     A  
Sbjct: 228 SLDPTCTIILEDNPL--SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

Query: 257 FACPPN 262
              P N
Sbjct: 286 AWFPEN 291

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 27/182 (14%)

Query: 31  KWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN 90
           KW         ++   + L   L +    L LN   +S L            +  + +  
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP-----QITVLEITQ 89

Query: 91  SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
           + +  +  +    L  L   D  DN+++ L +     +  LK L ++ N +T L     P
Sbjct: 90  NALISLP-ELPASLEYL---DACDNRLSTLPEL--PAS--LKHLDVDNNQLTML-----P 136

Query: 151 KLP-YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD 209
           +LP  L+ I   + Q+  + +      T+LE L++  N+L  L E       +L+ L + 
Sbjct: 137 ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPELP----ESLEALDVS 188

Query: 210 GN 211
            N
Sbjct: 189 TN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 3e-12
 Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 25/217 (11%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
             + LP    S ++ LD++NN+++ L +          L+ I   N+ +  +     +  
Sbjct: 111 RLSTLPELPAS-LKHLDVDNNQLTMLPEL------PALLEYINADNNQLTML----PELP 159

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA--GQFPKLPYLKTI-ELQ 161
           T L  + + +NQ+ +L +     +  L+ L ++ N +  L A   +       +     +
Sbjct: 160 TSLEVLSVRNNQLTFLPE--LPES--LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRS 221
             +I  +  + ++ L    ++ L  N    LS  +               P         
Sbjct: 216 ENRITHI-PENILSLDPTCTIILEDNP---LSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 222 FRN--WLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQE 256
            +N      +   +      +   +    W   + +E
Sbjct: 272 QQNTLHRPLADAVTAWFPENKQSDVSQ-IWHAFEHEE 307

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P +T   E+      G ++ +SC   G+P P I+W  + + L   S  +L++       
Sbjct: 10  APTITGNLENQTTSI-GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR---- 64

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               ++T+  V   D G YTC A ++ G A  E   
Sbjct: 65  ----NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 4e-15
 Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 30/217 (13%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
             T+LP      +Q L +++N+++ L            L +++  N+ +  +        
Sbjct: 172 QLTSLPMLPSG-LQELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLP----ALP 220

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
           + L E+ +S N++  L          LK L ++GN +T L          L ++ +   Q
Sbjct: 221 SGLKELIVSGNRLTSL--PVLPSE--LKELMVSGNRLTSLPML----PSGLLSLSVYRNQ 272

Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHL----- 219
           +  +  ++LIHL++  ++NL GN L   +         + +      P            
Sbjct: 273 LTRL-PESLIHLSSETTVNLEGNPLSERTLQALR---EITSAPGYSGPIIRFDMAGASAP 328

Query: 220 RSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQE 256
           R  R   L +  +  P    EP       W     ++
Sbjct: 329 RETRALHLAAADWLVPAREGEP--APADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 47  TALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106
           T LP  L + I  L + +N ++ L            L+ + +  + +  +       L  
Sbjct: 53  TTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLP-VLPPGLLE 105

Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
           L         +             L  L++ GN +T L        P L+ + +   Q+ 
Sbjct: 106 LSIFSNPLTHL-----PALPSG--LCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLA 154

Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           S+        + L  L    N+L  L          L+ LS+  N
Sbjct: 155 SLPAL----PSELCKLWAYNNQLTSLPMLP----SGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 47  TALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106
             + + L++   VL++  + ++ L           ++  + + ++ +  +       L  
Sbjct: 32  QKMRACLNNGNAVLNVGESGLTTLPDCLPA-----HITTLVIPDNNLTSL-PALPPELRT 85

Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
           L   ++S NQ+  L      G   L +       +  L          L  + +   Q+ 
Sbjct: 86  L---EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT 134

Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           S+          L+ L+++ N+L  L          L  L    N
Sbjct: 135 SLPV----LPPGLQELSVSDNQLASLPALP----SELCKLWAYNN 171

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 74.2 bits (182), Expect = 4e-15
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH-----NSS 305
           DV  +    P       +      GG+V   C VY D +P I W+ + +        +  
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168

Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
             L   +        +  + LFNVT+ DAGEY C   N  G A+    L 
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 260 PPNVTIKESM----VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
            P  T  E M        A   V   C   G+P PT+ WL NG+           +    
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                  S+ + +V   D G YTC  EN  G+ +    LD
Sbjct: 75  -----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.6 bits (173), Expect = 5e-15
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP +            G   +SC   G P PTILW  +G ++      + + E G     
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG----- 62

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               + +      D G YTC A    G A+    +
Sbjct: 63  ---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-EEEGDALF 318
           P +V +  +        +  +   V G P P++ WL NG VL+ +SF   E  E      
Sbjct: 4   PASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
            +   + L   T ++ G YT  A N  G AS  I     +
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 61/207 (29%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C          C     T++P+ + S    L+L +NK+  L    F        
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK------ 50

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL---KVLYLNGNP 140
                               LT L ++ LS NQI  L    F   D+L    +LYL+ N 
Sbjct: 51  --------------------LTQLTKLSLSQNQIQSLPDGVF---DKLTKLTILYLHENK 87

Query: 141 ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT 200
           +  L  G F K                        LT L+ L L+ N+LK + + +F   
Sbjct: 88  LQSLPNGVFDK------------------------LTQLKELALDTNQLKSVPDGIFDRL 123

Query: 201 PNLKTLSLDGNPWCCDCH-LRSFRNWL 226
            +L+ + L  NPW C C  +     WL
Sbjct: 124 TSLQKIWLHTNPWDCSCPRIDYLSRWL 150

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.4 bits (178), Expect = 7e-15
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +  +   V  + G    +SC + G P P I W   G+ L  S    +  +       
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH--- 63

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              ++T+      D G YTC A N  G   
Sbjct: 64  ---TLTVMTEEQEDEGVYTCIATNEVGEVE 90

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
            P   +KE       G  + +     G P P + W    ++L NS    +   E    L 
Sbjct: 104 HPGYPLKEKYYGAV-GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL- 161

Query: 319 EKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
                  + NV     AG+Y     N+ G     + ++
Sbjct: 162 ------VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 73.4 bits (180), Expect = 7e-15
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL------HNS 304
           DV  +    P       +      G +V   C VY D +P I WL + +V         +
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164

Query: 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            +  + +       E  V + L NV++ D GEY C A N  G A     L 
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
           D  A  +  P  +  K   V   A   V   C   G+P P+I WL NG+           
Sbjct: 8   DTGAPYWTRPERMDKKLLAV--PAANTVRFRCPAAGNPTPSISWLKNGREFRGEH----- 60

Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
              G  L  +  S+ + +V   D G YTC  EN  G+     +LD+ E
Sbjct: 61  RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.9 bits (189), Expect = 8e-15
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEE 313
                PP +         E G +V + C   G+P P I W L+G+ + N+  + + +   
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            +      ++IT  +V   D G Y C A++  G A     L+
Sbjct: 484 VNGDVVSYLNIT--SVHANDGGLYKCIAKSKVGVAEHSAKLN 523

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +  I       + G     +C   G+P  T+ W+ +G+ + +S   L           
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL----------- 391

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
                 + +V   D G Y C+  N R +A     L L        + +      +  G S
Sbjct: 392 -----RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446

Query: 380 V---CVVS 384
           V   CV  
Sbjct: 447 VFLKCVAG 454

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P  +         + G  +T+ C V G   P  I W L+GQ +                 
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG----- 673

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
            +   +T+  V    AG +TC+A N+ G+      L     P  
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW 717

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP   ++ +      G +  + C   G P+P + W            DL + +       
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR---V 770

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
           +  ++ + N+   + G Y C A N  G+  
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGL 800

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                 K  M        + + C   G P P   W    +        +L     D + +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN----DRVKQ 303

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            S ++ + +    D+G+Y C   N  G  S E  L 
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +   E   I   G  + ++C V G P  +I+W  + + L  +         G     
Sbjct: 527 LPYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNG----- 579

Query: 320 KSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
              ++ + NV  + D   YTC A+N  G ++   SL++  + L   +          +G 
Sbjct: 580 ---TLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGPAQVGQ 635

Query: 379 SV---CVVS 384
            +   C V 
Sbjct: 636 YLTLHCSVP 644

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P    +  + +         + C   G+P P I+W+ +          L +      L 
Sbjct: 38  GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 97

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                       ++ A  Y C A N  G+ 
Sbjct: 98  FPPFRAE-DYRQEVHAQVYACLARNQFGSI 126

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 8/98 (8%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
                       +      G +  + C +     D    + W  + +      +    E 
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN----YFPGAEY 189

Query: 313 EGDALFEKSVSITLFNVTDLDA-GEYTCYAENIRGNAS 349
           +G  L   S  + +  V   D    Y C  ++     +
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 70.0 bits (172), Expect = 8e-15
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +          AG +V +   V G    T  W+   + +  S    +E  E  +   
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--- 63

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               +T+        G YT   EN  G+   +++L
Sbjct: 64  ---KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
            P +  + +S  + + G +      V G P+P   W  NG  +  S        E+    
Sbjct: 5   APKIFERIQSQTVGQ-GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC- 62

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                 + + +VT  D+      A NI G  S
Sbjct: 63  -----ELVIRDVTGEDSASIMVKAINIAGETS 89

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 72.2 bits (177), Expect = 9e-15
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P ++ ++   V    G NVT+ C+  G+P P I W    + + +++        G  L  
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE---ISTSGAVL-- 167

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 +FN+   D G Y C AENIRG    +  +
Sbjct: 168 -----KIFNIQLEDEGIYECEAENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDAL 317
            P V +KE       G  + + C          +  WLLN   +       +  ++   +
Sbjct: 15  RPEVRVKE-------GKGMVLLCDPPYHFPDDLSYRWLLNEFPVF------ITMDKRRFV 61

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
            + + ++ + NV   D G Y+C+  +     S
Sbjct: 62  SQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 72.3 bits (177), Expect = 1e-14
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDA 316
              V   E  V       V +SC   G   P + W  +             +    E   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
            F  +  IT  +VT  D G YTC      GN+ GE+ + L
Sbjct: 64  TFLPT-GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP+            G    ++C    G P     W  +G V+  +            + 
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166

Query: 319 EKSVSI-TLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             +        ++  D GEY+C A N  G      ++
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 76.3 bits (187), Expect = 1e-14
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +T          G ++ +SC   G+P P I+W  + + L   S  +L++        
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR----- 720

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++T+  V   D G YTC A ++ G A  E   
Sbjct: 721 ---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 22/133 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
               +  ES+V    G  V +     G P P I W  NG  L ++       + G  L  
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH----TIKAGHVL-- 383

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL-----PEINLATTLSKTDSWYML 374
                T+  V++ D G YT    N          + L     P+I   + +S  DS    
Sbjct: 384 -----TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS---Y 435

Query: 375 VLGISV---CVVS 384
             G +    C V 
Sbjct: 436 QYGTTQTLTCTVY 448

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 61.7 bits (149), Expect = 5e-10
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 7/132 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSF--DLLEEEEGD 315
              V      +    G  + ++C    +    I   W        +       L+ + G 
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLV 375
            + +   ++T+  VT  D G YTC A +          + + E       S  +S     
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343

Query: 376 LGISV---CVVS 384
           +G  V       
Sbjct: 344 VGERVRIPAKYL 355

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG-QVLHNSSFDLLEEEEGDALF 318
            P +T++  M   E   +V++ C         + W   G Q L     +L      +   
Sbjct: 550 GPEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608

Query: 319 EKSVSITLF-------------NVTDLDAGEYTCYAENIRGNASGEISLDL 356
              ++ T+F             N +  D G+Y C A++ +      +   L
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P ++I++ ++  +A   + ++C   G  +   LW  N              +       
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDG-----L 83

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
              ++T+  V   D G Y C+       +   + +    
Sbjct: 84  FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 23/120 (19%), Positives = 30/120 (25%), Gaps = 31/120 (25%)

Query: 273 EAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEK----------- 320
           + G   T++C VY  P P  I W    +    +              E+           
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495

Query: 321 ----------------SVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINL 361
                               TL       +  Y C A N  G     IS      PEI L
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITL 555

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 11/105 (10%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSFDLL 309
                F    +       +       V + C          L       + + + +    
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           + ++G          T+ +     AG   C A+    +    + +
Sbjct: 180 DSKKG---------FTIPSYMISYAGMVFCEAKINDESYQSIMYI 215

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
           V        P +    ++   E G  V ++C V+  P  TI W  +GQ+L +S++  ++ 
Sbjct: 11  VPRGSHMYAPKLQGPVAVYTWE-GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKI 69

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                    +  + +   ++ D G Y C A N  G  S E  L
Sbjct: 70  YNTP----SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 260 PPNVTIKESMVIRE----AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
            P  T  E M  R     A   V   C   G+P PT+ WL NG+           +    
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                  S+ + +V   D G YTC  EN  G+ +    LD
Sbjct: 64  -----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL----LNGQVLHNSS- 305
           DV  +    P       +      G +V   C VY D +P I WL    +NG  +     
Sbjct: 213 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272

Query: 306 --FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
               +L+    +   ++   ++L NVT  DAGEYTC A N  G +     L 
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 70.0 bits (171), Expect = 3e-13
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
           D  A  +  P  +  K   V   A   V   C   G+P P+I WL NG+           
Sbjct: 116 DTGAPYWTRPERMDKKLLAVP--AANTVRFRCPAAGNPTPSISWLKNGREFRGE-----H 168

Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
              G  L  +  S+ + +V   D G YTC  EN  G+     +LD
Sbjct: 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P     ++  ++  +G  V +SC    G P    +W+ +G  L  S   L+  +      
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ------ 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                + + N +  D+G Y+C     +    
Sbjct: 62  ----RLQVLNASHEDSGAYSCRQRLTQRVLC 88

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 15/178 (8%)

Query: 43  DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN----SGIREVHR 98
           DA    L   L   ++VL +        + E  +      L  + L +         +  
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISA 194

Query: 99  DTFKYLTILVEVDLSDNQIAWL---HQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPY 154
                   L  + L +  +               +L+ L L+ N + +   A        
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
           L ++ L    +  V K        L  L+L+ NRL           P +  LSL GNP
Sbjct: 255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 43  DANFTALPSTLD---SDIQVLDLNNNKISYLT--KEAFKSIGLLNLQRIYLKNSGIRE-- 95
            A+              +  LDL++N          A   +    LQ + L+N+G+    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 96  -VHRDTFKYLTILVEVDLSDNQIAWL-HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP 153
            V          L  +DLS N +       +     +L  L L+   + ++  G   KL 
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL- 276

Query: 154 YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
               ++L + ++      +   L  + +L+L GN    
Sbjct: 277 --SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 20/169 (11%)

Query: 46  FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL--NLQRIYLKNSGIREVHRDTFKY 103
              L      D+ +L+L N   +       +    L   L+ + +  +       +  + 
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
              L  +DLSDN          LG   L         I+ L   +FP L  L        
Sbjct: 172 FPALSTLDLSDNPE--------LGERGL---------ISALCPLKFPTLQVLALRNAGME 214

Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGN 211
               V          L+ L+L+ N L+  + +     P  L +L+L   
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 24  CPDTCRCKWTLGK----KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG 79
             ++C C ++  K     +  C  A    L     S   +L   + +      +    I 
Sbjct: 9   DEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEAD--LGQFTDIIK 66

Query: 80  LLNLQRIYLKNSGI-REVHRDTFKYLTI--LVEVDLSDNQIAWLH--QDTFLGNDRLKVL 134
            L+L+R+ ++ + I   +     + L I  L E+ L + ++               L +L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 135 YLNGNPITELRAG----QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL- 189
            L         A     Q    P LK + +      +   + +    AL +L+L+ N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 190 --KHLSESVFFPT-PNLKTLSLDGN 211
             + L  ++     P L+ L+L   
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNA 211

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 69.3 bits (169), Expect = 2e-14
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
             +             R  GG+V + C   G P P I W   GQ  ++    L +    D
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 316 ALFEKSV-------SITLFNVTDLDAGEYTCYAENIRGNAS 349
            +   +        +I++  + + D G Y C A N      
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH 117

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLHNSSFDLLEEEEGDALF 318
            +V   +S V      ++ ++C   G   P + W                +     D + 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
             S  IT  +VT  D GEYTC      G   GE+S+ L
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 70.8 bits (173), Expect = 3e-14
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP+            G    ++C  + G P     W  +G  +  +           +  
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163

Query: 319 EKSVSITL--FNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               S  L    VT  D+GEY C A+N  G A    +  +
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP    K   V    G +V + C + G P   + W  + + L +     +  E       
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT--- 440

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
              SI + NV   D GEY C A N  G+ +   S+ 
Sbjct: 441 ---SIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
           +   E   PP   +K   V    G + T  C+V G     I W  + + +       +  
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL 248

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            E  A      ++T+  VT  DAG+YTCYA N+ G  S    L
Sbjct: 249 VENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP        V    G  +T+ C V G PE  I W      L ++    ++ +   A   
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL- 63

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
                 +  V   D GEYTC AEN  G  +    L + E  L  + ++        LG  
Sbjct: 64  -----VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP 118

Query: 380 V---CVVS 384
           V   C ++
Sbjct: 119 VAFECRIN 126

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           +E   PP+   K   V    G  V   C + G     + W  +G++L + +         
Sbjct: 96  KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML 374
            A      ++ +        G+Y C A N  G AS    L L E  +            L
Sbjct: 156 VA------TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDL 209

Query: 375 VLGISV---CVVS 384
            LG S    C V+
Sbjct: 210 ALGESGTFKCHVT 222

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP    K E   I +   +    C + G PE  +LW  +   +  SS   +   E  A  
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA-- 347

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                + ++N++  D+G+YTC A N  G+AS   SL 
Sbjct: 348 ----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP    K S +    G  V +   + G    ++ W  +   +   S ++      +    
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN---- 532

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++        +AG+YTC  +N  G      +L
Sbjct: 533 -IATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 252 VKAQEFACPPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308
           V  +E A PP + +   +    IR+ G  + +     G P P ++W   G  L  S   +
Sbjct: 13  VTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV 72

Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                     +      +      D+GEY    +      +  I + 
Sbjct: 73  RTS-------DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 15/108 (13%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           +     P  +I         GGNV ++C   G P P + W+   + L       +     
Sbjct: 200 RVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG---- 255

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
                      L      D+  YTC A +  G       +    LP+ 
Sbjct: 256 --------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
            + Q  +  PN+ +   + + E     TM C   G+P+P I W  +   +  S+ +   +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLDLPEINLATTLSKTDS 370
           +          ++ + +  + D G+Y C A N  G   S   +L +   N+A   S    
Sbjct: 160 QLRSG------ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213

Query: 371 WYMLVLGISV---CVVS 384
            + ++ G +V   CV  
Sbjct: 214 SHEIMPGGNVNITCVAV 230

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP    +    I  +GG  +  C   GDP+P + W   G+ +++  F+ +E +E      
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA---- 61

Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISL 354
               + +  +    D   Y C A+N  G  +    L
Sbjct: 62  -GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKL 96

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 15/89 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              + ++ +      G  + + C   G P P   W  N   L + +              
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                 +  V     G Y C+  N R + 
Sbjct: 49  -KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              + ++        GG VT++C V   P P I W+ +G  L      +L          
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL---------- 59

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGN--ASGEISLDLPE 358
                 L  +   D G Y+C A +       S  +S+ + E
Sbjct: 60  -----ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 67.6 bits (165), Expect = 7e-14
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP ++  ++      G    + C++   P P  I W     VL + +      E      
Sbjct: 14  PPIISSTQTQHALH-GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 319 EKSVSITLFNVTDLD-AGEYTCYAENIRGNASGEISL 354
               ++T+ N+   D    Y C A N  G+ +  I L
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             +V ++E       G + T  C +       + W L+   LH +  + ++ + G     
Sbjct: 20  LEDVDVQE-------GSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPG----- 67

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               +TL  +   D+G     A + R +A+
Sbjct: 68  GYHVLTLRQLALKDSGTIYFEAGDQRASAA 97

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 69.8 bits (171), Expect = 7e-14
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
              +  A  P +T      + E G  V M+C   G+P P I W+ N   +  S+      
Sbjct: 102 EGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN-PRYSL 160

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
           ++G         + + N  + D G+Y C AEN  G   
Sbjct: 161 KDG--------FLQIENSREEDQGKYECVAENSMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP +  K        GG  +  C   GDP P+I+W  NG+ +  +       E+   +  
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
             +          D   Y C AEN  G+A
Sbjct: 66  LRIEPV---RAGRDDAPYECVAENGVGDA 91

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 72.3 bits (177), Expect = 9e-14
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +  I       + G     +C   G+P  T+ W+ +G+ + +S   L           
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL----------- 355

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 + +V   D G Y C+  N R +A     L
Sbjct: 356 -----RIESVKKEDKGMYQCFVRNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P    + +  +       +++ C   G P P+  W    +        +L     D + +
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL----NDRVKQ 267

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            S ++ + +    D+G+Y C   N  G  S E  L
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P    +  + +         + C   G+P P I+W+ +          L +      L 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISL 354
                   +   ++ A  Y C A N  G+  S ++ +
Sbjct: 63  FPPFRAEDYR-QEVHAQVYACLARNQFGSIISRDVHV 98

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 12/99 (12%)

Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
                      +      G +  + C +     D    + W  + +             E
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN------YFPGAE 153

Query: 314 GDALFEKSVSITLF--NVTDLDA-GEYTCYAENIRGNAS 349
            D  +    S  L    V   D    Y C  ++     +
Sbjct: 154 YDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             NV++     +   G N+T+ C V G+      W    +       + + +   D  + 
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES-GRLVEPVTDFLLDMPYH 239

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               + + +    D+G YTC       +   E ++++
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
              +V+        ++C         ++W    Q          +      L       T
Sbjct: 7   GPELVLN-VSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVL-------T 54

Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEIS 353
           L N+T LD GEY C   + RG  + E  
Sbjct: 55  LTNLTGLDTGEYFCTHNDSRGLETDERK 82

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P    +   +I   G +  + C   G+P+PT+ W++NG+ L ++  +   E  GD +  
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI-- 369

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
                   +        Y C   N  G       + + ++
Sbjct: 370 -----IFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
             G ++ + C   G P P I W   G  L +              F K++ IT  NV++ 
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN-------FNKALRIT--NVSEE 285

Query: 333 DAGEYTCYAENIRGNASGEISL 354
           D+GEY C A N  G+    IS+
Sbjct: 286 DSGEYFCLASNKMGSIRHTISV 307

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 260 PPNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP +T +     I +   N+ + C   G+P P+  W  N +  + +    +         
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
                       +   GEY C+A N  G A S  I L + + 
Sbjct: 76  VIDFRSG--GRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)

Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
            +  P    +    +  + G  +T+ C    G P P I W+ +          + +   G
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG 171

Query: 315 DALFEKSVSITLFNVTDLDA-GEYTCYAENIRGNAS 349
           D  F         NV   D   +Y+C A     +  
Sbjct: 172 DLYFS--------NVMLQDMQTDYSCNARFHFTHTI 199

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              +      +    G  V ++C V G  EP I W+ +G V+ N     +   E   +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG- 60

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISL 354
               ++L +V   DAG Y C  E+      S  + L
Sbjct: 61  ---FLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 60.2 bits (146), Expect = 9e-11
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P  T++   +         +SC   G PEP TI+W      +   +             
Sbjct: 98  VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPS--------- 148

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                  L       +  ++C A N++G AS
Sbjct: 149 ------VLNVTGVTQSTMFSCEAHNLKGLAS 173

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP + ++ S ++R  G    + C          + L  G          L  +  D  ++
Sbjct: 186 PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP---LNSDFQDNYYK 242

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINL 361
           K  +++L  V   DAG Y+C A N  G  +  ++    +    + 
Sbjct: 243 KVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 18/103 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +      ++ E G  VT+ C   G    ++ W            +            
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE-----------S 48

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
              ++T  N T  + G Y C         S  I L   D    
Sbjct: 49  PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 11/99 (11%)

Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           P +     +  +    G    + C +     + ++  +  G                   
Sbjct: 88  PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--- 144

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD 355
                   +     LD+  Y C      R + S  I L 
Sbjct: 145 -----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            PN     + +      +V   C   G P+PT  WL NG  L       +E+        
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG------- 347

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++ +  V   DAG Y C AEN  G       L
Sbjct: 348 ---TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
           P         V  E G  V + C+  G+P PTILW   +G+ +   +             
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS-------- 256

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             +  + + N    DAG Y C AEN RG    +  L
Sbjct: 257 --NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +V              V +SC V G+P+P I W LNG  +           +G     
Sbjct: 12  PSHVMFPLD----SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG----- 62

Query: 320 KSVSITLFNVT-DLDAGEYTCYAENIRGNA-SGEISLDLPEIN 360
              S+ + N     DAG Y C A N  G   S E  L    + 
Sbjct: 63  ---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE 102

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           FA   N   +    +    G  + + C       E +  W+ N    +  +   + +E G
Sbjct: 98  FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                   ++ +  V   D G YTC   N   N  
Sbjct: 158 --------NLYIAKVEKSDVGNYTCVVTNTVTNHK 184

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP      S +      ++   C V G P PT+ W+ NG V+  S +  +          
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS------ 365

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
              ++ +  V   D G Y C AEN  GNA     L +P+
Sbjct: 366 ---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                 + S VI   G +  + C V G P P+  WL   +V+   S              
Sbjct: 221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS----- 275

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++ + NVTD D+G YTC       N S    L
Sbjct: 276 ---NLLISNVTDDDSGTYTCVVTYKNENISASAEL 307

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 33/137 (24%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
            A P     +   +    G  V + C V GDP PTI W  N Q         L    GD+
Sbjct: 118 VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD--------LNPIPGDS 169

Query: 317 LFEKSVSITLF--NVTDLDAGEYTCYAENIRGN-ASGEISL---DLPEINLATTLSKTDS 370
                 S  L    +   D+G Y C A N        E  +     P ++      +  S
Sbjct: 170 RVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229

Query: 371 WYMLVLGISV---CVVS 384
             + + G      C VS
Sbjct: 230 NVIAIEGKDAVLECCVS 246

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
             +   + S  +   GGNV ++C    D   P I W  +G +L     D  ++    +L 
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
            +++  +  +    D G Y C A       SG I
Sbjct: 81  IQNILHSRHHKP--DEGLYQCEASL---GDSGSI 109

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 70.5 bits (172), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL-- 308
            ++  +   P  V+     +  + G  + + C V G       W  NG V+      L  
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259

Query: 309 ----LEEEEGDALFEKSVSITLFNVTDLD-AGEYTCYAENIRGNASGEISLDLP 357
               +E             + +  +        +TC+A+N  G  +  I L  P
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 15/87 (17%)

Query: 273 EAGGNVTMSCYVY------GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
              G+  + C          +  P + W  + + L   +      ++          + +
Sbjct: 116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---------RLIV 166

Query: 327 FNVTDLDAGEYTCYAENIRGNASGEIS 353
            NV +   G YTC+A          I+
Sbjct: 167 MNVAEKHRGNYTCHASYTYLGKQYPIT 193

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 266 KESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI 324
           ++ +++  A       C +  +    TI W  +           +  E+   + +    +
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT------PVSTEQASRIHQHKEKL 64

Query: 325 TLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                   D+G Y C   N       +IS 
Sbjct: 65  WFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 1/103 (0%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                     +  + G  + + C  V+ +    + W L  + L   ++  +     +   
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
            + +   + +V   D G YTC +      ++    ++   IN 
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 12/97 (12%)

Query: 260 PPNVTIKESM--VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
              +    S      +       S      P+    W  + +        L         
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--------- 374

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            +   SI+ F       GEY  +AEN     +   +L
Sbjct: 375 -DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 65.5 bits (159), Expect = 2e-11
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                 + + V  +   ++T+   V      + LW+     L+      L+     ++  
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM-- 105

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 +  +T+  AGEY  + ++   N +   ++
Sbjct: 106 -----VILKMTETQAGEYLLFIQSEATNYTILFTV 135

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
               T++     R+      + C     PEP + W+L      +   +     + +    
Sbjct: 140 TLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK-- 196

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                    + +L   +  C A N  G   
Sbjct: 197 --------VLHELFGTDIRCCARNELGREC 218

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P    K E +++ + G +VT+ C V G P P ++W  N + L      + +        
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS------- 360

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                + +  V + D G Y C A N  G+   E  + 
Sbjct: 361 ----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P        ++ +AG    + C    +P     +  NG+ ++ +  D +          
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN----RT 267

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               +        D G YTC  +N  G   
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P +  + + V+        + C + G+ +     W  +G+  +    +    ++  +L 
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
                         D G Y C+AE   G A S  IS     +
Sbjct: 66  -------FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL 100

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
                     K        G    + C +    P+P I W         ++     +   
Sbjct: 96  RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155

Query: 315 DALFEKSVSITLFNVTDL-DAGEYTCYAENIRGNAS 349
            A  + ++  T+    D+ D  +Y C A+N   +  
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 191

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 45  NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
              A    L+         L+L +  +     +AF+   L +LQ + +  +G+ E+  DT
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLMELP-DT 122

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNP-ITEL--------RAGQFP 150
            +    L  + L+ N +  L     + + +RL+ L +   P +TEL         +G+  
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
            L  L+++ L+   I S+    + +L  L+SL +  + L  L  ++      L+ L L G
Sbjct: 181 GLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRG 238

Query: 211 N 211
            
Sbjct: 239 C 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 18/181 (9%)

Query: 43  DANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
           D N           ++ Q+       +        +         + L++  + +   D 
Sbjct: 42  DRNRWHSAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLPQFP-DQ 99

Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
              L+ L  + +    +  L     +     L+ L L  NP+  L A     L  L+ + 
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPAS-IASLNRLRELS 156

Query: 160 LQHC-QIHSV--------HKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
           ++ C ++  +               L  L+SL L    ++ L  S+     NLK+L +  
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIRN 215

Query: 211 N 211
           +
Sbjct: 216 S 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 45  NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYL-KNSGIREV---- 96
               LP T+   + ++ L L  N +  L      SI  L  L+ + +     + E+    
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPA----SIASLNRLRELSIRACPELTELPEPL 170

Query: 97  ----HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPK 151
                    + L  L  + L    I  L     + N   LK L +  +P++ L       
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSALGPA-IHH 227

Query: 152 LPYLKTIELQHC-QIHSVHKDALIHLTALESLNL-NGNRLKHLSESVFFPTPNLKTLSLD 209
           LP L+ ++L+ C  + +           L+ L L + + L  L   +   T  L+ L L 
Sbjct: 228 LPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLR 285

Query: 210 GNP 212
           G  
Sbjct: 286 GCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 10/156 (6%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           + L    +  + L       +          +N   R                  +   +
Sbjct: 15  ENLYFQGS--TALRPY-HDVLSQWQRHYNADRN---RWHSAWRQANSNNPQIETRTGRAL 68

Query: 118 AWLHQD-TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
                            L L   P+ +     F +L +L+ + +    +  +  D +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELP-DTMQQF 126

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
             LE+L L  N L+ L  S+      L+ LS+   P
Sbjct: 127 AGLETLTLARNPLRALPASIASLN-RLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD-N 115
           Q L L    I  L      SI  L NL+ + ++NS +  +      +L  L E+DL    
Sbjct: 186 QSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCT 240

Query: 116 QIAWLHQDTFLGN-DRLKVLYL-NGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDA 172
            +         G    LK L L + + +  L      +L  L+ ++L+ C  +  +    
Sbjct: 241 ALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP-SL 296

Query: 173 LIHLTALESLNLNGNRLKHLSE 194
           +  L A   + +  +    L +
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL-LEEEEGDA 316
           A  P+   +   +      N T+ C V G P+P + W   G+ +        ++E +G  
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEINLATTLSK 367
                  + + +VTD DA  Y   A N  G+ SG  SL++    +I+L  TL  
Sbjct: 62  H-----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLL 309
           +V+       P        V    G  V++     G P+P I W     ++ N+  + ++
Sbjct: 95  EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPE 358
                 +L   +       V   DAG Y   A+N  G     + L   D+P+
Sbjct: 155 VTRSFTSLVFPN------GVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD 200

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.4 bits (157), Expect = 7e-13
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----EEGD 315
           PP +    S +I   G   T++C   G P PTI W   G+ +     D          G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISL 354
             F   + I     +  D G Y C A N  G A S + SL
Sbjct: 69  LFF---LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 66  KISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF 125
                          + L   +     I ++   T   L     + LS N I  +   + 
Sbjct: 13  IFEERKSVVATEAEKVEL---HGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISSLSG 68

Query: 126 LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
           + N  L++L L  N I ++          L+ + + + QI S+    +  L  L  L ++
Sbjct: 69  MEN--LRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMS 123

Query: 186 GNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCD 216
            N++ +  E         L+ L L GNP   +
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNP-LYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +++L L  N I  +  E   ++    L+ +++  + I  +     + L  L  + +S+N+
Sbjct: 72  LRILSLGRNLIKKI--ENLDAV-ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNK 126

Query: 117 IA-WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
           I  W   D     D+L+ L L GNP+            Y   +
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 51  STLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVE 109
             +   ++ L ++ N+I+ L     +   L+NL+ +Y+ N+ I      D    L  L +
Sbjct: 89  DAVADTLEELWISYNQIASL--SGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144

Query: 110 VDLSDNQIAWLHQDTFLGND-RLKVL-------YLNGNPITE 143
           + L+ N +   +++    ++ R++V+        L+G P+  
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P+     +    + G ++  SC   G P P + WL +GQ L + +   +          
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG------- 346

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               +    +   D+G Y C AEN  G       L
Sbjct: 347 ---ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P       +      G  VT+ C+ +G+P P I W        +               E
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL----------SSE 256

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             + I   NV   D G Y C AENI+G  + +  +
Sbjct: 257 PLLHIQ--NVDFEDEGTYECEAENIKGRDTYQGRI 289

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +    E      A   VT++C    +P  T  W +NG  L            GD +  
Sbjct: 11  PAHTLFPEG----SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS 66

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
             V          DAG Y C A N RG   S E SL    +
Sbjct: 67  NPVKAK-------DAGSYQCVATNARGTVVSREASLRFGFL 100

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           F      + +E   ++   G  V  +C      P  +  WLLN           +  +  
Sbjct: 97  FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN------FIPADGR 150

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
             + + + ++ +      D G Y+C+A +     +  +     +++LA   ++ 
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ 204

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
             +   +E       GG+V   C +    + T + W    + L NS    +  E+G A  
Sbjct: 8   IMHAVGEE-------GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA-- 58

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                + + ++T LD G Y C   N  G  S    L
Sbjct: 59  ----ILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 13/101 (12%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
           N T        +       S      P+    W  + +        L          +  
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----------DNG 377

Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
            SI+ F       GEY  +AEN     +   +L++   P++
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV 418

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.4 bits (164), Expect = 5e-12
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                 + + V  +   ++T+   V      + LW+     L+      L+         
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG------ 101

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             VS+ +  +T+  AGEY  + ++   N +   ++ +  
Sbjct: 102 -VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.4 bits (164), Expect = 5e-12
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 1/103 (0%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                     +  + G  + + C     +    + W L  + L   ++  +     +   
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
            + +   + +V   D G YTC +      ++    ++   IN 
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-----EEEGDA 316
            + I+    +         SC+  G P P+  W        N + ++ E     +     
Sbjct: 409 TLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             +   S TL     +      C A N  G +   I L+ P 
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
               T++     R+      + C     PEP + W+L      +   +            
Sbjct: 140 TLLYTLRRP-YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA--------- 189

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
             V      + +L   +  C A N  G   +   ++DL +
Sbjct: 190 -VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P + TI  S      G N+++SC+   +P     WL++G +  ++               
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-------------- 426

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               + + N+T+ ++G YTC A N     S      +
Sbjct: 427 ---ELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 68.1 bits (166), Expect = 5e-12
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 17/97 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P    I        +G N+ +SC+   +P P   W +NG    ++               
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-------------- 604

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               + +  +T  + G Y C+  N+    +  I   +
Sbjct: 605 ---VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 17/97 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P   TI        +G N+ +SC+   +P     W +NG    ++               
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------------- 248

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               + + N+T  ++G YTC A N     +      +
Sbjct: 249 ---ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P       +    E    V  +C        T LW +N Q L  S    L          
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNR----- 164

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
              ++TLFNVT  D   Y C  +N      S  + L++  
Sbjct: 165 ---TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P       +    E    V  +C        T LW +NGQ L  S    L          
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNR----- 520

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD 355
              ++TLFNVT  DA  Y C  +N      S  ++LD
Sbjct: 521 ---TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD 554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +T   S  + +    V ++C        T LW +N Q L  S    L  +       
Sbjct: 290 KPFITSNNSNPVED-EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNR----- 342

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLD 355
              ++TL +VT  D G Y C  +N    + S  + L+
Sbjct: 343 ---TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 10/97 (10%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
           +TI+ +      G  V +  +          W    +V  N            A    + 
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61

Query: 323 S----------ITLFNVTDLDAGEYTCYAENIRGNAS 349
           S          + + N+   D G YT +         
Sbjct: 62  SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE 98

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 67.8 bits (165), Expect = 1e-12
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNG-QVLHNSSFDLLEEEEGDAL 317
            P V++ E+  + + G   T+ C +         +WL    Q  H +         GD  
Sbjct: 188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFN 247

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           +E+  ++T+ +    D+G + CYA N  G+A+   +L 
Sbjct: 248 YERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 53.2 bits (127), Expect = 9e-08
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 16/132 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
           P  + +    +  +   +  + C +          +  +G+ L      +   + G    
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG---- 146

Query: 319 EKSVSITLFNVTDL-DAGEYTCYAEN-IRGNASGEISLD-LPEINLATTLSKTDSWYMLV 375
                IT+ NV          C A+       S + +L     I     +S  ++ ++L 
Sbjct: 147 -----ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK 201

Query: 376 LGISV---CVVS 384
            G +    C + 
Sbjct: 202 KGDTFTVVCTIK 213

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 17/105 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP++   +S +I EAG  ++++C         + W                         
Sbjct: 12  PPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVE-------------N 54

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATT 364
           K              G YTC   N   ++      D  ++ L   
Sbjct: 55  KKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGL 99

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 15/89 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              + ++ +      G  + + C   G P P   W  N   L + +  L           
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY---------- 167

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                 +  V     G Y C+  N R + 
Sbjct: 168 -----MVPYVDLEHQGTYWCHVYNDRDSQ 191

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 24/145 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
              +T+        AG  V + C   G P     W    + + N +              
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------- 63

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD---LPEINLATTLSKTDSWYMLV 375
            +  +    V   DAG Y C   N      S    LD   +PE    +    ++S     
Sbjct: 64  -TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSES----K 118

Query: 376 LGISVCVVSVIVSIGMSFC-VCRAH 399
           L I V   S  +  G +    C A 
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAV 143

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             +  ++    +   G  + + C +  D   +I WL +G  L  S+   +  E       
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE------- 54

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               + + +    D+G Y C   +  G+ +   S+
Sbjct: 55  ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 9/98 (9%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                        +E G +  + C V     PTI+W   G+ +             + L 
Sbjct: 100 KLMFKNAPTPQEFKE-GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL- 157

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                  +  +   D G Y C    +         + +
Sbjct: 158 ------QIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDAL 317
              V I  S      G +    C V GD  +  I W   NG+ L  +   +      D  
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD-- 59

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              S ++T++N    DAG Y C      G  S
Sbjct: 60  --DSSTLTIYNANIDDAGIYKCVVTAEDGTQS 89

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
           PP +T+  + ++R  G    + C          ++L  N   L                +
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNR----Y 241

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           +K +++ L  V    AG Y+C A N++G  S  +   
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 15/95 (15%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +      ++ + G  VT+ C   G    ++ W            D            
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSD-----------G 48

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            S  ++  N T  + G Y C         S  I L
Sbjct: 49  SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHL 83

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 15/132 (11%)

Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           P       +  +      +  + C +     E  +  +           +          
Sbjct: 88  PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH--- 144

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD-LPEINLATTLSKTDSWYMLV 375
                  T+     + + +Y C A    R   S  I L     I     L+   +  + +
Sbjct: 145 -----GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199

Query: 376 LGISV---CVVS 384
            G +    C  S
Sbjct: 200 RGEAAQIVCSAS 211

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS------FDLLEEEE 313
            P++T  +    +  G +  M C   G P P  +W      +          F ++ +E 
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              L   ++ IT       D GEY C A N  G+AS    L
Sbjct: 152 YTELNIVNLQIT------EDPGEYECNATNSIGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 17/105 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDAL 317
            P +   E ++IR++   VT+ C +           W  NG  L  +  +          
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--------- 53

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
              ++   +      D+GEY C    +        ++++   P+I
Sbjct: 54  --SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDI 95

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----EEGD 315
           PP +    S +I   G   T++C   G P PTI W   G+ +     D          G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
             F   + I     +  D G Y C A N  G A
Sbjct: 69  LFF---LRIVHGRKSRPDEGVYVCVARNYLGEA 98

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL 309
           D   +      +     S V+   G    M C    G PEPTI W  +G  L +    + 
Sbjct: 102 DASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
               G  L        +      DAG+Y C   N+ G  
Sbjct: 162 IR--GGKL-------MITYTRKSDAGKYVCVGTNMVGER 191

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 260 PPNVTIKE-SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           P  VT++E        G +VT  C      P  T++W         S       +    L
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA----MDFNGIL 64

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                  T+ NV   DAG Y C   N+     G  +L
Sbjct: 65  -------TIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 65.3 bits (158), Expect = 5e-12
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE--------- 310
                    +V  + G ++TM+C         + W        N      +         
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 311 ------EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 E  G A F  + ++ +      DAG   C     +G    + S 
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQVLHNSSF----------- 306
             V    + V   AGG V + C          P I WL       ++             
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 307 ------DLLEEEEGDALFEKSV------SITLFNVTDLDAGEYTCYAEN 343
                 D  +E  GD L   SV      ++ L +V   D G Y C    
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
             +  ++        G    + C    G PEPT++W+ +G  L +             + 
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
           +   ++ + NV  +D G Y C A+N+ G  
Sbjct: 168 DGG-NLLISNVEPIDEGNYKCIAQNLVGTR 196

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLLEEEEGDAL 317
            P +    + ++ +     T++C V G PEPTI W  +G+ +  +      ++ ++G   
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
           F +++        + D GEY C A+N  G A
Sbjct: 69  FYRTMQ----GKKEQDGGEYWCVAKNRVGQA 95

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.6 bits (162), Expect = 9e-12
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 6/103 (5%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE------EEEGD 315
            V  K  ++  +   N  + C   G PEPTI W          S  +L          G 
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
              +  V  ++ +      G   C A N  G  S   +     
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P V++ ++  +   G   T++C +          W                   GD  +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT-KLQEKYNSWHHGDFNY 269

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINLATTLSKTDSWYMLV 375
           E+  ++T+ +    D+G + CYA N  G+A+   +L   D   IN+   ++ T     + 
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTT---VFVN 326

Query: 376 LGISV---CVVS 384
            G +V       
Sbjct: 327 DGENVDLIVEYE 338

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 260 PPNVTI---KESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGD 315
              + I     + V    G NV +       P+P    W+   +   +   D  + E   
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
            +   S  + L  +   + G YT    N   NA+   ++ +   PEI
Sbjct: 370 NIRYVS-ELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI 415

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 18/100 (18%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP++   +S +I   G  + + C         + W        N +              
Sbjct: 36  PPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEILDETNEN-------------- 77

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
           K            + G+YTC  ++   N+      D  ++
Sbjct: 78  KQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKL 117

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 14/131 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P  + + +  +  +   +  + C +  DPE T   L   Q            ++   + +
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQ-------GKPLPKDLRFIPD 165

Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGN-ASGEISLD-LPEINLATTLSKTDSWYMLVL 376
               I + +V          C  +    +  S +  L   P       +S + + Y+L  
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225

Query: 377 GISV---CVVS 384
           G      C + 
Sbjct: 226 GEEFTVTCTIK 236

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 63.9 bits (155), Expect = 9e-12
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P+ T        E G +  + C    G       W          +  L E        
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP---- 176

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
                I++ N +   +G Y+C  +N  G+    + LD+  
Sbjct: 177 ----VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 53/214 (24%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPT----ILWLLNGQVLHNSS------------ 305
           ++T  E  + +  G    + C     PE      I WL++                    
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 306 FDLLEEEEGDALF------EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
            +   + +G   F          SI + N+   D G Y C  +   G A+ +  L     
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT---- 117

Query: 360 NLATTLSKTDSWYMLVLG---ISVCVVSVIVSIGMSFCV-CRAHEHKNK-----RRKRKG 410
                          VL     + C V     IG  F + C   E         ++    
Sbjct: 118 ---------------VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS 162

Query: 411 KMKQSVSFNDQEKKLLDVSITTTDRHTG--SCEA 442
           +   +    +    ++ V    +  ++G  SC  
Sbjct: 163 QTMPTPWLAEMTSPVISVK-NASSEYSGTYSCTV 195

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 261 PNVTIKESMVIR-EAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSF--DLLEEEEGD 315
            +V +  S  I    G  + ++C    +    I   W        +       L+ + G 
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINLAT 363
            + +   ++T+  VT  D G YTC A +          +   + P +   +
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
           E A P  V ++   ++   G  + + C +  D   +I WL +G  L  S+   +  E   
Sbjct: 5   EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--- 60

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                   + + +    D+G Y C   +  G+ +   S++
Sbjct: 61  -------EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 257 FAC----PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFD--L 308
           F C     P +T++        G +V+ +C      +   T  W  + + L ++  +   
Sbjct: 3   FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62

Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
               +G  L E +  + L NV     G Y C   N  G++
Sbjct: 63  HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 16/121 (13%)

Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTIL 293
                +    Q + W   +   F    +  +           NV + C V     E  I+
Sbjct: 203 FKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG-------ECNVLLKCKVANIKKETHIV 255

Query: 294 WLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
           W  + + +        ++           ++ +   +  DAG Y    ++ RG     + 
Sbjct: 256 WYKDEREISVDEKHDFKDGIC--------TLLITEFSKKDAGIYEVILKDDRGKDKSRLK 307

Query: 354 L 354
           L
Sbjct: 308 L 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
              V  + ++ I E G                + ++ N + +     + +  +       
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT---- 163

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
              + + +  + D D G YT   ++ +      + L     
Sbjct: 164 -GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 38/265 (14%), Positives = 72/265 (27%), Gaps = 50/265 (18%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P        V  +   ++   C     P+    W  +     +S   L  E +G+    
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSP-RLEVESKGN---- 56

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
               +T  ++   D G Y+C   +  G AS   S  + E  L   L+ +       + + 
Sbjct: 57  -KTKMTFKDLGMDDLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTVPVK 112

Query: 380 VCVVSVIVSIGMSFCVCRAHE----------HKNKRRKRKGKMKQSVSFNDQEKKLLDVS 429
             +   I+  G      +A +             K      K K  +  N    ++    
Sbjct: 113 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 172

Query: 430 ITTTDRHTG--SCEA---LGS---------------QPDMELIEQSLAMEQPPVHITIES 469
           +   D   G  + +      +               Q + E   Q    +Q P  +   S
Sbjct: 173 LQDED--EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 230

Query: 470 HAVDP--------QVSVFPPPPEFS 486
             V          +V+         
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIV 255

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           +VLYL  N IT+L  G F +L  L  ++L + Q+  +       LT L  L+LN N+LK 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
           +    F    +L  + L  NPW C C  +     W+
Sbjct: 93  IPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C       +  C   +  ++P+ + +  QVL L +N+I+ L    F    L  L
Sbjct: 3   CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQL 56

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL---YLNGNP 140
            R+ L N+ +  +    F  LT L ++ L+DNQ+  + +  F   D LK L   +L  NP
Sbjct: 57  TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF---DNLKSLTHIWLLNNP 113

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
            +T      + + G ++T++        P++               L             
Sbjct: 100 GLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL------------- 145

Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++  +   D+G +TC     +     +I +
Sbjct: 146 ---SVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL-----------HNSSFDLLEEEE 313
           +K+ ++ ++ G  V ++C           W  + Q+              S  +   +  
Sbjct: 1   MKKVVLGKK-GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSR 59

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346
                + +  + + N+   D+  Y C  E+ + 
Sbjct: 60  RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 92

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 59.2 bits (143), Expect = 4e-11
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSFD---LLEEEE 313
           P +  +         GG++T S  V G      P + W     V  +S       L +  
Sbjct: 11  PQDGEVTV-------GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             A       + + +      G Y C             +L + E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 258 ACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
                V      + +   G        +  +P+    W L GQ L  S  D    E+G  
Sbjct: 3   MALIEVEKPLYGVEVFV-GETAHFEIEL-SEPDVHGQWKLKGQPLAASP-DCEIIEDG-- 57

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
              K   + L N      GE +  A N +  A
Sbjct: 58  ---KKHILILHNCQLGMTGEVSFQAANTKSAA 86

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE---EEGDALFE 319
           VT  + +   + G +V++ C         +  +        +   L  E      + L  
Sbjct: 5   VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
                 + +V   D+G+Y C            +++ +  
Sbjct: 65  GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA 103

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 31/183 (16%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGL----------LNLQRIYLKNSGIREVHRDTFKYLTI 106
           ++ L L +  +   T +  + +            L L    L + G+ E+        + 
Sbjct: 201 LEALKLESCGV---TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 107 LVEVDLSDNQI---AWLHQDTFLG-NDRLKVLYLNGNPITE-----LRAGQFPKLPYLKT 157
           L  + + +  I           L   + LK L L GN + +     L          L++
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 158 IELQHCQIHSVH----KDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSL 208
           + ++ C   +         L     L  L ++ NRL     + L + +  P   L+ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 209 DGN 211
              
Sbjct: 378 ADC 380

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 57  IQVLDLNNNKISYLTKEAF-------KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
           ++ L L    +S  + E              L +    +  +G+R + +        L  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 110 VDLSDNQI---AWLHQDTFLG-NDRLKVLYLNGNPIT-----ELRAGQFPKLPYLKTIEL 160
           + L    +           +     L+ L L  N +      EL  G       L+T+ +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 161 QHCQIHSVHK----DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
             C I +         L    +L+ L+L GN L     + L E++  P   L++L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 47/177 (26%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVH----RDTFKYLTILV 108
            DIQ LD+   ++S      +  +   L   Q + L + G+ E          +    L 
Sbjct: 3   LDIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 109 EVDLSDNQIAWLHQDTFL---------GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
           E++L  N++     D  +          + +++ L L    +T                 
Sbjct: 60  ELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---------------- 99

Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
              C + S     L  L  L+ L+L+ N L     + L E +  P   L+ L L+  
Sbjct: 100 -AGCGVLS---STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 37/192 (19%)

Query: 57  IQVLDLNNNKIS-----YLTK--EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
           ++ L +    I+      L +   A +S+  L+L    L + G R +     +    L  
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 110 VDLSDNQIAWLHQDTFLG----------NDRLKVLYLNGNPIT-----ELRAGQFPKLPY 154
           + +           T             N  L  L ++ N +      EL  G       
Sbjct: 318 LWVKSCSF------TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 155 LKTIELQHCQIHSV----HKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKT 205
           L+ + L  C +           L+   +L  L+L+ N L       L ESV  P   L+ 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431

Query: 206 LSLDGNPWCCDC 217
           L L    W  + 
Sbjct: 432 LVLYDIYWSEEM 443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 53/182 (29%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSI--GL----LNLQRIYLKNSGIREVH----RDTFKYL 104
             +  L+L +N++          +  GL      +Q++ L+N  +          T + L
Sbjct: 56  PALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112

Query: 105 TILVEVDLSDNQI----------AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
             L E+ LSDN +            L         RL+ L L    ++            
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQC-----RLEKLQLEYCSLSAASCEPLAS--- 164

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLD 209
                             L      + L ++ N +     + L + +      L+ L L+
Sbjct: 165 -----------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 210 GN 211
             
Sbjct: 208 SC 209

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 26/101 (25%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
            E  CP N T  E           T  C  +G+P P +  L +G                
Sbjct: 187 DERDCPGNWTWPE-------NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------- 230

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                         VT    G Y C A + +G  + E++++
Sbjct: 231 ----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           PP +     +   E     T+ C + G     E  +   L  Q L+ +          D+
Sbjct: 6   PPQLVSPRVL---EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDS 57

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
               + +       D      TC       +     ++ +
Sbjct: 58  FS--AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 258 ACPPNVTIKESM--VIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
               +V I + +  +    G + +  C + +       +W + G+ + +SS       +G
Sbjct: 4   GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQG 62

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                +   + +      DAGE       +   AS
Sbjct: 63  -----RKYILVVREAAPSDAGEVVFSVRGLTSKAS 92

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
           + L+LN N IT+L  G F  L  L+ +     ++ ++       LT L  L+LN N LK 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLK 228
           +    F    +L  + L  NPW C+C  +   RNW+  
Sbjct: 96  IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD 133

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 12/120 (10%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C C     +    C++    ++P+ + +D Q L LNNN+I+ L    F    L+NL
Sbjct: 6   CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNL 59

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL---YLNGNP 140
           Q++Y  ++ +  +    F  LT L ++DL+DN +  + +  F   D LK L   YL  NP
Sbjct: 60  QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF---DNLKSLTHIYLYNNP 116

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P   + +       G  + ++  +  D +  + WL NGQ +  S    + E  G     
Sbjct: 23  EPAYQVSK-------GHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA---- 70

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              ++T+   +  D   Y C     + +  
Sbjct: 71  -KRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
            ++ I E G                + ++ N + +       +  +    +    + + +
Sbjct: 10  LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFM 65

Query: 327 FNVTDLDAGEYTCYAENIRGNAS 349
             + D D G YT   ++ +    
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNH 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P+     S  +     NV + C V     E  I+W  + + +     +  + ++G    
Sbjct: 117 GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDGI--- 170

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               ++ +   +  DAG Y    ++ RG     + L
Sbjct: 171 ---CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 17/89 (19%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
            I     N T++C V    +P +    +G+ L  S                   +     
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ-----------------RVITHKW 152

Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
           T   + ++ C A N     S    +  PE
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCPE 181

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 265 IKESMVIREA-GGNVTMSC--YVYGDPEPTILWLLNG---QVLHNSSFDLLEEEEGDALF 318
           I  ++    A G ++ +    +   D    I W       ++          +E+     
Sbjct: 3   ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
            K+ ++ + ++   D   Y     + +G    E   DL
Sbjct: 63  FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL 100

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             ++T+K               C V  D + T  W  NG  +  S   +     G     
Sbjct: 15  IADLTVKA-------AEQAVFKCEV-SDEKVTGKWYKNGVEVRPSK-RITISHVGR---- 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
               + + +V   D G+YT   +    + S +++    ++
Sbjct: 62  -FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKV 100

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 60.7 bits (147), Expect = 9e-11
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                     +    G   T+ C +      P + WL +GQ+L  +     +   G+   
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 319 EKSVSIT---LFNVTDLDAGEYTCYAENIRGNA 348
           +  + ++   + ++   D G+Y C         
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 58.4 bits (141), Expect = 6e-10
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 14/91 (15%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P    +       A     +SC   G PEP  +LWL +   L  +              
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG---------- 155

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               S+ +  +       ++C A N +G  +
Sbjct: 156 -PQRSLHVPGLN--KTSSFSCEAHNAKGVTT 183

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 37/191 (19%)

Query: 57  IQVLDLNNNKIS---------YLTKEAFKSIGLLN--LQRIYLKNSGIREVH----RDTF 101
           ++ L L+NN +           L + A          L+ I    + +          TF
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 102 KYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPK 151
           +   +L  V +  N I       L  +       LKVL L  N  T      L A     
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALKS 242

Query: 152 LPYLKTIELQHCQIHSVHKDAL------IHLTALESLNLNGNRL-----KHLSESVFFPT 200
            P L+ + L  C + +    A+      +    L++L L  N +     + L   +    
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 201 PNLKTLSLDGN 211
           P+L  L L+GN
Sbjct: 303 PDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 44/198 (22%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLL-----NLQRIYLKNSGIREVHRDT--------- 100
             ++ + L+ N I     EA + +        +L+     +     V  +          
Sbjct: 32  DSVKEIVLSGNTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 101 -FKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE------------ 143
                  L  V LSDN           D    +  L+ LYL+ N +              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 144 -LRAGQFPKLPYLKTIELQHCQIH--SVHK--DALIHLTALESLNLNGNRL-----KHLS 193
                +    P L++I     ++   S+ +          L ++ +  N +     +HL 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 194 ESVFFPTPNLKTLSLDGN 211
                    LK L L  N
Sbjct: 209 LEGLAYCQELKVLDLQDN 226

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 36/180 (20%)

Query: 38  SALCKDANFTALPSTLDSDIQVLDLNNNKI-----SYLTKEAFKSIGLLNLQRIYLKNSG 92
            AL + A      +     ++ +    N++          + F+S     L  + +  +G
Sbjct: 144 RALQELAVNKKAKNA--PPLRSIICGRNRLENGSMKEWA-KTFQSHR--LLHTVKMVQNG 198

Query: 93  IR-----EVHRDTFKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE 143
           IR      +  +   Y   L  +DL DN      +            L+ L LN   ++ 
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 144 ---------LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-----HLTALESLNLNGNRL 189
                        +   L   +T+ LQ+ +I       L       +  L  L LNGNR 
Sbjct: 259 RGAAAVVDAFSKLENIGL---QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 107 LVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQF----PKLPYLKTI 158
           +    L  + I            L +D +K + L+GN I    A            L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 159 ELQHCQIHSVHK----------DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNL 203
           E        V             AL+    L ++ L+ N       + L + +   T  L
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PL 124

Query: 204 KTLSLDGN 211
           + L L  N
Sbjct: 125 EHLYLHNN 132

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 30/200 (15%), Positives = 54/200 (27%), Gaps = 64/200 (32%)

Query: 44  ANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-----NLQRIYLKNSGIREVH- 97
           A F+         I+   L  + I   T E  KS+  +     +++ I L  + I     
Sbjct: 2   ARFS---------IEGKSLKLDAI---TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA 49

Query: 98  ---RDTFKYLTILVEVDLSDNQIAWLHQDTFLG----------NDRLKVLYLNGNPITEL 144
               +       L   + SD     +  +                +L  + L+ N     
Sbjct: 50  RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109

Query: 145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFP 199
                                     D L   T LE L L+ N L       ++ ++   
Sbjct: 110 AQEPL--------------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 200 T--------PNLKTLSLDGN 211
                    P L+++    N
Sbjct: 150 AVNKKAKNAPPLRSIICGRN 169

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSF--DLLEEEEG 314
             +V +  S  I    G  + ++C    +        W        +       L+ + G
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             + +   ++T+  VT  D G YTC A +          +
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P N   +  +V+        ++C   G P+  ++W  +   + +        +  + LF 
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF- 174

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT 363
            +V+ TL  +       + C    +    +    L +PE+ LA 
Sbjct: 175 -NVTSTL-RINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAH 216

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 49/236 (20%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNGQVLHN--SSFDLLEEE--- 312
           VT+ + + + E G N+T+ C    +         + W +  + +       + L+ +   
Sbjct: 4   VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63

Query: 313 -------EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTL 365
                    D L   + ++ + +V   DAG Y C   +  G     I++ +         
Sbjct: 64  YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYN---- 118

Query: 366 SKTDSWYMLVLGISVCVVSVIVSIGMSFCV-CRAH---EHKNKRRKRKGKM---KQSVSF 418
                            + V+  +     + C+A    + +        ++   K + + 
Sbjct: 119 ------------KINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN 166

Query: 419 NDQEKKLLDVS----ITTTDRHTGSCEA---LGSQP-DMELIEQSLAMEQPPVHIT 466
           + +E+KL +V+    I TT      C        +    EL+   L +  PP   T
Sbjct: 167 SKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL---HNSSFDLLEEEEGDA 316
           P  +++            +T++C V   P P + WL+   V      ++  +++E++G  
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG-- 161

Query: 317 LFEKSVSITLF-NVTDLDAGEYTCYAENIRGNASG 350
               S+S+ +  ++        TC  +N +  A G
Sbjct: 162 ----SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 14/95 (14%)

Query: 274 AGGNVTMSCY---VYGDPEPTILWLLNG----QVLHNS-SFDLLEEEEGDALFEK----- 320
            G  VT++ Y   V   PE  + W   G    QVL      D++  E     F       
Sbjct: 5   LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64

Query: 321 -SVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            +  + +        G Y C  +      + +  L
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDL 308
           +K ++    P +      +    G  +T+ C V    G P  T+LW         S++  
Sbjct: 218 IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277

Query: 309 LEEEEG-------DALFEKSVSITLFNVTDLDAG-EYTCYAENIRGNASGEISL 354
               EG       +      V +    VT  D   ++ C   N     +   ++
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 252 VKAQEFACPPNVTIKESMVIREAG--GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
           V     A  P ++  + + +  +G      +S +     +  I W  +  +L   +   L
Sbjct: 115 VFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL 174

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                  L        + +V   DAG Y C            I+  
Sbjct: 175 SVRGTTHL-------LVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 20/102 (19%)

Query: 260 PPNVTIKESMVIREAGGNVTMSC-------YVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
                  E       G  V + C       +    P   + W  N              E
Sbjct: 25  YKREFRLE-------GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG------E 71

Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           E   ++ +  ++ L      D+G Y C   N        I L
Sbjct: 72  EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQV-LHNSSFDLLEEEEGD 315
           P   T+K        G ++T    V  +    +PTI W     + L + +   L+ +E  
Sbjct: 14  PQGGTVKV-------GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 316 ALFEKSVSITL--FNVTDLDAGEYTCYAENIRGNASGEISLD 355
               +  +  +      D  AG Y C         S    L+
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 15/98 (15%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             + T+         G  + + C +  +      W  NG  +  S   L   ++G     
Sbjct: 14  LTDQTVNL-------GKEICLKCEISENIPGK--WTKNGLPVQESD-RLKVVQKG----- 58

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357
           +   + + N    D G+Y    +        ++ +   
Sbjct: 59  RIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISG 96

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 253 KAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
              +         +    +  +G  V ++C  Y  P   ILW  N + +     D     
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS 163

Query: 313 EGDALFEKSVSITLFNVTDL-DAGEYTCYAENIRGNAS 349
           + D L       +L   ++L  +G Y CY    +   +
Sbjct: 164 DEDHL-------SLKEFSELEQSGYYVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 16/79 (20%)

Query: 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF 327
            +   +  G+V ++C         I W  +G+++   +             E      L 
Sbjct: 11  KVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT-------------EDKKKWNLG 54

Query: 328 NVTDLDAGEYTCYAENIRG 346
           +      G Y C     + 
Sbjct: 55  SNAKDPRGMYQCKGSQNKS 73

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE---EEEGD 315
           P  +    E   +   G  V M+  V  +    ++W+ NG  L            +++G 
Sbjct: 8   PVLIVTPLEDQQVFV-GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                   +   +V   D G Y       +  A
Sbjct: 66  -----RHILIFSDVVQEDRGRYQVITNGGQCEA 93

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 60.1 bits (145), Expect = 5e-10
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 14/100 (14%)

Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGD 315
           +    +++  ++          T++C    +PEPT   W      L           +G 
Sbjct: 215 YPPEVSISGYDNNWYLG-QNEATLTCDARSNPEPTGYNWSTTMGPLPPF-----AVAQGA 268

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            L        +  V         C   N  G    E+++ 
Sbjct: 269 QL-------LIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P  T +   V           C    G P   I W  +   + N+S             
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ---VPGFLSGTV 173

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
             +    L   + +D    TC  E+        ++++L
Sbjct: 174 TVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 25/114 (21%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-----ILWLLNGQVLHNSSFDLLEEEE- 313
           P  V           G +VT+ CY+            + W  +G+    + F   +    
Sbjct: 7   PTQVPGFL-------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY 59

Query: 314 -----------GDALFEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD 355
                            ++ S+ +F +   D G YTC      +G+ S +I L 
Sbjct: 60  SESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 60.6 bits (146), Expect = 5e-10
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
            +T      + + G ++T++        P++               L             
Sbjct: 99  GLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL------------- 144

Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              ++  +   D+G +TC     +     +I +
Sbjct: 145 ---SVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK--------- 320
           V+ + G  V ++C           W  + Q+    +      +    L ++         
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 321 --SVSITLFNVTDLDAGEYTCYAEN 343
             +  + + N+   D+  Y C  E+
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVED 88

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 20/90 (22%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTIL--WLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF 327
           V+R       ++C V+G   P ++    L  +    S                       
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK-----------------REKAV 333

Query: 328 NVTDLDAGEYTCYAENIRGNASGEISLDLP 357
            V + +AG + C   +  G    E ++ + 
Sbjct: 334 WVLNPEAGMWQCLLSD-SGQVLLESNIKVL 362

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 258 ACPPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
           + P ++   +  V         V ++C +    +    W  +GQ +  S   L+ + +G 
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESE-LLVVKMDG- 62

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               +   + L      D+GE+ C  E +     
Sbjct: 63  ----RKHRLILPEAKVQDSGEFECRTEGVSAFFG 92

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P   + +       GG V     +  DP+  + W  NGQ +  S+   + E +G     
Sbjct: 15  DPAYQVDK-------GGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-KYIFEHKGC---- 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               + + N    D  EY   A + + +  
Sbjct: 62  -QRILFINNCQMTDDSEYYVTAGDEKCSTE 90

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
            D         P   +K        G +    C V     P + W  + + L  S   + 
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK 531

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                D        +T+  V   D GEYT  A+N  G   
Sbjct: 532 RYNGNDY------GLTINRVKGDDKGEYTVRAKNSYGTKE 565

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 260 PPNVTIK--ESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDA 316
            P VTI+  +     +   +V ++C    +P  T   W      L         E +   
Sbjct: 231 EPEVTIEGFDGNWYLQ-RMDVKLTCKADANPPATEYHWTTLNGSLPKGV-----EAQNRT 284

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           LF          +    AG Y C A N  G  SG++ ++
Sbjct: 285 LF------FKGPINYSLAGTYICEATNPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 9/101 (8%)

Query: 260 PPNVTIKESMVIR----EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           P N       V+R    +    +  +C    G P   + W    +          E    
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ----EIRNP 186

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           +          L    +       C            ++L+
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
           P  +    E   +   G +V + C +     P + WL + + +  S  +D++ E     L
Sbjct: 8   PAAIIKPLEDQWVAP-GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                   +   +  DAGEYTC  E  +  AS
Sbjct: 66  -------VIRGASLKDAGEYTCEVEASKSTAS 90

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP+   +   +       + + C + Y      I W  N Q L        +  +     
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----- 182

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               ++ + N    D+G Y CY          +I +
Sbjct: 183 ----NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.8 bits (136), Expect = 7e-09
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 6/100 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNGQVLHNSSFDLLEEEEGD 315
                I +  +    G    ++C             I W      +    F +       
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSS 287

Query: 316 ALFEKSVSITLFNVTDLDAGE-YTCYAENIRGNASGEISL 354
               ++ ++   NVT+   G  YTC   N   + +   ++
Sbjct: 288 GGITEA-TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                    +     G + T+SC V    +  + W  +G+ L +SS  +  E  G     
Sbjct: 12  AKEQPAHREVQAEA-GASATLSCEV-AQAQTEVTWYKDGKKLSSSS-KVRVEAVGC---- 64

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
            +  + +      +AGEY+C A   + +  
Sbjct: 65  -TRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 54/226 (23%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP V++ +          VT+ C V   P   +  W LNG     S+             
Sbjct: 8   PPWVSVFQ-------EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY---------- 50

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
                  + + +  D+GEY C         S  I L++    L   +S            
Sbjct: 51  ------RITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSR---------- 92

Query: 379 SVCVVSVIVSIGMSFCV-CRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHT 437
                  + + G    + C A + K        +  ++  F      L  +    +   T
Sbjct: 93  -------VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGT 145

Query: 438 GSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPP 483
             C  +G                  + +T++     P ++     P
Sbjct: 146 YHCSGMGKHR----------YTSAGISVTVKELFPAPVLNASVTSP 181

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 20/100 (20%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-----NGQVLHNSSFDLL 309
           +E    P +    +  + E G  VT+SC      +   L L        + L   +    
Sbjct: 166 KELFPAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN---- 220

Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                      S    +      D+G Y C A    GN  
Sbjct: 221 ----------TSSEYQILTARREDSGLYWCEAATEDGNVL 250

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-SFDLLEEEEGDALFEKSVSIT 325
           E       G  V + C V  + +  + W  NG+ +            EG     K   + 
Sbjct: 15  EDTTAYC-GERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILI 67

Query: 326 LFNVTDLDAGEYTCYAENIRGNAS 349
           +   T  DA EY+      + +A 
Sbjct: 68  IEGATKADAAEYSVMTTGGQSSAK 91

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 252 VKAQEFACPPNVTIKESMVIREA--GGNVTMSCYVY----GDPEPTILWLLNGQVLHNSS 305
           V + + A PP +      V+ E   G  + + C VY     D    + W ++G+   + +
Sbjct: 216 VGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDIT 275

Query: 306 FDLLEEEEGDALFEK----SVSITLFNVTDLD-AGEYTCYAENIRGNASGEISL 354
            D+   E       +    +  +++  VT  D    Y C+A + +G  +    +
Sbjct: 276 IDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 28/248 (11%), Positives = 56/248 (22%), Gaps = 28/248 (11%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
              +  +         T++W    Q             E     EK   +        D 
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD-VLWFRPTLLNDT 91

Query: 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFC 394
           G YTC   N    +     L          + + DS +   + + V  + +   I    C
Sbjct: 92  GNYTCMLRNTTYCSKVAFPL---------EVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142

Query: 395 ---VCRAHEHKNKR---RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448
                                 K++   +   +   L  +    ++    +C        
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVV------ 196

Query: 449 MELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNH--LPTSTYGNIFISVSVSQ 506
                         +  T+    V    +  PP     ++H          + I  +V  
Sbjct: 197 ----TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252

Query: 507 EPPGSDPP 514
                   
Sbjct: 253 SFLMDSRN 260

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 26/97 (26%)

Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           CP N T  E           T  C  +G+P P +  L +G                    
Sbjct: 376 CPGNWTWPE-------NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------- 415

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                     VT    G Y C A + +G  + E++++
Sbjct: 416 ------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 36/236 (15%), Positives = 67/236 (28%), Gaps = 21/236 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +      +  G N+T+ C V G       T++ L   + L          E    
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVL 376
                V+ T+    D     ++C  E        E+  +        T     +   LV 
Sbjct: 142 -----VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS 196

Query: 377 GISVCV---VSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT 433
              + V    +V+ S+   F V  A  H     +R        + +   K  + V+    
Sbjct: 197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 256

Query: 434 DRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDP------QVSVFPPPP 483
                +C  +      E ++       P  ++ +    V        +    P   
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK 312

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 22/91 (24%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            PNV + +  V    G  VT+ C  +   + T+  +    +   +               
Sbjct: 285 APNVILTKPEV--SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQL------------- 329

Query: 320 KSVSITLFNVTDLDAG-EYTCYAENIRGNAS 349
                 L   T  D G  ++C A        
Sbjct: 330 ------LLKATPEDNGRSFSCSATLEVAGQL 354

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 55.5 bits (133), Expect = 5e-09
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
            P           EAG  +T+ C V          I  L    ++ +  F  LE+ +  +
Sbjct: 91  FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF--LEDADRKS 148

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351
           L  KS+ +T   V +       C A+         
Sbjct: 149 LETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 40/191 (20%)

Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
           ES  + + G +V+++C   G   P   W        N                 + ++T+
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT---------NEGTTSTLTM 58

Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI 386
             V+  +   Y C A          I +++        +                 +S  
Sbjct: 59  NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIH----------------LSGP 102

Query: 387 VSIGMSFCV-CRAHE-----------HKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTD 434
           +  G    V C   +            K     +  +  +       E K L+V+ T   
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162

Query: 435 RHTG---SCEA 442
              G    C A
Sbjct: 163 EDIGKVLVCRA 173

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
           P   T   ++    E G   T+ C +       + W    + L +   + L ++      
Sbjct: 8   PARFTQDLKTKEASE-GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDG----- 59

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                 + + +++  DAGEY+C     R +A+
Sbjct: 60  --TRCELQIHDLSVADAGEYSCMCGQERTSAT 89

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
                ++ +    +   +VT++C    D    I WL N Q L  +    L +        
Sbjct: 110 VTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS----- 163

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD 355
               + +  +   DAGEY C   N      S  I LD
Sbjct: 164 ---ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
               T +  ++ + E  G    +C     P  T+ W      L  S       +EG    
Sbjct: 8   ANCFTEELTNLQVEE-KGTAVFTCKT-EHPAATVTWRKGLLELRASG-KHQPSQEGL--- 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
             ++ +T+  +   D+  YTC     +  A 
Sbjct: 62  --TLRLTISALEKADSDTYTCDIGQAQSRAQ 90

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.5 bits (126), Expect = 9e-09
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
              V ++C +   P   + W  +G+ +  S   LL ++E          + L  V   D+
Sbjct: 28  LERVVLTCEL-CRPWAEVRWTKDGEEVVESP-ALLLQKEDT-----VRRLVLPAVQLEDS 80

Query: 335 GEYTCYAENIRGNAS 349
           GEY C  ++   + +
Sbjct: 81  GEYLCEIDDESASFT 95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIREVHRDTFKYLTILVEVD 111
           S ++ L++++N +     +    + L +L+ + L     SG   V          L  + 
Sbjct: 126 SGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 112 LSDNQIAWLHQDTF-LGN-DRLKVLYLNGNPITELRAGQFP---KLPYLKTIELQHCQIH 166
           +S N+I         +     L+ L ++ N  +       P       L+ +++   ++ 
Sbjct: 185 ISGNKI----SGDVDVSRCVNLEFLDVSSNNFS----TGIPFLGDCSALQHLDISGNKLS 236

Query: 167 SVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
                A+   T L+ LN++ N+    +         +L+ LSL  N
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 32/170 (18%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREV--HRDTFKYLTILVEVDLSD 114
           + L L+N+ I+     +        +L  + L  + +        +    + L  +++S 
Sbjct: 80  ESLFLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 115 NQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFP-------KLPYLKTIELQHCQIH 166
           N + +  + +     + L+VL L+ N I+    G              LK + +   +I 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSIS----GANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 167 SVHKDALI---HLTALESLNLNGNRLKHLSESV--FFPTPNLKTLSLDGN 211
                  +       LE L+++ N   + S  +        L+ L + GN
Sbjct: 192 GD-----VDVSRCVNLEFLDVSSN---NFSTGIPFLGDCSALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP------KLPYLKT 157
           LT L  + LS++ I       F  +  L  L L+ N ++    G             LK 
Sbjct: 76  LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS----GPVTTLTSLGSCSGLKF 130

Query: 158 IELQHCQIH-SVHKDALIHLTALESLNLNGNRL-KHLSESVFFPT--PNLKTLSLDGN 211
           + +    +         + L +LE L+L+ N +                LK L++ GN
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 36/177 (20%)

Query: 53  LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIREVHRDTFKYLTILVE 109
           L + +  LDL++N  S              LQ +YL+N   +G  ++   T    + LV 
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIP-PTLSNCSELVS 422

Query: 110 VDLSDNQIAWLHQDT-----FLGN-DRLKVLYLNGNPITELRAGQFP----KLPYLKTIE 159
           + LS N +      +      LG+  +L+ L L  N +     G+ P     +  L+T+ 
Sbjct: 423 LHLSFNYL------SGTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLI 472

Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-----PNLKTLSLDGN 211
           L    +       L + T L  ++L+ NRL     +   P       NL  L L  N
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRL-----TGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 33/174 (18%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLL--NLQRIYLKN---SGI--REVHRDTFKYLTIL 107
             ++VLDL+ N+    + E  +S+  L  +L  + L +   SG     + ++    L  L
Sbjct: 343 RGLKVLDLSFNE---FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 108 VEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP----KLPYLKTI 158
               L +N         L   +      L  L+L+ N ++    G  P     L  L+ +
Sbjct: 400 ---YLQNNGFTGKIPPTLSNCS-----ELVSLHLSFNYLS----GTIPSSLGSLSKLRDL 447

Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
           +L    +       L+++  LE+L L+ N L   +         NL  +SL  N
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 53/203 (26%)

Query: 49  LPSTLDSDIQVLDLNNNKIS----------------------YLTKEAFKSIGLL-NLQR 85
           +P      +Q L L  NK +                      +         G    L+ 
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 86  IYLKNSGIR-EVHRDTFKYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGN 139
           + L ++    E+  DT   +  L  +DLS N+        L   +      L  L L+ N
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSN 378

Query: 140 PITELRAGQFP------KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL---- 189
             +    G             L+ + LQ+          L + + L SL+L+ N L    
Sbjct: 379 NFS----GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 190 -KHLSESVFFPTPNLKTLSLDGN 211
              L          L+ L L  N
Sbjct: 435 PSSLGSL-----SKLRDLKLWLN 452

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 255 QEFACPP-NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
             F+  P +V +         G                + W   G  +  S+       E
Sbjct: 9   SAFSKKPRSVEVAA-------GSPAVFEAET-ERAGVKVRWQRGGSDISASN-KYGLATE 59

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
           G        ++T+  V   D G Y   A + +    
Sbjct: 60  GT-----RHTLTVREVGPADQGSYAVIAGSSKVKFD 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P       + + + E GG  T+ C +     P + W     VL          +EG    
Sbjct: 8   PVRFQEALKDLEVLE-GGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQEGA--- 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              + + + N+   D+G Y+C   +   +A+
Sbjct: 62  --MLELVVRNLRPQDSGRYSCSFGDQTTSAT 90

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 17/89 (19%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
           +I     N T++C V    +  +      + L +                     T+   
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 147

Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
                  + C A N     S    ++ PE
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 275 GGNVTMSCYVY--GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL-FEKSVSITLFNVTD 331
           G  + ++   +   D    + W     ++      +    +  A     +  + + N+T 
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 332 LDAGEYTCYAENIRGNASGEISLDL 356
            D+G Y     +  G      +LDL
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDL 95

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 51/221 (23%)

Query: 57  IQVLDLNNNKIS-----YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL------- 104
           I  L+L  N +       L  +   +I   N+  + L+ + +          L       
Sbjct: 140 ITSLNLRGNDLGIKSSDELI-QILAAIPA-NVNSLNLRGNNLAS---KNCAELAKFLASI 194

Query: 105 -TILVEVDLSDNQI--------AWLHQDTFLGNDRLKVLYLNGNPITELRAGQF----PK 151
              +  +DLS N +        A++        + +  L L  N +              
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSI---PNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 152 LPYLKTIELQHCQIHSVHKD-------ALIHLTALESLNLNGNRL-----KHLSESVFFP 199
           L +L+T+ L +  + ++ K+       A  ++  +  ++ NG  +       +S  +   
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 200 TPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE 240
           +      SL       +  L   +      +  + P    E
Sbjct: 312 SGKADVPSL------LNQCLIFAQKHQTNIEDLNIPDELRE 346

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 38/189 (20%)

Query: 57  IQVLDLNNNKIS-----YLTKEAFKSIGL----LNLQRIYLKNSGIREVHRDTFKYLTIL 107
           +  L+L+ N +       L  +   +I      LNL   +L      E+ +        +
Sbjct: 53  VTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 108 VEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE---------LRAGQFPKLP 153
             +DL  N       +   Q        +  L L GN +           L A       
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA---- 167

Query: 154 YLKTIELQHCQIHSVH----KDALIHL-TALESLNLNGNRL-----KHLSESVFFPTPNL 203
            + ++ L+   + S +       L  +  ++ SL+L+ N L       L+        ++
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 204 KTLSLDGNP 212
            +L+L  N 
Sbjct: 228 VSLNLCLNC 236

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 38/188 (20%)

Query: 57  IQVLDLNNNKIS-----YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL------- 104
           +  LDL+ N +       L  +AF +    ++  + L  + +          L       
Sbjct: 24  VTSLDLSLNNLYSISTVELI-QAFANTP-ASVTSLNLSGNSLGF---KNSDELVQILAAI 78

Query: 105 -TILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLP 153
              +  ++LS N +       L +        + VL L  N  +       +        
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 154 YLKTIELQHCQIH--SVHK--DALIHL-TALESLNLNGNRL-----KHLSESVFFPTPNL 203
            + ++ L+   +   S  +    L  +   + SLNL GN L       L++ +     ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 204 KTLSLDGN 211
            +L L  N
Sbjct: 199 TSLDLSAN 206

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 45/194 (23%)

Query: 55  SDIQVLDLNNNKISYLTKEAF--------KSIGLLNLQRIYLKNSGIR---EVHRDTFKY 103
             I VLDL  N  S  +   F         SI  LNL+   L         ++       
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 104 LTILVEVDLSDNQIAWLHQDT---FLG------NDRLKVLYLNGNPITE------LRAGQ 148
           +  L   +L  N +           L          +  L L+ N +             
Sbjct: 169 VNSL---NLRGNNL----ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 149 FPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRLKHLSE-------SVF 197
                ++ ++ L    +H       K     L  L+++ L+ + +K++S+       + F
Sbjct: 222 SIP-NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280

Query: 198 FPTPNLKTLSLDGN 211
                +  +  +G 
Sbjct: 281 PNIQKIILVDKNGK 294

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP V   +S      G    + C     P  T   W         +  +  E     +  
Sbjct: 83  PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142

Query: 319 EKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
           +    + + N+  + D G+Y C   + +G+    I+L 
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 18/88 (20%)

Query: 273 EAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT 330
           + G  + ++C +           WL  G VL   +                        +
Sbjct: 11  DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------------GQKTEFKVDS 57

Query: 331 DLDAGEYTCYAENIRGNASGEISLDLPE 358
           D   GEY+C          G  ++ L  
Sbjct: 58  DDQWGEYSCVFLP---EPMGTANIQLHG 82

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P   T    +    E G    + C +         W    + L +     L ++      
Sbjct: 19  PIKFTEGLRNEEATE-GATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARC-- 73

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                + +  +   DAGEY C     R +A 
Sbjct: 74  ----ELQIRGLVAEDAGEYLCMCGKERTSAM 100

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 53.0 bits (126), Expect = 7e-08
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 26/145 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQ--------VLHNSSFDL 308
            P +T+    +    G +V M C V          + WL +          + + S+  +
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 309 LEEEEGD------ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLA 362
                 +        F    S+ L +V   D G YTC       +   +  ++L      
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------ 118

Query: 363 TTLSKTDSWYMLVLGISV---CVVS 384
             L +      + +G +    C + 
Sbjct: 119 WVLPEEPRDLRVRVGDTTQMRCSIQ 143

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 21/117 (17%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEP---TILWLLNG-------QVLHNSSFDLLEEE 312
           +  +   +    G    M C +    E     + W+ +         VL   S     + 
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 313 EGDALFEKSV-----------SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           +    F   V           SI L  V + D G YTC     +  +   I L + +
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 16/95 (16%)

Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEG 314
           E      +      V +E    + + C+ + +     + +L NG+               
Sbjct: 85  EVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------- 134

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                 +    +   T  D+G Y C       N S
Sbjct: 135 -----HNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 26/97 (26%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P   ++ E         +VT+ C     PE  +  W  N  ++                 
Sbjct: 14  PQWYSVLE-------KDSVTLKCQGAYSPEDNSTQWFHNESLIS---------------- 50

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            ++ S  +   T  D+GEY C         S  + L+
Sbjct: 51  SQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLE 85

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
              V     +  +E G  + + C+ + D P   + +  NG+    S              
Sbjct: 86  EWLVLQTPHLEFQE-GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------------- 131

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
               + ++       +G+Y C         S
Sbjct: 132 -LDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 26/97 (26%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP + + +         +VT++C     PE  +I W  NG ++   +             
Sbjct: 11  PPWINVLQ-------EDSVTLTCQGARSPESDSIQWFHNGNLIPTHT------------- 50

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                   F   + D+GEYTC       + S  + L 
Sbjct: 51  ---QPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLT 82

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 16/91 (17%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
              +      V +E    + + C+ + +     + +L NG+                   
Sbjct: 89  GWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH------------- 134

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
             +    +   T  D+G Y C       N S
Sbjct: 135 -HNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 35/229 (15%), Positives = 62/229 (27%), Gaps = 59/229 (25%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           P    + E         +VT+ C     PE  +  W  N  ++                 
Sbjct: 14  PQWYRVLE-------KDSVTLKCQGAYSPEDQSTQWFHNESLIS---------------- 50

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
            ++ S  +   T  D+GEY C  +      S  + L++                 L+L  
Sbjct: 51  SQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEV-------------HIGWLLLQA 95

Query: 379 SVCVV----SVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTD 434
              V      + +        C + ++    +    +  +   +            T  D
Sbjct: 96  PRWVFKEEDPIHLR-------CHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKD 148

Query: 435 RHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPP 483
             +  C  L    +      S       V ITI        +S F PP 
Sbjct: 149 SGSYFCRGLVGSKN----VSS-----ETVQITITQGLAVSTISSFFPPG 188

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 23/208 (11%), Positives = 60/208 (28%), Gaps = 49/208 (23%)

Query: 38  SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIR- 94
           + +        L  +    +  ++L + ++        +++    L  +++ L+ + +  
Sbjct: 90  TVVAA-----VL-GSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGP 140

Query: 95  -------EVHRDTFKYLTILVEVDLSDNQIAWLHQDT--------FLGNDRLKVLYLNGN 139
                  ++       +T L    LS+N +                 GN  +  L L   
Sbjct: 141 EACKDLRDLLLHDQCQITTL---RLSNNPL----TAAGVAVLMEGLAGNTSVTHLSLLHT 193

Query: 140 PITELRAGQF----PKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRL-- 189
            + +           +   L+ + + +             A     +LE L+L  N L  
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253

Query: 190 ---KHLSESVFFPTPN--LKTLSLDGNP 212
              + L +          +     +G  
Sbjct: 254 EGRQVLRDLGGAAEGGARVVVSLTEGTA 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 30/172 (17%)

Query: 62  LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR---EVHRDTFKYLTILVEVDLSDNQI- 117
               +    + E   S+  LNL  + +          V       L  +   +L+  Q+ 
Sbjct: 58  HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEV---NLASCQLD 114

Query: 118 ----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLPYLKTIELQHCQI--H 166
                 L         R + L L  N +       LR         + T+ L +  +   
Sbjct: 115 PAGLRTLLP----VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170

Query: 167 SVHK--DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
            V    + L   T++  L+L    L     + L+  +      L+ L++  N
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYN 221

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDL 308
           + V  + F+    +     +V+   G  + + C+ +       +++  +G+ L       
Sbjct: 77  EPVYLEVFSDWLLLQASAEVVM--EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--- 131

Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLD 355
                      ++ +I++ N T  D+G Y C  +  + +  S  +++ 
Sbjct: 132 -----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 26/110 (23%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP   I +       G NVT++C      E  +  W  NG +                  
Sbjct: 11  PPWNRIFK-------GENVTLTCNGNNFFEVSSTKWFHNGSLSE---------------- 47

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
           E + S+ + N    D+GEY C  +    N S  + L++    L    S  
Sbjct: 48  ETNSSLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQASAE 95

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 255 QEFACPPNVTIK-ESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
           +      N+ +   S + +     + ++C V   D   +  W   G  L +         
Sbjct: 103 RILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP------- 155

Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                   +++++          +YTC AEN   N S  +S 
Sbjct: 156 --------NLTVSWDPRIS-SEQDYTCIAENAVSNLSFSVSA 188

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSC-YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P   +   ++    G +VT++C  V  +   T+ W+L                      
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA---------GSHPSRWA 56

Query: 319 EKSVSITLFNVTDLDAGEYTCYAEN 343
                + L +V   D+G Y+CY   
Sbjct: 57  GMGRRLLLRSVQLHDSGNYSCYRAG 81

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 17/109 (15%)

Query: 263 VTIKESMVIREAGGNVTMSCYVY--------------GDPEPTILWLLNGQVLH---NSS 305
           V      +    G    + C +                     +    NG+         
Sbjct: 9   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68

Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           +    E   +++ E  V++ + NV   D G YTC+  +        + L
Sbjct: 69  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 79/537 (14%), Positives = 136/537 (25%), Gaps = 197/537 (36%)

Query: 53  LDSDIQVLDLNNNKISYLTKEAFKS----IGLLNLQRIYLKNSGIREV----HRD--TFK 102
           +D +          I  + ++AF        + ++ +  L    I  +         T +
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 103 YLTIL-----------VEVDLSDNQIAWLHQ-----------DTFLGNDRLKVLYLNGNP 140
               L           VE  L  N   +L              T +  ++   LY N N 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQ 124

Query: 141 ITELRAGQFPKL------PYLKT----IELQHCQIHSVH------KDALIHLTALESLNL 184
           +       F K       PYLK     +EL+  +   +       K  +    AL+    
Sbjct: 125 V-------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCL- 172

Query: 185 NGNRLKHLSESVFF------PTP-----NLKTLSLDGNP-WCCDCH-----------LRS 221
           +      +   +F+       +P      L+ L    +P W                +++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 222 FRNWLLKSKLYSHPLSCTEPGMLQTKHWDDV------KAQEFACPPNVTIKESMVIREAG 275
               LLKSK Y + L      +L      +V       A   +C   +T +   V     
Sbjct: 233 ELRRLLKSKPYENCLL-----VL-----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
              T   ++  D                     L  +E  +L  K +             
Sbjct: 283 AATT--THISLDHHS----------------MTLTPDEVKSLLLKYLDCRPQ-------- 316

Query: 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCV 395
                              DLP                 VL  +   +S+I         
Sbjct: 317 -------------------DLPR---------------EVLTTNPRRLSIIAE------S 336

Query: 396 CRAHEHKNKRRKRKGKMKQS----VSFNDQE----KKLL--------DVSITT------- 432
            R         K     K +     S N  E    +K+            I T       
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 433 TDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNH 489
            D        + +    +L + SL  +QP    TI        + +        + H
Sbjct: 397 FDVIKSDVMVVVN----KLHKYSLVEKQPKES-TISIP--SIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 82/544 (15%), Positives = 155/544 (28%), Gaps = 172/544 (31%)

Query: 37  KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLT-KEAFKSIGLL-NLQRIYLKNSG-- 92
           K+ +  D              +V    + KI +L  K       +L  LQ++  +     
Sbjct: 163 KTWVALDVC---------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 93  ----------------IREVHRDTFKY------LTILVEVDLSDNQIAWLHQDTFLGNDR 130
                           I+   R   K       L +L+ V   + +      + F  N  
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAW----NAF--NLS 265

Query: 131 LKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
            K+L       +T+  +                   H       + LT  E  +L     
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT--------------HISLDHHSMTLTPDEVKSL----- 306

Query: 190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHP------------LS 237
             L + +     +L    L  NP        S R+ L     + H             L+
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 238 CTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT--ILW 294
             EP   + K +D       +  PP+  I                      P     ++W
Sbjct: 365 VLEPAEYR-KMFDR-----LSVFPPSAHI----------------------PTILLSLIW 396

Query: 295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI----RGNASG 350
                      FD+++ +    +  K    +L    +    E T    +I    +     
Sbjct: 397 -----------FDVIKSDVMVVV-NKLHKYSLV---EKQPKESTISIPSIYLELKVKLEN 441

Query: 351 EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KNKRRKRK 409
           E +L    ++        DS  ++   +     S I            H H KN     +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-----------GH-HLKNIEHPER 489

Query: 410 GKMKQSVSFNDQ--EKKLLDVSITTTDRHTGS-CEALGSQPDMELIEQSLAMEQPPVHIT 466
             + + V  + +  E+K+         RH  +   A GS  +   ++Q    +    +I 
Sbjct: 490 MTLFRMVFLDFRFLEQKI---------RHDSTAWNASGSILN--TLQQLKFYKP---YIC 535

Query: 467 IESHAVDPQVSV---FPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMP 523
                 +  V+    F P  E    +L  S Y ++ + +++  E           + +  
Sbjct: 536 DNDPKYERLVNAILDFLPKIE---ENLICSKYTDL-LRIALMAEDEA--------IFEEA 583

Query: 524 HRSV 527
           H+ V
Sbjct: 584 HKQV 587

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 8e-07
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
              +T++E       G  +T+ C        ++ WL  +G  +  + + +L+  +   L 
Sbjct: 8   TETITVEE-------GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60

Query: 319 EKS--VSITLFNVTDLDAGEYTCYA 341
             +  +SIT+ NVT  D G Y C  
Sbjct: 61  HSANQLSITVPNVTLQDEGVYKCLH 85

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 240 EPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNG 298
           E    + +H  +V     A  P  +I +  +         + C   G  PEP + WL NG
Sbjct: 88  EKDAFKREHLAEVTLSVKADFPTPSISDFEI--PTSNIRRIICSTSGGFPEPHLSWLENG 145

Query: 299 QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           + L+  +  + ++ E + L+  +VS  L +        + C  +      +   + +  +
Sbjct: 146 EELNAINTTVSQDPETE-LY--AVSSKL-DFNMTTNHSFMCLIKYGHLRVNQTFNWNTAK 201

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN-GQ 299
           G    K   ++K        +V +K         G + + C   G  P+P I W  N G+
Sbjct: 105 GDFYEKALVELKVAALGSDLHVDVKGY-----KDGGIHLECRSTGWYPQPQIQWSNNKGE 159

Query: 300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
            +      ++ +  G  L+  +V+ ++  +        +C   +         S+ + +
Sbjct: 160 NIPTVEAPVVADGVG--LY--AVAASV-IMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 263 VTIKESMVIREAGGNVTMSCYVY--------------GDPEPTILWLLNGQVLH---NSS 305
           V      ++   G +  + C+++                    +    +G+ +    ++ 
Sbjct: 7   VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAP 66

Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
           +        D +     ++ + NVT  D+G+Y CY ++  G+   +  ++L  
Sbjct: 67  YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKV 117

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +      +  G N T+SC V G       T+  L   Q L   SF      E   
Sbjct: 89  PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF----AGEPPR 144

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
                ++ T+    +     ++C AE         + 
Sbjct: 145 ARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLF 181

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG------------- 314
           ++V   AG +V + C        +I +    +   N    LL + EG             
Sbjct: 339 TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL 398

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML 374
           +     + ++ L  +T  DAG Y C         +      +             +    
Sbjct: 399 EEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGE 458

Query: 375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSIT-TT 433
            L +         S    +C       +    + +G   ++    D+  +L+ +++   T
Sbjct: 459 TLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS-KAFVNCDENSRLVSLTLNLVT 517

Query: 434 DRHTG--SCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPP 481
               G   C         E     +A+E+     + +        +    
Sbjct: 518 RADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEK 567

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
           VT   + +  E        C         ++    G+        +L   +     + S 
Sbjct: 235 VTFHCA-LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK---DGSF 290

Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           S+ +  +   DAG Y C A +      G    
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNG--------QVLHNSSFDLLE 310
           +T  E M+ +  G    + C     PE      I WL++          ++  S   + +
Sbjct: 8   ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYD 67

Query: 311 EEEG----------DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           +             + L     SI + N+   D G Y C  +   G A+ +I L
Sbjct: 68  DYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 14/108 (12%)

Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVL----HNSSFD 307
                   N++ ++       GG++ + C++         + W    Q+L     +  + 
Sbjct: 4   TGTIETTGNISAEK-------GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWH 56

Query: 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTC-YAENIRGNASGEISL 354
           +    +        + +TL ++T  D GEY C Y     G  +G I L
Sbjct: 57  ISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 151 KLPYLKTIELQHCQIHSVHKDALIHL----TALESLNLNGNRLKHLSESVFFPTPNLKTL 206
            +P L ++ L + +++ +  D +  +      L+ LNL+GN LK   E        L+ L
Sbjct: 168 NIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225

Query: 207 SLDGNPWCCDCHL--RSFRNWLLK 228
            LDGN   CD      ++ + + +
Sbjct: 226 WLDGNS-LCDTFRDQSTYISAIRE 248

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 17/106 (16%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-------YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
           P      ES V++    N T  C +       +      I+W  N   +    + ++   
Sbjct: 4   PCGYISPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRT 62

Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
                     S+T  ++  L+    TC              + +  
Sbjct: 63  AS--------SVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIIS 99

>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A* Length = 319

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 260 PP--NVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-- 313
           PP  NVT  E      + GN+T++C          T+ W  +G  L +   +  +  +  
Sbjct: 184 PPMVNVTCSEV-----SEGNITVTCRASSFYPRNITLTWRQDGVSLSH---NTQQWGDVL 235

Query: 314 --GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSW 371
             G+  ++  V+     +   +   +TCY E    ++    +  +P       L      
Sbjct: 236 PDGNGTYQTWVATR---IRQGEEQRFTCYME----HSGNHGTHPVPS---GKVLVLQSQR 285

Query: 372 YMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKG 410
                 +S  +   ++ I +    C+      K    +G
Sbjct: 286 -TDFPYVSAAMPCFVIIIILCVPCCK-----KKTSAAEG 318

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 20/101 (19%)

Query: 125 FLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA------ 178
            L   +++ +    + I  +       L Y++ I L  C  H +    L  L+       
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENLQK 114

Query: 179 -LESLNLNGNR------LKHLSESVFFPTPNLKTLSLDGNP 212
            +  + +          +  L         NLK L L   P
Sbjct: 115 SMLEMEIISCGNVTDKGIIALH-----HFRNLKYLFLSDLP 150

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL- 332
           +G  V ++C     P   ILW  N + +     D     + D L       +L   ++L 
Sbjct: 20  SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHL-------SLKEFSELE 70

Query: 333 DAGEYTCYAENIRGNAS 349
            +G Y CY    +   +
Sbjct: 71  QSGYYVCYPRGSKPEDA 87

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 17/89 (19%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
           +I     N T++C V    +  +      + L +                     T+   
Sbjct: 100 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 142

Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
                  + C A N     S    ++ PE
Sbjct: 143 WTNLRAPFKCKAVNRVSQESEMEVVNCPE 171

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLH---NSSFDLLEEEEGDALFE-KSVSITLFNVT 330
            GNVT        P   +LW      +    NS F      +     +  S S+T++N+T
Sbjct: 10  YGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 331 DLDAGEYTCYAENIRGNAS 349
             D  EY   + NI     
Sbjct: 69  SSDEDEYEMESPNITDTMK 87

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 24/99 (24%)

Query: 252 VKAQEFACPP--NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ---------V 300
           VK  +   P   NVT+ E       GG   ++C V  +   ++ W    Q          
Sbjct: 3   VKGSQGQFPLTQNVTVVE-------GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKA 55

Query: 301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339
           L ++  +L+     +      +SI++ +V+  D G+YTC
Sbjct: 56  LRDNRIELVRASWHE------LSISVSDVSLSDEGQYTC 88

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +      +  G N+T+ C V G       T++ L   + L          E    
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
                V+ T+    D     ++C  E        E+
Sbjct: 142 -----VTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 28/155 (18%), Positives = 44/155 (28%), Gaps = 26/155 (16%)

Query: 224 NWLLKSKLYSHPLSC-------TEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGG 276
             L++   +    SC        +   L        + Q F  P       S  + E   
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204

Query: 277 NVTMSCYVYGDP---EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
             T+ C + G     E  +   L  Q L+ +          D+      +    +VT  D
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDSF----SAKASVSVTAED 255

Query: 334 AGEYTCYAENIRGNASGEISLDL-------PEINL 361
            G        I GN S E    +       P + L
Sbjct: 256 EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 17/88 (19%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
           +I     N T++C V    +  +      + L +                     T+   
Sbjct: 110 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 152

Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLP 357
                  + C A N     S    ++ P
Sbjct: 153 WTNLRAPFKCKAVNRVSQESEMEVVNCP 180

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 273 EAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSIT 325
           E G +  +   V G     +PTI W   G+ L   S        +E    A    +V + 
Sbjct: 25  ETGKDAVVVAKVNGKELPDKPTIKWF-KGKWLELGSKSGARFSFKESHNSASNVYTVELH 83

Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISLD 355
           +  V   D G Y    +      S   ++D
Sbjct: 84  IGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEP---TILWLLNGQVLHNSSFDLLEEEEGD 315
              V+I+ +     AG   T++  V GD P P   T  W  + Q   N++          
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
                  ++T+ + T  +AG Y    ++     S
Sbjct: 52  ------ATLTVADATSENAGSYKVTVQDTDTMTS 79

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 12/103 (11%), Positives = 22/103 (21%), Gaps = 25/103 (24%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY---GDPEP-----TILWLLNGQVLHNSSFDLLEE 311
                 +       +  +V +   V    G            W     V+  +       
Sbjct: 92  LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------ 145

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                       IT+   T    G YT        +++   S 
Sbjct: 146 -----------DITIQEFTADKNGVYTVKVWGESEDSAASAST 177

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +     +   G + T+ C V         T+      + LH  +F     +   A
Sbjct: 88  PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF----GKAAPA 143

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAEN 343
             E + +       +     ++C A  
Sbjct: 144 PQEATATFNSTADREDGHRNFSCLAVL 170

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 3/96 (3%)

Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                 ++   V   AG   T  C   G         L G  + ++    ++        
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---R 219

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               S  + N T  DAG+Y C      G      + 
Sbjct: 220 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 255

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 9/110 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEE------- 311
                 K ++ + E       +C    G+P P I W  NGQ L        E        
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
            E   L   + ++ L    D     + C A            LD P  +L
Sbjct: 179 REASGLLSLTSTLYLRLRKDDRDASFHCAAHY-SLPEGRHGRLDSPTFHL 227

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
           +G +V ++C +  D +  + W  NGQ L                 +K + +  F+  + D
Sbjct: 13  SGTSVELTCPL--DSDENLKWEKNGQELPQKH-------------DKHLVLQDFSEVE-D 56

Query: 334 AGEYTCYAENIRGNAS 349
           +G Y CY      N  
Sbjct: 57  SGYYVCYTPASNKNTY 72

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 14/91 (15%)

Query: 267 ESMVIREAGGNVTMSC-YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS---- 321
              V    G  VT+ C Y       T  W             L+        ++KS    
Sbjct: 4   YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63

Query: 322 ---------VSITLFNVTDLDAGEYTCYAEN 343
                    VS+T+ N  + D+G Y C  E 
Sbjct: 64  LKGHISEGDVSLTIENSVESDSGLYCCRVEI 94

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 267 ESMVIREAGGNVTMSC-YVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKS--- 321
           E  +I   G  VT+ C Y+        + W          + +LL  +    +  KS   
Sbjct: 3   EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY 62

Query: 322 ----------VSITLFNVTDLDAGEYTCYAEN 343
                     VS+T+ N    D+G Y C  E 
Sbjct: 63  TLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 49  LPSTLDSDIQVLDLNNNKISYLTKEAFKSIGL--LNLQRIYLKNSGIREVHRDTFKYLTI 106
           L   LD+   + +L     + L+        L  L +    L +S + ++       L  
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 107 L-----VEVDLSDNQIAWLHQDTFLGNDR---LKVLYLNGNPITELRA---GQFPKLPYL 155
           L     VE    D  +           DR   LK L +       +      +   LP L
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRP--LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 156 KTIELQHCQIHSVHKDALI----HLTALESLNLNGNRL 189
           +T+++    +       L+     +  L+ +N+  N L
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.1 bits (97), Expect = 5e-04
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 9/116 (7%)

Query: 228 KSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD 287
            S   +  ++  +          ++      CP            + GG   + C     
Sbjct: 501 WSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS- 559

Query: 288 PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
               + W     VL   S         + L        +FN+++ D+G Y C +E 
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLL--------IFNLSEGDSGVYQCLSEE 607

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
                 P ++ + S V+   GGNVT+ C          +    G+  H    +      G
Sbjct: 96  TGAYIKPTLSAQPSPVVNS-GGNVTLQCDS-QVAFDGFILCKEGEDEHPQCLNSQPHARG 153

Query: 315 D--ALFEKSVSITLFNVTDLDAGEYTCYA 341
              A+F      ++  V+      Y CYA
Sbjct: 154 SSRAIF------SVGPVSPSRRWWYRCYA 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	610
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	100.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.93
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.79
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.78
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.78
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.77
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.76
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.76
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.76
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.75
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.75
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.75
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.74
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.74
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.74
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.73
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.72
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.72
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.72
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.72
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.71
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.71
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.71
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.71
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.7
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.69
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.69
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.69
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.69
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.69
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.68
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.67
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.67
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.67
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.67
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.66
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.66
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.66
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.66
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.66
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.66
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.66
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.66
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.66
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.66
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.65
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.65
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.65
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.65
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.65
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.65
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.65
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.65
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.65
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.65
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.64
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.63
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.63
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.63
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.63
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.63
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.63
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.62
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.62
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.62
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.62
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.61
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.61
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.61
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.6
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.6
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.6
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.6
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.55
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.55
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.54
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.54
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.54
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.54
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.54
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.54
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.53
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.52
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.52
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.52
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.52
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.51
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.51
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.51
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.51
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.51
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.5
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.5
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.5
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.5
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.5
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.5
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.49
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.49
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.49
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.49
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.49
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.49
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.49
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.49
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.48
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.48
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.48
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.47
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.47
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.47
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.47
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.46
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.46
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.46
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.46
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.45
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.45
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.45
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.45
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.45
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.45
1he7_A	126	High affinity nerve growth factor receptor; transf	99.45
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.45
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.44
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.44
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.43
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.43
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.43
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.43
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.43
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.43
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.42
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.42
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.42
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.42
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.42
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.41
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.41
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.41
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.41
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.41
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.4
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.4
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.39
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.39
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.39
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.38
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.38
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.38
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.38
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.38
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.38
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.38
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.37
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.37
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.37
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.37
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.37
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.36
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.36
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.36
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.36
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.36
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.36
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.36
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.36
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.35
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.35
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.35
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.35
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.35
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.34
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.34
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.33
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.33
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.32
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.31
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.31
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.3
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.3
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.3
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.3
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.3
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.3
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.29
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.28
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.28
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.28
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.28
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.27
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.27
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.27
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.27
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.26
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.26
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.25
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.25
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.25
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.25
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.25
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.24
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.24
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.24
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.24
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.23
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.23
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.23
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.23
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.23
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.23
2ens_A	96	Advanced glycosylation END product-specific recept	99.23
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.22
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.22
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.22
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.22
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.21
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.21
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.21
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.2
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.2
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.19
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.19
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.19
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.19
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.18
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.18
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.18
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.17
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.17
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.17
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.16
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.16
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.15
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.15
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.15
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.15
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.14
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.14
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.14
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.13
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.13
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.13
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.12
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.12
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.11
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.1
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.1
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.1
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.1
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.1
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.1
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.1
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.09
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.08
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.06
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.06
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.05
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.03
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.02
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.01
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.01
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.0
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.0
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.99
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.99
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.99
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.99
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.99
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.98
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.98
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.97
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.97
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.97
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.97
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.96
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.96
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.96
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.96
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.95
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.95
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.95

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=8.6e-45  Score=389.24  Aligned_cols=332  Identities=23%  Similarity=0.459  Sum_probs=252.1

Q ss_pred             CCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487         19 PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR   98 (610)
Q Consensus        19 ~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~   98 (610)
                      .....||..|.|...  ...++|.+.+|+++|..++.+++.|+|++|+|+.+....|.  ++.+|++|+|++|.|..+.+
T Consensus        30 ~~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~  105 (440)
T 3zyj_A           30 GSAQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEI  105 (440)
T ss_dssp             ---CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECG
T ss_pred             cccccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccCh
Confidence            344589999999854  36899999999999999999999999999999999888887  68888888888888888887


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc--------------------------------
Q psy10487         99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA--------------------------------  146 (610)
Q Consensus        99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--------------------------------  146 (610)
                      .+|.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+..                                
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            788888888888888888777776666666666666666665554432                                


Q ss_pred             ---------------------------------------CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        147 ---------------------------------------GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       147 ---------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                                                             ..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+|++|
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence                                                   22333333444444444444444445556677778888888


Q ss_pred             cccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccC--CCCCCCCCCCCccCCCcccccccccccCC-Ccee
Q psy10487        188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL--YSHPLSCTEPGMLQTKHWDDVKAQEFACP-PNVT  264 (610)
Q Consensus       188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l--~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-P~i~  264 (610)
                      +++.++...|..+++|+.|++++|+|.|||.+.|+..|+.....  ......|..|..+.|+.+.++....+.|. |.+.
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~  345 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIV  345 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEE
T ss_pred             CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCccc
Confidence            88888888888899999999999999999999999999986532  23457899999999999999999999995 7777


Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCCEE-eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV-LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..+....+.+|++++|.|.+ +.|.|.+.|++++.. +.........      .....++|+|.+++.+|+|.|+|+|.|
T Consensus       346 ~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N  418 (440)
T 3zyj_A          346 EPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRI------AVLSDGTLNFTNVTVQDTGMYTCMVSN  418 (440)
T ss_dssp             ECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSE------EECTTCCEEESSCCSTTCEEEEEEEEC
T ss_pred             ccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceE------EEccCCeEEEccCChhhCEEEEEEEEc
Confidence            78889999999999999999 679999999995543 3322211111      112235899999999999999999999


Q ss_pred             CCcceeEEEEEEcCcccc
Q psy10487        344 IRGNASGEISLDLPEINL  361 (610)
Q Consensus       344 ~~G~~~~~~~L~V~~~~~  361 (610)
                      ..|.+++++.+.|.+.+.
T Consensus       419 ~~G~~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          419 SVGNTTASATLNVTGTHH  436 (440)
T ss_dssp             SSCEEEEEEEEEEC----
T ss_pred             CCCcEEEEEEEEEecccc
Confidence            999999999999965443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.8e-44  Score=388.08  Aligned_cols=332  Identities=25%  Similarity=0.438  Sum_probs=255.2

Q ss_pred             CCCCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc
Q psy10487         17 GSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV   96 (610)
Q Consensus        17 ~~~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i   96 (610)
                      +......||..|.|.+.  ...++|.+.+++++|..++.+++.|+|++|+|+.+.+..|.  ++++|++|+|++|.|..+
T Consensus        39 ~~~~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~  114 (452)
T 3zyi_A           39 ASAGPQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQI  114 (452)
T ss_dssp             -----CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEE
T ss_pred             ccCCcCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCc
Confidence            33445699999999864  35899999999999999999999999999999999888887  788888888888888888


Q ss_pred             chhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCc----------------------------
Q psy10487         97 HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ----------------------------  148 (610)
Q Consensus        97 ~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~----------------------------  148 (610)
                      .+.+|.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+....                            
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~  194 (452)
T 3zyi_A          115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG  194 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred             ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence            8888888888888888888888777777777777777777776665544322                            


Q ss_pred             -------------------------------------------CCCCCCccEEEccCccccccCHHHhhcCccccccccc
Q psy10487        149 -------------------------------------------FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN  185 (610)
Q Consensus       149 -------------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  185 (610)
                                                                 |.++++|+.|+|++|+|..+.+..|..+++|+.|+|+
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence                                                       2223333333333334444444445566777777788


Q ss_pred             cccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccC--CCCCCCCCCCCccCCCcccccccccccCC-Cc
Q psy10487        186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL--YSHPLSCTEPGMLQTKHWDDVKAQEFACP-PN  262 (610)
Q Consensus       186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l--~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-P~  262 (610)
                      +|+|+.++...|..+++|+.|++++|+|.|||.+.|+..|+.....  ......|..|..+.|..+.++....+.|. |.
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~  354 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPF  354 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCC
T ss_pred             CCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCcc
Confidence            8888888878888889999999999999999999999999986432  23457899999999999999999999995 77


Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      +...+....+.+|++++|.|.+.  |.|.|.|++++. .+.........      .....++|.|.+++.+|+|.|+|+|
T Consensus       355 i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~------~~~~~g~L~i~~v~~~D~G~Y~C~a  426 (452)
T 3zyi_A          355 IMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRI------SVLNDGTLNFSHVLLSDTGVYTCMV  426 (452)
T ss_dssp             CSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSC------EECTTSCEECSSCCTTCCEEEEEEE
T ss_pred             cccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCE------EECCCCeEEEeecCHHHCEEEEEEE
Confidence            77778889999999999999998  999999999544 44322111000      1122358999999999999999999


Q ss_pred             ecCCcceeEEEEEEcCccc
Q psy10487        342 ENIRGNASGEISLDLPEIN  360 (610)
Q Consensus       342 ~N~~G~~~~~~~L~V~~~~  360 (610)
                      .|.+|.+++++.|.|.+..
T Consensus       427 ~N~~G~~~~~~~l~v~~~~  445 (452)
T 3zyi_A          427 TNVAGNSNASAYLNVSTAG  445 (452)
T ss_dssp             ECSSCEEEEEEEEEC----
T ss_pred             EcCCCcEEEEEEEEEEccc
Confidence            9999999999999996543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=100.00  E-value=8.5e-43  Score=363.67  Aligned_cols=320  Identities=25%  Similarity=0.379  Sum_probs=271.5

Q ss_pred             CCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487         19 PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR   98 (610)
Q Consensus        19 ~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~   98 (610)
                      .....||..|.|.+    ..++|.+++|+++|..++..++.|+|++|+|+.++...|.. ++.+|++|+|++|.|..+.+
T Consensus         7 ~~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            7 RSVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             CCCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECT
T ss_pred             CcCCCCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccCh
Confidence            45568999999984    58999999999999999999999999999999999887741 58899999999999999999


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHh---hc
Q psy10487         99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL---IH  175 (610)
Q Consensus        99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~  175 (610)
                      .+|.++++|++|+|++|+|..+++..|.++.+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++...|   ..
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988777   56


Q ss_pred             CccccccccccccccccCcccccCCCc--ccEEecCCCcccccCCchhh-HHHHhhcc----CCCCCCCCCCCCccCCCc
Q psy10487        176 LTALESLNLNGNRLKHLSESVFFPTPN--LKTLSLDGNPWCCDCHLRSF-RNWLLKSK----LYSHPLSCTEPGMLQTKH  248 (610)
Q Consensus       176 l~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~N~~~c~c~l~~~-~~~l~~~~----l~~~~~~C~a~~~l~g~~  248 (610)
                      +++|+.|+|++|+|+.++...+..++.  ++.|++.+|+|.|+|.+.|+ ..|.....    .....+.|..|..+.+  
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~--  239 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN--  239 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--
Confidence            899999999999999999877877776  47899999999999999986 56765432    2346789998865442  


Q ss_pred             ccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEe
Q psy10487        249 WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFN  328 (610)
Q Consensus       249 ~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~  328 (610)
                      +  .....+.|.+   ..+..+.+.+|++++|.|.+.| |.|.|.|++++..+......     ..+... ..+.|+|.+
T Consensus       240 ~--~~~~~~~C~~---~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~-----~~r~~~-~~~~L~I~~  307 (361)
T 2xot_A          240 I--FSLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGS-----NGSVSV-RNGDLFFKK  307 (361)
T ss_dssp             G--GGCCCTTCCS---CCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCS-----SSSEEE-ETTEEEESS
T ss_pred             c--cccccccCCC---ccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeeccc-----CCceEe-ecCeEEEee
Confidence            2  2223678887   3466788999999999999999 99999999977654332210     001111 345899999


Q ss_pred             cCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        329 VTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ++.+|+|.|+|+|.|..|.++..+.|.|.
T Consensus       308 v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          308 VQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             CCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            99999999999999999999999999983

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=358.02  Aligned_cols=324  Identities=29%  Similarity=0.494  Sum_probs=234.3

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .||..|.|...  .+.++|.+.+++++|..++.+++.|+|++|+|+.+.+..|.  ++++|++|+|++|.|..+.+.+|.
T Consensus         2 ~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~   77 (477)
T 2id5_A            2 GCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN   77 (477)
T ss_dssp             CCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh
Confidence            69999999753  46899999999999999999999999999999999888887  678888888888888887777777


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcccccc------------------------CcCcCCCCCCccEE
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL------------------------RAGQFPKLPYLKTI  158 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l------------------------~~~~~~~l~~L~~L  158 (610)
                      ++++|++|+|++|+|..++...|.++++|++|+|++|.++.+                        .+..|..+++|+.|
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL  157 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence            777777777777777776665565555555555555544433                        22233333333333


Q ss_pred             EccCccccccCH--------------------------------------------------------------------
Q psy10487        159 ELQHCQIHSVHK--------------------------------------------------------------------  170 (610)
Q Consensus       159 ~L~~n~l~~~~~--------------------------------------------------------------------  170 (610)
                      +|++|+++.+.+                                                                    
T Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred             ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence            333332222211                                                                    


Q ss_pred             ----------------------------------------------------HHhhcCccccccccccccccccCccccc
Q psy10487        171 ----------------------------------------------------DALIHLTALESLNLNGNRLKHLSESVFF  198 (610)
Q Consensus       171 ----------------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~  198 (610)
                                                                          ..|..+++|+.|+|++|+++.++...|.
T Consensus       238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence                                                                1122223333444444444444455566


Q ss_pred             CCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccc----cccCC-Cceee-eecceEe
Q psy10487        199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQ----EFACP-PNVTI-KESMVIR  272 (610)
Q Consensus       199 ~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~----~~~c~-P~i~~-~~~~~~v  272 (610)
                      .+++|+.|++++|+|.|+|.+.|+..|.....+....+.|..|..+.|..+.++...    .+.|. |.+.. .+..+.+
T Consensus       318 ~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~~v  397 (477)
T 2id5_A          318 SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFV  397 (477)
T ss_dssp             CGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESCCSCEEEEE
T ss_pred             CCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEeccccccccccccEEE
Confidence            677889999999999999999998887666666777899999999999888776543    46775 44433 3578889


Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI  352 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  352 (610)
                      .+|++++|.|.+.|.|.|.|.|++++..+..........      ....++|+|.+++.+|+|.|+|+|.|..|.+++++
T Consensus       398 ~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  471 (477)
T 2id5_A          398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT------VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPA  471 (477)
T ss_dssp             ETTCCEEECCCEEEESCCEEEEECTTSCBC-------CE------ECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             eCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEE------eCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEE
Confidence            999999999999999999999999987765322111111      11224899999999999999999999999999999


Q ss_pred             EEEc
Q psy10487        353 SLDL  356 (610)
Q Consensus       353 ~L~V  356 (610)
                      .|.|
T Consensus       472 ~l~V  475 (477)
T 2id5_A          472 HLHV  475 (477)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=100.00  E-value=3.3e-37  Score=319.78  Aligned_cols=317  Identities=21%  Similarity=0.252  Sum_probs=228.4

Q ss_pred             EEEccCC-CCCCCCcccccCCCCCcEEEeeC-ccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487        109 EVDLSDN-QIAWLHQDTFLGNDRLKVLYLNG-NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG  186 (610)
Q Consensus       109 ~LdLs~n-~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  186 (610)
                      .++++++ +|..++.  |..+.+|+.|+|++ |.|+.+.+..|.+|++|+.|+|++|+|+.+.+..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566665 6766654  66667777777775 777777766777777777777777777777777777788888888888


Q ss_pred             ccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCcccccccccccC-CCce
Q psy10487        187 NRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKHWDDVKAQEFAC-PPNV  263 (610)
Q Consensus       187 n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~~~~v~~~~~~c-~P~i  263 (610)
                      |+|+.++...|..+. |+.|++.+|+|.|+|.+.||..|.....  ++.+.|+|.+++.+.     ++.  .+.| +|.+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~-----~l~--~~~c~~P~i  161 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA-----HMP--NASCGVPTL  161 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS-----CCC--CTTCCCCEE
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh-----cCC--cccCCCCce
Confidence            888888777776665 9999999999999999999999998654  456899999988333     222  2457 6888


Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EEEEEee
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAE  342 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~  342 (610)
                      ...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.......        .....+.|.|.+++.+|+| .|+|.|.
T Consensus       162 ~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             EEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             eccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------eecccceEEEeeCChHHCCCeEEEEEE
Confidence            888899999999999999999999999999999887644322111        1134568999999999999 9999999


Q ss_pred             cCCcceeEEEEEEcCcccccccc-ccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc--cc---
Q psy10487        343 NIRGNASGEISLDLPEINLATTL-SKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ--SV---  416 (610)
Q Consensus       343 N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---  416 (610)
                      |..|..+..+.|.|..   +|.+ ...+.     .+..          ..+.|.....+.+...|.+.+..-.  ..   
T Consensus       234 n~~g~~~~~~~l~V~~---~P~i~~~~~~-----~g~~----------v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~  295 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSF---PASVQLHTAV-----EMHH----------WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT  295 (347)
T ss_dssp             ETTEECCEEECCCCBE---EEEEEECCCE-----ESSS----------EEEEEEEEEESCCEEEEEETTEECCCCSSEEE
T ss_pred             cCCCCEEEEEEEEEcC---CCeeeeccCc-----cCce----------EEEEEEeeecCCCcEEEEeCCEECCCCcceee
Confidence            9999998888888743   2232 11110     0000          1122333333333333433221100  00   


Q ss_pred             -------cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        417 -------SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       417 -------~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                             ......+.|.|.+++.+|+|.|+|+|.|..|.++.++.+.|.++|
T Consensus       296 ~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          296 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence                   001235579999999999999999999999999999999888643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.97  E-value=6.3e-30  Score=247.05  Aligned_cols=210  Identities=30%  Similarity=0.547  Sum_probs=169.0

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      ..||..|.|.+    ..++|.+++++++|..++.+++.|+|++|.|+.++...|.  ++.+|++|+|++|.|..+.+.+|
T Consensus         3 ~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~   76 (220)
T 2v9t_B            3 LHCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAF   76 (220)
T ss_dssp             CCSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHh
Confidence            47999999986    5899999999999999999999999999999888877776  67788888888888888777778


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                      .++++|++|+|++|+|+.+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+                 
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-----------------  139 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-----------------  139 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-----------------
Confidence            888888888888877777776666666666666666666666655555555555555555554                 


Q ss_pred             cccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487        182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP  261 (610)
Q Consensus       182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P  261 (610)
                             |+.++...|..+++|+.|++++|+|.|+|.+.|+..|+.........+.|..|..++|+.+.++...++.|.-
T Consensus       140 -------l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~  212 (220)
T 2v9t_B          140 -------LQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA  212 (220)
T ss_dssp             -------CSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCCC--
T ss_pred             -------CCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCcCcc
Confidence                   4444455566678889999999999999999999999998887778899999999999999999999998863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.96  E-value=5.7e-30  Score=265.27  Aligned_cols=309  Identities=22%  Similarity=0.299  Sum_probs=200.1

Q ss_pred             CCCCC-eeCccCCCcEEEcCCC-CCCccCcccCC--CccEEEeec-CCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487         24 CPDTC-RCKWTLGKKSALCKDA-NFTALPSTLDS--DIQVLDLNN-NKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR   98 (610)
Q Consensus        24 Cp~~C-~C~~~~~~~~~~C~~~-~l~~lP~~l~~--~L~~L~L~~-n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~   98 (610)
                      ||..| .|.+    ..++|.++ +|+.||. ++.  +|++|+|++ |.|+.+++..|.  +|.+|+.|+|++|+|+.+.+
T Consensus         1 cp~~c~~C~~----~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            1 CPDACCPHGS----SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CCSSSCCSSS----SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred             CCCcCccccC----CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence            99999 9985    47899998 9999998 865  599999996 999999999998  79999999999999999999


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHHhhcCc
Q psy10487         99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLT  177 (610)
Q Consensus        99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (610)
                      .+|.++++|++|+|++|+|..+++..|..+. |+.|+|.+|.+..... ..|..+.......+..+.++...+.      
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~------  146 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG------  146 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS------
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh------
Confidence            9999999999999999999999988888776 9999999998875432 0011111111111222333333222      


Q ss_pred             cccccccccccccccCcccccCCCcccEEecCCCc--cccc------CCchhhHHH-------------------H-hhc
Q psy10487        178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP--WCCD------CHLRSFRNW-------------------L-LKS  229 (610)
Q Consensus       178 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~--~~c~------c~l~~~~~~-------------------l-~~~  229 (610)
                      .+..+.+..+..    +.+........ . ..|..  +.|.      -.+.|+..-                   + ...
T Consensus       147 ~l~~l~~~~c~~----P~i~~~~~~~~-v-~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~  220 (347)
T 2ifg_A          147 PLAHMPNASCGV----PTLKVQVPNAS-V-DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT  220 (347)
T ss_dssp             CSSCCCCTTCCC----CEEEEECCSSC-C-BTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCC
T ss_pred             HHhcCCcccCCC----CceeccCCceE-E-eCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCC
Confidence            111111111100    00000000000 0 00000  1111      011111000                   0 012


Q ss_pred             cCCCC-CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        230 KLYSH-PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       230 ~l~~~-~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      ..+.+ .|+|.+.+..+.. ...+... +..+|.+    ....+.+|+.++|.|.+.|.|.|.|.|+++|..+.......
T Consensus       221 ~~D~G~~Y~C~a~n~~g~~-~~~~~l~-V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~  294 (347)
T 2ifg_A          221 SDLNRKNVTCWAENDVGRA-EVSVQVN-VSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF  294 (347)
T ss_dssp             STTTTCCEEECCEETTEEC-CEEECCC-CBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEE
T ss_pred             hHHCCCeEEEEEEcCCCCE-EEEEEEE-EcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCccee
Confidence            24667 8999987765432 2222222 2234544    22335679999999999999999999999999988654432


Q ss_pred             eeecc-CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        309 LEEEE-GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       309 ~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      ..... ........+.|+|.+++.+|+|.|+|+|.|.+|.+++++.|.|.+
T Consensus       295 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          295 TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             eEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            22111 111123467899999999999999999999999999999998853

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.96  E-value=1.1e-28  Score=243.65  Aligned_cols=203  Identities=30%  Similarity=0.536  Sum_probs=191.2

Q ss_pred             CCCCC--CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhh
Q psy10487         23 DCPDT--CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT  100 (610)
Q Consensus        23 ~Cp~~--C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~  100 (610)
                      +||..  |.|...  ...++|.+++++++|..++.+++.|+|++|.|+.+.+..|.  ++++|++|+|++|.|..+.+..
T Consensus         3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~   78 (251)
T 3m19_A            3 TCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGV   78 (251)
T ss_dssp             -CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTT
T ss_pred             cCCCCCceEcCCC--CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhH
Confidence            58765  999643  46899999999999999999999999999999999998888  7999999999999999999999


Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE  180 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (610)
                      |..+++|++|+|++|+|..+++..|..+++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999888899999999


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCccccc-CCchhhHHHHhhc
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD-CHLRSFRNWLLKS  229 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~l~~~~~~l~~~  229 (610)
                      .|+|++|+++.++...|..+++|+.|++.+|+|.|+ |.+.++..|+...
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            999999999999998899999999999999999999 9999999999854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=236.96  Aligned_cols=211  Identities=28%  Similarity=0.516  Sum_probs=171.6

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDT  100 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~  100 (610)
                      ..||..|.|.|    ..++|.+++++++|..++..+++|+|++|.|+.+.+ ..|.  ++++|++|+|++|.|+.+.+.+
T Consensus         3 ~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~   76 (220)
T 2v70_A            3 LACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA   76 (220)
T ss_dssp             -CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence            47999999997    489999999999999999999999999999998853 4566  6788888888888888888778


Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE  180 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (610)
                      |.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+            
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------  144 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV------------  144 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB------------
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE------------
Confidence            88888888888888888888777777777777777777777776666666666666666655555544            


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP  260 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~  260 (610)
                                  .+..|..+++|+.|++++|+|.|+|.+.|+..|+.......+...|..|..++|..+.++...++.|.
T Consensus       145 ------------~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~  212 (220)
T 2v70_A          145 ------------APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCD  212 (220)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGCCCC
T ss_pred             ------------CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHcccc
Confidence                        44455567788899999999999999999999999877777788999999999999999999988876


Q ss_pred             Cc
Q psy10487        261 PN  262 (610)
Q Consensus       261 P~  262 (610)
                      ..
T Consensus       213 ~~  214 (220)
T 2v70_A          213 DA  214 (220)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.1e-28  Score=246.25  Aligned_cols=236  Identities=29%  Similarity=0.501  Sum_probs=169.2

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhccc----------------------CC
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----------------------GL   80 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~----------------------~l   80 (610)
                      +||..|.|... ++..++|.+.+++.+|..++.++++|+|++|.|+.++...|..+                      ++
T Consensus         1 ~CP~~C~C~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   79 (285)
T 1ozn_A            1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (285)
T ss_dssp             CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCceECCC-CCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence            59999999754 34789999999999998888888888888888877776555410                      34


Q ss_pred             CCccEEEcccCC-CcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCC---------
Q psy10487         81 LNLQRIYLKNSG-IREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP---------  150 (610)
Q Consensus        81 ~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~---------  150 (610)
                      ++|++|+|++|. +..+.+..|..+++|++|+|++|++..+.+..|.++++|++|+|++|.++.+....|.         
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            445555555554 5555455555556666666666666665555555555566665555555555444444         


Q ss_pred             ---------------CCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        151 ---------------KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       151 ---------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                                     .+++|+.|+|++|++..+.+..|..+++|+.|++++|.++.++...+..+++|+.|++++|+|.|
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence                           44455555555555555545555566667777777777777766677888999999999999999


Q ss_pred             cCCchhhHHHHhhccCCCCCCCCCCCCccCCCccccccccccc-C
Q psy10487        216 DCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFA-C  259 (610)
Q Consensus       216 ~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c  259 (610)
                      +|.+.|+..|+.........+.|..|..+.|..+.++...++. |
T Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             SGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            9999999999998888888999999999999999888887775 5

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.5e-25  Score=223.56  Aligned_cols=223  Identities=31%  Similarity=0.508  Sum_probs=162.7

Q ss_pred             CCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCC
Q psy10487         26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT  105 (610)
Q Consensus        26 ~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~  105 (610)
                      ..|.|...  ...++|.+++++++|..++.+++.|+|++|.|+.++...|.  ++++|++|+|++|.|..+.+..|.+++
T Consensus        10 ~~C~c~~~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~   85 (270)
T 2o6q_A           10 GVCSCNNN--KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELK   85 (270)
T ss_dssp             CSBEEETT--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred             CCCEeCCC--CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCC
Confidence            57888643  47899999999999999999999999999999999887776  677777777777777776666666666


Q ss_pred             CCcEEEccCCCCCCCCcccccC------------------------CCCCcEEEeeCccccccCcCcCCCCCCccEEEcc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLG------------------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ  161 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~  161 (610)
                      +|++|+|++|++..+++..|.+                        +++|++|+|++|.++.+....|..+++|+.|+|+
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            6666666666666555544444                        4455555555555555555556666677777777


Q ss_pred             CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC----CCCCC
Q psy10487        162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL----YSHPL  236 (610)
Q Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l----~~~~~  236 (610)
                      +|+|..+.+..|..+++|+.|+|++|+++.++...|..+++|+.|++++|+|.|+|. +.++..|+.....    .....
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~  245 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTA  245 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCC
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCcccc
Confidence            777777766667777888888888888888888778888999999999999999997 7888889875432    23446


Q ss_pred             CCCCCCccCCCccccccccc
Q psy10487        237 SCTEPGMLQTKHWDDVKAQE  256 (610)
Q Consensus       237 ~C~a~~~l~g~~~~~v~~~~  256 (610)
                      .|..+    ++.+.++...+
T Consensus       246 ~C~~~----~~~~~~~~~~~  261 (270)
T 2o6q_A          246 GCEKG----GKAVLEITEKD  261 (270)
T ss_dssp             BBSSS----CSBGGGCCTTT
T ss_pred             ccCCC----CeEeEEecchh
Confidence            77542    44455555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-25  Score=228.83  Aligned_cols=223  Identities=23%  Similarity=0.420  Sum_probs=159.8

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc-------
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV-------   96 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i-------   96 (610)
                      ||..|.|.|    ..++|.+.+++++|..++.++++|+|++|.|+.++...|.  ++++|++|+|++|.+..+       
T Consensus         1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence            999999997    4899999999999999999999999999999999887776  566666666666554422       


Q ss_pred             ------------------------------------------ch-hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         97 ------------------------------------------HR-DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        97 ------------------------------------------~~-~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                                                                .. ..|..+++|++|+|++|++..+.+..|.++++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence                                                      11 23455555666666655554444444444445555


Q ss_pred             EEeeC-------------------------ccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccc
Q psy10487        134 LYLNG-------------------------NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR  188 (610)
Q Consensus       134 L~Ls~-------------------------N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  188 (610)
                      |+|++                         |.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            55554                         44444444555566666666666666666655556666777777777777


Q ss_pred             ccccCcccccCC-CcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccc
Q psy10487        189 LKHLSESVFFPT-PNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDV  252 (610)
Q Consensus       189 l~~~~~~~~~~~-~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v  252 (610)
                      +.+..+..+..+ ++|+.|++++|+|.|+|.+.||..|+....   .+...+.|..|..++|..+..+
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~  302 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL  302 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGC
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeee
Confidence            777666667777 489999999999999999999999998643   3556789999998888776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2.6e-25  Score=224.03  Aligned_cols=201  Identities=26%  Similarity=0.439  Sum_probs=163.1

Q ss_pred             CCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-------
Q psy10487         26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-------   98 (610)
Q Consensus        26 ~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~-------   98 (610)
                      +.|.|..-...+.++|.+++++++|..++.+++.|+|++|.|+.+.+..|.  ++++|++|+|++|.|..+..       
T Consensus         2 p~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L   79 (290)
T 1p9a_G            2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVL   79 (290)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred             CcccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcC
Confidence            457776555568999999999999999999999999999999999888776  56666666666666554432       


Q ss_pred             --------------hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487         99 --------------DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ  164 (610)
Q Consensus        99 --------------~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~  164 (610)
                                    ..|..+++|++|+|++|+|+.+++..|.++++|++|+|++|.++.+++..|..+++|+.|+|++|+
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence                          345667777888888888887777778888888888888888888887778888888888888888


Q ss_pred             ccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhc
Q psy10487        165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKS  229 (610)
Q Consensus       165 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~  229 (610)
                      |+.+++..|..+++|+.|+|++|+++.++...+ .+..|+.+++.+|+|.|+|.+.||..|+...
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            888877777788888888888888888877655 4568999999999999999999999999854

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.4e-25  Score=208.38  Aligned_cols=183  Identities=23%  Similarity=0.473  Sum_probs=132.7

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .||..|.|.+    ..++|.+++++++|..++.++++|+|++|.|+.++ ..|.  ++.+|++|+|++|.|+.+.+.+|.
T Consensus         3 ~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~   75 (193)
T 2wfh_A            3 RCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFS   75 (193)
T ss_dssp             -CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHcc
Confidence            6999999985    58999999999999988889999999988888776 4454  455666666666666655555555


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      ++.+|++|+|++|+|+.+++.                        .|..+++|+.|+|++|+|+.+.+            
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~------------------------~f~~l~~L~~L~L~~N~l~~~~~------------  119 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPR------------------------TFDGLKSLRLLSLHGNDISVVPE------------  119 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTT------------------------TTTTCTTCCEEECCSSCCCBCCT------------
T ss_pred             CCCCCCEEECCCCccCEeCHH------------------------HhCCCCCCCEEECCCCCCCeeCh------------
Confidence            555555555555555554444                        44444455555555544443322            


Q ss_pred             ccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP  260 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~  260 (610)
                                  ..|..+++|+.|++++|+|.|+|.+.||..|+.......+.+.|..|..+.|+.+.++....+.|.
T Consensus       120 ------------~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~  185 (193)
T 2wfh_A          120 ------------GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCA  185 (193)
T ss_dssp             ------------TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC-
T ss_pred             ------------hhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeeh
Confidence                        233445677888999999999999999999998877677778999999999999999988877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.92  E-value=1.4e-24  Score=204.89  Aligned_cols=186  Identities=28%  Similarity=0.547  Sum_probs=136.2

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChh-hhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKE-AFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~-~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      .||..|.|.|    +.++|.+++++++|..++.++++|+|++|.|+.++.. .|.  ++++|++|+|++|.|+.+.+.  
T Consensus         1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~--   72 (192)
T 1w8a_A            1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPN--   72 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTT--
T ss_pred             CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHh--
Confidence            5999999997    5899999999999998888888898888888777653 343  344555555555555544444  


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                                            .|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+.+           
T Consensus        73 ----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------  119 (192)
T 1w8a_A           73 ----------------------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----------  119 (192)
T ss_dssp             ----------------------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-----------
T ss_pred             ----------------------HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-----------
Confidence                                  44445555555555555555555455555556666666555554432           


Q ss_pred             cccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487        182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP  261 (610)
Q Consensus       182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P  261 (610)
                                   ..|..+++|+.|++++|+|.|+|.+.|+..|+....+......|..|..+.+..+.++...++.|..
T Consensus       120 -------------~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          120 -------------GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             -------------TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCC
T ss_pred             -------------HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcCC
Confidence                         2334456778888999999999999999999998887788899999999999999999999999975


Q ss_pred             c
Q psy10487        262 N  262 (610)
Q Consensus       262 ~  262 (610)
                      .
T Consensus       187 ~  187 (192)
T 1w8a_A          187 E  187 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.9e-24  Score=210.99  Aligned_cols=212  Identities=25%  Similarity=0.407  Sum_probs=155.9

Q ss_pred             CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      .|.|.+.  ...++|.+.+++++|..++.++++|+|++|.|+.++...|.  ++++|++|+|++|.+..+.+.+|.++++
T Consensus         2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (276)
T 2z62_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH   77 (276)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             CceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcC
Confidence            5888764  46899999999999999999999999999999999887787  6888899999888888888878888888


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcc-------
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTA-------  178 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~-------  178 (610)
                      |++|+|++|++..+.+..|.++++|++|+|++|.+..+....|..+++|+.|+|++|++..+. +..|..+++       
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            888888888888777666666666666666666666555444555555555555555444422 233333333       


Q ss_pred             --------------------------------------------ccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        179 --------------------------------------------LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       179 --------------------------------------------L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                                                                  |+.|++++|+++.++...|..+++|+.|++++|+|.
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence                                                        444555555555555566777889999999999999


Q ss_pred             ccCC-chhhHHHHhhcc-CCCCCCCCCCCC
Q psy10487        215 CDCH-LRSFRNWLLKSK-LYSHPLSCTEPG  242 (610)
Q Consensus       215 c~c~-l~~~~~~l~~~~-l~~~~~~C~a~~  242 (610)
                      |+|. +.++..|..... ...+...|..+.
T Consensus       238 c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          238 CSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             CCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             ccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence            9996 788889988644 344567887753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.8e-23  Score=198.52  Aligned_cols=174  Identities=31%  Similarity=0.565  Sum_probs=131.3

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      ||..|.|.|    ..++|.+.+++++|..++.++++|+|++|.|+.++...|.  ++.+|++|+|++|++..+.+..|..
T Consensus         1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence            999999997    5899999999999999999999999999999988887776  6788888888888888887777777


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN  183 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  183 (610)
                      +++|++|+|++|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+++.                
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----------------  138 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----------------  138 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----------------
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----------------
Confidence            8888888888888777776666677777777777776666655555555555555555555544                


Q ss_pred             cccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHh
Q psy10487        184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLL  227 (610)
Q Consensus       184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~  227 (610)
                              ++...+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus       139 --------~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          139 --------VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  175 (208)
T ss_dssp             --------CCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred             --------eCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence                    444445556677777777777777775 555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.91  E-value=1.7e-23  Score=203.24  Aligned_cols=187  Identities=30%  Similarity=0.560  Sum_probs=139.1

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      ....|.|.|    ..++|.+++++++|..++.+|++|+|++|.|+.+.+..|.  ++.+|++|+|++|.|..+++..|..
T Consensus        13 ~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           13 CPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             CCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhccc
Confidence            346799997    4799999999999999999999999999999888777776  6777777777777777777666777


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN  183 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  183 (610)
                      +++|++|+|++|+|+.+++..|..+++|+.|+|++|.++.++                         ..+..+++|+.|+
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~~L~~L~  141 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLTHLTHLA  141 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCTTCSEEE
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCCCCCEEE
Confidence            777777777777776666555555555555555555554332                         2345566677777


Q ss_pred             cccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-----------CCCCCCCCCCC
Q psy10487        184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-----------LYSHPLSCTEP  241 (610)
Q Consensus       184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-----------l~~~~~~C~a~  241 (610)
                      |++|+|+.++...|..+++|+.|++.+|+|.|+|. +.++..|+....           .+.....|..+
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~  211 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT  211 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC
Confidence            77777777776677788899999999999999996 889999987532           13345677665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.90  E-value=1.3e-23  Score=218.60  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=141.1

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL  136 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L  136 (610)
                      +.++++++.++.++....     ..|+.|+|++|.|+.+.+..|. ++.+|++|+|++|+|..+.+..|.++++|++|+|
T Consensus        21 ~~l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            478999999999986543     3689999999999999999998 9999999999999999999999999999999999


Q ss_pred             eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc---cCCCcccEEecCCCcc
Q psy10487        137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF---FPTPNLKTLSLDGNPW  213 (610)
Q Consensus       137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~l~l~~N~~  213 (610)
                      ++|.++.+.+..|..+++|+.|+|++|+|..+.+..|..+.+|+.|+|++|+|+.++...|   ..+++|+.|+|++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999999999899999999999999999999998999999999999999999999998877   5689999999999998


Q ss_pred             cc
Q psy10487        214 CC  215 (610)
Q Consensus       214 ~c  215 (610)
                      ..
T Consensus       176 ~~  177 (361)
T 2xot_A          176 KK  177 (361)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.4e-23  Score=202.50  Aligned_cols=184  Identities=20%  Similarity=0.336  Sum_probs=167.7

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCC-Ccccchhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDT  100 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~  100 (610)
                      ..||..|.|.+. +...++|.+  ++++|. ++.++++|+|++|+|+.++...|.  ++++|++|+|++|. +..+.+.+
T Consensus         2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence            369999999861 257899988  999998 999999999999999999998888  79999999999997 99999999


Q ss_pred             hcCCCCCcEEEccC-CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc---EEEccCc-cccccCHHHhhc
Q psy10487        101 FKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK---TIELQHC-QIHSVHKDALIH  175 (610)
Q Consensus       101 f~~l~~L~~LdLs~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~  175 (610)
                      |.++++|++|+|++ |+|..+++..|.++++|++|+|++|.++.++.  |..+.+|+   .|++++| ++..+.+..|..
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence            99999999999998 99999999999999999999999999999765  88888888   9999999 999998888999


Q ss_pred             Ccccc-ccccccccccccCcccccCCCcccEEecCCCc-cc
Q psy10487        176 LTALE-SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP-WC  214 (610)
Q Consensus       176 l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~-~~  214 (610)
                      +.+|+ .|++++|+++.++...|.. .+|+.|++++|+ +.
T Consensus       154 l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT  193 (239)
T ss_dssp             TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC
T ss_pred             hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc
Confidence            99999 9999999999998887766 789999999995 54

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.6e-23  Score=214.62  Aligned_cols=186  Identities=25%  Similarity=0.397  Sum_probs=170.9

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .|+..|.|.|.   ..++|++++++++|..++.++++|+|++|.|+.++...|.  ++++|++|+|++|.+..+.+.+|.
T Consensus        23 ~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~   97 (353)
T 2z80_A           23 SNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFS   97 (353)
T ss_dssp             ----CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcC
Confidence            47888999984   4599999999999999999999999999999999988887  799999999999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCc-cccccCHHHhhcCcccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHC-QIHSVHKDALIHLTALE  180 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  180 (610)
                      ++++|++|+|++|+|..+++..|.++++|++|+|++|.++.++. ..|..+++|+.|++++| .+..+.+..|..+++|+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            99999999999999999999889999999999999999999887 67999999999999999 58888888899999999


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      .|++++|.+..+.+..+..+++|+.|++++|.+
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            999999999999888899999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=210.93  Aligned_cols=227  Identities=22%  Similarity=0.378  Sum_probs=163.2

Q ss_pred             HhccCCCCCCCCCCCCeeCccC------------CCcEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCChhhhcc
Q psy10487         13 LGTTGSPDWTDCPDTCRCKWTL------------GKKSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTKEAFKS   77 (610)
Q Consensus        13 ~~~~~~~~~~~Cp~~C~C~~~~------------~~~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~~~~~~   77 (610)
                      ..+.++...+.||..|.|+-+.            .-+.++..+++++.+|. .+  ..+|++|+|++|.|+.+.+..|. 
T Consensus        19 ~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-   97 (353)
T 2z80_A           19 KEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-   97 (353)
T ss_dssp             --------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred             CccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-
Confidence            3444567778999988876421            23678999999998886 33  35789999999999888888787 


Q ss_pred             cCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCcEEEeeCc-cccccCcCcCCCCCCc
Q psy10487         78 IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ-DTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYL  155 (610)
Q Consensus        78 ~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L  155 (610)
                       ++++|++|+|++|.++.+.+.+|.++++|++|+|++|++..++. ..|..+++|++|+|++| .+..+.+..|.++++|
T Consensus        98 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A           98 -SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             -TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             -CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence             68888999998888888888778888888888888888887776 56777777777777776 3555544444444444


Q ss_pred             cEEEccCccccccCH-----------------------------------------------------------------
Q psy10487        156 KTIELQHCQIHSVHK-----------------------------------------------------------------  170 (610)
Q Consensus       156 ~~L~L~~n~l~~~~~-----------------------------------------------------------------  170 (610)
                      +.|++++|++..+.+                                                                 
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            444444443332211                                                                 


Q ss_pred             --------------HHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC-CCC
Q psy10487        171 --------------DALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL-YSH  234 (610)
Q Consensus       171 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l-~~~  234 (610)
                                    ..+..+++|+.|++++|+++.++...|..+++|+.|++++|+|.|+|. +.++..|...... ...
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~  336 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG  336 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEES
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCC
Confidence                          123455678888888888888888778889999999999999999996 8888999886442 234


Q ss_pred             CCCCCCC
Q psy10487        235 PLSCTEP  241 (610)
Q Consensus       235 ~~~C~a~  241 (610)
                      .+.|..+
T Consensus       337 ~~~C~~p  343 (353)
T 2z80_A          337 SAKCSGS  343 (353)
T ss_dssp             CCBBTTT
T ss_pred             CcccCCC
Confidence            6788776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=1.9e-23  Score=224.20  Aligned_cols=155  Identities=25%  Similarity=0.266  Sum_probs=135.4

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      ....++.+++.++.++....     .+|++|+|++|+|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcCccCCCCC-----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            34578888999999886543     4899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCCcccEEecCCCccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      |++|.++.+....|..+++|+.|+|++|+|..+....|.++++|+.|++++ |.+..++...|..+++|+.|++++|.+.
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            999999999999999999999999999999999887888888888888887 6677777667777777777777777665


Q ss_pred             c
Q psy10487        215 C  215 (610)
Q Consensus       215 c  215 (610)
                      .
T Consensus       210 ~  210 (452)
T 3zyi_A          210 D  210 (452)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=9.7e-23  Score=227.79  Aligned_cols=187  Identities=24%  Similarity=0.302  Sum_probs=166.3

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      |...|.|...  ...++|.+.+|++||..+|.++++|||++|+|+.+++..|.  ++++|++|+|++|+|+.+++++|.+
T Consensus        23 ~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           23 SWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             --CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcC
Confidence            3356777653  57899999999999999999999999999999999999998  8999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcccccc
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESL  182 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  182 (610)
                      +++|++|+|++|+|+.+++..|.++.+|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+. +..+..+.+|+.|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            999999999999999999999999999999999999999999989999999999999999998764 5677889999999


Q ss_pred             ccccccccccCcccccCCCcc----cEEecCCCccc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNL----KTLSLDGNPWC  214 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L----~~l~l~~N~~~  214 (610)
                      ++++|+++.+....+..+.++    ..++++.|.+.
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            999999999887666544433    35677777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=2.4e-23  Score=222.64  Aligned_cols=153  Identities=25%  Similarity=0.288  Sum_probs=135.5

Q ss_pred             ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487         57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL  136 (610)
Q Consensus        57 L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L  136 (610)
                      ...++.+++.++.++....     .+|+.|+|++|+|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4578889999999997653     48999999999999999999999999999999999999999999999999999999


Q ss_pred             eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCCcccEEecCCCccc
Q psy10487        137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ++|.++.+....|..+++|+.|+|++|+|..+.+..|..+++|+.|+|++ |.+..++...|..+++|+.|++++|.+.
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            99999999998999999999999999999999887888888888888887 5666777767777777777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=6.2e-21  Score=190.23  Aligned_cols=188  Identities=28%  Similarity=0.458  Sum_probs=170.3

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.+++.+.+++.++. ....+|++|+|++|.|+.++  .+.  .+++|++|+|++|.+..+.+..|..+++|++|+|++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            3678888888888873 22468999999999999874  555  789999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |++..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.++++++
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99999999989999999999999999999998889999999999999999999988888999999999999999999999


Q ss_pred             ccccCCCcccEEecCCCcccccCC-chhhHHHHh
Q psy10487        195 SVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLL  227 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~  227 (610)
                      ..+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence            889999999999999999999996 566665654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=3.3e-21  Score=215.32  Aligned_cols=212  Identities=18%  Similarity=0.284  Sum_probs=179.0

Q ss_pred             EEcCCCCCCccCccc--CCCccEEEeecCCCCCCC-hhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         39 ALCKDANFTALPSTL--DSDIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        39 ~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~-~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      +++...+...++..+  ..+++.+++.++++.... ...|.  ++.+|+.++++.|.+..+.+..|..+..|++|+|++|
T Consensus       402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             hhccccccccccccccccccccchhhhhccccccccccccc--cccccccccccccccccccccccccchhhhhhhhhhc
Confidence            334444443333332  246777888777654443 34555  7889999999999999999999999999999999999


Q ss_pred             CC-CCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        116 QI-AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       116 ~l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      ++ ..+.+..|..+++|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            74 55677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-CcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccc
Q psy10487        195 SVFFPT-PNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDV  252 (610)
Q Consensus       195 ~~~~~~-~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v  252 (610)
                      ..+..+ .+|+.|++++|+|.|||++.||..|++...   .+...++|..|..++|+.+.++
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~  621 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL  621 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence            888887 689999999999999999999999998654   3456789999999998877665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=1.5e-21  Score=217.44  Aligned_cols=216  Identities=19%  Similarity=0.276  Sum_probs=173.7

Q ss_pred             cEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..+++++.+|..+.  .+|+.|+|++|.+..+.+ ..|.  ++++|++|++++|.+....+..|..+++|++|+|+
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            556677777777775543  478889999988887766 5666  78899999999999999888889999999999999


Q ss_pred             CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +|++.. +.+..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|++..+.+..|..+++|+.|+|++|+++.+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence            999987 4567899999999999999999999988899999999999999999999889999999999999999999988


Q ss_pred             CcccccCCC-cccEEecCCCcccccCCchhhHHHHhhccC---CCCCCCCCCCCccCCCcccccccc
Q psy10487        193 SESVFFPTP-NLKTLSLDGNPWCCDCHLRSFRNWLLKSKL---YSHPLSCTEPGMLQTKHWDDVKAQ  255 (610)
Q Consensus       193 ~~~~~~~~~-~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l---~~~~~~C~a~~~l~g~~~~~v~~~  255 (610)
                      +.. +..++ +|+.|++++|+|.|+|.+.||..|+.....   +...+.|..|..+.|..+.++...
T Consensus       537 p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~  602 (606)
T 3vq2_A          537 KGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS  602 (606)
T ss_dssp             ESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC----------------
T ss_pred             CHh-HhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc
Confidence            876 66776 599999999999999999999999876432   446789999988888887766543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=3.2e-21  Score=214.74  Aligned_cols=189  Identities=21%  Similarity=0.312  Sum_probs=171.9

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .|+..|.|...  ...++|.+.+++++|..++.++++|+|++|.|+.+.+..|.  ++++|++|+|++|.+..+.+.+|.
T Consensus         3 ~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A            3 SSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             ---CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTTT
T ss_pred             cccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhcc
Confidence            47888999754  46899999999999999999999999999999999998898  899999999999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      ++++|++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+....+..+++|+.|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            99999999999999999999999999999999999999999988889999999999999999998765556668999999


Q ss_pred             ccccccccccCcccccCCCccc--EEecCCCcccc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLK--TLSLDGNPWCC  215 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~--~l~l~~N~~~c  215 (610)
                      ++++|.++.+.+..+..+.+|+  .|++++|.+..
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            9999999999888888888888  88999998654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.4e-21  Score=197.92  Aligned_cols=168  Identities=23%  Similarity=0.403  Sum_probs=128.7

Q ss_pred             CCCC-CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCc-ccchhhh
Q psy10487         24 CPDT-CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDTF  101 (610)
Q Consensus        24 Cp~~-C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~f  101 (610)
                      ||+. |+|.+    ..|+|.+++|++||..++.++++|+|++|+|+.++.++|.  ++++|++|+|++|.+. .++.++|
T Consensus         2 Cp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f   75 (350)
T 4ay9_X            2 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   75 (350)
T ss_dssp             CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSB
T ss_pred             CCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHh
Confidence            8875 99985    5899999999999999999999999999999999999998  8999999999999974 5777899


Q ss_pred             cCCCCCcE-EEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccC-ccccccCHHHhhcCc-c
Q psy10487        102 KYLTILVE-VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH-CQIHSVHKDALIHLT-A  178 (610)
Q Consensus       102 ~~l~~L~~-LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~  178 (610)
                      .++++|++ +++++|+|..++++.|.++++|++|++++|.++.+....+....++..|++.+ +++..+....|..+. .
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~  155 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  155 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence            99998876 56677999999999999999999999999998877665554444444454432 344444444443332 3


Q ss_pred             ccccccccccccccCcccc
Q psy10487        179 LESLNLNGNRLKHLSESVF  197 (610)
Q Consensus       179 L~~L~L~~n~l~~~~~~~~  197 (610)
                      ++.|+|++|+|+.++...|
T Consensus       156 l~~L~L~~N~i~~i~~~~f  174 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNSAF  174 (350)
T ss_dssp             CEEEECCSSCCCEECTTSS
T ss_pred             hhhhccccccccCCChhhc
Confidence            4444455544444444333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=2e-21  Score=219.40  Aligned_cols=183  Identities=26%  Similarity=0.350  Sum_probs=130.0

Q ss_pred             CCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc--------ccccCCCCCcEEEeeCccccccCcCcCC
Q psy10487         79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ--------DTFLGNDRLKVLYLNGNPITELRAGQFP  150 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~--------~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  150 (610)
                      ++.+|+.|+|++|.|..+++.+|.++++|++|+|++|++..+..        ..|.++++|+.|+|++|.++.++...|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            56788888888888888888888888888888888888876532        2367888899999999998888888889


Q ss_pred             CCCCccEEEccCccccccCHHHhhcCccccccccccccccccCccccc-CCCcccEEecCCCcccccCCc-hhhHHHHhh
Q psy10487        151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF-PTPNLKTLSLDGNPWCCDCHL-RSFRNWLLK  228 (610)
Q Consensus       151 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~N~~~c~c~l-~~~~~~l~~  228 (610)
                      ++++|+.|+|++|+|+.+++..|..+.+|+.|+|++|+++.+++..+. .+++|+.+++++|+|.|+|.. .||..|+..
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~  637 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE  637 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHh
Confidence            999999999999999999888888899999999999999999887776 678999999999999999996 999999865


Q ss_pred             ccC----CCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487        229 SKL----YSHPLSCTEPGMLQTKHWDDVKAQEFACPP  261 (610)
Q Consensus       229 ~~l----~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P  261 (610)
                      ...    ....+.|..|..+.|+.+.++......|.+
T Consensus       638 ~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~  674 (680)
T 1ziw_A          638 THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA  674 (680)
T ss_dssp             C------------------------------------
T ss_pred             cCcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence            432    135689999999999999888887766554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1.2e-20  Score=193.88  Aligned_cols=179  Identities=28%  Similarity=0.460  Sum_probs=155.5

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .||..|.|.+    +.++|.+.+++++|..++.+++.|+|++|.|+.+.+..|.  ++++|++|+|++|.+..+.+.+|.
T Consensus        26 ~cp~~c~c~l----~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~   99 (332)
T 2ft3_A           26 MCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFS   99 (332)
T ss_dssp             CCCSSCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGST
T ss_pred             CCCCCCcccC----CEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHhh
Confidence            7999999986    5899999999999999999999999999999999988888  799999999999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccc--cCHHHhhcCcccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHS--VHKDALIHLTALE  180 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~  180 (610)
                      ++++|++|+|++|++..++...+   ++|++|+|++|.++.+....|.++++|+.|++++|.+..  +.+..|..+ +|+
T Consensus       100 ~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             CcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            99999999999999998887654   789999999999999988889999999999999999864  555666666 788


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .|++++|+++.++...+   ++|+.|++++|.+.
T Consensus       176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCC
T ss_pred             EEECcCCCCCccCcccc---CCCCEEECCCCcCC
Confidence            88888888777765433   46677777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=7.9e-21  Score=203.83  Aligned_cols=184  Identities=22%  Similarity=0.354  Sum_probs=155.9

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCc-ccchhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDT  100 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~  100 (610)
                      .+||..|.|.+    ..++|.+.+++++|. ++.++++|+|++|.|+.+.+..|.  ++++|++|+|++|.+. .+.+.+
T Consensus         2 ~p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~   74 (455)
T 3v47_A            2 DPGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT   74 (455)
T ss_dssp             -----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred             CCccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence            46889999974    589999999999997 999999999999999999888888  7999999999999987 677888


Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc--cCcCcCCCCCCccEEEccCccccccCHHH-hhcCc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE--LRAGQFPKLPYLKTIELQHCQIHSVHKDA-LIHLT  177 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~  177 (610)
                      |.++++|++|+|++|++..+.+..|.++++|++|+|++|.++.  .....|..+++|+.|+|++|++..+.+.. |.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            9999999999999999999989999999999999999999987  33455889999999999999999986655 78999


Q ss_pred             cccccccccccccccCcccccCC--CcccEEecCCCc
Q psy10487        178 ALESLNLNGNRLKHLSESVFFPT--PNLKTLSLDGNP  212 (610)
Q Consensus       178 ~L~~L~L~~n~l~~~~~~~~~~~--~~L~~l~l~~N~  212 (610)
                      +|+.|++++|.+..+.+..+..+  .+|+.+++.+|.
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~  191 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT  191 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence            99999999999998877655544  334444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=3.4e-20  Score=190.26  Aligned_cols=180  Identities=29%  Similarity=0.476  Sum_probs=159.6

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .||..|.|.+    +.++|.+.+++.+|..++.++++|+|++|.|+.++...|.  ++++|++|+|++|.+..+.+.+|.
T Consensus        24 ~cp~~c~c~l----~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~   97 (330)
T 1xku_A           24 VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFA   97 (330)
T ss_dssp             CCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CCCCCCcCCC----eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhc
Confidence            7999999986    5899999999999999999999999999999999998887  799999999999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccc--cCHHHhhcCcccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHS--VHKDALIHLTALE  180 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~  180 (610)
                      .+++|++|+|++|+|..++...+   ++|++|+|++|.++.+....|.++++|+.|++++|.+..  +.+..|..+++|+
T Consensus        98 ~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             CCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            99999999999999998876544   789999999999999888788899999999999998864  5567788888999


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .|++++|.++.++...+   ++|+.|++++|.+.
T Consensus       175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~  205 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP---PSLTELHLDGNKIT  205 (330)
T ss_dssp             EEECCSSCCCSCCSSCC---TTCSEEECTTSCCC
T ss_pred             EEECCCCccccCCcccc---ccCCEEECCCCcCC
Confidence            99999998888776443   57888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=1.4e-20  Score=209.50  Aligned_cols=215  Identities=21%  Similarity=0.323  Sum_probs=169.4

Q ss_pred             cEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      +.++..++++..++. .+  ..+|+.|+|++|.+....+ ..|.  ++++|+.|++++|.+..+.+..|..+++|++|+|
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT--TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh--CcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            345555555554432 22  2356777777776665543 2354  5777888888888877777777888888888888


Q ss_pred             cCCCCCCC---CcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccc
Q psy10487        113 SDNQIAWL---HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL  189 (610)
Q Consensus       113 s~n~l~~l---~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  189 (610)
                      ++|++...   ....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|.++.+| .|++++|++
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            88887652   23557788888888888888888888889999999999999999999888889999999 999999999


Q ss_pred             cccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccccc
Q psy10487        190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDVKA  254 (610)
Q Consensus       190 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v~~  254 (610)
                      +.+.+..+..+++|+.|++++|+|.|+|...||..|+....   .+...+.|..|..+.|..+.++..
T Consensus       536 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             CCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             cccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            99988888889999999999999999999999999998643   245678999999999988877754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=2.7e-20  Score=207.24  Aligned_cols=183  Identities=21%  Similarity=0.276  Sum_probs=164.5

Q ss_pred             CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487         28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL  107 (610)
Q Consensus        28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L  107 (610)
                      |.|...  ...++|.+.+++++|..++.++++|+|++|.|+.+++..|.  ++++|++|+|++|.+..+.+.+|.++++|
T Consensus         7 c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A            7 CIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             CEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ceecCC--CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            677433  46899999999999999999999999999999999998898  89999999999999999999999999999


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcccccccccc
Q psy10487        108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNG  186 (610)
Q Consensus       108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~  186 (610)
                      ++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+. +..|.++++|+.|++++
T Consensus        83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            99999999999999999999999999999999999999888999999999999999998754 67899999999999999


Q ss_pred             ccccccCcccccCCCccc----EEecCCCccc
Q psy10487        187 NRLKHLSESVFFPTPNLK----TLSLDGNPWC  214 (610)
Q Consensus       187 n~l~~~~~~~~~~~~~L~----~l~l~~N~~~  214 (610)
                      |.++.+.+..+..+.+|+    .+++++|.+.
T Consensus       163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             SCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred             CcceecChhhhhhhhccccccceeeccCCCcc
Confidence            999988776666555443    6777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.82  E-value=9.6e-20  Score=169.21  Aligned_cols=140  Identities=26%  Similarity=0.439  Sum_probs=126.5

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      ||..|.|.|    ..++|.+++++++|..++.+++.|+|++|.|+.++...|.  ++.+|++|+|++|.|..+.+..|..
T Consensus         1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence            999999987    5899999999999999999999999999999999988887  7889999999999999998888899


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                      +++|++|+|++|+|+.+++..|..+++|++|+|++|.++.++...|..+++|+.|+|++|.+....
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999999999999999998888888999999999999999888877888888888888888877653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=9.1e-20  Score=199.07  Aligned_cols=201  Identities=23%  Similarity=0.413  Sum_probs=168.7

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch--hhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~LdLs  113 (610)
                      +.++..++++..++. .-..+|++|+|++|.|+...+..+.  ++++|++|+|++|.+..+..  ..|..+++|++|+|+
T Consensus       305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            455555666655542 3456899999999999987777776  78999999999999997543  678999999999999


Q ss_pred             CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +|++.. ++...|..+++|+.|+|++|.++...+..+.  ++|+.|+|++|+|+.++.. +..+++|+.|+|++|+++.+
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l  459 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSV  459 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCcc
Confidence            999998 7777789999999999999999876554443  7999999999999988654 45899999999999999999


Q ss_pred             CcccccCCCcccEEecCCCcccccCCchhh-HHHHhhcc-CCCCCCCCCCCC
Q psy10487        193 SESVFFPTPNLKTLSLDGNPWCCDCHLRSF-RNWLLKSK-LYSHPLSCTEPG  242 (610)
Q Consensus       193 ~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~-~~~l~~~~-l~~~~~~C~a~~  242 (610)
                      +...+..+++|+.|++++|+|.|+|.+.|| ..|+.... .....+.|..|.
T Consensus       460 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~  511 (520)
T 2z7x_B          460 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  511 (520)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred             CHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence            888788999999999999999999999999 89987543 355778998873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=4.9e-20  Score=203.45  Aligned_cols=185  Identities=24%  Similarity=0.308  Sum_probs=169.7

Q ss_pred             CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      .|+|...  ...++|.+.+++++|..++.+++.|+|++|.|+.+....|.  ++++|++|+|++|.+..+.+.+|.++++
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~   77 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH   77 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchh
Confidence            5787754  57899999999999999999999999999999999988888  7999999999999999999999999999


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLN  185 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  185 (610)
                      |++|+|++|++..+++..|.++++|++|+|++|.++.+....|.++++|+.|+|++|.+..+. +..|.++++|+.|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            999999999999999999999999999999999999998878999999999999999999854 6789999999999999


Q ss_pred             cccccccCcccccCCCcc----cEEecCCCcccc
Q psy10487        186 GNRLKHLSESVFFPTPNL----KTLSLDGNPWCC  215 (610)
Q Consensus       186 ~n~l~~~~~~~~~~~~~L----~~l~l~~N~~~c  215 (610)
                      +|.++.+....+..+.+|    ..+++++|.+..
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCcee
Confidence            999999888777777777    788999887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=8.8e-20  Score=195.67  Aligned_cols=162  Identities=24%  Similarity=0.434  Sum_probs=147.9

Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEE
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE  159 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  159 (610)
                      ..+|+.|+|++|.+..+.+..|..+++|++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|..+++|+.|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCC
Q psy10487        160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLS  237 (610)
Q Consensus       160 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~  237 (610)
                      |++|++..+.+..|..+++|+.|+|++|+++.++...|..+++|+.|++++|+|.|+|. +.|+..|+.... .......
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~  433 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK  433 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCB
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeee
Confidence            99999999988899999999999999999999999888999999999999999999998 788889997543 2344566


Q ss_pred             CCCC
Q psy10487        238 CTEP  241 (610)
Q Consensus       238 C~a~  241 (610)
                      |..+
T Consensus       434 c~~~  437 (455)
T 3v47_A          434 CSGS  437 (455)
T ss_dssp             BTTT
T ss_pred             ecCC
Confidence            7654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=3e-19  Score=196.87  Aligned_cols=199  Identities=26%  Similarity=0.385  Sum_probs=166.0

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch--hhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~LdLs  113 (610)
                      +.++..++++..++. ....+|++|+|++|.|+...+..|.  ++++|++|+|++|.+..++.  ..|..+++|++|+|+
T Consensus       334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            455556666655542 3456899999999999987777777  79999999999999998763  568999999999999


Q ss_pred             CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +|++.. ++...|.++++|+.|+|++|.++...+..+.  ++|+.|+|++|+|+.++...+ .+++|+.|+|++|+++.+
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCC
Confidence            999998 8878899999999999999999876554443  699999999999999866554 899999999999999999


Q ss_pred             CcccccCCCcccEEecCCCcccccCCchhhHH-HHhhccC---------CCCCCCCCC
Q psy10487        193 SESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN-WLLKSKL---------YSHPLSCTE  240 (610)
Q Consensus       193 ~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~-~l~~~~l---------~~~~~~C~a  240 (610)
                      +...+..+++|+.|++++|+|.|+|.+.||.. |......         ....+.|..
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             CTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             CHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            98878899999999999999999999999966 8764432         234677765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=1.2e-19  Score=204.78  Aligned_cols=183  Identities=25%  Similarity=0.370  Sum_probs=164.2

Q ss_pred             CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      .|.|.+    ..++|++.+++++|..++.++++|+|++|.|+.+++..|.  ++++|++|+|++|.+..+.+.+|+++++
T Consensus         1 ~C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            1 KCTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM   74 (680)
T ss_dssp             ---CBS----SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred             CceeEC----CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence            377774    5899999999999999999999999999999999999898  7899999999999999999999999999


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG  186 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  186 (610)
                      |++|+|++|++..+++..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+.+..|.++++|+.|++++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            99999999999999988899999999999999999999888899999999999999999988888888899999999999


Q ss_pred             ccccccCccccc--CCCcccEEecCCCcccc
Q psy10487        187 NRLKHLSESVFF--PTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       187 n~l~~~~~~~~~--~~~~L~~l~l~~N~~~c  215 (610)
                      |.++.+....+.  .+++|+.|++++|.+..
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CcccccCHHHhhccccccccEEECCCCcccc
Confidence            999888776543  45789999999987654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.80  E-value=1.1e-19  Score=200.64  Aligned_cols=206  Identities=18%  Similarity=0.186  Sum_probs=143.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.|..+.... .... .+..+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+....
T Consensus       357 ~D~G~Y~C~a~N~~g~~~~-~~~l-~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~  434 (570)
T 3b43_A          357 EDSGDYTCEAHNAAGSASS-STSL-KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM  434 (570)
T ss_dssp             GGCEEEEEEEEBTTBCCEE-EEEE-CEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEE
T ss_pred             ccCEEEEEEEEeCCCEEEE-EEEE-EecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEE
Confidence            3677899999887654322 1211 2235788877888888899999999999999999999999999988765532222


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG  390 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (610)
                      .++.      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..   +|.+...+....+..+..           
T Consensus       435 ~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~---~P~~~~~~~~~~~~~g~~-----------  494 (570)
T 3b43_A          435 SENF------LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA---PPRFVKKLSDISTVVGEE-----------  494 (570)
T ss_dssp             EETT------EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC---CCEEEECCCCBCCBTTCC-----------
T ss_pred             EcCC------EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc---CCcccccCCCceecCCCe-----------
Confidence            2111      24899999999999999999999999999999998843   445544443333222221           


Q ss_pred             eEEEEEEeee--cccccccccCCc----ccc--ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        391 MSFCVCRAHE--HKNKRRKRKGKM----KQS--VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       391 ~~~~~~~~~~--~~~~~~~~~~~~----~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                       +.+.|...+  .+...|.+.+..    ...  +...+....|.|.+++.+|+|.|+|.|.|..|.++..+.|.|.|
T Consensus       495 -~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e  570 (570)
T 3b43_A          495 -VQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE  570 (570)
T ss_dssp             -EEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             -EEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence             122333333  233344332210    111  11223456899999999999999999999999999999998864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=2.1e-19  Score=197.58  Aligned_cols=181  Identities=28%  Similarity=0.421  Sum_probs=164.3

Q ss_pred             CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487         28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL  107 (610)
Q Consensus        28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L  107 (610)
                      |.|.|.   ..++|++++++++|..++.++++|+|++|+|+.+.+..|.  ++++|++|+|++|.+..+.+.+|.++++|
T Consensus         2 ~~C~~~---~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            2 LSCDAS---GVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             CEECTT---SEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCC---ceEECCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccC
Confidence            456663   2467889999999999999999999999999999888887  79999999999999999999999999999


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccccc
Q psy10487        108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLNLN  185 (610)
Q Consensus       108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  185 (610)
                      ++|+|++|++..+++..|.++++|++|+|++|.++.+. +..|.++++|+.|++++|+ +..+++..|.++++|+.|+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            99999999999999999999999999999999999763 4578999999999999998 777777789999999999999


Q ss_pred             cccccccCcccccCCCcccEEecCCCcc
Q psy10487        186 GNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      +|.+++..+..+..+++|+.|++.+|..
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCcccccChhhhhccccCceEecccCcc
Confidence            9999998888888899999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=4.9e-19  Score=172.81  Aligned_cols=175  Identities=17%  Similarity=0.238  Sum_probs=159.6

Q ss_pred             CcEEEcCCCCCCccCcc-c--CCCccEEEeecCC-CCCCChhhhcccCCCCccEEEccc-CCCcccchhhhcCCCCCcEE
Q psy10487         36 KKSALCKDANFTALPST-L--DSDIQVLDLNNNK-ISYLTKEAFKSIGLLNLQRIYLKN-SGIREVHRDTFKYLTILVEV  110 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~-l--~~~L~~L~L~~n~-i~~l~~~~~~~~~l~~L~~L~L~~-n~l~~i~~~~f~~l~~L~~L  110 (610)
                      -+.++..+++++.+|.. +  ..+|++|+|++|. ++.++...|.  ++++|++|+|++ |.++.+++.+|.++++|++|
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            47889999999999873 3  3589999999997 9999998998  799999999998 99999999999999999999


Q ss_pred             EccCCCCCCCCcccccCCCCCc---EEEeeCc-cccccCcCcCCCCCCcc-EEEccCccccccCHHHhhcCccccccccc
Q psy10487        111 DLSDNQIAWLHQDTFLGNDRLK---VLYLNGN-PITELRAGQFPKLPYLK-TIELQHCQIHSVHKDALIHLTALESLNLN  185 (610)
Q Consensus       111 dLs~n~l~~l~~~~f~~l~~L~---~L~Ls~N-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  185 (610)
                      +|++|++..++.  |..+.+|+   .|+|++| .++.+....|.++++|+ .|++++|+++.++...|.. .+|+.|+++
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999999875  88889998   9999999 99999998999999999 9999999999998777766 899999999


Q ss_pred             ccc-ccccCcccccCC-CcccEEecCCCcccc
Q psy10487        186 GNR-LKHLSESVFFPT-PNLKTLSLDGNPWCC  215 (610)
Q Consensus       186 ~n~-l~~~~~~~~~~~-~~L~~l~l~~N~~~c  215 (610)
                      +|+ ++.++...|..+ ++|+.|++++|.+..
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            995 999998889999 999999999998753

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.79  E-value=8.4e-20  Score=201.74  Aligned_cols=241  Identities=16%  Similarity=0.190  Sum_probs=156.6

Q ss_pred             CCCCCCCCCCCCccCCCccc-ccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWD-DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~-~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+..+..... .+.......+|.+......+.+.+|+.++|.|.+.|.|.|.|+|+|+|..+......+.
T Consensus        71 ~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~  150 (570)
T 3b43_A           71 SDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT  150 (570)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEE
T ss_pred             hhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEE
Confidence            46788999988765432211 11112223467777777788888999999999999999999999999998876543222


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI  389 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (610)
                      ....      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+...+|.+...+....+..+..+         
T Consensus       151 ~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~---------  215 (570)
T 3b43_A          151 SFIH------NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG---------  215 (570)
T ss_dssp             EEET------TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCE---------
T ss_pred             EEEC------CEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeE---------
Confidence            2111      2358999999999999999999999999988888888655555555544443333222221         


Q ss_pred             eeEEEEEEeeecc--cccccccCCc---ccc--ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487        390 GMSFCVCRAHEHK--NKRRKRKGKM---KQS--VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP  462 (610)
Q Consensus       390 ~~~~~~~~~~~~~--~~~~~~~~~~---~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp  462 (610)
                         .+.|...+.+  ...|.+.+..   ...  +........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|.
T Consensus       216 ---~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  292 (570)
T 3b43_A          216 ---TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR  292 (570)
T ss_dssp             ---EEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCE
T ss_pred             ---EEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCc
Confidence               2233333322  2233322211   111  11223456899999999999999999999999999999998876543


Q ss_pred             cceeEec----CCCC----Cc-ccccCCCc-ccccCC
Q psy10487        463 VHITIES----HAVD----PQ-VSVFPPPP-EFSSNH  489 (610)
Q Consensus       463 ~~i~ie~----~~~~----~l-~~~~P~pp-ef~~~~  489 (610)
                      .....+.    ..++    .| +.++|+|. .|..+-
T Consensus       293 ~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~  329 (570)
T 3b43_A          293 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE  329 (570)
T ss_dssp             EEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETT
T ss_pred             ccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECC
Confidence            2111111    0112    23 66777766 676543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.78  E-value=1.1e-19  Score=170.60  Aligned_cols=183  Identities=19%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.............    .....|.|.+++.+|+|.|+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS----DGRAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE----TTEEEEEESSCCGGGCEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC----CCEEEEEECCCCcccCEEEE
Confidence            46788888889999999999999999999999999999998876654211111100    11358999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc---c
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM---K  413 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~  413 (610)
                      |.|.|..|.....+.|.|.....+|.+...+....+..+..            +.+.|...+  .+...|.+.+..   .
T Consensus        80 C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~~~v~W~~~~~~~~~~  147 (194)
T 2a38_A           80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ------------VRLQVRVTGIPTPVVKFYRDGAEIQSS  147 (194)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEE------------EEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred             EEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCE------------EEEEEEEEEecCCeEEEEECCEECCCC
Confidence            99999999988888888865445555544444333322222            123333333  233333332211   1


Q ss_pred             cccccc--ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        414 QSVSFN--DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       414 ~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ......  .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          148 LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            111111  12227999999999999999999999999888877765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.78  E-value=4.4e-18  Score=185.76  Aligned_cols=242  Identities=13%  Similarity=0.147  Sum_probs=152.2

Q ss_pred             CCCC-CCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEe--cc
Q psy10487        231 LYSH-PLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVL--HN  303 (610)
Q Consensus       231 l~~~-~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l--~~  303 (610)
                      .+.+ .|+|.+.+..+......+.....   ..+|.+...+....+.+|+.++|.|.+.|.|.|. +.|++++..+  ..
T Consensus       178 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~  257 (524)
T 2ec8_A          178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE  257 (524)
T ss_dssp             GGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE
T ss_pred             hhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc
Confidence            4667 89999877643332223333222   3678888888888999999999999999999997 9999999873  22


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHH
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVV  383 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~  383 (610)
                      ...  .... .+......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+.............+..+..    
T Consensus       258 ~~~--~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~----  330 (524)
T 2ec8_A          258 KYN--SWHH-GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN----  330 (524)
T ss_dssp             EEE--EEEC-SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCC----
T ss_pred             ccc--cccc-cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCc----
Confidence            111  1111 111224557999999999999999999999999998899998853322111111111222222222    


Q ss_pred             HHHHhheeEEEEEEeeecc--c-ccccccCCcccc----ccccc------cccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        384 SVIVSIGMSFCVCRAHEHK--N-KRRKRKGKMKQS----VSFND------QEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~----~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                              +.+.|...+.+  . ..|.+.+..-..    .....      ....|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       331 --------v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  402 (524)
T 2ec8_A          331 --------VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA  402 (524)
T ss_dssp             --------EEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             --------EEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE
Confidence                    12333333333  3 334332221100    00011      245899999999999999999999999999


Q ss_pred             eeeecccccCCCcceeEecCCCCCc---ccccCCCc-ccccC
Q psy10487        451 LIEQSLAMEQPPVHITIESHAVDPQ---VSVFPPPP-EFSSN  488 (610)
Q Consensus       451 ~~~~l~v~~~pp~~i~ie~~~~~~l---~~~~P~pp-ef~~~  488 (610)
                      ..+.|.|..+|.+....+...+ .|   +.++|+|- .|..+
T Consensus       403 ~~~~l~V~~~P~i~~~~~~~~g-~l~C~~~g~P~p~i~W~~~  443 (524)
T 2ec8_A          403 IAFNVYVNTKPEILTYDRLVNG-MLQCVAAGFPEPTIDWYFC  443 (524)
T ss_dssp             EEEEEEECEEEEEEEEECCSSS-CEEEEEEEESCCEEECCCC
T ss_pred             EEEEEEEecCCeEeecccCcCc-EEEEEEEeecCCEEEEEEC
Confidence            9999988765444333322222 44   77888887 77754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=190.19  Aligned_cols=151  Identities=19%  Similarity=0.265  Sum_probs=132.4

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      +.++.+++.++.++....     .+|+.|+|++|.|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~~ip~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP-----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCcCCCCCC-----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            468889999999986543     489999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      +|.++.++...|.++++|+.|+|++|++..+.+..|..+.+|+.|+|++|.+..+....|..+++|+.|++++|.+
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            9999999988899999999999999999988887888888888888888888777766666666777776666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=7.8e-19  Score=193.59  Aligned_cols=164  Identities=20%  Similarity=0.207  Sum_probs=137.6

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      |+.+|.|..   .+.++|.+++++.+|..++.++++|+|++|.|+.+++..|.  ++++|++|+|++|.|+.+.+++|.+
T Consensus        24 ~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~   98 (562)
T 3a79_B           24 SMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLF   98 (562)
T ss_dssp             ------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             cccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCC
Confidence            445577774   37899999999999999999999999999999999999998  8999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCHHHhhcCccc--c
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL--E  180 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~  180 (610)
                      +++|++|||++|+|+.++..   .+++|++|+|++|.++.+. +..|.++++|+.|+|++|++....   +..+.+|  +
T Consensus        99 l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~  172 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLS  172 (562)
T ss_dssp             CTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEE
T ss_pred             CCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceee
Confidence            99999999999999998865   7899999999999999976 367999999999999999998753   4445555  9


Q ss_pred             ccccccccc--cccCccccc
Q psy10487        181 SLNLNGNRL--KHLSESVFF  198 (610)
Q Consensus       181 ~L~L~~n~l--~~~~~~~~~  198 (610)
                      .|++++|.+  ....+..+.
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~  192 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQ  192 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEE
T ss_pred             EEEeecccccccccCccccc
Confidence            999999988  555444443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.78  E-value=2.2e-19  Score=171.62  Aligned_cols=183  Identities=19%  Similarity=0.237  Sum_probs=122.2

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEec-CCCCCeEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV-TDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y  337 (610)
                      .+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+............+     ....|.|.++ +.+|+|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d~G~Y   79 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG-----SGSVLRIQPLRTPRDEAIY   79 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGG-----TEEEEEECSCCTTTTCEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCC-----CceEEEEeccCCCCCCeEE
Confidence            46888888899999999999999999999999999999999887544322222211     1357999999 59999999


Q ss_pred             EEEeecCCcceeEEEEEEcCcccc----ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCC
Q psy10487        338 TCYAENIRGNASGEISLDLPEINL----ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGK  411 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  411 (610)
                      +|.|.|..|.....+.|.|.....    .|.+...+....+..+..            +.+.|...+.+  ...|.+.+.
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~------------v~l~C~~~g~p~p~v~W~~~g~  147 (212)
T 2yd6_A           80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT------------ATMLCAASGNPDPEITWFKDFL  147 (212)
T ss_dssp             EEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSC------------EEEEEEEECSSCCEEEEEETTE
T ss_pred             EEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCC------------EEEEEEecCCCCCeEEEEECCc
Confidence            999999999988888888854321    133333333333222222            12333333322  223332211


Q ss_pred             cc------cccc--ccccccceeeeeeeeccCcceeeeecCCCcceeee-eecccc
Q psy10487        412 MK------QSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAM  458 (610)
Q Consensus       412 ~~------~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~  458 (610)
                      .-      ..+.  .......|.|.+++.+|+|.|+|.|.|..|....+ +.|.+.
T Consensus       148 ~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          148 PVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            10      1111  11234789999999999999999999999987654 444443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.77  E-value=5.8e-19  Score=168.61  Aligned_cols=185  Identities=19%  Similarity=0.248  Sum_probs=123.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y  337 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+    ....|.|.+++. +|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG----GISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETT----TEEEEEESSCCTTTTCSEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCC----CeEEEEEEecCCCCcCceE
Confidence            478889999999999999999999999999999999999998863322222111111    125899999999 999999


Q ss_pred             EEEeecCCcc-eeEEEEEEcCcccc----ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccC
Q psy10487        338 TCYAENIRGN-ASGEISLDLPEINL----ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKG  410 (610)
Q Consensus       338 ~C~a~N~~G~-~~~~~~L~V~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  410 (610)
                      +|.|.|..|. .+..+.|.|.....    .|.+...+....+..+..+            .+.|.....+  ...|.+..
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v------------~l~C~~~g~p~p~i~W~~~~  148 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTV------------LMTCKAIGNPTPNIYWIKNQ  148 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCE------------EECCEEECSSCCEEEEEETT
T ss_pred             EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeE------------EEEEEeccCCCCeEEEEECC
Confidence            9999999998 77888888854321    1334333333333222222            2222222222  22222211


Q ss_pred             Ccc--ccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eeccccc
Q psy10487        411 KMK--QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAME  459 (610)
Q Consensus       411 ~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~  459 (610)
                      ..-  ........++.|.|.+++.+|+|.|+|.|.|..|..+.. +.|.|.+
T Consensus       149 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          149 TKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            110  001112335589999999999999999999999998765 6776654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.77  E-value=3.9e-19  Score=167.32  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=123.2

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.............+    ....|.|.+++.+|+|.|+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEECSCCGGGCSEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCC----CEEEEEECcCCHHhCEEEE
Confidence            368888888899999999999999999999999999999998875432222111111    1238999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcccc--ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc---c
Q psy10487        339 CYAENIRGNASGEISLDLPEINL--ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM---K  413 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  413 (610)
                      |.|.|..|.....+.|.|...+.  .|.....+....+..+..+.          +.|.....+.+...|.+....   .
T Consensus        79 C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~----------l~C~~~g~p~p~i~W~~~~~~~~~~  148 (197)
T 2j8h_A           79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS----------IKIPFSGKPDPVITWQKGQDLIDNN  148 (197)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCE----------EEEEEEEESCCEEEEEESSCEECSS
T ss_pred             EEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEE----------EEEEEEecCCCcEEEEECCEEeecC
Confidence            99999999988888888843221  11111111112222111111          122222222223333332211   1


Q ss_pred             ccc--cccccccceeeee-eeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        414 QSV--SFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       414 ~~~--~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ...  ........|.|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       149 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            111  1123456899999 99999999999999999999888888775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=1.1e-18  Score=177.53  Aligned_cols=193  Identities=17%  Similarity=0.286  Sum_probs=140.4

Q ss_pred             CCCCCCCCCCeeCcc----------CCCcEEEcCCCCCC---ccCcccC--CCccEEEeec-CCCCCCChhhhcccCCCC
Q psy10487         19 PDWTDCPDTCRCKWT----------LGKKSALCKDANFT---ALPSTLD--SDIQVLDLNN-NKISYLTKEAFKSIGLLN   82 (610)
Q Consensus        19 ~~~~~Cp~~C~C~~~----------~~~~~~~C~~~~l~---~lP~~l~--~~L~~L~L~~-n~i~~l~~~~~~~~~l~~   82 (610)
                      ..|..-..+|.|.|.          .....++..+.+++   .+|..+.  .+|++|+|++ |.+....+..|.  ++++
T Consensus        25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~  102 (313)
T 1ogq_A           25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQ  102 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTT
T ss_pred             cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCC
Confidence            467544445765563          11234555555665   4665553  4788888884 777765566666  6788


Q ss_pred             ccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCC-CccEEEcc
Q psy10487         83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP-YLKTIELQ  161 (610)
Q Consensus        83 L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~  161 (610)
                      |++|+|++|.+....+..|..+++|++|+|++|++....+..|..+++|++|+|++|.++...+..|..+. +|+.|+|+
T Consensus       103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~  182 (313)
T 1ogq_A          103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence            88888888888866677788888888888888888866667788888888888888888765565677776 78888888


Q ss_pred             CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      +|++....+..|..+. |+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            8888766677777776 888888888888777777778888888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=1.7e-18  Score=190.26  Aligned_cols=200  Identities=19%  Similarity=0.341  Sum_probs=158.0

Q ss_pred             cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChh---hhcccCCCCccEEEcccCCCcccch--hhhcCCCCCc
Q psy10487         37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKE---AFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILV  108 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~---~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~  108 (610)
                      +.++..+++++.+|..+   ..+|++|+|++|.+....+.   .+.  .+++|++|+|++|.++.+..  ..|..+++|+
T Consensus       313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG--AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT--SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh--ccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            56777777888888654   46889999999988764321   233  57889999999998888754  5688889999


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCc-----------------CCCCCCccEEEccCccccccCHH
Q psy10487        109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-----------------FPKLPYLKTIELQHCQIHSVHKD  171 (610)
Q Consensus       109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-----------------~~~l~~L~~L~L~~n~l~~~~~~  171 (610)
                      +|+|++|+++.++. .+..+++|++|+|++|.++.++...                 +..+++|+.|+|++|+|+.++. 
T Consensus       391 ~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-  468 (549)
T 2z81_A          391 SLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-  468 (549)
T ss_dssp             EEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-
T ss_pred             EEECCCCCCccCCh-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-
Confidence            99999999887764 5677788888888888776654321                 1367899999999999998864 


Q ss_pred             HhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCCCCCC
Q psy10487        172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLSCTEP  241 (610)
Q Consensus       172 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~C~a~  241 (610)
                       ...+++|+.|+|++|+++++++..+..+++|+.|++++|+|.|+|. +.++..|+.... ...+.+.|..+
T Consensus       469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~  539 (549)
T 2z81_A          469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  539 (549)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred             -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence             3578999999999999999999889999999999999999999998 577778987543 35567888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=200.94  Aligned_cols=165  Identities=25%  Similarity=0.322  Sum_probs=143.6

Q ss_pred             CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccC-CCcccchhhhcCCC
Q psy10487         27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRDTFKYLT  105 (610)
Q Consensus        27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~  105 (610)
                      .|.|.    ...++|.+.+++.+|. ++.++++|+|++|.|+.+.+..|.  ++.+|++|+|++| .+..+.+.+|.+++
T Consensus         1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~   73 (844)
T 3j0a_A            1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP   73 (844)
T ss_dssp             CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred             CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence            37776    3689999999999998 999999999999999999888888  7999999999999 46677788999999


Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc--CcCCCCCCccEEEccCccccccCH-HHhhcCcccccc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA--GQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESL  182 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  182 (610)
                      +|++|+|++|+|..+.+..|.++.+|++|+|++|.++...+  ..|.++++|+.|+|++|.+..+.+ ..|.++++|+.|
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            99999999999999988999999999999999999987433  348899999999999999988754 568889999999


Q ss_pred             ccccccccccCccccc
Q psy10487        183 NLNGNRLKHLSESVFF  198 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~  198 (610)
                      +|++|.++.+.+..+.
T Consensus       154 ~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELE  169 (844)
T ss_dssp             EEESSCCCCCCSGGGH
T ss_pred             ECCCCcCCeeCHHHcc
Confidence            9999988776554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=199.20  Aligned_cols=214  Identities=30%  Similarity=0.419  Sum_probs=133.3

Q ss_pred             cEEEcCCCCCCccCcc-c--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPST-L--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~-l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..++.+..++.. +  ..+|+.|+|++|.|+.+.+..|.  ++.+|++|+|++|.+..+.+.+|.++++|++|+|+
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            4566666666655432 2  23667777777777766666665  56666777776666666666666666666666666


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccC------------------------------------------------
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELR------------------------------------------------  145 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~------------------------------------------------  145 (610)
                      +|+|..+++..|.++++|+.|+|++|.++.+.                                                
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence            66666666555665666666655555544321                                                


Q ss_pred             ----------------------------------------------cCcCCCCCCccEEEccCccccccCHHHhhcCccc
Q psy10487        146 ----------------------------------------------AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL  179 (610)
Q Consensus       146 ----------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  179 (610)
                                                                    +..|.++++|+.|+|++|+|+.+.+..|..+++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence                                                          0113334445555555555555555555566666


Q ss_pred             cccccccccccccCccccc-------------------CCCcccEEecCCCcccccCCchhhHHHHhhccC----CCCCC
Q psy10487        180 ESLNLNGNRLKHLSESVFF-------------------PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL----YSHPL  236 (610)
Q Consensus       180 ~~L~L~~n~l~~~~~~~~~-------------------~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l----~~~~~  236 (610)
                      +.|+|++|+++.+++..+.                   .+.+|+.+++++|+|.|+|.+.||..|+.....    ....+
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~  586 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI  586 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGC
T ss_pred             heeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccC
Confidence            6666666666655543321                   123567788899999999999999999876442    23467


Q ss_pred             CCCCCCccCCCccccc
Q psy10487        237 SCTEPGMLQTKHWDDV  252 (610)
Q Consensus       237 ~C~a~~~l~g~~~~~v  252 (610)
                      .|..|..+.|..+.++
T Consensus       587 ~C~~p~~~~g~~l~~~  602 (844)
T 3j0a_A          587 YCVYPDSFSGVSLFSL  602 (844)
T ss_dssp             CCSSCSSSCSCCTTTC
T ss_pred             ccCCchhhCCCccccC
Confidence            8998888777665544

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.76  E-value=7.7e-19  Score=164.97  Aligned_cols=183  Identities=16%  Similarity=0.179  Sum_probs=122.6

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............      ....|.|.+++.+|+|.|+
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~   79 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG------RTHTLTVMTEEQEDEGVYT   79 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS------SEEEEEEECCSGGGCEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC------CEEEEEEecCCccCCEEEE
Confidence            4688888888999999999999999999999999999999988655432222111      1248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc---c
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM---K  413 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~  413 (610)
                      |.|.|..|.....+.|.|...+.............+..+..            +.+.|....  .+...|.+....   .
T Consensus        80 C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~------------~~l~C~~~~~p~p~v~W~~~~~~~~~~  147 (197)
T 3lcy_A           80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST------------LRLHVMYIGRPVPAMTWFHGQKLLQNS  147 (197)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSC------------EEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             EEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCe------------EEEEEEEeeeeCCeeEEeECCEECCCC
Confidence            99999999988888888843322211111111111111111            122333333  233333322111   1


Q ss_pred             ccccc--cccccceeeeeeee-ccCcceeeeecCCCcceeeeeeccccc
Q psy10487        414 QSVSF--NDQEKKLLDVSITT-TDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       414 ~~~~~--~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .....  ......|.|.+++. +|+|.|+|.|.|..|..+..+.+.|.+
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            11111  12226799999985 899999999999999999888887765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=189.43  Aligned_cols=234  Identities=12%  Similarity=0.113  Sum_probs=142.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.|..+......+... +..+|.+  .+....+.+|+.+.|.|.+. |.|.|.|+|++++..+........
T Consensus       201 ~d~G~Y~C~A~N~~G~~~~~~~~l~-V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~  277 (527)
T 3qs9_E          201 LFGTDIRCCARNELGRECTRLFTID-LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM  277 (527)
T ss_dssp             CCSSCEEEEEECSSCEEEEECEEEE-SSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEE
T ss_pred             cCCEEEEEEEEeCCCcccceEEEEE-EeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeee
Confidence            4678999999887664433222222 2234444  45678889999999999996 999999999999987765432111


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCC--cceeehhhhHHHHHHHHH
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTD--SWYMLVLGISVCVVSVIV  387 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~  387 (610)
                      .....+......+.|.|.+++.+|+|.|+|.|.|.   ....+.|.|.+.   |.+...+  ....+..+..+.      
T Consensus       278 ~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~---p~i~~~~~~~~~~v~~G~~v~------  345 (527)
T 3qs9_E          278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK---GFINATNSSEDYEIDQYEEFC------  345 (527)
T ss_dssp             EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-----CEEECCCSCCEECCCTTCCCC------
T ss_pred             eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEcc---CccccccCcccEEEcCCCeEE------
Confidence            11111112234568999999999999999999998   677788887432   2222211  111121111111      


Q ss_pred             hheeEEEEEEeeecccccccccCCcc-ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCccee
Q psy10487        388 SIGMSFCVCRAHEHKNKRRKRKGKMK-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHIT  466 (610)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~  466 (610)
                          +.|.....+.+...|.+.+..- ........+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+  .
T Consensus       346 ----L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i--~  419 (527)
T 3qs9_E          346 ----FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--L  419 (527)
T ss_dssp             ----EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEE--E
T ss_pred             ----EEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeE--E
Confidence                2333333333333343322110 00011124567999999999999999999999999999999998865433  2


Q ss_pred             EecCCCC--Cc-ccccCCCc-ccc
Q psy10487        467 IESHAVD--PQ-VSVFPPPP-EFS  486 (610)
Q Consensus       467 ie~~~~~--~l-~~~~P~pp-ef~  486 (610)
                      .... +.  .| +.++|+|- .|.
T Consensus       420 ~~~~-~~~l~C~a~g~P~p~i~W~  442 (527)
T 3qs9_E          420 AEAS-ASQASCFSDGYPLPSWTWK  442 (527)
T ss_dssp             ECCC-CE---EEEECSSCCEEEEE
T ss_pred             EeCC-CCEEEEEEEEEcCCeEEEE
Confidence            2221 12  33 77888766 665

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.76  E-value=1.9e-18  Score=172.54  Aligned_cols=182  Identities=21%  Similarity=0.270  Sum_probs=125.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............      ..+.|.|.+++.+|+|.|+
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~   77 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE------NTATLTVLKVTKGDAGQYT   77 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEET------TEEEEEESSCCGGGCEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcC------CEEEEEEecCCcccCEEEE
Confidence            5788888899999999999999999999999999999999988765432222211      1358999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCc-ceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCcc--
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDS-WYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKMK--  413 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--  413 (610)
                      |.|.|..|..+..+.|.|...   |.+..... ...+..+..            +.+.|...+.  +...|.+.+..-  
T Consensus        78 C~~~n~~g~~~~~~~l~V~~~---p~~~~~~~~~~~v~~g~~------------~~l~C~~~g~p~~~v~W~~~~~~~~~  142 (284)
T 2rik_A           78 CYASNVAGKDSCSAQLGVQEP---PRFIKKLEPSRIVKQDEH------------TRYECKIGGSPEIKVLWYKDETEIQE  142 (284)
T ss_dssp             EEEEETTEEEEEEEEEEEECC---CEEEECCCSEEEEETTCC------------EEEEEEEESSSCCEEEEEETTEECCC
T ss_pred             EEEEECCceEEEEEEEEccCC---CcccccCCCceEecCCce------------EEEEEEEeeeCCCEEEEEECCEECcC
Confidence            999999999988999888432   22222211 111111111            1223333322  222332221110  


Q ss_pred             -c--cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        414 -Q--SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       414 -~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                       .  ..........|.|.+++.+|+|.|+|.|.|..|..+....|.|.++|
T Consensus       143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  193 (284)
T 2rik_A          143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP  193 (284)
T ss_dssp             SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             CCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence             0  11122345679999999999999999999999999888888877643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.76  E-value=3.9e-19  Score=177.59  Aligned_cols=205  Identities=17%  Similarity=0.228  Sum_probs=134.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeee-cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+..+.. ...+... +..+|.+.... ....+.+|+.+.|.|.+.|.|.|.+.|++++..+........
T Consensus        71 ~d~G~Y~C~~~n~~g~~-~~~~~l~-V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  148 (284)
T 2rik_A           71 GDAGQYTCYASNVAGKD-SCSAQLG-VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM  148 (284)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEE-EECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEE
T ss_pred             ccCEEEEEEEEECCceE-EEEEEEE-ccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEE
Confidence            36778999887654321 1222222 23456655443 455688999999999999999999999999998876543222


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI  389 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (610)
                      ....      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+   +|.+...+....+..+..+         
T Consensus       149 ~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v---------  210 (284)
T 2rik_A          149 SFVE------SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE---PPVFRKKPHPVETLKGADV---------  210 (284)
T ss_dssp             EEET------TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---CCBCCSCCCCEEECTTCCE---------
T ss_pred             EEcC------CEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec---CCcceeCCCcceecCCCeE---------
Confidence            2111      235899999999999999999999999999999998843   3444444433333322221         


Q ss_pred             eeEEEEEEeeecc--cccccccCCc---ccccc--ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        390 GMSFCVCRAHEHK--NKRRKRKGKM---KQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       390 ~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                         .+.|...+.+  ...|.+.+..   .....  .......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       211 ---~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          211 ---HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             ---EEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ---EEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence               2233333222  2222221110   11111  11223579999999999999999999999999988887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=190.88  Aligned_cols=201  Identities=23%  Similarity=0.440  Sum_probs=165.7

Q ss_pred             cEEEcCCCCCCcc---Cccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-hhhcCCCCCcEE
Q psy10487         37 KSALCKDANFTAL---PSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEV  110 (610)
Q Consensus        37 ~~~~C~~~~l~~l---P~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L  110 (610)
                      +.++..+++++.+   |..+  ..+|++|+|++|.+..++.. |.  ++++|++|++++|.+..+.+ ..|..+++|++|
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            4566666666544   2222  24677888888877776655 55  68888888888888877655 568899999999


Q ss_pred             EccCCCCCCCCcccccCCCCCcEEEeeCcccc-ccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccc
Q psy10487        111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT-ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL  189 (610)
Q Consensus       111 dLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  189 (610)
                      +|++|++....+..|.++++|+.|+|++|.++ ...+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|++
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            99999999888888999999999999999997 34456789999999999999999999888999999999999999999


Q ss_pred             cccCcccccCCCcccEEecCCCcccccCCchhhH-HHHhhcc--CCCCCCCCCCC
Q psy10487        190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFR-NWLLKSK--LYSHPLSCTEP  241 (610)
Q Consensus       190 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~-~~l~~~~--l~~~~~~C~a~  241 (610)
                      +++++..|..+++|+.|++++|+|.|+|...++. .|+....  +.... .|..+
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~  560 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS  560 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence            9999888999999999999999999999999887 9988643  22223 88776

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.76  E-value=6.3e-18  Score=158.93  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=121.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCc--cceee-ccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSF--DLLEE-EEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~--~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      +|.+...+..+.+.+|++++|.|.+. |.|.|.+.|+++|..+.....  .+... .++.......+.|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            57788889999999999999999999 999999999999999876532  11111 111122223579999999999999


Q ss_pred             EEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487        336 EYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ  414 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (610)
                      .|+|.|.|..|.... .+.|.|..   +|.+...+....+..+..            +.+.|...+.+......|.+.+.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~~v~W~~~~~  146 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANTP------------FNLSCQAQGPPEPVDLLWLQDAV  146 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC---SCEEEECCCCEEECTTCC------------EEEEEEEECSSCCCEEEEEESSC
T ss_pred             EEEEEEEeCCCceecccEEEEEec---CCeEEcCCCcEEEcCCCE------------EEEEeECCCCCCCCEEEEEECCE
Confidence            999999999887543 47888743   344444443333332222            13344444333221122222222


Q ss_pred             ccccc---ccccceeeeeeeeccCcceeeeecCCCccee-eeeeccc
Q psy10487        415 SVSFN---DQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLA  457 (610)
Q Consensus       415 ~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v  457 (610)
                      .+...   .....|.|.+++  |+|.|+|.|.|..|..+ ..+.|.|
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          147 PLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             BSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            22111   356689999887  89999999999999886 6777777

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=4.7e-18  Score=167.17  Aligned_cols=155  Identities=26%  Similarity=0.334  Sum_probs=145.2

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      +.++++++++.++.++....     .+|+.|+|++|.+..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCccccCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            56789999999999986543     4899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      |++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|+|+.++...|..+++|+.|++++|.+..
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99999999999899999999999999999999988888999999999999999999999889999999999999998763

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.76  E-value=4.6e-19  Score=186.36  Aligned_cols=209  Identities=18%  Similarity=0.194  Sum_probs=137.2

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCC-----CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACP-----PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-----P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|+|.+.+..+......+.......+     +.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....
T Consensus       187 ~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~  266 (403)
T 3laf_A          187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS  266 (403)
T ss_dssp             GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSS
T ss_pred             ccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCC
Confidence            367889998877654333222222222111     223445667788899999999999999999999999998876544


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHH
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSV  385 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  385 (610)
                      .......        .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..   +|.+...+....+..+..+.    
T Consensus       267 ~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v~----  331 (403)
T 3laf_A          267 KKYSLLG--------GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV---PPWFLNHPSNLYAYESMDIE----  331 (403)
T ss_dssp             SSEEEET--------TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEECCTTCCEE----
T ss_pred             ceEEECC--------ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC---CCcEeecCcceEEecCCeEE----
Confidence            3222221        24899999999999999999999999999999998843   33444333333332222211    


Q ss_pred             HHhheeEEEEEEeeecccccccccCCc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        386 IVSIGMSFCVCRAHEHKNKRRKRKGKM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                            +.|.....+.+...|.+.+..  .........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       332 ------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          332 ------FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             ------ECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             ------EEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence                  122222222222233322211  111111234567999999999999999999999999999999988763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=6.2e-18  Score=168.22  Aligned_cols=169  Identities=24%  Similarity=0.332  Sum_probs=151.6

Q ss_pred             CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487         28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL  107 (610)
Q Consensus        28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L  107 (610)
                      ..|.|..  ..+.|..            +.+.++++++.++.++....     .+|++|+|++|.|..+.+.+|.++++|
T Consensus         3 ~~C~~~~--~~C~c~~------------~~~~l~~~~~~l~~ip~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L   63 (270)
T 2o6q_A            3 ALCKKDG--GVCSCNN------------NKNSVDCSSKKLTAIPSNIP-----ADTKKLDLQSNKLSSLPSKAFHRLTKL   63 (270)
T ss_dssp             CCBGGGT--CSBEEET------------TTTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred             ccCCCCC--CCCEeCC------------CCCEEEccCCCCCccCCCCC-----CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence            4577752  4566653            45789999999999886432     479999999999999999999999999


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      ++|+|++|+|..++...|.++++|++|+|++|.++.+....|..+++|+.|+|++|+++.+.+..|..+++|+.|+|++|
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            99999999999999999999999999999999999999888999999999999999999998888999999999999999


Q ss_pred             cccccCcccccCCCcccEEecCCCcccc
Q psy10487        188 RLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      .++.++...|..+++|+.|++++|.+..
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCccCHhHccCCcccceeEecCCcCcE
Confidence            9999998889999999999999998653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.75  E-value=9.5e-19  Score=183.35  Aligned_cols=203  Identities=18%  Similarity=0.236  Sum_probs=131.4

Q ss_pred             CCCCCCCCCCCCccCCCccccccc--------ccccCCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEeC-CEE
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKA--------QEFACPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQV  300 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~--------~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~  300 (610)
                      .+.+.|+|.+.+............        .....+|.+.. .+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..
T Consensus       167 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~  246 (384)
T 3kld_A          167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKP  246 (384)
T ss_dssp             GGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCC
T ss_pred             HHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcc
Confidence            467889999887654332111000        00012344433 34567788999999999999999999999995 444


Q ss_pred             eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHH
Q psy10487        301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISV  380 (610)
Q Consensus       301 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~  380 (610)
                      +.....  ..        ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..   +|.+........+..+.. 
T Consensus       247 ~~~~~~--~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~---~P~~~~~~~~~~v~~g~~-  312 (384)
T 3kld_A          247 IARKAR--RH--------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA---QPNWVQIINDIHVAMEES-  312 (384)
T ss_dssp             CCTTCE--EC--------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEEECTTCC-
T ss_pred             ccccce--ec--------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec---CCccccCCCceEecCCCC-
Confidence            432211  11        1134899999999999999999999999999888888843   334433333333332222 


Q ss_pred             HHHHHHHhheeEEEEEEee--ecccccccccCCccc-cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        381 CVVSVIVSIGMSFCVCRAH--EHKNKRRKRKGKMKQ-SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                                 +.+.|...  +.+...|.+.+..-. .-.....++.|.|.++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus       313 -----------v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V  381 (384)
T 3kld_A          313 -----------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV  381 (384)
T ss_dssp             -----------EEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----------EEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEE
Confidence                       12333333  333334433322110 0011234568999999999999999999999999999999987


Q ss_pred             c
Q psy10487        458 M  458 (610)
Q Consensus       458 ~  458 (610)
                      .
T Consensus       382 ~  382 (384)
T 3kld_A          382 I  382 (384)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.75  E-value=5e-18  Score=156.44  Aligned_cols=116  Identities=28%  Similarity=0.489  Sum_probs=92.5

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      +.||..|.|.+    ..++|++++++++|..++.++++|+|++|.|+.+.+..|.  ++.+|++|+|++|+|+.+++..|
T Consensus         1 ~~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A            1 MACPSQCSCSG----TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             -CCC-CCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CcCcCcCCcCC----CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhc
Confidence            37999999986    5899999999999998889999999999999988887776  67788888888888887777777


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE  143 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  143 (610)
                      .++++|++|+|++|+|+.+++..|..+++|++|+|++|++..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            777777777777777777776667666677777666666543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.75  E-value=1.5e-18  Score=162.59  Aligned_cols=170  Identities=16%  Similarity=0.194  Sum_probs=113.9

Q ss_pred             CCceeeeecceEeec-CceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREA-GGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~-G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.. +....+.+ |+.++|.|.+.|.|.  +.+.|++++..+......           ...+.|.|.+++.+|+|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~-----------~~~~~L~i~~~~~~d~G~   70 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----------ASNMEYRINKPRAEDSGE   70 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC-----------CSEEEEEESSCCGGGCEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE-----------eccEEEEEecCCcccCEE
Confidence            566665 44455555 999999999999987  889999999988754421           123689999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--ccccccc--CC-
Q psy10487        337 YTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRK--GK-  411 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~-  411 (610)
                      |+|.|.|. |.....+.|.|..   +|.+...+....+..+..+            .+.|...+.+  ...|.+.  +. 
T Consensus        71 Y~C~~~n~-~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v------------~l~C~~~g~p~p~i~W~~~~~g~~  134 (190)
T 2wv3_A           71 YHCVYHFV-SAPKANATIEVKA---APDITGHKRSENKNEGQDA------------MMYCKSVGYPHPEWMWRKKENGVF  134 (190)
T ss_dssp             EEEEEEET-TEEEEEEEEEEEC---CCEEEEECSEEEEETTSCE------------EEEEEEECSSCCEEEEEEEETTEE
T ss_pred             EEEEEEeC-CcccccEEEEEec---CCcccccCCcceeeCCCcE------------EEEEEeCccCCCceEEEEcCCCce
Confidence            99999999 8888888888843   3344333332222222221            2233333222  2223221  00 


Q ss_pred             -----cccccccc--ccccceeeeeee-eccCcceeeeecCCCcceeeeeeccc
Q psy10487        412 -----MKQSVSFN--DQEKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       412 -----~~~~~~~~--~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                           ........  .....|.|.+++ .+|+|.|+|.|.|..|..+..+.|.|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             EECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence                 11111111  222479999999 79999999999999999888877765

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.75  E-value=2.8e-18  Score=173.38  Aligned_cols=189  Identities=15%  Similarity=0.159  Sum_probs=114.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y  337 (610)
                      .+|.|...+..+.+.+|+.++|.|.+.|.|.|.|.|+++|..+...........++     ....|.|.+++. +|+|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~-----~~~~L~i~~~~~~~D~G~Y   79 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-----AGAVLRIQPLRTPRDENVY   79 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTT-----TEEEEEECSCCTTTTCSEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCC-----CceEEEEecccccCCCeEE
Confidence            57889888999999999999999999999999999999998875443221111221     125899999998 999999


Q ss_pred             EEEeecCCcceeEEEEEEcCccccc----cccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcc
Q psy10487        338 TCYAENIRGNASGEISLDLPEINLA----TTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK  413 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (610)
                      +|.|.|..|.....+.|.|......    |.+...+....+..+..+.+.|.+.+.+...+.|.+.+.....    ....
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~----~~~~  155 (304)
T 2yd9_A           80 ECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP----SASN  155 (304)
T ss_dssp             EEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCG----GGGT
T ss_pred             EEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcC----CCCc
Confidence            9999999999888888888543221    3333333333333222222111111111112222211111000    0000


Q ss_pred             ccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eeccc
Q psy10487        414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLA  457 (610)
Q Consensus       414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v  457 (610)
                      .. .....++.|.|.+++.+|+|.|+|.|.|..|..... +.+.+
T Consensus       156 ~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          156 GR-IKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             TS-EEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ce-EEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence            00 112334589999999999999999999999976643 34433

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.74  E-value=1e-18  Score=166.65  Aligned_cols=177  Identities=12%  Similarity=0.088  Sum_probs=111.9

Q ss_pred             CceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.+.. +..+.+.+|+.+.|.|.+. +.|.|.|+|++||..+..+.+.....+...    ....|.|.+++.+|+|.|+|
T Consensus         4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~----g~~~L~I~~v~~~D~G~Y~C   78 (207)
T 3rbs_A            4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT----GIIEMFMEKLQDEDEGTYTF   78 (207)
T ss_dssp             --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTT----CEEEEEESCCCGGGCEEEEE
T ss_pred             Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCC----CEEEEEECCCChhhCEEEEE
Confidence            33433 4467889999999999996 579999999999999977655444332221    12379999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCcc-----------c-------cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487        340 YAENIRGNASGEISLDLPEI-----------N-------LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH  401 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~-----------~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (610)
                      .|.|  |.+...+.+.+...           .       .+|.+..... ..+..+..            +.+.|...+.
T Consensus        79 ~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~v~~g~~------------v~l~C~v~g~  143 (207)
T 3rbs_A           79 QLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECN------------VLLKCKVANI  143 (207)
T ss_dssp             EEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEE-EEEETTTE------------EEEEEEEESC
T ss_pred             EEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCC-cEEcCCCc------------EEEEEEEeCC
Confidence            9999  66655555432100           0       1233222221 11111111            1334443332


Q ss_pred             ---ccccccccCCc---cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        402 ---KNKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       402 ---~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                         +...|.+.+..   ............|.|.+++.+|+|.|+|.|.|..|+++.++.|.+
T Consensus       144 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          144 KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence               33344332211   111122233457999999999999999999999999999988864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.74  E-value=1.2e-17  Score=169.50  Aligned_cols=215  Identities=14%  Similarity=0.067  Sum_probs=136.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.....+.....+... ...+|.+........+..|+.+.+.|.+. |.|.|.+.|++++..+......  
T Consensus        89 ~D~G~Y~C~v~~~~~~~~~~~~~l~-v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~--  165 (313)
T 4fqp_A           89 EDEGNYTCLFVTFPQGSRSVDIWLR-VLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV--  165 (313)
T ss_dssp             GGCEEEEEEEECSSSCEEEEEEEEC-CBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE--
T ss_pred             hhCEEEEEEEeeccCcceeeeeeee-eccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee--
Confidence            3677899976433333322223222 23467777777777788899999999875 8899999999998877543321  


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE--EEEEcCccccccccccC-CcceeehhhhHHHHHHHH
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPEINLATTLSKT-DSWYMLVLGISVCVVSVI  386 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~L~V~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~  386 (610)
                       ....++.+...+.|.|..+...|.|.|+|.|.|..|.....  +.|.|.   .+|.+... ........+..       
T Consensus       166 -~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~v~~~~~~~~~~~~g~~-------  234 (313)
T 4fqp_A          166 -PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---YPPEVSISGYDNNWYLGQNE-------  234 (313)
T ss_dssp             -ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC---EEEEEEEECCCSCEETTCCC-------
T ss_pred             -eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc---cCCccccccccceeecCCCe-------
Confidence             11112233455689999999999999999999998876544  444442   23333221 11122222111       


Q ss_pred             HhheeEEEEEEeeecccccccccCCccccc--cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCcc
Q psy10487        387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSV--SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVH  464 (610)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~  464 (610)
                           +.+.|...+.|.+....|.+.+..+  ....++..|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|.+.||-+
T Consensus       235 -----v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~~  309 (313)
T 4fqp_A          235 -----ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPHH  309 (313)
T ss_dssp             -----EEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC---
T ss_pred             -----EEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCCC
Confidence                 1334554554433222333333322  123455689999999999999999999999999999999999888754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.74  E-value=1.3e-18  Score=166.65  Aligned_cols=196  Identities=19%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      ..+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|+++|..+.......  ....++    .....|.|.+++.+|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~----~~~~~l~i~~v~~~d~G   82 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG----ALFFYRTMQGKKEQDGG   82 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTS----CEEESSCCBSSSCBCCE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCC----ceEEEEEeccCCcccCc
Confidence            357888888999999999999999999999999999999999887653211  111122    11224578899999999


Q ss_pred             EEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeecccccccccCCcc
Q psy10487        336 EYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEHKNKRRKRKGKMK  413 (610)
Q Consensus       336 ~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (610)
                      .|+|.|.|..|.. ...+.|.|...  +|.+...+....+..+..+.+.|.+ .+.+...+.|.+.+.............
T Consensus        83 ~Y~C~~~n~~g~~~~~~~~l~v~~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  160 (217)
T 2vr9_A           83 EYWCVAKNRVGQAVSRHASLQIAVL--RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA  160 (217)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEE--CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred             eEEEEEecCCCccccccceEEEEEe--CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence            9999999999976 34566666422  2233333333333322222222222 222222333332222111000000001


Q ss_pred             ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ........++.|.|.+++.+|+|.|+|.|.|..|..+....++++.
T Consensus       161 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            1111123456799999999999999999999999988876666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=2.6e-17  Score=168.74  Aligned_cols=170  Identities=22%  Similarity=0.370  Sum_probs=96.1

Q ss_pred             cEEEcCCCCCCcc-CcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTAL-PSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~l-P~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..+++++.+ |..+.  .+|++|+|++|.|+.++...+     .+|++|++++|.+..+.+..|.++++|++|+++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            4556666666655 33332  356666666666665554332     356666666666666665556666666666666


Q ss_pred             CCCCCC--CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487        114 DNQIAW--LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       114 ~n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      +|++..  +.+..|.++++|++|+|++|.++.++...+   ++|+.|+|++|++..+.+..|..+++|+.|+|++|.++.
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            666543  444555556666666666666555543322   455555665555555555555555555556665555555


Q ss_pred             cCcccccCCCcccEEecCCCccc
Q psy10487        192 LSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       192 ~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      +....+..+++|+.|++++|.+.
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS
T ss_pred             eChhhccCCCCCCEEECCCCcCc
Confidence            55545555555555555555544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.7e-18  Score=177.34  Aligned_cols=190  Identities=20%  Similarity=0.163  Sum_probs=121.2

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      ...+.+|+.++|.|.+.|.|.|.+.|++++..+.............     ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  206 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-----QQWSLVMESVVPSDRGNYTCVVENKFGSI  206 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCT-----TTTEEEECSCCGGGCCCEEEEEEETTEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceeccc-----ceEEEEECCCCcccCEEEEEEEEeCCCCE
Confidence            4678899999999999999999999999998876654321111111     12489999999999999999999999999


Q ss_pred             eEEEEEEcCcccc-cccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeee---ccccccccc-----CCccccccc
Q psy10487        349 SGEISLDLPEINL-ATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---HKNKRRKRK-----GKMKQSVSF  418 (610)
Q Consensus       349 ~~~~~L~V~~~~~-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~  418 (610)
                      ...+.|.|..... +|.+.. .+....+..+..+.+.|.+.+.+...+.|.+..   .........     .........
T Consensus       207 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  286 (334)
T 1ry7_B          207 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTT  286 (334)
T ss_dssp             EEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCS
T ss_pred             EEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccc
Confidence            8899898854322 222322 222233333333333333333333333443321   100000000     000000000


Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPV  463 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~  463 (610)
                      ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.|+.
T Consensus       287 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             CTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             cccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            112247999999999999999999999999999999998876543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.73  E-value=1.7e-18  Score=162.12  Aligned_cols=180  Identities=18%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      -+|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+...........++       ..|.|.+++.+|+|.|+
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-------QLLTILSVEDSDDGIYC   78 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG-------TEEEESSCCGGGCEEEE
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc-------cEEEEcCCCcccCeEEE
Confidence            35777777788889999999999999999999999999999886543222222111       37999999999999999


Q ss_pred             EEeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc--ccc
Q psy10487        339 CYAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM--KQS  415 (610)
Q Consensus       339 C~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  415 (610)
                      |.+.|..|. ....+.|.|..   +|.+...+....+..+....          +.|.......+...|.+.+..  ...
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~----------l~C~~~g~p~~~v~W~~~~~~~~~~~  145 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQVKM---KPKITRPPINVKIIEGLKAV----------LPCTTMGNPKPSVSWIKGDSALRENS  145 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEEEE---EEEEEECCCCEEEETTSCEE----------ECCEEEEESCCEEEEEETTEECCCCS
T ss_pred             EEEEcCCCceeEeEEEEEEEe---CCccccCCcceEEeCCCcEE----------EEEEEeccCCceEEEEeCCEEccCCC
Confidence            999999887 45566777632   23333333322222222211          122222222222223222111  011


Q ss_pred             ccccccccceeeeeeeeccCcceeeeecCCCcceee-eeecccc
Q psy10487        416 VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAM  458 (610)
Q Consensus       416 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~  458 (610)
                      ......++.|.|.+++.+|+|.|+|.|.|..|.... ...|.|.
T Consensus       146 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            111234557999999999999999999999998744 3555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.73  E-value=2.6e-17  Score=152.16  Aligned_cols=116  Identities=30%  Similarity=0.581  Sum_probs=93.8

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      ..||..|.|.    ...++|.+++++++|..++.+|++|+|++|.|+.+++..|.  ++.+|++|+|++|+|+.+++..|
T Consensus         4 ~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~   77 (174)
T 2r9u_A            4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVF   77 (174)
T ss_dssp             CSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhHh
Confidence            5799999997    36899999999999999999999999999999988887777  67788888888888887777777


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE  143 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  143 (610)
                      .++++|++|+|++|+|..+++..|..+++|++|+|++|++..
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            777777777777777777776666666667766666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=2.4e-17  Score=152.92  Aligned_cols=136  Identities=27%  Similarity=0.468  Sum_probs=88.9

Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN  185 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  185 (610)
                      +|++|+|++|++..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44455555555554444444455555555555555555544445555566666666666666555555666677777777


Q ss_pred             cccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCCCCCC
Q psy10487        186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLSCTEP  241 (610)
Q Consensus       186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~C~a~  241 (610)
                      +|.++.++...+..+++|+.|++++|+|.|+|. +.++..|+.... .......|..+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~  166 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  166 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC
Confidence            777777777667778899999999999999997 788888987644 33467778653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.73  E-value=7.4e-18  Score=160.27  Aligned_cols=166  Identities=15%  Similarity=0.141  Sum_probs=111.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...+....+.+|++++|.|.+.|.|.|. +.|+++|..+....                +.|.|.+++.+|+|.|+
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------------~~L~i~~v~~~D~G~Y~   70 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------------SSYFIDAATVDDSGEYR   70 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------------SEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------------cEEEEecccccCCEEEE
Confidence            46777778778999999999999999999886 99999998876543                38999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF  418 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (610)
                      |.|.|..  .+..+.|.|...   |.+...+......+ ..            +.+.|.....+......|.+.+..+..
T Consensus        71 C~a~n~~--~s~~~~l~V~~~---p~~~~~~~~~v~~G-~~------------v~L~C~~~~~~p~~~v~W~k~g~~~~~  132 (204)
T 3sgj_C           71 CQTQLST--LSDPVQLEVHIG---WLLLQAPRWVFKEE-DP------------IHLRCHSWKNTALHKVTYLQNGKGRKY  132 (204)
T ss_dssp             EEETTSB--CCCCEEEEEECS---SEEEECSCSEEETT-CC------------EEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             EEeCCCc--ccccEEEEEecC---ceEecCCceeEeCC-Cc------------EEEEEEecCCCCCceEEEEECCcEeec
Confidence            9999854  444555655322   22222222222221 11            133454433322122334334443434


Q ss_pred             cccccceeeeeeeeccCcceeeeecCC-Ccceeeeeeccccc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGS-QPDMELIEQSLAME  459 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~-~G~~~~~~~l~v~~  459 (610)
                      ...+..|.|.+++.+|+|.|+|.|.|. .+..+....+.|.+
T Consensus       133 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          133 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence            455678999999999999999999994 44444455555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=2.6e-17  Score=172.76  Aligned_cols=131  Identities=21%  Similarity=0.378  Sum_probs=81.2

Q ss_pred             cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..+..++.+|..+   .++|++|+|++|.|+.++...|.  ++.+|++|+|++|.+..+.+..|.++++|++|+|+
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            34455555555555432   24566666666666666655555  56666666666666666666666666666666666


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                      +|++..++...|.++++|++|+|++|.++.+.+..|..+++|+.|++++|+++.+.
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence            66666666655666666666666666666666655666666666666666665543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.72  E-value=8.7e-18  Score=169.78  Aligned_cols=210  Identities=18%  Similarity=0.189  Sum_probs=128.4

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|+|.+.+..+. ....+......      ..|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...
T Consensus        74 ~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~  152 (304)
T 2yd9_A           74 RDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS  152 (304)
T ss_dssp             TTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG
T ss_pred             CCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC
Confidence            4678899988765543 11122221111      1267777778888999999999999999999999999999988654


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE-EEEEcCccccccccccCCcceeehhhhHHHHH
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE-ISLDLPEINLATTLSKTDSWYMLVLGISVCVV  383 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~  383 (610)
                      ........      ...+.|.|.+++.+|+|.|+|.|.|..|..... +.+.|.....+|.+...+....+..+..    
T Consensus       153 ~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~----  222 (304)
T 2yd9_A          153 ASNGRIKQ------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN----  222 (304)
T ss_dssp             GGTTSEEE------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCC----
T ss_pred             CCcceEEe------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCe----
Confidence            32211111      112489999999999999999999999986532 4454432334444444433332222221    


Q ss_pred             HHHHhheeEEEEEEeee--cccccccccCCccc-cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        384 SVIVSIGMSFCVCRAHE--HKNKRRKRKGKMKQ-SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       384 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                              +.+.|...+  .+...|.+.+..-. ..........|.+.++  +|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus       223 --------v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  292 (304)
T 2yd9_A          223 --------VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL  292 (304)
T ss_dssp             --------EEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred             --------EEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence                    123333333  33333333221100 0011122234666655  5999999999999999999999988764


Q ss_pred             C
Q psy10487        461 P  461 (610)
Q Consensus       461 p  461 (610)
                      +
T Consensus       293 ~  293 (304)
T 2yd9_A          293 P  293 (304)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.72  E-value=1.6e-17  Score=176.27  Aligned_cols=210  Identities=11%  Similarity=0.097  Sum_probs=124.5

Q ss_pred             cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccc
Q psy10487        230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      ..+.+.|.|.+.|..+......+... +..+|.+  .+....+.+|+.++|.|.+.| .|.|.|.|++++..+.......
T Consensus       200 ~~d~G~Y~C~A~N~~G~~~~~~~~l~-V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~  276 (423)
T 3qs7_E          200 ELFGTDIRCCARNELGRECTRLFTID-LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE  276 (423)
T ss_dssp             CCCSSCEEEEEECSSCEEEEECEEEE-SSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEE
T ss_pred             cccCeEEEEEEEcCCCCcceeeEEEE-EecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceee
Confidence            35678899999887654322222222 2223333  345678899999999999999 7889999999998775432111


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCC--cceeehhhhHHHHHHHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTD--SWYMLVLGISVCVVSVI  386 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~  386 (610)
                      .....++......+.|.|.+++.+|+|.|+|.|.|.   .+..+.|.|.+.   |.+...+  ....+..+..+.     
T Consensus       277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~---p~i~~~~~~~~~~v~~G~~v~-----  345 (423)
T 3qs7_E          277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK---GFINATNSSEDYEIDQYEEFC-----  345 (423)
T ss_dssp             EEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESS---CEEEEC---CEECCCTTCCCC-----
T ss_pred             cccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeC---CcceEcCCCccEEecCCCeEE-----
Confidence            111111112344568999999999999999999998   677777877432   2222211  112222111111     


Q ss_pred             HhheeEEEEEEeeecccccccccCCccccccccc--cccceee--eeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFND--QEKKLLD--VSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i--~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                           +.|.....+.+...|.+   .+..+....  ....+.+  ..+..+|+|.|+|.|.|..|.++.++.|.|...|
T Consensus       346 -----l~C~~~g~P~p~i~W~k---~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          346 -----FSVRFKAYPQIRCTWTF---SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             -----EEEEEEEESCCEEEEEE---TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             -----EEEEEEEcCCCeEEEEE---CCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence                 23333333333333333   332221111  0112333  5566789999999999999999999999887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=4.3e-17  Score=162.30  Aligned_cols=156  Identities=31%  Similarity=0.350  Sum_probs=144.5

Q ss_pred             CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      ..+|+.|++++|.++.++.  +.  .+++|++|+|++|.+..+.  .|..+++|++|+|++|++..+.+..|.++++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG--IQ--YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GG--GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccceeeeeeCCCCcccccc--cc--cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3589999999999998763  44  6899999999999999874  6899999999999999999999998999999999


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      |+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|+++.++...+..+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99999999999998899999999999999999999888889999999999999999999998888999999999999987


Q ss_pred             cc
Q psy10487        214 CC  215 (610)
Q Consensus       214 ~c  215 (610)
                      ..
T Consensus       194 ~~  195 (272)
T 3rfs_A          194 KS  195 (272)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.72  E-value=5.5e-18  Score=163.40  Aligned_cols=197  Identities=21%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             CCceeeee----cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIKE----SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~~----~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      +|.+...+    ....+.+|++++|.|.+.|.|.|.+.|++++..+............     ...+.|.|.+++.+|+|
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G   89 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKG   89 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeee-----cCcceEEEecCCcccCE
Confidence            35554444    6778899999999999999999999999999988655432111100     11248999999999999


Q ss_pred             EEEEEeecCCcceeEEEEEEcCcccc-ccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc-
Q psy10487        336 EYTCYAENIRGNASGEISLDLPEINL-ATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM-  412 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~-~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  412 (610)
                      .|+|.|.|..|.....+.|.|..... +|.+. ..+....+..+..+.+.|.+.+.+...+.|.+.............. 
T Consensus        90 ~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~  169 (231)
T 3ojm_B           90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP  169 (231)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCB
T ss_pred             EEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcc
Confidence            99999999999988888888854322 12221 1222222222222222222222222222222211100000000000 


Q ss_pred             -----cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        413 -----KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       413 -----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                           ............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus       170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence                 0000111234569999999999999999999999999998888887653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=6.9e-18  Score=171.68  Aligned_cols=175  Identities=14%  Similarity=0.158  Sum_probs=138.4

Q ss_pred             cEEEcCC-CCCC-ccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKD-ANFT-ALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~-~~l~-~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      +.++..+ +++. .+|..+.  .+|++|+|++|.|+...+..|.  ++++|++|+|++|.+....+..|..+++|++|+|
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            4566663 5555 6776553  5899999999999866666676  6899999999999999777888999999999999


Q ss_pred             cCCCCCCCCcccccCCC-CCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487        113 SDNQIAWLHQDTFLGND-RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       113 s~n~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      ++|++....+..|..+. +|++|+|++|.++...+..|..+. |+.|+|++|++....+..|..+++|+.|+|++|.++.
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            99999866667788887 899999999998877666777776 8888888888887777777778888888888888776


Q ss_pred             cCcccccCCCcccEEecCCCcccc
Q psy10487        192 LSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       192 ~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      ..+. +..+++|+.|++++|.+..
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             ecCc-ccccCCCCEEECcCCcccC
Confidence            5554 5566777778887777653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.72  E-value=3.4e-17  Score=151.98  Aligned_cols=176  Identities=18%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............    ...+.|.|.+++.+|+|.|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C   77 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ----HWIGFLSLKSVERSDAGRYWC   77 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT----EEEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCC----CceEEEEEeecCcccCeEEEE
Confidence            4667777888999999999999999999999999999999887654332222221    224689999999999999999


Q ss_pred             EeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487        340 YAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF  418 (610)
Q Consensus       340 ~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (610)
                      .|.|..|. .+..+.|.|..   +|.+...+....+..+..            +.+.|...+.+......|.+.+..+..
T Consensus        78 ~~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~~v~W~~~~~~~~~  142 (182)
T 1rhf_A           78 QVEDGGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAP------------FQLSCEAVGPPEPVTIVWWRGTTKIGG  142 (182)
T ss_dssp             EESSCTTCEECCCEEEEEEC---SCEEEECCCCEEECTTCC------------EEEEEEEECSSSCCEEEEEETTEECSC
T ss_pred             EEEcCCCcEEEEEEEEEEec---CCeEEecCcceEecCCCE------------EEEEeEecCCCCCCEEEEEcCCeECCC
Confidence            99999875 45677787743   344444333333322221            233444444433212233333222211


Q ss_pred             -cccccceeeeeeeeccCcceeeeecCCCcceee-eeecc
Q psy10487        419 -NDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSL  456 (610)
Q Consensus       419 -~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~  456 (610)
                       ......|.|.++  +|+|.|+|.|.|..|..+. .+.|.
T Consensus       143 ~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          143 PAPSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVH  180 (182)
T ss_dssp             SEESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEE
Confidence             125567888888  5999999999999998754 44443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.72  E-value=9.1e-19  Score=166.31  Aligned_cols=171  Identities=15%  Similarity=0.128  Sum_probs=103.0

Q ss_pred             ceEeecCceEEEEEE---EEecCCCeEEEEeCCEEeccCC----cccee--ecc--CCce---eeeeeEEEEEecCCCCC
Q psy10487        269 MVIREAGGNVTMSCY---VYGDPEPTILWLLNGQVLHNSS----FDLLE--EEE--GDAL---FEKSVSITLFNVTDLDA  334 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~---~~g~P~p~v~W~~~g~~l~~~~----~~~~~--~~~--~~~~---~~~~~~L~I~~v~~~D~  334 (610)
                      .+++..|+.++|.|.   +.|.|.|.|+|+|+|..+....    .....  ...  +...   ......|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467889999999995   5688999999999764321100    00000  000  0000   01235899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcc-
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK-  413 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  413 (610)
                      |.|+|.|.|..|..+..+.|.|..   +|.+...+....+..+..          ..+.|.....+.+...|.+..... 
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~---p~~~~~~~~~~~v~~g~~----------~~l~C~~~G~P~P~v~W~~~~~~~~  148 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSERSQFPDFSV----------LTVTCTVNAFPHPHVQWLMPEGVEP  148 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE---EEEEEEEEEECCSSCSCC----------EEEEEEEEEESCCEEEECCC-----
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC---CceeeecceeEEEcCCCE----------EEEEEEcCCCCCCEEEEEECCeeec
Confidence            999999999999999999998842   333333333222222111          112333334444444453322110 


Q ss_pred             -----ccccccccccce---eeeeeeeccCcceeeeecCCCcceeee
Q psy10487        414 -----QSVSFNDQEKKL---LDVSITTTDRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       414 -----~~~~~~~~~~~L---~i~~v~~~D~G~Y~C~A~N~~G~~~~~  452 (610)
                           ........++.|   .+.++..+|+|.|+|+|+|.+|+++..
T Consensus       149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence                 011112334444   446888999999999999999998764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-18  Score=174.38  Aligned_cols=214  Identities=13%  Similarity=0.083  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus        70 ~D~G~Y~C~~~n~~g~~~~~~~~l-~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  148 (291)
T 2wim_A           70 EDAGIYRCQATDAKGQTQEATVVL-EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA  148 (291)
T ss_dssp             GGCEEEEEEEECSSSCEEEEEEEE-EEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEE
T ss_pred             ccCEEEEEEEecccCceEEEEEEE-EecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEE
Confidence            467889998876654332222222 2234566666677788999999999999999999999999999877643321111


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCcc--eeehhhhHHHHHHHH
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSW--YMLVLGISVCVVSVI  386 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~  386 (610)
                      .       ...+.|.|.+++.+|+|.|+|.|.|..+..  ...+.+.|..   +|.+......  ..+..+..+.+.|.+
T Consensus       149 ~-------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~  218 (291)
T 2wim_A          149 M-------LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFSCRA  218 (291)
T ss_dssp             E-------CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB---CCCCBCSCSEEECCSSSCCEEEEECBC
T ss_pred             E-------ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc---CCccccCcccccceecCCCeEEEEEEe
Confidence            1       112479999999999999999999998653  3455555532   2232222211  111111111111111


Q ss_pred             HhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487        387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP  462 (610)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp  462 (610)
                      .+.+...+.|.+.+...       ...........+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+++|
T Consensus       219 ~g~p~p~v~W~~~g~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          219 SGSPEPAISWFRNGKLI-------EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             CCBSCCEEEEEETTEEC-------CCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             ecCCCCeEEEEECCEEC-------cCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            12222222222211110       0111122233456899999999999999999999999999999999987654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.72  E-value=2.5e-17  Score=169.00  Aligned_cols=169  Identities=18%  Similarity=0.309  Sum_probs=103.8

Q ss_pred             cEEEcCCCCCCcc-CcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTAL-PSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~l-P~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..+++++.+ |..+.  .+|++|+|++|.|+.++...+     .+|++|++++|.+..+.+..|.++++|++|+++
T Consensus        81 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A           81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence            4566666666666 33332  467777777777776665443     467777777777777776667777777777777


Q ss_pred             CCCCCC--CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487        114 DNQIAW--LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       114 ~n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      +|.+..  +.+..|..+ +|+.|+|++|.++.++...+   ++|+.|+|++|++..+.+..|..+++|+.|+|++|+++.
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            777753  455556555 66666666666665544322   455555666666655555555555566666666666655


Q ss_pred             cCcccccCCCcccEEecCCCccc
Q psy10487        192 LSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       192 ~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      +....+..+++|+.|++++|.+.
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CChhHhhCCCCCCEEECCCCcCe
Confidence            55555555555666666655554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.71  E-value=8.5e-18  Score=168.37  Aligned_cols=206  Identities=15%  Similarity=0.139  Sum_probs=132.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+..++.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus        72 ~D~G~Y~C~~~n~~g~~~~~~~~l~-v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  150 (291)
T 1qz1_A           72 DDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI  150 (291)
T ss_dssp             GGCEEEEEEEECTTSCEEEEEEEEE-EECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred             CCCEEEEEEEEcCCCCeeEEEEEEE-eeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEE
Confidence            4678899998776643322222222 235677777788888999999999999999999999999999877544322222


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCc--ceeehhhhHHHHHHHH
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDS--WYMLVLGISVCVVSVI  386 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~  386 (610)
                      ..       ..+.|.|.+++.+|+|.|+|.|.|..+..  ...+.+.|..   +|.+.....  ...+..+..       
T Consensus       151 ~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~-------  213 (291)
T 1qz1_A          151 VL-------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV---PPTVQARQSIVNATANLGQS-------  213 (291)
T ss_dssp             EC-------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE---EEEEEESCSEEEEETTSCCC-------
T ss_pred             Ec-------cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec---CCcccccccccccccccCce-------
Confidence            11       12489999999999999999999987543  3455666532   222222111  111111111       


Q ss_pred             HhheeEEEEEEeee--cccccccccCCcc-------ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        387 VSIGMSFCVCRAHE--HKNKRRKRKGKMK-------QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       387 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                           +.+.|...+  .+...|.+.+..-       ...........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus       214 -----v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  288 (291)
T 1qz1_A          214 -----VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV  288 (291)
T ss_dssp             -----EEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----EEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEE
Confidence                 122333333  2233333322110       11222234567999999999999999999999999999888887


Q ss_pred             cc
Q psy10487        458 ME  459 (610)
Q Consensus       458 ~~  459 (610)
                      .+
T Consensus       289 ~~  290 (291)
T 1qz1_A          289 FA  290 (291)
T ss_dssp             EC
T ss_pred             Ec
Confidence            64

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.71  E-value=1.1e-17  Score=156.50  Aligned_cols=173  Identities=20%  Similarity=0.199  Sum_probs=110.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ++.+...+....+.+|+.++|.|.+.|.| .+.+.|++ +|..+.............    ...+.|.|.+++.+|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEE
Confidence            35677788899999999999999999987 89999999 888776433222111110    1235899999999999999


Q ss_pred             EEEeecCC-cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc--
Q psy10487        338 TCYAENIR-GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM--  412 (610)
Q Consensus       338 ~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--  412 (610)
                      +|.|.|.. +..+..+.|.|..   +|.+...+....+..+....            +.|.....+  ...|.+.+..  
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~------------l~C~~~g~p~~~v~W~~~~~~~~  142 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIFQ---KLMFKNAPTPQEFKEGEDAV------------IVCDVVSSLPPTIIWKHKGRDVI  142 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEC---CSEEEECCSSEECCTTSCEE------------ECCEEECSSCCEEEEEETTEEGG
T ss_pred             EEEEEcCCCcceEEEEEEEeec---CceEecCCCcEeecCCCeEE------------EEEEECCCCCCEEEEEECCEEee
Confidence            99999998 5567777887732   33333333333322222211            222222222  2222221110  


Q ss_pred             --cccccccccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        413 --KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       413 --~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                        .........++.|.|.+++.+|+|.|+|.|.|..|....
T Consensus       143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  183 (191)
T 1epf_A          143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN  183 (191)
T ss_dssp             GGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             ccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEE
Confidence              000111123458999999999999999999998865433

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=168.76  Aligned_cols=210  Identities=13%  Similarity=0.075  Sum_probs=128.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCce--eeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNV--TIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i--~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|+|.+.+...+.....+..... .+|.+  ...+.......|+.+.|.|.+ .|.|.|.|.|++++..+..... 
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~-  161 (308)
T 4fom_A           84 SDSGKYICKAVTFPLGNAQSSTTVTVL-VEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT-  161 (308)
T ss_dssp             GGCEEEEEEEEETTTEEEEEEEEEEEE-BCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE-
T ss_pred             HHCEEEEEEEeeCCCcceeeeeEEEee-eccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc-
Confidence            367889998765433332222222221 23333  233455566678999999975 6899999999999987754321 


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE--EEEEEcCccccccccccCC-cceeehhhhHHHHHH
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG--EISLDLPEINLATTLSKTD-SWYMLVLGISVCVVS  384 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~L~V~~~~~~p~~~~~~-~~~~~~~~~~~~~~~  384 (610)
                        ....+  .....+.|.|..+..+|.|.|+|.|.|..|....  ++.|.|.   .+|.+...+ .......+..     
T Consensus       162 --~~~~~--~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~~~~~~~~~~~~~~g~~-----  229 (308)
T 4fom_A          162 --SFPNE--TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ---YAPEVSVTGYDGNWFVGRKG-----  229 (308)
T ss_dssp             --ECTTS--CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC---EEEEECCBCCCSCEETTCCS-----
T ss_pred             --eeeee--cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe---cCCeeEEcccceeeeecccc-----
Confidence              11111  2234568999999999999999999999887654  4444443   223332222 1122222111     


Q ss_pred             HHHhheeEEEEEEeeecccccccccCCccccc---cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV---SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                             +.+.|...+.+.+....|.+.+..+   ........|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|.++|
T Consensus       230 -------v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          230 -------VNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             -------CEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             -------EEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence                   1334444444433222333322222   122334456788999999999999999999999999999988764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=167.67  Aligned_cols=187  Identities=16%  Similarity=0.092  Sum_probs=125.5

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+    ..+.|.|.+++.+|+|.|+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEESSCCGGGCSEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCC----CEEEEEEccCChhhCeEEE
Confidence            478888889999999999999999999999999999999998875433222111111    1248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcccc--ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc--
Q psy10487        339 CYAENIRGNASGEISLDLPEINL--ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM--  412 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--  412 (610)
                      |.|.|..|..+..+.|.|...+.  .|..........+..+..            +.+.|...+  .+...|.+....  
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~i~W~~~~~~~~  146 (305)
T 2nzi_A           79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV------------VSIKIPFSGKPDPVITWQKGQDLID  146 (305)
T ss_dssp             EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCC------------EEEEEEEEEESCCEEEEEESSSBCC
T ss_pred             EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCE------------EEEEEEECCCCCCEEEEEECCEECC
Confidence            99999999998899998853221  111111111111111111            123333333  333334332211  


Q ss_pred             -cccc--cccccccceeeee-eeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        413 -KQSV--SFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       413 -~~~~--~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                       ....  ........|.|.+ ++.+|+|.|+|.|.|..|..+....+.|.+.|
T Consensus       147 ~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  199 (305)
T 2nzi_A          147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP  199 (305)
T ss_dssp             SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC
Confidence             1111  1112446788988 99999999999999999999998888876543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.70  E-value=1.9e-17  Score=185.45  Aligned_cols=206  Identities=17%  Similarity=0.229  Sum_probs=129.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+..+......+......-|+.....+....+.+|+.++|.|.+.|.|.|.+.|+++|..+...      
T Consensus       352 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~------  425 (642)
T 1e07_A          352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT------  425 (642)
T ss_pred             ccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC------
Confidence            36678999998876543322233333223333445566778899999999999999999999999999876532      


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE--EEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                                 ..|.|.+++.+|+|.|+|.|.|..|....+  +.+.|.....+|.+..... ..+..+..+.+.|.+..
T Consensus       426 -----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~-~~v~~g~~v~l~C~~~~  493 (642)
T 1e07_A          426 -----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS-KPVEDKDAVAFTCEPEA  493 (642)
T ss_pred             -----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCc-eeecCCCeEEEEEECCC
Confidence                       279999999999999999999999976554  4555544333444433222 11212222111111111


Q ss_pred             heeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceee-eeecccccCCC
Q psy10487        389 IGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAMEQPP  462 (610)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~~pp  462 (610)
                       +...+.|++.+..-.       ....+.....++.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|...|+
T Consensus       494 -~~~~i~W~~~g~~l~-------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~  560 (642)
T 1e07_A          494 -QNTTYLWWVNGQSLP-------VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD  560 (642)
T ss_pred             -CCcEEEEEECCEeCC-------CCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC
Confidence             111222222221110       1111222234568999999999999999999999997654 47777765443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=1.2e-17  Score=170.27  Aligned_cols=175  Identities=21%  Similarity=0.239  Sum_probs=142.3

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ  116 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~  116 (610)
                      +.++..+++++.++.  ..+|++|++++|.|+.+...     .+++|++|++++|.+..+.+..|..+++|++|+|++|+
T Consensus        83 ~~L~Ls~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           83 RTLDLNNNYVQELLV--GPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             CEEECCSSEEEEEEE--CTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             CEEECcCCccccccC--CCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            345555555555542  24666666666666655433     35689999999999999998899999999999999999


Q ss_pred             CCCCCcccc-cCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        117 IAWLHQDTF-LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       117 l~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      +..+.+..| ..+++|++|+|++|.++.+..  ...+++|+.|+|++|+|+.+++. |..+++|+.|+|++|+++.++. 
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-  231 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-  231 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-
Confidence            999877766 478999999999999999855  33589999999999999999765 8899999999999999998876 


Q ss_pred             cccCCCcccEEecCCCcccccCCchhh
Q psy10487        196 VFFPTPNLKTLSLDGNPWCCDCHLRSF  222 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~c~c~l~~~  222 (610)
                      .+..+++|+.|++++|++.|+|...++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            467889999999999999998654443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=7.7e-17  Score=165.01  Aligned_cols=175  Identities=19%  Similarity=0.249  Sum_probs=146.7

Q ss_pred             CCcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         35 GKKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        35 ~~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      +...++..+++++.+|..+.  .+|++|+|++|.|+.++. .|.  ++.+|++|+|++|.+..+ +..|..+++|++|+|
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQ--QFAGLETLTLARNPLRAL-PASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGG--GGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHh--ccCCCCEEECCCCccccC-cHHHhcCcCCCEEEC
Confidence            45788999999999998764  489999999999997764 444  588999999999999977 456899999999999


Q ss_pred             cCCCCCCCCcccc---------cCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487        113 SDNQIAWLHQDTF---------LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN  183 (610)
Q Consensus       113 s~n~l~~l~~~~f---------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  183 (610)
                      ++|++....+..+         .++++|++|+|++|.++.++. .|..+++|+.|+|++|++..+++ .+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            9976655444444         348999999999999997754 58889999999999999998855 588999999999


Q ss_pred             cccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      |++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            99998888777788889999999999987654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.70  E-value=5.7e-18  Score=161.12  Aligned_cols=186  Identities=22%  Similarity=0.314  Sum_probs=117.6

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc----ceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+......    .....++.   .....|.|.+++.+|+
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS---LFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSC---EEESSCCCCSSCCCSC
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCc---EEEEEEEecCCCcccC
Confidence            4688888889999999999999999999999999999999987654321    11111111   1223456677899999


Q ss_pred             eEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-ee--cccccccccC
Q psy10487        335 GEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-HE--HKNKRRKRKG  410 (610)
Q Consensus       335 G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~  410 (610)
                      |.|+|.|.|..|.. +..+.|.|...  ++.+...+....+..+..+            .+.|.. ..  .+...|.+.+
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~--~~~~~~~~~~~~~~~g~~~------------~l~C~~~~~~p~~~v~W~~~~  150 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPA------------VMECQPPRGHPEPTISWKKDG  150 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEE--CSSCSBCCCCEEEETTSCE------------EEECBCCCEESCCEEEEEETT
T ss_pred             eEEEEEEECCCCceeecceEEEEEec--cccceeCCCceEecCCCcE------------EEEEecCCCCCCCEEEEEECC
Confidence            99999999999876 45677777432  2223223332222222221            222322 11  1122222211


Q ss_pred             Cc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eecccccCC
Q psy10487        411 KM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAMEQP  461 (610)
Q Consensus       411 ~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~~p  461 (610)
                      ..  .........++.|.|.+++.+|+|.|+|.|.|..|..+.. +.|.|.++|
T Consensus       151 ~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          151 SPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             EEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence            10  0011122345689999999999999999999999987654 677776543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.70  E-value=1.8e-17  Score=173.72  Aligned_cols=208  Identities=14%  Similarity=0.138  Sum_probs=131.7

Q ss_pred             CCCC---CCCCCCCCccCCCcccccc--cccc---------cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe
Q psy10487        231 LYSH---PLSCTEPGMLQTKHWDDVK--AQEF---------ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL  296 (610)
Q Consensus       231 l~~~---~~~C~a~~~l~g~~~~~v~--~~~~---------~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~  296 (610)
                      .+.+   .|+|.+.+..+........  ...+         ..+|.+  .+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       171 ~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~  248 (395)
T 1bih_A          171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK  248 (395)
T ss_dssp             GGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEE
T ss_pred             ccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEE
Confidence            3556   8999987766543221100  0001         012332  3567788999999999999999999999999


Q ss_pred             CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcc-eee
Q psy10487        297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSW-YML  374 (610)
Q Consensus       297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~-~~~  374 (610)
                      +|..+.............    .....|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..   +|.+...+.. ..+
T Consensus       249 ~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~---~P~~~~~~~~~~~~  321 (395)
T 1bih_A          249 NGKDVNGNPEDRITRHNR----TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS---APKYEQKPEKVIVV  321 (395)
T ss_dssp             TTEECCCCTTSSEESCSS----STTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE---EEEEEECCCSEEEE
T ss_pred             CCEEcCCCCceeEEEEec----CCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc---CCccccCCCcceEe
Confidence            999886543322211111    11137999999999999999999999998765 88888843   3444444433 222


Q ss_pred             hhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ..+..+          .+.|.....+.+...|.+.+..-..-.+...++.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus       322 ~~g~~~----------~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~  391 (395)
T 1bih_A          322 KQGQDV----------TIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL  391 (395)
T ss_dssp             CTTSCE----------EEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCeE----------EEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence            222221          1223333333333344333221110012223458999999999999999999999999988887


Q ss_pred             ccc
Q psy10487        455 SLA  457 (610)
Q Consensus       455 l~v  457 (610)
                      |.|
T Consensus       392 l~V  394 (395)
T 1bih_A          392 VQV  394 (395)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=6.4e-17  Score=165.58  Aligned_cols=176  Identities=18%  Similarity=0.197  Sum_probs=151.5

Q ss_pred             CcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc---------CC
Q psy10487         36 KKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK---------YL  104 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~---------~l  104 (610)
                      -+.++..+++++.+|..+.  .+|++|+|++|.|+.++.. |.  ++++|++|+|++|++....+..+.         ++
T Consensus       106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            3678889999999997664  5899999999999988654 55  689999999999876655555444         59


Q ss_pred             CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccc
Q psy10487        105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNL  184 (610)
Q Consensus       105 ~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  184 (610)
                      ++|++|+|++|+|..++ ..|..+++|++|+|++|.++.++. .|..+++|+.|+|++|++....+..|..+++|+.|+|
T Consensus       183 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            99999999999999776 458999999999999999998866 5889999999999999998888888999999999999


Q ss_pred             ccccccccCcccccCCCcccEEecCCCccccc
Q psy10487        185 NGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD  216 (610)
Q Consensus       185 ~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~  216 (610)
                      ++|.+.+..+..+..+++|+.|++++|.+...
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            99988777777788999999999999986543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.70  E-value=5.3e-18  Score=178.23  Aligned_cols=205  Identities=16%  Similarity=0.210  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCccCCCccc--cccccc------ccCCCceeee---ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEe
Q psy10487        233 SHPLSCTEPGMLQTKHWD--DVKAQE------FACPPNVTIK---ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL  301 (610)
Q Consensus       233 ~~~~~C~a~~~l~g~~~~--~v~~~~------~~c~P~i~~~---~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l  301 (610)
                      .+.|+|.+.+..+.....  .+....      ...+|.+...   +....+.+|+.++|.|.+.|.|.|.+.|++++..+
T Consensus       184 ~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~  263 (404)
T 3p3y_A          184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL  263 (404)
T ss_dssp             SSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCC
T ss_pred             CcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEEC
Confidence            578999987655432111  111111      1123444332   24567889999999999999999999999999887


Q ss_pred             ccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHH
Q psy10487        302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVC  381 (610)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~  381 (610)
                      ...... ..        ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..   +|.+...+....+..+..+.
T Consensus       264 ~~~~~~-~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~v~~g~~~~  331 (404)
T 3p3y_A          264 PSDKAK-FE--------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---APYWLDEPKNLILAPGEDGR  331 (404)
T ss_dssp             CTTTEE-EE--------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE---EEEEEECCCCEEECTTCCEE
T ss_pred             CCCccc-cc--------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC---CCeeeccCCcceeecCCcEE
Confidence            654321 11        1124899999999999999999999999999999998843   33444444333333222211


Q ss_pred             HHHHHHhheeEEEEEEeeecccccccccCCcc----ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        382 VVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK----QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                                +.|.....+.+...|.+.+..-    ........++.|.|.+++.+|+|.|+|.|.|..|..+..+.+.|
T Consensus       332 ----------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          332 ----------LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV  401 (404)
T ss_dssp             ----------EECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             ----------EEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence                      1222222222233333221110    01112234568999999999999999999999999999998887


Q ss_pred             cc
Q psy10487        458 ME  459 (610)
Q Consensus       458 ~~  459 (610)
                      .+
T Consensus       402 ~d  403 (404)
T 3p3y_A          402 LD  403 (404)
T ss_dssp             C-
T ss_pred             Ee
Confidence            64

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=4.6e-17  Score=163.58  Aligned_cols=152  Identities=24%  Similarity=0.279  Sum_probs=106.0

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .++++|++++|.++.++...+     .+|+.|+|++|.|..+.+..|..+++|++|+|++|+|..++..  ..+++|++|
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             CCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            378999999999999986653     4899999999999999999999999999999998888876542  455666666


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      +|++|.++.++. .+..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|+++.++...|..+++|+.|++++|.+.
T Consensus        83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            666666655533 3455556666666666665555555555556666666666665555555555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=8.2e-17  Score=178.60  Aligned_cols=131  Identities=21%  Similarity=0.378  Sum_probs=98.2

Q ss_pred             cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..+..+..+|..+   ..+|++|+|++|.|+.+++..|.  ++.+|++|+|++|.|..+.+..|+++++|++|+|+
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            44556666666676543   24678888888888777777776  67788888888888887777777788888888888


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                      +|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|.|..+.
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            88888777777777788888888888887777777777777888887777776654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.70  E-value=3.5e-17  Score=171.22  Aligned_cols=182  Identities=18%  Similarity=0.213  Sum_probs=120.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEeccCCc---cceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +|.|.. +.+..+.+|+.++|.|.+.|.|.|.|.|+|+  |..+.....   ........    ...+.|.|.+++.+|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~   75 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ----HGSSSLHIKDVKLSDS   75 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC----SSEEEEEEESCCGGGC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc----CCcceEEEcccChhhC
Confidence            355555 6667788899999999999999999999999  888765321   11111100    1246899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM  412 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  412 (610)
                      |.|+|.|.|..|..+..+.|.|..   +|.+........+..+..            +.+.|.....  +...|.+.+..
T Consensus        76 G~Y~C~a~n~~g~~~~~~~l~V~~---~P~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~~~i~W~~~g~~  140 (389)
T 2jll_A           76 GRYDCEAASRIGGHQKSMYLDIEY---APKFISNQTIYYSWEGNP------------INISCDVKSNPPASIHWRRDKLV  140 (389)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEE---EEEECCSCCEEEECTTCC------------EEEEECEEEESCCEEEEEETTEE
T ss_pred             EEEEEEEEeCCCCcceEEEEEEEe---CCEEecCcceEEeccCCE------------EEEEEEEEecCCCeEEEEECCcc
Confidence            999999999999999999998843   344443333222222221            1223333332  23333332211


Q ss_pred             cc-----cc--cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        413 KQ-----SV--SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       413 ~~-----~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      -.     .+  ........|.|.+++.+|+|.|+|.|.|..|..+....+.+.+.|
T Consensus       141 l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  196 (389)
T 2jll_A          141 LPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP  196 (389)
T ss_dssp             SSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred             CCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC
Confidence            00     11  111234579999999999999999999999998888887765543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.5e-16  Score=161.45  Aligned_cols=165  Identities=23%  Similarity=0.369  Sum_probs=136.3

Q ss_pred             CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      -+.+++.+.+++.+|. +  ..+|++|+|++|.|+.++.  +.  ++++|++|+|++|.+..+.  .|..+++|++|+|+
T Consensus        43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            4678888888888873 3  3588999999999988876  55  6889999999999988874  58888999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      +|++..+++  |..+++|++|+|++|.++.+.+  +..+++|+.|+|++|+++.+.+  +..+++|+.|++++|.++.+.
T Consensus       116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            999888754  8888899999999998888765  7788889999999998888754  778888999999999888876


Q ss_pred             cccccCCCcccEEecCCCcccc
Q psy10487        194 ESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      .  +..+++|+.|++++|.+..
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCB
T ss_pred             h--hcCCCCCCEEEccCCccCc
Confidence            5  6778888889998888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=7.3e-17  Score=169.35  Aligned_cols=173  Identities=20%  Similarity=0.301  Sum_probs=152.2

Q ss_pred             cEEEcCCCCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      ..+.+........+..+ ..+++.|++++|.++.++...|.  ++++|++|+|++|.+..+.+.+|..+++|++|+|++|
T Consensus        26 ~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  103 (390)
T 3o6n_A           26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN  103 (390)
T ss_dssp             CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             eeeecccccccccccccccCCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCC
Confidence            34455554444333333 36899999999999999999888  7899999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      ++..+++..|.++++|++|+|++|.++.++...|.++++|+.|+|++|++..+.+..|..+++|+.|++++|.++.+.  
T Consensus       104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--  181 (390)
T 3o6n_A          104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--  181 (390)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred             CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--
Confidence            999999999999999999999999999999888899999999999999999998888999999999999999999875  


Q ss_pred             cccCCCcccEEecCCCccc
Q psy10487        196 VFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~  214 (610)
                       +..+++|+.+++++|.+.
T Consensus       182 -~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          182 -LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             -GGGCTTCSEEECCSSCCS
T ss_pred             -cccccccceeeccccccc
Confidence             345678888999888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.1e-16  Score=162.21  Aligned_cols=165  Identities=24%  Similarity=0.332  Sum_probs=148.6

Q ss_pred             CcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         36 KKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      -+.++..+++++.++. +.  .+|++|+|++|.|+.++  .+.  .+++|++|+|++|.+..+.+  |..+++|++|+|+
T Consensus        65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  137 (308)
T 1h6u_A           65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD  137 (308)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence            4789999999998886 43  58999999999999985  455  79999999999999999864  8999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      +|++..+.+  |..+++|+.|+|++|.++.+..  +..+++|+.|+|++|+++.+.+  +..+++|+.|+|++|+++.+.
T Consensus       138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            999999876  8899999999999999999876  8899999999999999998864  788999999999999999887


Q ss_pred             cccccCCCcccEEecCCCcccc
Q psy10487        194 ESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      +  +..+++|+.|++++|++.+
T Consensus       212 ~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 P--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GTTCTTCCEEEEEEEEEEC
T ss_pred             c--ccCCCCCCEEEccCCeeec
Confidence            4  7889999999999999865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=152.15  Aligned_cols=125  Identities=23%  Similarity=0.304  Sum_probs=84.6

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      +.++++++.++.++...     ..+|++|+|++|++..+.+..|..+++|++|+|++|+|..+++..|..+++|++|+|+
T Consensus        10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            45677777777776443     3367777777777777777777777777777777777777776667777777777777


Q ss_pred             CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      +|.++.+....|..+++|+.|+|++|+|+.+.+..|..+++|+.|++++|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            77777666666666666666666666666665544555555555555544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.69  E-value=9.5e-18  Score=156.45  Aligned_cols=177  Identities=16%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...........       ..+.|.|.+++.+|+|.|+|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C   74 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-------ANNNLQILNINKSDEGIYRC   74 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC-------TTSCEEETTCCGGGCEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe-------cCCCEEEeeCCHhHCcEEEE
Confidence            57777888889999999999999999999999999999887764332222211       12479999999999999999


Q ss_pred             EeecCCccee--EEEEEEcCccccccccccCCcc--eeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCC--
Q psy10487        340 YAENIRGNAS--GEISLDLPEINLATTLSKTDSW--YMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGK--  411 (610)
Q Consensus       340 ~a~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--  411 (610)
                      .|.|..+...  ..+.+.|..   +|.+......  ..+..+..            +.+.|...+.  +...|.+.+.  
T Consensus        75 ~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~------------v~l~C~~~g~p~~~v~W~~~g~~~  139 (189)
T 2v5t_A           75 EGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEE------------MTFSCRASGSPEPAISWFRNGKLI  139 (189)
T ss_dssp             EEEETTTTEEEEEEEEEEEEE---EEEEECSCCEEEEETTSCCC------------EEEECEEEEESCCEEEEEETTEEC
T ss_pred             EEEEcCCCceEEEEEEEEecC---CCCcccccccccccccCCCc------------EEEEEEEccCCCCeEEEEECCEEC
Confidence            9999976543  445555532   2222221111  11111111            1223333222  2223332221  


Q ss_pred             -ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        412 -MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       412 -~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                       ..........+..|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus       140 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          140 EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence             11112223345679999999999999999999999999888887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=1.2e-16  Score=160.65  Aligned_cols=166  Identities=24%  Similarity=0.367  Sum_probs=138.2

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.+++.+++++.++. ....+|++|+|++|.|+.+++  +.  ++++|++|+|++|.+..++.  |..+++|++|+|++
T Consensus        48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            3678888888888874 123689999999999988876  55  68899999999999888753  88899999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |+|..+  ..+..+++|+.|+|++|.++.+  ..+..+++|+.|+|++|+|..+.+  +..+++|+.|++++|.++.++.
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh
Confidence            999887  3578889999999999999887  357888999999999999988865  7888999999999999988753


Q ss_pred             ccccCCCcccEEecCCCcccc
Q psy10487        195 SVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~~c  215 (610)
                        +..+++|+.|++++|++..
T Consensus       196 --l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          196 --LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --GTTCTTCSEEEEEEEEEEC
T ss_pred             --hccCCCCCEEECcCCcccC
Confidence              7788899999999988754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.69  E-value=6.2e-17  Score=165.71  Aligned_cols=203  Identities=15%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             CCCC-CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSH-PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~-~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+ .|+|.+.+..+..... .....+.-+|.+........+.+|+.+.|.|.+.|.| .|.+.|+|++..+.......
T Consensus        99 ~D~Gs~Y~C~a~n~~g~~~~~-~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~  177 (329)
T 3oq3_B           99 NDSHRRYLCTVTTKNGDCVQG-IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY  177 (329)
T ss_dssp             GGGGCCEEEEEECTTSCEEEE-EEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSE
T ss_pred             HhCCCcEEEEEEeCCCceeeE-EEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceE
Confidence            3677 8999987765431111 1112333456655555555577899999999999999 99999999999885333211


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC--CcceeEE----EEEEcCccccc--cccccCCcceeehhhhHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI--RGNASGE----ISLDLPEINLA--TTLSKTDSWYMLVLGISV  380 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~~----~~L~V~~~~~~--p~~~~~~~~~~~~~~~~~  380 (610)
                      .         ...+.|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.|...+..  |.+  .+....+..+.. 
T Consensus       178 ~---------~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~-  245 (329)
T 3oq3_B          178 S---------QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEP-  245 (329)
T ss_dssp             E---------EETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSC-
T ss_pred             e---------cCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCC-
Confidence            1         11358999999999999999999997  7654433    66777433211  222  222222222222 


Q ss_pred             HHHHHHHhheeEEEEEEeeecc---c---ccccccCCc--cc-ccccc-------ccccceeeeeeeeccCc-ceeeeec
Q psy10487        381 CVVSVIVSIGMSFCVCRAHEHK---N---KRRKRKGKM--KQ-SVSFN-------DQEKKLLDVSITTTDRH-TGSCEAL  443 (610)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~--~~-~~~~~-------~~~~~L~i~~v~~~D~G-~Y~C~A~  443 (610)
                                 +.+.|...+.+   .   ..|.+.+..  .. .....       .....|.|.+++.+|+| .|+|.|.
T Consensus       246 -----------~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~  314 (329)
T 3oq3_B          246 -----------ANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGH  314 (329)
T ss_dssp             -----------EEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEE
T ss_pred             -----------EEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEE
Confidence                       23455555544   2   133332211  00 00000       13567999999999999 9999999


Q ss_pred             CCCcceeeeeeccc
Q psy10487        444 GSQPDMELIEQSLA  457 (610)
Q Consensus       444 N~~G~~~~~~~l~v  457 (610)
                      |..|..+..+.|.+
T Consensus       315 N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          315 NYYFDKTLTTTVVL  328 (329)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ecCCceEEEEEEEe
Confidence            99999888777654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.69  E-value=9.7e-17  Score=155.99  Aligned_cols=177  Identities=20%  Similarity=0.212  Sum_probs=113.6

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............     ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   97 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR-----HQQWSLVMESVVPSDRGNYTCVVENKFGS   97 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeee-----ccceEEEEEeCCcccCEEEEEEEeecCCc
Confidence            4678899999999999999999999999999988655432111100     11248999999999999999999999999


Q ss_pred             eeEEEEEEcCcccc-ccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCC-cccccc-----
Q psy10487        348 ASGEISLDLPEINL-ATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGK-MKQSVS-----  417 (610)
Q Consensus       348 ~~~~~~L~V~~~~~-~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-----  417 (610)
                      ....+.|.|..... .|.+. ..+....+..+...            .+.|.....  +...|.+... .+..+.     
T Consensus        98 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v------------~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~  165 (241)
T 3grw_A           98 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV------------EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP  165 (241)
T ss_dssp             EEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCE------------EEEEEEECSSCCEEEEEEECCSSSCSSCTTTCC
T ss_pred             eEEEEEEEEeccCCCCceeecCCCccceecCCCEE------------EEEEEEecCCCCEEEEEEcccCCCcccCCCCce
Confidence            88888888854222 12211 11222222222111            222332222  2222322100 111110     


Q ss_pred             -----------ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        418 -----------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       418 -----------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                                 .......|.|.+++.+|+|.|+|.|.|..|..+....|.|.++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             CEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             eeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence                       11234579999999999999999999999999999888887654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.69  E-value=4.5e-18  Score=178.79  Aligned_cols=214  Identities=17%  Similarity=0.123  Sum_probs=134.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+...+..........+..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.........
T Consensus        92 ~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~  171 (403)
T 3laf_A           92 PDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV  171 (403)
T ss_dssp             SSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSE
T ss_pred             CcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEE
Confidence            36788999987554443322222223334677777778889999999999999999999999999999877533221111


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcccc---ccccccCCcceeehhhhHHHHHHHH
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINL---ATTLSKTDSWYMLVLGISVCVVSVI  386 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~  386 (610)
                      .      ....+.|.|.+++.+|+|.|+|.|.|..|.. ...+.+.|...+.   .+.+...+....+..+..+.     
T Consensus       172 ~------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~-----  240 (403)
T 3laf_A          172 V------VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV-----  240 (403)
T ss_dssp             E------ECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEE-----
T ss_pred             E------EcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEE-----
Confidence            1      1122489999999999999999999998864 3456666532221   11222222222222222211     


Q ss_pred             HhheeEEEEEEeeecccccccccCCc---cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        387 VSIGMSFCVCRAHEHKNKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                           +.|.....+.+...|.+....   .........+..|.|.+++.+|+|.|+|.|.|..|..+....+.|..+
T Consensus       241 -----l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  312 (403)
T 3laf_A          241 -----LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP  312 (403)
T ss_dssp             -----ECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             -----EEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC
Confidence                 122222222222223222111   111111234567999999999999999999999999999888888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=8.6e-17  Score=151.95  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=131.5

Q ss_pred             CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      ..+|+.|+|++|.|+.++  .+.  .+++|++|++++|.+..+.  .|..+++|++|+|++|++....+..|..+++|++
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             cCCccEEeccCCCccChH--HHh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            358999999999999887  355  6889999999999887774  5889999999999999999866777999999999


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP  212 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~  212 (610)
                      |+|++|.++...+..|..+++|+.|+|++|+ +..+.  .+..+++|+.|++++|.++++.  .+..+++|+.|++.+|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence            9999999998666778899999999999998 88874  5889999999999999999876  57789999999999998


Q ss_pred             cc
Q psy10487        213 WC  214 (610)
Q Consensus       213 ~~  214 (610)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.69  E-value=1.1e-17  Score=159.05  Aligned_cols=180  Identities=14%  Similarity=0.120  Sum_probs=112.2

Q ss_pred             eeeecceEeecCceEEEEEEEEecC----CCeEEEEeC----------------CEEeccC--C-ccceeeccCCceeee
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDP----EPTILWLLN----------------GQVLHNS--S-FDLLEEEEGDALFEK  320 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~----------------g~~l~~~--~-~~~~~~~~~~~~~~~  320 (610)
                      ...+..+.+.+|++++|.|.+.+.|    .+.+.|+++                +..+...  . ..+...... .....
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~   82 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN-DVKSG   82 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS-CGGGT
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc-CccCC
Confidence            3455678899999999999999887    579999983                3322210  0 000000000 00012


Q ss_pred             eeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-e
Q psy10487        321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-H  399 (610)
Q Consensus       321 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  399 (610)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+..+.....   ..+..+..            +.+.|.. .
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~---~~~~~g~~------------v~l~C~~~~  147 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVD---GSEEIGND------------FKLKCEPKE  147 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEE---SCCBTTCC------------EEEEEECSB
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeee---cceecCCc------------EEEEecCCC
Confidence            358999999999999999999999999888999988543322221111   11111111            1334443 2


Q ss_pred             ecc--cccccccCC---ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        400 EHK--NKRRKRKGK---MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       400 ~~~--~~~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ..+  ...|.+...   ..........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       148 g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          148 GSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             CCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            222  233333111   111112234456899999999999999999999999999999998874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.69  E-value=6e-17  Score=164.65  Aligned_cols=153  Identities=19%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccc--hh--hhcCCCCCcEEEccCCCCCCC---CcccccC
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH--RD--TFKYLTILVEVDLSDNQIAWL---HQDTFLG  127 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~--~~--~f~~l~~L~~LdLs~n~l~~l---~~~~f~~  127 (610)
                      .+|++|+|++|+|+.+++..|.  ++++|++|+|++|.+....  +.  .|..+++|++|+|++|+|..+   ....|.+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence            3455555555555555444444  4455555555555443210  11  124455555555555555422   2223344


Q ss_pred             CCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEE
Q psy10487        128 NDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTL  206 (610)
Q Consensus       128 l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  206 (610)
                      +++|++|+|++|.++...+ ..+..+++|+.|+|++|+|+.++.. +.  ++|+.|+|++|+|++++.  +..+++|+.|
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L  301 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNL  301 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEE
Confidence            4555555555555555432 2334445555555555555544322 11  455555555555555532  4455555555


Q ss_pred             ecCCCccc
Q psy10487        207 SLDGNPWC  214 (610)
Q Consensus       207 ~l~~N~~~  214 (610)
                      ++++|++.
T Consensus       302 ~L~~N~l~  309 (312)
T 1wwl_A          302 SLKGNPFL  309 (312)
T ss_dssp             ECTTCTTT
T ss_pred             eccCCCCC
Confidence            55555543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.69  E-value=6.7e-17  Score=149.38  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=106.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...+....+.+|++++|.|.+.|.|.|. +.|++++..+....                +.|.|.+++.+|+|.|+
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~L~i~~~~~~d~G~Y~   70 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------------SSYFIDAATVNDSGEYR   70 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------------SEEEESSCCGGGCEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc----------------eEEEEeCCCcccCEEEE
Confidence            57788888888999999999999999999887 88999998876432                38999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF  418 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (610)
                      |.|.|..+..  .+.|.|..   .+.....+......+. .            +.+.|.....+......|.+.+..+..
T Consensus        71 C~~~n~~~s~--~~~l~V~~---~~~~~~~~~~~~~~g~-~------------~~l~C~~~~~~~~~~~~W~k~g~~~~~  132 (175)
T 1fnl_A           71 CQTNLSTLSD--PVQLEVHI---GWLLLQAPRWVFKEED-P------------IHLRCHSWKNTALHKVTYLQNGKDRKY  132 (175)
T ss_dssp             EECSSSCCCC--CEEEEEEC---SSEEEECSCSEEETTC-C------------EEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred             EEeeCCcccc--cEEEEEeC---CCceeeCCCceecCCC-C------------EEEEEEcCCCCCceEEEEEECCeEccC
Confidence            9999976644  44555531   1122222221111111 1            234554443332222344444444444


Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ...+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus       133 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          133 FHHNSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             EEECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            456678999999999999999999997664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=8.2e-17  Score=161.38  Aligned_cols=178  Identities=24%  Similarity=0.299  Sum_probs=140.1

Q ss_pred             cEEEcCCCC-CCccC-ccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKDAN-FTALP-STL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~~~-l~~lP-~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      +.++..++. ++.++ ..+  ..+|++|+|++|.|+.+.+..|.  ++++|++|+|++|.+..+.+..|..+++|++|+|
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            456666664 66663 233  24677777777777777777776  6788888888888888888778888888889999


Q ss_pred             cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487        113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      ++|++..+++..|.++++|+.|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.+...
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            88888888888888899999999999999998888899999999999999999999988899999999999999998754


Q ss_pred             CcccccCCCcccEEecCCCcccccC
Q psy10487        193 SESVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       193 ~~~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      .... +-+..++.+....+.+.|.-
T Consensus       241 ~~~~-~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          241 CRAR-PLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             GGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred             CCcH-HHHHHHHhcccccCccccCC
Confidence            3311 11233455566677777753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=8.6e-17  Score=175.47  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=138.0

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      .+.++|++++++.+|..++.++++|+|++|.|+.+.+..|.  ++.+|++|+|++|.|..+.+.+|.++++|++|||++|
T Consensus         2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            36899999999999999999999999999999999998998  7999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCHHHhhcCccc--cccccccccc--c
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL--ESLNLNGNRL--K  190 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~  190 (610)
                      +|..++..   .+++|++|+|++|.++.+. +..|.++++|+.|+|++|+|..   ..+..+.+|  +.|++++|.+  .
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            99988765   7899999999999999864 4679999999999999999976   356677777  9999999998  4


Q ss_pred             ccCcccccC
Q psy10487        191 HLSESVFFP  199 (610)
Q Consensus       191 ~~~~~~~~~  199 (610)
                      ...+..+..
T Consensus       154 ~~~~~~l~~  162 (520)
T 2z7x_B          154 KEDPEGLQD  162 (520)
T ss_dssp             SCCTTTTTT
T ss_pred             ccccccccc
Confidence            444433433

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.69  E-value=3.8e-17  Score=151.12  Aligned_cols=167  Identities=17%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...+..+.+.+|++++|.|.+.+.|.| .+.|++++..+....                +.|.|.+++.+|+|.|+
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----------------~~L~i~~v~~~d~G~Y~   67 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEYK   67 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc----------------eEEEEeccceecCEEEE
Confidence            5788888888899999999999999999886 699999998776432                38999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF  418 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (610)
                      |.|.|..+.....  |.|..   .+.....+......+ ..            +.+.|............|.+.+..+..
T Consensus        68 C~~~~~~~s~~~~--l~V~~---~~~~~~~~~~~~~~g-~~------------~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (176)
T 1f2q_A           68 CQHQQVNESEPVY--LEVFS---DWLLLQASAEVVMEG-QP------------LFLRCHGWRNWDVYKVIYYKDGEALKY  129 (176)
T ss_dssp             EECTTSSCCCCEE--EEEEC---SSEEEEESCSEEETT-SC------------EEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred             EEcCCccccccEE--EEEeC---cceeecCCcceeeCC-CC------------EEEEEEecCCCCceEEEEEECCEEEee
Confidence            9999977655444  44421   111111122111111 11            133444322221112333333333334


Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcc-eeeeeecccccC
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPD-MELIEQSLAMEQ  460 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~~~  460 (610)
                      ...+..|.|.+++.+|+|.|+|.|.|..|. .+....+.|..+
T Consensus       130 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          130 WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence            455678999999999999999999997544 333355555543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.68  E-value=8.4e-17  Score=175.60  Aligned_cols=209  Identities=15%  Similarity=0.109  Sum_probs=130.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeec---ceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKES---MVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSF  306 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~---~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~  306 (610)
                      .+.+.|+|.+.+..+.... .+... +..+|.+...+.   ...+.+|+.++|.|.+.|.|.|. +.|+++|..+.....
T Consensus       283 ~D~G~Y~C~a~n~~g~~~~-~~~l~-V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~  360 (524)
T 2ec8_A          283 NDSGVFMCYANNTFGSANV-TTTLE-VVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE  360 (524)
T ss_dssp             TTCEEEEEEEECSSCEEEE-EEEEE-EESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC
T ss_pred             HHCEEEEEEEEecCCceEE-EEEEE-EeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc
Confidence            4667899998775543322 22222 235677766553   68889999999999999999999 999999998876553


Q ss_pred             cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH
Q psy10487        307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI  386 (610)
Q Consensus       307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  386 (610)
                      .......+ +.....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..   +|.+......   ..+         
T Consensus       361 ~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~---~P~i~~~~~~---~~g---------  424 (524)
T 2ec8_A          361 DYPKSENE-SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT---KPEILTYDRL---VNG---------  424 (524)
T ss_dssp             CEESCCSS-SCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE---EEEEEEEECC---SSS---------
T ss_pred             ceeEEccC-CCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec---CCeEeecccC---cCc---------
Confidence            22222221 1123457999999999999999999999999999999999843   3333322221   011         


Q ss_pred             HhheeEEEEEEeeecccccccccCCcc----------cc---ccccccccceee---eeee-eccCcceeeeecCCCcce
Q psy10487        387 VSIGMSFCVCRAHEHKNKRRKRKGKMK----------QS---VSFNDQEKKLLD---VSIT-TTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~L~i---~~v~-~~D~G~Y~C~A~N~~G~~  449 (610)
                          .+.|.....+.+...|.+.....          ..   ......++.+.+   .++. .+|+|.|+|.|.|..|..
T Consensus       425 ----~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~  500 (524)
T 2ec8_A          425 ----MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT  500 (524)
T ss_dssp             ----CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEE
T ss_pred             ----EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCce
Confidence                23455444444444444432110          00   011133444543   3333 589999999999999999


Q ss_pred             eeeeecccccCC
Q psy10487        450 ELIEQSLAMEQP  461 (610)
Q Consensus       450 ~~~~~l~v~~~p  461 (610)
                      +..+.|.|.|++
T Consensus       501 ~~~~~l~V~e~~  512 (524)
T 2ec8_A          501 SAYFNFAFKGNN  512 (524)
T ss_dssp             ECCCCCCC----
T ss_pred             EEEEEEEEecCC
Confidence            999999988754

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.68  E-value=6.4e-17  Score=152.41  Aligned_cols=167  Identities=15%  Similarity=0.098  Sum_probs=107.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|++..+.......  ...     ...+.|.|.+++.+|+|.|+|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~~-----~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP--LEP-----KNKARFSIPSMTEDYAGRYRC   75 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC--CSS-----SSEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc--ccC-----CceEEEEeccCCcccCceEEE
Confidence            5777777776 8899999999999999 789999999998765322110  000     123589999999999999999


Q ss_pred             EeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccCCcccc-
Q psy10487        340 YAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKGKMKQS-  415 (610)
Q Consensus       340 ~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  415 (610)
                      .|.|..|  ..+..+.|.|.....+|.+...+......+ ..+            .+.|.....+ ...|.+.+..... 
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G-~~v------------~L~C~~~~~~~~~~w~k~g~~~~~~  142 (196)
T 3p2t_A           76 YYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSG-KSV------------TLLCQSRSPMDTFLLCKERAAHPLL  142 (196)
T ss_dssp             EEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTT-CCE------------EEEEEEEEEEEEEEEEETTCCCGGG
T ss_pred             EEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCC-CeE------------EEEEecCCCCCEEEEEeCCCcccce
Confidence            9999998  345677777754444444444333222111 111            2233322211 1112221111000 


Q ss_pred             -----ccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        416 -----VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       416 -----~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                           .......+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       143 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  180 (196)
T 3p2t_A          143 CLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSH  180 (196)
T ss_dssp             SEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGT
T ss_pred             eecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCC
Confidence                 011234568999999999999999999998874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=1.2e-16  Score=177.34  Aligned_cols=173  Identities=20%  Similarity=0.291  Sum_probs=151.8

Q ss_pred             cEEEcCCCCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      ..++|....+...+..+ ..+++.|++++|.+..++...|.  ++++|+.|+|++|.|..+.+.+|..+++|++|+|++|
T Consensus        32 ~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  109 (597)
T 3oja_B           32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN  109 (597)
T ss_dssp             CEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC
Confidence            34555554443333333 36899999999999999999888  7999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      .|..+++..|.++++|++|+|++|.++.+++..|.++++|+.|+|++|.|..+.+..|..+++|+.|+|++|.++.++. 
T Consensus       110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-  188 (597)
T 3oja_B          110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-  188 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred             cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh-
Confidence            9999999999999999999999999999999889999999999999999999998899999999999999999998854 


Q ss_pred             cccCCCcccEEecCCCccc
Q psy10487        196 VFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~  214 (610)
                        ..+++|+.|++++|.+.
T Consensus       189 --~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          189 --SLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             --GGCTTCSEEECCSSCCS
T ss_pred             --hhhhhhhhhhcccCccc
Confidence              44667888888888764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.68  E-value=2.2e-17  Score=156.82  Aligned_cols=187  Identities=18%  Similarity=0.144  Sum_probs=107.3

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      ..+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ...............+.|.|.+++.+|+|.|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~   81 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence            4556667888999999999999999999999999998765321100  00000011111122368999999999999999


Q ss_pred             EEeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHH-HHhheeEEEEEEeeec-ccccccc--cCCc
Q psy10487        339 CYAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSV-IVSIGMSFCVCRAHEH-KNKRRKR--KGKM  412 (610)
Q Consensus       339 C~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~~  412 (610)
                      |.|.|..|  .....+.|.|...+..+....   ...+..+..+.+.|. +.+.+...+.|.+... .-.....  ....
T Consensus        82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~  158 (212)
T 1f97_A           82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM  158 (212)
T ss_dssp             EEEEETTSSSEEEEEEEEEEEBCCCCCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS
T ss_pred             EEEEccCCCcccEEEEEEEEEcCCCCcccCC---ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccccccc
Confidence            99999987  456677777743332222211   111111111111111 1111111222222211 1100000  0000


Q ss_pred             cccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      ............|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       159 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  196 (212)
T 1f97_A          159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM  196 (212)
T ss_dssp             SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCE
T ss_pred             CceeEecCCCceEEEEecChhhCcEEEEEEccccCCcc
Confidence            01112224567899999999999999999999999873

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=4.5e-17  Score=175.91  Aligned_cols=173  Identities=20%  Similarity=0.233  Sum_probs=141.0

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ  116 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~  116 (610)
                      ..++.+++.++.+|..  .+|++|+|++|.|+.++..     .+++|+.|+|++|.|..+.+..|+.+++|++|+|++|+
T Consensus        83 ~~L~Ls~N~l~~l~~~--~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A           83 RTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CEEECCSSEEEEEEEC--TTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             CEEEecCCcCCCCCCC--CCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence            3444444445444422  4566666666666665543     36789999999999999998899999999999999999


Q ss_pred             CCCCCccccc-CCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        117 IAWLHQDTFL-GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       117 l~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      |..+.+..|. .+++|+.|+|++|.++.+..  +..+++|+.|+|++|+|+.+++. |..+++|+.|+|++|.+++++..
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred             CCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh
Confidence            9998777776 78999999999999999865  44689999999999999999765 88899999999999999998764


Q ss_pred             cccCCCcccEEecCCCcccccCCch
Q psy10487        196 VFFPTPNLKTLSLDGNPWCCDCHLR  220 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~c~c~l~  220 (610)
                       +..+++|+.|++++|++.|++...
T Consensus       233 -l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          233 -LRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             -CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             -hccCCCCCEEEcCCCCCcCcchHH
Confidence             677899999999999999876433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=153.87  Aligned_cols=125  Identities=24%  Similarity=0.373  Sum_probs=85.7

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccc-hhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH-RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL  136 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L  136 (610)
                      +.|++++|.++.++....     ..+++|+|++|.|..+. ...|..+++|++|+|++|+|+.+.+..|.++++|++|+|
T Consensus        14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            468888888888775432     24677888888777774 345777777777777777777777666777777777777


Q ss_pred             eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      ++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            777777666666666666666666666666665555555555555555555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.6e-16  Score=157.30  Aligned_cols=163  Identities=22%  Similarity=0.307  Sum_probs=141.2

Q ss_pred             EEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCC
Q psy10487         39 ALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI  117 (610)
Q Consensus        39 ~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l  117 (610)
                      +++..++++.++. .-..+|+.|++++|.|+.++  .+.  .+++|++|+|++|.|..+.+  |..+++|++|+|++|+|
T Consensus        24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             HHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence            4456677777762 12358999999999999987  455  68999999999999999987  99999999999999999


Q ss_pred             CCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc
Q psy10487        118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF  197 (610)
Q Consensus       118 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  197 (610)
                      ..++.  +.. .+|+.|+|++|.++.+.  .+..+++|+.|+|++|+|+.+.  .+..+++|+.|++++|+++.+  ..+
T Consensus        98 ~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A           98 KNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             SCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             CCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHh
Confidence            99875  333 89999999999999985  4889999999999999999984  688999999999999999998  467


Q ss_pred             cCCCcccEEecCCCccccc
Q psy10487        198 FPTPNLKTLSLDGNPWCCD  216 (610)
Q Consensus       198 ~~~~~L~~l~l~~N~~~c~  216 (610)
                      ..+++|+.|++++|++.+.
T Consensus       169 ~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECC
T ss_pred             ccCCCCCEEeCCCCcccCC
Confidence            8899999999999998765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=3e-16  Score=144.46  Aligned_cols=132  Identities=28%  Similarity=0.466  Sum_probs=104.6

Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG  186 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  186 (610)
                      .++|++++|+|..++...   ..+|++|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456777777777776543   26777888888888888777788888888888888888888777778888888888888


Q ss_pred             ccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC--------CCCCCCCCCC
Q psy10487        187 NRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL--------YSHPLSCTEP  241 (610)
Q Consensus       187 n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l--------~~~~~~C~a~  241 (610)
                      |+|+.++...|..+++|+.|++++|+|.|+|. +.++..|+.....        +...+.|..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~  151 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT  151 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence            88888888888889999999999999999995 9999999986431        3346678654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.67  E-value=1e-16  Score=174.98  Aligned_cols=219  Identities=10%  Similarity=0.057  Sum_probs=131.6

Q ss_pred             CCCCCCCCCCCCccCCCc-c-ccccccc---ccCCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQTKH-W-DDVKAQE---FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~-~-~~v~~~~---~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~  303 (610)
                      .+.+.|.|.+.+..+... + ..+....   ...+|.+...+....+.+|+.++|.|.+.|.|+|  .|+|+++|..+..
T Consensus        80 ~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (523)
T 2rcj_C           80 EDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA  159 (523)
T ss_pred             hhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCC
Confidence            467889999887543211 1 1111111   1346777777777777789999999999998765  8999999988765


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC-ccccccccccCCcceeehhhhHHHH
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP-EINLATTLSKTDSWYMLVLGISVCV  382 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~-~~~~~p~~~~~~~~~~~~~~~~~~~  382 (610)
                      ...........++.+...+.|.|.+++.+|+|.|+|.|.|..|....++.+.+. ....+|.+...........+..+  
T Consensus       160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~--  237 (523)
T 2rcj_C          160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTA--  237 (523)
T ss_pred             ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCce--
Confidence            432221122223334445689999999999999999999999987776665331 12223333211111111111221  


Q ss_pred             HHHHHhheeEEEEEEeeec-c---cccccccCCccc-----ccccc----ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        383 VSVIVSIGMSFCVCRAHEH-K---NKRRKRKGKMKQ-----SVSFN----DQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~-----~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                                .+.|...+. +   ...|.+.+....     .+...    .....|.|.+++.+| |.|+|.|.|..|..
T Consensus       238 ----------~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          238 ----------ALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             ----------EEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence                      223333222 1   122322221100     00000    112379999999999 99999999999998


Q ss_pred             eeeeecccccCCC
Q psy10487        450 ELIEQSLAMEQPP  462 (610)
Q Consensus       450 ~~~~~l~v~~~pp  462 (610)
                      .....+.+...|+
T Consensus       307 ~~~~~l~v~~~P~  319 (523)
T 2rcj_C          307 KVDKRVEPLSLPS  319 (523)
T ss_pred             ceEEecCCCcCce
Confidence            8888877665543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.67  E-value=3e-17  Score=171.62  Aligned_cols=204  Identities=15%  Similarity=0.151  Sum_probs=126.1

Q ss_pred             CC-CCCCCCCCCccCCCcccccc--cccccCC-----Cce-eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEec
Q psy10487        232 YS-HPLSCTEPGMLQTKHWDDVK--AQEFACP-----PNV-TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH  302 (610)
Q Consensus       232 ~~-~~~~C~a~~~l~g~~~~~v~--~~~~~c~-----P~i-~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~  302 (610)
                      +. +.|+|.+.+...+.......  ...+..+     |.+ ........+.+|+.++|.|.+.|.|.|.+.|++++..+.
T Consensus       175 d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~  254 (388)
T 2v5m_A          175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT  254 (388)
T ss_dssp             GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSS
T ss_pred             ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCc
Confidence            45 88999987765443211110  0011111     111 111234567889999999999999999999999754322


Q ss_pred             cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHH
Q psy10487        303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCV  382 (610)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~  382 (610)
                      ....   .. .........+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...   |.+...+....+..+..   
T Consensus       255 ~~~~---~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---p~~~~~~~~~~v~~g~~---  324 (388)
T 2v5m_A          255 RKQA---VV-LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP---LSAKIDPPTQTVDFGRP---  324 (388)
T ss_dssp             CEEE---CC-CSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE---EEEEEESSEEEECTTSC---
T ss_pred             cccc---cc-ccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC---CccccCCCcEEecCCCC---
Confidence            1100   00 00001123458999999999999999999999999988888888532   22322232222222211   


Q ss_pred             HHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        383 VSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                               +.+.|...+.+... ..|.+.+..+  ...++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus       325 ---------~~l~C~~~g~p~p~-i~W~~~g~~i--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          325 ---------AVFTCQYTGNPIKT-VSWMKDGKAI--GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             ---------EEEEEEEEEECCCE-EEEEETTEEC--SCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ---------EEEEEEeccccCCe-EEEEECCEEC--ccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                     13344444333321 3333333322  234578999999999999999999999999999888764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.67  E-value=1.3e-16  Score=159.77  Aligned_cols=205  Identities=14%  Similarity=0.089  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCc-eeeeecceEeecCceEEEEEEEEecCC--CeEEEEeC-CEEeccCCc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN-VTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLN-GQVLHNSSF  306 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~-i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~-g~~l~~~~~  306 (610)
                      .+.+.|+|.+.+..+.. ...+..... .+|. +...+....+.+|+.++|.|.+.+ |.  |.+.|+++ +..+.....
T Consensus        61 ~d~G~Y~C~~~n~~~~~-~~~~~l~V~-~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~  137 (292)
T 4dkd_C           61 QNTGTYRCTEPGDPLGG-SAAIHLYVK-DPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTN  137 (292)
T ss_dssp             GGCSCEEECCCC----C-CEEECCEEC-CSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCC
T ss_pred             ccCEEEEEEEccCCCCc-ceEEEEEEc-CccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCc
Confidence            46788999987765433 222332222 2333 455667788999999999999998 55  78999997 444432221


Q ss_pred             cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcccc-ccccccCCcceeehhhhHHHHHH
Q psy10487        307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINL-ATTLSKTDSWYMLVLGISVCVVS  384 (610)
Q Consensus       307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~-~p~~~~~~~~~~~~~~~~~~~~~  384 (610)
                       ...        ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..... +|.+...+....+..+..     
T Consensus       138 -~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~-----  203 (292)
T 4dkd_C          138 -YSF--------SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEA-----  203 (292)
T ss_dssp             -EEC--------CSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSC-----
T ss_pred             -ccc--------cCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCC-----
Confidence             111        112359999999999999999999998865 3477888754222 444444443332222211     


Q ss_pred             HHHhheeEEEEEEeeecccccccccCCccccccc----------cccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF----------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                             +.+.|.....+......|.+.+..+..          ......|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus       204 -------v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  276 (292)
T 4dkd_C          204 -------AQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF  276 (292)
T ss_dssp             -------EEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEE
T ss_pred             -------EEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEE
Confidence                   133444433332111222222221110          123347999999999999999999999999999888


Q ss_pred             ccccc
Q psy10487        455 SLAME  459 (610)
Q Consensus       455 l~v~~  459 (610)
                      |.|..
T Consensus       277 l~V~~  281 (292)
T 4dkd_C          277 FRVVE  281 (292)
T ss_dssp             ECC--
T ss_pred             EEEee
Confidence            88775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=1.7e-16  Score=181.24  Aligned_cols=177  Identities=17%  Similarity=0.082  Sum_probs=109.5

Q ss_pred             cEEEcCCCCCC-ccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFT-ALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~-~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..++.++ .+|..+  ..+|++|+|++|+++...+..|.  ++++|++|+|++|.+....+..|+.+++|++|+|+
T Consensus       445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            45666666666 555544  24677777777777765555665  56677777777777776666667777777777777


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCc-----------------------------------------------
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-----------------------------------------------  146 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-----------------------------------------------  146 (610)
                      +|++....+..|..+++|+.|+|++|.+.+..+                                               
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            777765555666666666666666665542111                                               


Q ss_pred             -----------------------CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcc
Q psy10487        147 -----------------------GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL  203 (610)
Q Consensus       147 -----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  203 (610)
                                             ..|..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..+..+..++.|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                   112334556666666666665555566666666666666666665555555566666


Q ss_pred             cEEecCCCcccc
Q psy10487        204 KTLSLDGNPWCC  215 (610)
Q Consensus       204 ~~l~l~~N~~~c  215 (610)
                      +.|++++|.+..
T Consensus       683 ~~LdLs~N~l~g  694 (768)
T 3rgz_A          683 NILDLSSNKLDG  694 (768)
T ss_dssp             CEEECCSSCCEE
T ss_pred             CEEECCCCcccC
Confidence            666666666554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.67  E-value=1.8e-16  Score=151.50  Aligned_cols=173  Identities=12%  Similarity=0.041  Sum_probs=104.7

Q ss_pred             eecceEeecC--ceEEEEEEEEecCCCeEEEEeC---CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        266 KESMVIREAG--GNVTMSCYVYGDPEPTILWLLN---GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       266 ~~~~~~v~~G--~~v~l~C~~~g~P~p~v~W~~~---g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      .+..+.+.+|  ++++|.|.+.+ |.|.++|+++   +..+.....  ...+       ..+.|.|.+++.+|+|.|+|.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~--~~~~-------~~~~l~I~~v~~~D~G~Y~C~   82 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNR--ISWD-------SKKGFTIPSYMISYAGMVFCE   82 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSS--CEEE-------TTTEEEEEGGGTTTCSEEEEE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCc--cccc-------CCccEEEccCChhcCceEEEE
Confidence            4577888999  99999999987 8899999884   555443321  1111       123799999999999999999


Q ss_pred             eecCCcceeE-EEEEEcCcccccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc----cccccccCCccc
Q psy10487        341 AENIRGNASG-EISLDLPEINLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK----NKRRKRKGKMKQ  414 (610)
Q Consensus       341 a~N~~G~~~~-~~~L~V~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  414 (610)
                      |.|..+.... .+.|.|.. ...|.+.. ......+..+..+            .+.|.....+    ...|.+.+....
T Consensus        83 a~n~~~~~~s~~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v------------~L~C~~~g~p~~~~~i~W~~~g~~~~  149 (213)
T 2x1w_L           83 AKINDESYQSIMYIVVVVG-YRIYDVVLSPSHGIELSVGEKL------------VLNCTARTELNVGIDFNWEYPSSKHQ  149 (213)
T ss_dssp             EC----CEECCCEEEEECB-CCEEEEEEESCSCEEEETTCCE------------EEEEEEEECTTBCCEEEEECSCSSCC
T ss_pred             EEECCeeEEEEEEEEEEeC-CcccceEEcCCCCeEEcCCCCE------------EEEEEEECCCCCceEEEEEecCCccc
Confidence            9996554333 36777743 12222222 2222122222221            2334433321    123322221100


Q ss_pred             cccc-------------cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        415 SVSF-------------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       415 ~~~~-------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ....             ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          150 HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             SEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             eEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            0000             1223469999999999999999999999999999999998765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.66  E-value=1.6e-16  Score=158.85  Aligned_cols=208  Identities=14%  Similarity=0.113  Sum_probs=128.4

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEe-CCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLL-NGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~-~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+..+.. ...+......-+..+...+....+.+|+.+.|.|.+.|.|.+. +.|++ ++..+..... .
T Consensus        61 ~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~  138 (289)
T 3ejj_X           61 KNTGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-Y  138 (289)
T ss_dssp             GGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCC-E
T ss_pred             ccCEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCcc-E
Confidence            46788999987655442 2222222222222256666788899999999999999988776 99986 5655543322 1


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEee-cCCcceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE-NIRGNASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVI  386 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~  386 (610)
                      ..        ...+.|.|.+++.+|+|.|+|.|. |..|..+..+.|.|.... .+|.+...+....+..+..       
T Consensus       139 ~~--------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~-------  203 (289)
T 3ejj_X          139 FF--------SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA-------  203 (289)
T ss_dssp             EE--------ETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSC-------
T ss_pred             EE--------CCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCc-------
Confidence            11        122479999999999999999999 666667778888885322 3444444443333222221       


Q ss_pred             HhheeEEEEEEeee---cccccccccCCcccc-------ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        387 VSIGMSFCVCRAHE---HKNKRRKRKGKMKQS-------VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       387 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                           +.+.|....   .+...|.+.+..-..       .........|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus       204 -----~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~  278 (289)
T 3ejj_X          204 -----AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ  278 (289)
T ss_dssp             -----EEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEE
T ss_pred             -----EEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEE
Confidence                 122333332   222233322211100       11112356899999999999999999999999999999998


Q ss_pred             cccC
Q psy10487        457 AMEQ  460 (610)
Q Consensus       457 v~~~  460 (610)
                      +.+.
T Consensus       279 ~~~~  282 (289)
T 3ejj_X          279 VVES  282 (289)
T ss_dssp             CC--
T ss_pred             EEec
Confidence            8764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.66  E-value=3.7e-16  Score=165.71  Aligned_cols=182  Identities=10%  Similarity=0.102  Sum_probs=97.7

Q ss_pred             cccCC-----CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC
Q psy10487        256 EFACP-----PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT  330 (610)
Q Consensus       256 ~~~c~-----P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  330 (610)
                      +|.|.     +.+...+..+.+.+|+++.|.|.+.|.|.|.|.|++++..+.....   .....    .....|.|.+++
T Consensus        39 ~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~---~~~~~----~~~~sL~I~~v~  111 (423)
T 3qs7_E           39 DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH---FDLQN----RGVVSMVILKMT  111 (423)
T ss_dssp             -----------------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB---C---------CEEEEEESSCC
T ss_pred             HcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce---ecccc----ceEEEEEEeecC
Confidence            36672     3455666788999999999999999999999999999987654321   00011    122479999999


Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEEcCccccccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccccccc
Q psy10487        331 DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRK  409 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (610)
                      .+|+|.|+|.|.|..|.....+.|.|...   |.+. ..+.. ...+. ..          .+.|.....+.+...|.+.
T Consensus       112 ~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~---p~~~~~~p~~-~~~~~-~~----------~L~C~a~G~P~P~i~W~k~  176 (423)
T 3qs7_E          112 ETQAGEYLLFIQSEATNYTILFTVSIRNT---LLYTLRRPYF-RKMEN-QD----------ALVCISESVPEPIVEWVLC  176 (423)
T ss_dssp             SSSCSEEEEEEEC--CEEEEEEEEEEC--------CEEEEEE-EECSS-SS----------CEEEEEEESSCCEEEEEEC
T ss_pred             cccCEEEEEEEEcCCCcEEEEEEEEEecC---ccccccCCcE-eccCC-ce----------EEEEEEeeecCCeEEEEEC
Confidence            99999999999999999999999988522   2221 11111 11111 11          1133333333333334332


Q ss_pred             CCccccccccccccceeeee-eeeccCcceeeeecCCCcceeee-eeccccc
Q psy10487        410 GKMKQSVSFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELI-EQSLAME  459 (610)
Q Consensus       410 ~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~  459 (610)
                      .................... +...|+|.|+|.|.|..|..... +.+.|..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~  228 (423)
T 3qs7_E          177 DSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ  228 (423)
T ss_dssp             -------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS
T ss_pred             CCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEec
Confidence            21110000000011111111 25679999999999999987653 5565554

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.66  E-value=2.6e-16  Score=159.56  Aligned_cols=206  Identities=16%  Similarity=0.131  Sum_probs=128.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeee---cceEeecCceEEEEEEE------EecCCCeEEEEeCCEEe
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE---SMVIREAGGNVTMSCYV------YGDPEPTILWLLNGQVL  301 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~---~~~~v~~G~~v~l~C~~------~g~P~p~v~W~~~g~~l  301 (610)
                      .+.+.|+|.+.+..+... ..+....+.-+|.+...+   ....+.+|+.+.|.|.+      .|.|.|.+.|++++..+
T Consensus        72 ~D~G~Y~C~a~n~~g~~~-~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l  150 (315)
T 1itb_B           72 EDSGHYYCVVRNSSYCLR-IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL  150 (315)
T ss_dssp             GGCSCCEECCCSSSCCCC-EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEEC
T ss_pred             hhCEEEEEEEeCCceEEE-EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEEC
Confidence            467899999987654322 222222233455554332   24567889999999998      89999999999999988


Q ss_pred             ccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee-cCCcce---eEEEEEEcCc--cccccccccCCcc-eee
Q psy10487        302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE-NIRGNA---SGEISLDLPE--INLATTLSKTDSW-YML  374 (610)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~---~~~~~L~V~~--~~~~p~~~~~~~~-~~~  374 (610)
                      ...... ..        ...+.|.|.+++.+|+|.|+|.|. |..|..   ...+.+.+..  ...+|.+...+.. ..+
T Consensus       151 ~~~~~~-~~--------~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~  221 (315)
T 1itb_B          151 LLDNIH-FS--------GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV  221 (315)
T ss_dssp             CCCSSS-EE--------EETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEEC
T ss_pred             CCccce-Ee--------ecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEE
Confidence            654321 11        223489999999999999999999 888876   3444443321  1234444443332 122


Q ss_pred             hhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCcccc---------cc--------ccccccceeeeeeeecc-
Q psy10487        375 VLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKMKQS---------VS--------FNDQEKKLLDVSITTTD-  434 (610)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~--------~~~~~~~L~i~~v~~~D-  434 (610)
                      ..+..+            .+.|...+.+  ...|.+.+..-..         ..        .......|.|.+++.+| 
T Consensus       222 ~~g~~v------------~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  289 (315)
T 1itb_B          222 DLGSQI------------QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFY  289 (315)
T ss_dssp             CSSSCE------------EEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGG
T ss_pred             eCCCcE------------EEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHc
Confidence            222221            2233333322  2233322110000         00        00123479999999999 


Q ss_pred             CcceeeeecCCCcceeeeeecccc
Q psy10487        435 RHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       435 ~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      +|.|+|.|.|..|..+..+.|.|.
T Consensus       290 ~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          290 KHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             TSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CCceEEEEecCCCceeEEEEEEec
Confidence            999999999999999998888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.66  E-value=5.1e-18  Score=172.58  Aligned_cols=177  Identities=17%  Similarity=0.164  Sum_probs=118.2

Q ss_pred             EEEcCCCCCCcc---------CcccCCCccEEEeecCCCCC--CChhhh----cccCCCCccEEEcccCCCcccchhhh-
Q psy10487         38 SALCKDANFTAL---------PSTLDSDIQVLDLNNNKISY--LTKEAF----KSIGLLNLQRIYLKNSGIREVHRDTF-  101 (610)
Q Consensus        38 ~~~C~~~~l~~l---------P~~l~~~L~~L~L~~n~i~~--l~~~~~----~~~~l~~L~~L~L~~n~l~~i~~~~f-  101 (610)
                      .+.|...+|+.+         |..++..++.|+|++|.|+.  ++...+    ...++.+|++|+|++|.+....+..+ 
T Consensus        37 ~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             EEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            466766666666         87666667777777777754  222221    11146778888888887775545444 


Q ss_pred             -cCCCCCcEEEccCCCCCCCCcccccCC-----CCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC--HHHh
Q psy10487        102 -KYLTILVEVDLSDNQIAWLHQDTFLGN-----DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH--KDAL  173 (610)
Q Consensus       102 -~~l~~L~~LdLs~n~l~~l~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~  173 (610)
                       ..+++|++|+|++|++..+ +..|..+     ++|++|+|++|.++.+.+..|.++++|+.|+|++|++....  +..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7777788888888877777 4556555     77888888888877777777777778888888877765431  1222


Q ss_pred             --hcCcccccccccccccccc---CcccccCCCcccEEecCCCcccc
Q psy10487        174 --IHLTALESLNLNGNRLKHL---SESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       174 --~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                        ..+++|+.|+|++|+++.+   ....+..+++|+.|++++|.+..
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence              6677777788887777733   23444566777777777777654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.66  E-value=6.2e-17  Score=176.47  Aligned_cols=201  Identities=10%  Similarity=-0.013  Sum_probs=117.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeee--cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE--SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+.    ....+.... ..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.|+|+|+|..+...... 
T Consensus       300 ~DsG~Y~C~a~N~----~~~~~~L~V-~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~-  373 (527)
T 3qs9_E          300 NDTGYYTCSSSKH----PSQSALVTI-VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-  373 (527)
T ss_dssp             GGCEEEEEEETTE----EEEEEEEEE-C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB-
T ss_pred             ccCeEEEEEEEeC----CCceEEEEE-EccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc-
Confidence            4678899999876    111222221 2345554433  3467788999999999999999999999999998655431 


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                       ..        ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.   .+|.+......        ..+.|.+.+
T Consensus       374 -~~--------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~---~~P~i~~~~~~--------~~l~C~a~g  433 (527)
T 3qs9_E          374 -LD--------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKPQVLAEASA--------SQASCFSDG  433 (527)
T ss_dssp             -CS--------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----CCCEEEECCCC--------E---EEEEC
T ss_pred             -cc--------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe---cCCeEEEeCCC--------CEEEEEEEE
Confidence             11        12379999999999999999999999999999999884   33444333221        112333333


Q ss_pred             heeEEEEEEeeecccccccc------cCCcc--ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        389 IGMSFCVCRAHEHKNKRRKR------KGKMK--QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .+...+.|.+......+...      +....  ...........|.+.+  .+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPG  510 (527)
T ss_dssp             SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred             EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence            33333333222111100000      00000  0000011222344444  4599999999999999999999987654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.66  E-value=1.3e-16  Score=159.67  Aligned_cols=170  Identities=21%  Similarity=0.235  Sum_probs=108.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ++.+...|....+.+|+.++|.|.+.|.| .+.+.|++ +|..+.............    ...+.|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEE
Confidence            46788889999999999999999999987 69999999 777766433221111111    1235899999999999999


Q ss_pred             EEEeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc--
Q psy10487        338 TCYAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM--  412 (610)
Q Consensus       338 ~C~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--  412 (610)
                      +|.|.|..|. .+..+.|.|..   +|.+...+....+..+..+            .+.|.....  +...|.+.+..  
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v------------~l~C~~~~~p~~~v~W~~~~~~~~  142 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIFQ---KLMFKNAPTPQEFKEGEDA------------VIVCDVVSSLPPTIIWKHKGRDVI  142 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEC---CSEEEECCSSEEEETTSCE------------EECCEEECSSCCEEEEEETTSCSS
T ss_pred             EEEEEcCCCCeeEEEEEEEeec---cccccCCCCcccccCCCeE------------EEEEEeccCCCCEEEEEECCEEcc
Confidence            9999999864 45677777732   3333333333333222221            122222222  22222221111  


Q ss_pred             --cccccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        413 --KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       413 --~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                        .........++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (291)
T 1qz1_A          143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (291)
T ss_dssp             TTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCC
Confidence              001111234568999999999999999999997644

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.66  E-value=5.5e-17  Score=169.88  Aligned_cols=212  Identities=17%  Similarity=0.132  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.|..+........... ...+.+.. ....+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..
T Consensus        73 ~D~G~Y~C~A~N~~G~~~s~~~~l~v-~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~  151 (384)
T 3kld_A           73 QDAGTYQCIATNSFGTIVSREAKLQF-AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF  151 (384)
T ss_dssp             HHCEEEEEEEEETTEEEECCCEEEEE-EEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEE
T ss_pred             ccCEEEEEEEEcCcccEEecceEEEE-ecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEE
Confidence            36789999998766532222221111 11222222 23457788999999999764 67889999999998775443322


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE---EEEEEcCc----ccccccc-ccCCcceeehhhhHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG---EISLDLPE----INLATTL-SKTDSWYMLVLGISV  380 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~---~~~L~V~~----~~~~p~~-~~~~~~~~~~~~~~~  380 (610)
                      ...        ..+.|.|.+++.+|+|.|+|.|.|..|....   ...+.+..    ....|.+ ...+....+..+..+
T Consensus       152 ~~~--------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v  223 (384)
T 3kld_A          152 VSQ--------ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV  223 (384)
T ss_dssp             ECT--------TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCE
T ss_pred             EEc--------CCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcE
Confidence            211        1247999999999999999999999886532   12222210    0011111 111222222222211


Q ss_pred             HHHHHHHhheeEEEEEEeeecccccccccCC--ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGK--MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .          +.|.....+.+...|.+...  ..........++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       224 ~----------l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  293 (384)
T 3kld_A          224 K----------LECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY  293 (384)
T ss_dssp             E----------EEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             E----------EEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe
Confidence            1          12332333333334433211  11111222345689999999999999999999999999999998887


Q ss_pred             cCC
Q psy10487        459 EQP  461 (610)
Q Consensus       459 ~~p  461 (610)
                      ..|
T Consensus       294 ~~P  296 (384)
T 3kld_A          294 AQP  296 (384)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            643

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=151.53  Aligned_cols=171  Identities=16%  Similarity=0.152  Sum_probs=114.9

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      ..+.|...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+....               .+.|.|.+++.+|+|.|+
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~   81 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------------TSELIFNAVHVKDAGFYV   81 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------------SSEEEETTCCGGGCEEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------------CCEEEEccCChhhCeEeE
Confidence            45888889999999999999999999999999999999998875432               138999999999999999


Q ss_pred             EEeecCCcce-eEEEEEEcCcccc------------ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccc
Q psy10487        339 CYAENIRGNA-SGEISLDLPEINL------------ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR  405 (610)
Q Consensus       339 C~a~N~~G~~-~~~~~L~V~~~~~------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (610)
                      |.|.|..|.. +..+.|.|.....            .|.+...+....+..+..            +.+.|.....+...
T Consensus        82 C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~------------v~L~C~~~g~p~~~  149 (218)
T 3k0w_A           82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST------------LVLQCVAVGSPIPH  149 (218)
T ss_dssp             EEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCC------------EEEECEEEBSSCCE
T ss_pred             EEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCc------------EEEEEEecccCCCe
Confidence            9999998865 5567777643211            123333333222222221            13344433333221


Q ss_pred             ccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccc
Q psy10487        406 RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAM  458 (610)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~  458 (610)
                       ..|.+.+..+. ......|.|.+++.+|+|.|+|.|.|..|... ....+.|.
T Consensus       150 -v~W~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          150 -YQWFKNELPLT-HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             -EEEEETTEECT-TCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             -EEEEECCEECC-CCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence             23333222221 23345799999999999999999999988743 33444443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.66  E-value=7.9e-17  Score=168.14  Aligned_cols=203  Identities=17%  Similarity=0.169  Sum_probs=129.5

Q ss_pred             CCCCCCCCCCCCccCCCc----ccccccc-----cccCCCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEE
Q psy10487        231 LYSHPLSCTEPGMLQTKH----WDDVKAQ-----EFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV  300 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~----~~~v~~~-----~~~c~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~  300 (610)
                      .+.+.|+|.+.+..+...    ...+...     ....+|.+... +....+.+|+.++|.|.+.|.|.|.+.|++++..
T Consensus       168 ~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~  247 (382)
T 1cs6_A          168 SDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS  247 (382)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSC
T ss_pred             ccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcc
Confidence            467889998876552110    0001110     11224555543 4577889999999999999999999999998876


Q ss_pred             eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHH
Q psy10487        301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISV  380 (610)
Q Consensus       301 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~  380 (610)
                      +....    .        ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..   +|.+...+....+..+..+
T Consensus       248 ~~~~~----~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~~  312 (382)
T 1cs6_A          248 QTSKW----L--------SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---QPDWLDVITDTEADIGSDL  312 (382)
T ss_dssp             CSCCC----S--------BSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEEEETTCCE
T ss_pred             cccEE----e--------cCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec---CCCcccCCCccEEcCCCeE
Confidence            54311    0        1224899999999999999999999999998888888843   3333333332222222221


Q ss_pred             HHHHHHHhheeEEEEEEeeecccccccccCCcc-ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .          +.|.....+.+...|.+.+..- ..-.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       313 ~----------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          313 R----------WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             E----------EECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             E----------EEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            1          1222222222333333322110 001112235689999999999999999999999999998888764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.66  E-value=2.9e-16  Score=130.78  Aligned_cols=94  Identities=23%  Similarity=0.471  Sum_probs=79.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ||.|...+.++.+.+|+.++|.|.+.|.|.|.|.|+|||..+......+......+    ....|.|.+++.+|+|.|+|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD----DLTTLIIMDVQKQDGGLYTL   80 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS----SEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc----ceEEEEEcCCCccCCEEEEE
Confidence            67787788899999999999999999999999999999999876554333222221    23589999999999999999


Q ss_pred             EeecCCcceeEEEEEEcC
Q psy10487        340 YAENIRGNASGEISLDLP  357 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~  357 (610)
                      .|.|.+|.++.++.|.|.
T Consensus        81 ~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           81 SLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEEE
Confidence            999999999999999884

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.66  E-value=9.2e-16  Score=150.83  Aligned_cols=167  Identities=18%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...+....+.+|+.++|.|.+.|.|.+ .+.|+++|..+....                +.|.|.+++.+|+|.|+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------------~~l~i~~~~~~d~G~Y~   64 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------------PSYRITSASVNDSGEYR   64 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------------SEEEESSCCGGGCEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------------CeEEEecCCcccCeEEE
Confidence            4778888888899999999999999999988 999999998876432                37999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF  418 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (610)
                      |.|.|..+....  .|.|...   +............+. .            +.+.|............|.+.+..+..
T Consensus        65 C~~~~~~~s~~~--~l~v~~~---~~~~~~~~~~~~~g~-~------------v~l~C~~~~~~p~~~v~W~~~g~~~~~  126 (262)
T 3rjd_A           65 CQRGLSGRSDPI--QLEIHRG---WLLLQVSSRVFTEGE-P------------LALRCHAWKDKLVYNVLYYRNGKAFKF  126 (262)
T ss_dssp             EEESSSCCCCCE--EEEEECS---SEEEEESCSEEETTS-C------------EEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             EEEecCCccccE--EEEEecc---ceEecCCCeEEecCC-e------------EEEEEEccCCCCCceEEEEECCccccc
Confidence            999998776544  4444221   111111111111111 1            133444321111111233333343444


Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      ......|.|.+++.+|+|.|+|.|.|..|..+....+.|.+.
T Consensus       127 ~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A          127 FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             EEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred             cCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence            445678999999999999999999999988888778777653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.65  E-value=1.4e-16  Score=159.63  Aligned_cols=204  Identities=13%  Similarity=0.136  Sum_probs=128.1

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCC-CeEEEE-eCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWL-LNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~-~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+   +. ...+... +..+|.+...+....+.+|+.+.|.|.+.| |. |.+.|+ ++|..+....+  
T Consensus        67 ~d~G~Y~C~~~n---g~-~~~~~l~-V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~--  138 (290)
T 2o26_X           67 TRTGTYTCSNSN---GL-TSSIYVF-VRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT--  138 (290)
T ss_dssp             GGCEEEEEEESS---SC-EEEEEEE-EECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE--
T ss_pred             HhCeEEEEEeeC---Cc-cEEEEEE-EeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc--
Confidence            467889999887   22 1122221 123454445667788889999999999996 88 999995 67877654321  


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCe-EEEEEeecCCcce-eEEEEEEcCc-cccccccccCCcceeehhhhHHHHHHH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAENIRGNA-SGEISLDLPE-INLATTLSKTDSWYMLVLGISVCVVSV  385 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~-~~~~~L~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~  385 (610)
                      ...       ...+.|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|.. ...+|.+...+....+..+..      
T Consensus       139 ~~~-------~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~------  205 (290)
T 2o26_X          139 FVP-------NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDT------  205 (290)
T ss_dssp             EEE-------ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCC------
T ss_pred             eee-------CCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCc------
Confidence            111       11237999999999999 9999999997664 3467777742 223445544433333322222      


Q ss_pred             HHhheeEEEEEEeeeccc---ccccccCCcc-------cc--cc---ccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        386 IVSIGMSFCVCRAHEHKN---KRRKRKGKMK-------QS--VS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~--~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                            +.+.|...+.+.   ..|.+.+...       ..  ..   .......|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       206 ------v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~  279 (290)
T 2o26_X          206 ------FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN  279 (290)
T ss_dssp             ------EEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred             ------EEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEE
Confidence                  133344333332   2333322210       00  00   123456899999999999999999999999999


Q ss_pred             eeeecccccCC
Q psy10487        451 LIEQSLAMEQP  461 (610)
Q Consensus       451 ~~~~l~v~~~p  461 (610)
                      ..+.|.|.++|
T Consensus       280 ~~~~l~V~~~P  290 (290)
T 2o26_X          280 VTTTLKVVEKG  290 (290)
T ss_dssp             EEEEECC----
T ss_pred             EEEEEEEEeCC
Confidence            99999887653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.65  E-value=5.1e-17  Score=154.00  Aligned_cols=191  Identities=17%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc--ceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ++.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+......  ..............+.|.|.+++.+|+|.|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y   83 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence            456666778889999999999999999999999999977553211000  000000111112236899999999999999


Q ss_pred             EEEeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeeccccccccc--CCc
Q psy10487        338 TCYAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEHKNKRRKRK--GKM  412 (610)
Q Consensus       338 ~C~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~  412 (610)
                      +|.|.|..|.  .+..+.|.|...+..+..   .....+..+..+.+.|.+ .+.+...+.|.+.+.........  ...
T Consensus        84 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  160 (209)
T 1nbq_A           84 TCMVSEEGGNSYGEVKVKLIVLVPPSKPTV---NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS  160 (209)
T ss_dssp             EEEEEETTSSCEECCEEECCEEBCCCCCCC---CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCT
T ss_pred             EEEEecCCCCccceEEEEEEEecCCcCCCc---ccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeee
Confidence            9999999763  345566666333222222   111112222222222222 22222233333322211100000  000


Q ss_pred             cccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487        413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE  453 (610)
Q Consensus       413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~  453 (610)
                      ............|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus       161 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          161 NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             TCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             ccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence            01112223567899999999999999999999999874433

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.65  E-value=3e-17  Score=169.21  Aligned_cols=208  Identities=12%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc---CCCceeeeecceEeecCceEEEEEEE-----EecCCCeEEEEeCCEEec
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTIKESMVIREAGGNVTMSCYV-----YGDPEPTILWLLNGQVLH  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~~~~~~~v~~G~~v~l~C~~-----~g~P~p~v~W~~~g~~l~  302 (610)
                      .+.+.|+|.+.+..+... ..+......   +.+.....+....+.+|+.+.|.|.+     .|.|.|.+.|++++..+.
T Consensus        89 ~D~G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~  167 (349)
T 4dep_C           89 NDTGNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ  167 (349)
T ss_dssp             GGCEEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred             hhCEEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence            467889998876543221 111121111   11112223456678899999999985     789999999999999885


Q ss_pred             cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC-cce---eEEEEEEcCcccc---ccccccCCcce--e
Q psy10487        303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR-GNA---SGEISLDLPEINL---ATTLSKTDSWY--M  373 (610)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~---~~~~~L~V~~~~~---~p~~~~~~~~~--~  373 (610)
                      ....  ..        .....|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|.....   +|.+.......  .
T Consensus       168 ~~~~--~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~  237 (349)
T 4dep_C          168 NFNN--VI--------PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE  237 (349)
T ss_dssp             SCSS--EE--------EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC---------
T ss_pred             Cccc--ee--------ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEE
Confidence            4321  11        122379999999999999999999987 554   5667777643221   33333322211  1


Q ss_pred             ehhhhHHHHHHHHHhheeEEEEEEe----eecccccccccCCccc----cccc-----------cccccceeeeeeeecc
Q psy10487        374 LVLGISVCVVSVIVSIGMSFCVCRA----HEHKNKRRKRKGKMKQ----SVSF-----------NDQEKKLLDVSITTTD  434 (610)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~-----------~~~~~~L~i~~v~~~D  434 (610)
                      +..+..+.+          .|....    .+.+...|.+.+..-.    ....           ......|.|.+++.+|
T Consensus       238 v~~G~~v~l----------~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  307 (349)
T 4dep_C          238 KEPGEELLI----------PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSED  307 (349)
T ss_dssp             -------CC----------CEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC---------
T ss_pred             EecCCcEEE----------EEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHH
Confidence            222221221          222211    1112222322211100    0000           1123459999999999


Q ss_pred             C-cceeeeecCCCcceeeeeeccccc
Q psy10487        435 R-HTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       435 ~-G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      + |.|+|.|.|..|..+..+.|.|..
T Consensus       308 ~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          308 LKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ----CEEEEECSSCEEEEECC-----
T ss_pred             cCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            9 999999999999999999988865

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.65  E-value=1.8e-16  Score=160.17  Aligned_cols=210  Identities=11%  Similarity=0.056  Sum_probs=125.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccc---c------CCCceeeee-cceEeecCceEEEEEEEE-ecCCCeEEEEeCCE
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---A------CPPNVTIKE-SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQ  299 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~------c~P~i~~~~-~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~  299 (610)
                      .+.+.|+|.+.+..+......+.....   .      .+|.+...+ ....+.+|+.+.|.|.+. |.|.|.+.|++++.
T Consensus        68 ~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~  147 (312)
T 2y23_A           68 DDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK  147 (312)
T ss_dssp             GGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTE
T ss_pred             cCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCE
Confidence            367889999887665332222221110   0      155555544 378889999999999999 89999999999999


Q ss_pred             EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc---------c-------cccc
Q psy10487        300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE---------I-------NLAT  363 (610)
Q Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~---------~-------~~~p  363 (610)
                      .+....+.........    ....|.|.+++.+|+|.|+|.|.|..+.....+.+....         .       ..+|
T Consensus       148 ~i~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (312)
T 2y23_A          148 EIFEGPKYKMHIDRNT----GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP  223 (312)
T ss_dssp             EECSSSSCEEEEETTT----TEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ECeeCCcEEEEEccCC----CEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCC
Confidence            9877654332222111    123699999999999999999987655544444432100         0       0112


Q ss_pred             ccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCc---cccccccccccceeeeeeeeccCcc
Q psy10487        364 TLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHT  437 (610)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~  437 (610)
                      .+..... ..+..+..            +.+.|.....+   ...|.+.+..   ............|.|.+++.+|+|.
T Consensus       224 ~~~~~~~-~~v~~G~~------------~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~  290 (312)
T 2y23_A          224 HFVEYLS-WEVTGECN------------VLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI  290 (312)
T ss_dssp             EEEEEEE-EEEETTTE------------EEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEE
T ss_pred             ceeecce-EEEeCCCE------------EEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEE
Confidence            1111111 11111111            13344444332   2233322111   1111222334689999999999999


Q ss_pred             eeeeecCCCcceeeeeeccc
Q psy10487        438 GSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       438 Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      |+|.|.|..|..+..+.|.+
T Consensus       291 Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          291 YEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEEEEESTTCCEEEEEEECS
T ss_pred             EEEEEEcCCCceeeeeEEEe
Confidence            99999999999999888865

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.65  E-value=2.7e-16  Score=144.25  Aligned_cols=154  Identities=14%  Similarity=0.157  Sum_probs=102.0

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.+...+....+.+|+.++|.|.+.+.| .+.+.|+++|..+.....                .+.|.+++.+|+|.|+|
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------------PSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------------SEEEEECCGGGCEEEEE
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------------ceEEEecccccCeEEEE
Confidence            5666777778899999999999999987 679999999998765432                57788999999999999


Q ss_pred             EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487        340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN  419 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (610)
                      .|.|..+..  .+.|.|...   +.....+......+ ..            +.+.|............|.+.+..+...
T Consensus        69 ~~~~~~~s~--~~~l~v~~~---~~~~~~~~~~~~~g-~~------------~~l~C~~~~~~p~~~~~W~~~g~~~~~~  130 (170)
T 3ry4_A           69 QTGQTSLSD--PVHLTVLFE---WLVLQTPHLEFQEG-ET------------IMLRCHSWKDKPLVKVTFFQNGKSQKFS  130 (170)
T ss_dssp             EETTSBCCC--CEEEEEECC---SEEEECSCSEECTT-CC------------EEEEEEEGGGCCEEEEEEEETTEEEEEE
T ss_pred             EEeCCCceE--eEEEEEECC---ceEecCCCceeecC-Ce------------EEEEEECCCCCCCceEEEEECCeEcccc
Confidence            999865544  455555321   12222222111111 11            1334443222111112333333333334


Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus       131 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          131 HLDPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             SSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            45668999999999999999999999986

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.65  E-value=2.4e-17  Score=189.80  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=138.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+..+.... .+.. .+..+|.+...+....+.+|++++|.|.+.|.|.|.+.|+++|..+....     
T Consensus       316 ~D~G~Y~C~a~n~~g~~~~-~~~l-~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~-----  388 (816)
T 3dmk_A          316 EDSGKYLCVVNNSVGGESV-ETVL-TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-----  388 (816)
T ss_dssp             GGCEEEEEEEECSSCEEEE-EEEE-EECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-----
T ss_pred             hHCEEEEEEEEcCCCceEE-EEEE-EEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC-----
Confidence            3567899998776654321 1111 12245666677778889999999999999999999999999998875432     


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG  390 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (610)
                                 +.|.|.+++.+|+|.|+|.|.|..|....++.+.|.....+|.+...+....+..+...          
T Consensus       389 -----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v----------  447 (816)
T 3dmk_A          389 -----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSV----------  447 (816)
T ss_dssp             -----------SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCE----------
T ss_pred             -----------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCE----------
Confidence                       37999999999999999999999999888888888655555555544433333222221          


Q ss_pred             eEEEEEEeeec--ccccccccCCcc---ccccc-------cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        391 MSFCVCRAHEH--KNKRRKRKGKMK---QSVSF-------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       391 ~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                        .+.|...+.  +...|.+.+..-   .....       .+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       448 --~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  525 (816)
T 3dmk_A          448 --FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY  525 (816)
T ss_dssp             --EEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             --EEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe
Confidence              223333322  223333221110   00000       0112359999999999999999999999999999999887


Q ss_pred             cCC
Q psy10487        459 EQP  461 (610)
Q Consensus       459 ~~p  461 (610)
                      ..|
T Consensus       526 ~~p  528 (816)
T 3dmk_A          526 GLP  528 (816)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.65  E-value=4.3e-16  Score=131.46  Aligned_cols=95  Identities=26%  Similarity=0.421  Sum_probs=81.4

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..||.|...+.++.+.+|++++|.|.+.|.|.|.|.|+|||..+....+.....+..      ...|.|.+++.+|+|.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y   84 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA------EHGLLLTAALPTDAGVY   84 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETT------EEEEEESSCCGGGCEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCc------eEEEEEecCChhhCEEE
Confidence            357889888999999999999999999999999999999999998765433332222      24899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCc
Q psy10487        338 TCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      +|+|.|.+|.++.++.|.|.+
T Consensus        85 ~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           85 VCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEEc
Confidence            999999999999999998843

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.65  E-value=2.9e-16  Score=175.77  Aligned_cols=232  Identities=15%  Similarity=0.161  Sum_probs=140.1

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+..+......+......-++.+...+....+.+|+.++|.|.+.|+|.|.+.|+++|..+...      
T Consensus       174 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~------  247 (642)
T 1e07_A          174 NDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST------  247 (642)
T ss_pred             ccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC------
Confidence            46688999998766543323333333333444455667778899999999999999999999999999877432      


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE--EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG--EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                                 +.|.|.+++.+|+|.|+|.|.|..|....  .+.|.|......|.+..... ..+..+..+.+.|.+.+
T Consensus       248 -----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~-~~~~~g~~v~l~C~~~~  315 (642)
T 1e07_A          248 -----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS-NPVEDEDAVALTCEPEI  315 (642)
T ss_pred             -----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCc-eeEecCCcEEEEEECCC
Confidence                       27999999999999999999999987644  45666644333333332221 11221111111111111


Q ss_pred             heeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccccCCCcceeE
Q psy10487        389 IGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAMEQPPVHITI  467 (610)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~~~pp~~i~i  467 (610)
                      .+ ..+.|++.+..-       .....+.....++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|...|+. ..+
T Consensus       316 ~p-~~v~W~~~g~~l-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~-~~~  386 (642)
T 1e07_A          316 QN-TTYLWWVNNQSL-------PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD-PTI  386 (642)
T ss_pred             CC-ccEEEEECCccC-------CCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCC-Cee
Confidence            11 112222211110       0111122223457899999999999999999999999754 3466666654432 111


Q ss_pred             e-----cCCCC----Cc-ccccCCCc-ccccCC
Q psy10487        468 E-----SHAVD----PQ-VSVFPPPP-EFSSNH  489 (610)
Q Consensus       468 e-----~~~~~----~l-~~~~P~pp-ef~~~~  489 (610)
                      .     ...++    .| +.++|+|. .|..+-
T Consensus       387 ~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g  419 (642)
T 1e07_A          387 SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDG  419 (642)
T ss_pred             cCCceEecCCCcEEEEEEcCccCCCeEEEEECC
Confidence            1     11122    22 66788776 776553

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=156.74  Aligned_cols=188  Identities=13%  Similarity=0.091  Sum_probs=127.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+.....   .+.....  .+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....    
T Consensus        58 ~d~G~Y~C~~~~~~~s~---~~~l~v~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~----  128 (262)
T 3rjd_A           58 NDSGEYRCQRGLSGRSD---PIQLEIH--RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH----  128 (262)
T ss_dssp             GGCEEEEEEESSSCCCC---CEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----
T ss_pred             ccCeEEEEEEecCCccc---cEEEEEe--ccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC----
Confidence            46778999886543322   1222111  2335556667778899999999999 788999999999998875321    


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI  389 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (610)
                                ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+...+|.+...+......+. .          
T Consensus       129 ----------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~-~----------  187 (262)
T 3rjd_A          129 ----------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN-L----------  187 (262)
T ss_dssp             ----------ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTC-C----------
T ss_pred             ----------CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCC-e----------
Confidence                      2348999999999999999999999998888888888655445555444422222221 1          


Q ss_pred             eeEEEEEEeeeccc---ccc-cccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        390 GMSFCVCRAHEHKN---KRR-KRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       390 ~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                        +.+.|.....+.   ..| ..|.+.+..+........|.|.+++.+|+|.|+|.|.|..|...
T Consensus       188 --~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          188 --VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             --EEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred             --EEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence              233454443322   111 23333333333334556899999999999999999999999753

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=148.79  Aligned_cols=167  Identities=17%  Similarity=0.151  Sum_probs=101.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+. ..+.+|++++|.|.+.|.|. .+.|+|++..+.........       ....+.|.|.+++.+|+|.|+|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLE-------PKNKARFSIPSMTEHHAGRYRC   75 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCS-------STTEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccC-------CccccEEEeccCChhHCeEEEE
Confidence            577777776 47889999999999998876 99999999866432110000       0124589999999999999999


Q ss_pred             EeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccCCcccc-
Q psy10487        340 YAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKGKMKQS-  415 (610)
Q Consensus       340 ~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  415 (610)
                      .|.|..|..  +..+.|.|.....+|.+...+.. .+..+..            +.+.|.....+ ...|.+.+..... 
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~------------v~L~C~~~~~p~~~~W~k~g~~~~~~  142 (196)
T 2d3v_A           76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP-VVTSGEN------------VTLQCGSRLRFDRFILTEEGDHKLSW  142 (196)
T ss_dssp             EEEETTEECBCCCCEEEEEECSSCCCEEEC------------------------CEEEEEESSCCSEEEEEEC---CCEE
T ss_pred             EEeCCCCcCCcCccEEEEecCCCCCCeEEccCCc-cccCCCc------------EEEEEEcCCCCCEEEEEccCCccccc
Confidence            999998753  45677777543334444333221 1111111            12334333332 1122222111100 


Q ss_pred             -----c-cccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        416 -----V-SFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       416 -----~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                           . ......+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       143 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          143 TLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             ccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence                 0 00123468999999999999999999997664

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.64  E-value=2.3e-16  Score=146.13  Aligned_cols=166  Identities=13%  Similarity=0.102  Sum_probs=105.3

Q ss_pred             cceEeecCceEEEEEEEEe--cCCCeEEEEeCCEEeccCCccc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        268 SMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      ..+.+.+|++++|.|...+  .|.|.|.|+|++..+....... .....++..+...+.|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence            3467789999999995433  6778999999997664221110 111112212223457999999999999999999999


Q ss_pred             Ccce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccc
Q psy10487        345 RGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQE  422 (610)
Q Consensus       345 ~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (610)
                      .|..  +..+.|.|.+....|.+......                    +.+.|...+.+.+ ...|.+.+..+.   ..
T Consensus        84 ~g~~~~~~~~~l~V~~~~~~p~i~~~~~~--------------------v~L~C~~~g~p~p-~i~W~~~g~~l~---~~  139 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVSKPMIYWECSN--------------------ATLTCEVLEGTDV-ELKLYQGKEHLR---SL  139 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCCCCEEEEETTT--------------------TEEEEECSSCSSC-EEEEEETTEEEE---EE
T ss_pred             CCCEEEEEEEEEEEeCCCCCCEEEecCCc--------------------EEEEEEecCCCCc-EEEEEECCEECC---CC
Confidence            9986  67788888543333333211110                    1334443333321 123333332221   12


Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..+.+.+++.+|+|.|+|.|.|..|..+..+.+.+
T Consensus       140 ~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          140 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SSSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CcEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            23667788899999999999999999888777654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.64  E-value=2.2e-17  Score=169.56  Aligned_cols=219  Identities=12%  Similarity=0.111  Sum_probs=130.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCcee--eeecceEeecCceEEEEEE-----EEecCCCeEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVT--IKESMVIREAGGNVTMSCY-----VYGDPEPTILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~--~~~~~~~v~~G~~v~l~C~-----~~g~P~p~v~W~~~g~~l~~  303 (610)
                      .+.+.|+|.+.+..+. ....+..... .+|...  .......+.+|+.+.|.|.     +.|.|.|.+.|+++|..+..
T Consensus        91 ~D~G~Y~C~~~n~~g~-~~~~~~l~V~-~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~  168 (339)
T 3o4o_C           91 EDSGTYVCTTRNASYC-DKMSIELRVF-ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK  168 (339)
T ss_dssp             TCCEEEECCEEETTEE-EEEEEEEEEE-CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT
T ss_pred             ccCEEEEEEEECCcce-EEEEEEEEEE-cCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC
Confidence            4678899998765431 1122222211 122111  1123347789999999999     89999999999999988865


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcCccc--cccccccCCcceeehhh
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG----NASGEISLDLPEIN--LATTLSKTDSWYMLVLG  377 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~~~~--~~p~~~~~~~~~~~~~~  377 (610)
                      ..........       .+.|.|.+++.+|+|.|+|.|.|..|    .....+.|.|....  .+|.+...+....+..+
T Consensus       169 ~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G  241 (339)
T 3o4o_C          169 DNEKFLSVRG-------TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG  241 (339)
T ss_dssp             TCSSEEECTT-------SSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCC
T ss_pred             CCceeEEcCC-------cceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccC
Confidence            5332222111       13899999999999999999999988    45667778775332  23444444444333333


Q ss_pred             hHHHHHHHH---HhheeEEEEEEeeeccccccc-c--cCCccccccccccc-----cceeeeeeeeccC-cceeeeecCC
Q psy10487        378 ISVCVVSVI---VSIGMSFCVCRAHEHKNKRRK-R--KGKMKQSVSFNDQE-----KKLLDVSITTTDR-HTGSCEALGS  445 (610)
Q Consensus       378 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-----~~L~i~~v~~~D~-G~Y~C~A~N~  445 (610)
                      ..+.+.|.+   .+.+....++|.+........ .  .............+     ..|.|.+++.+|+ |.|+|.|.|.
T Consensus       242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~  321 (339)
T 3o4o_C          242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT  321 (339)
T ss_dssp             SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred             CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence            334444444   333312233343322211100 0  00011111111111     1799999999998 9999999999


Q ss_pred             Ccceeeeeecccc
Q psy10487        446 QPDMELIEQSLAM  458 (610)
Q Consensus       446 ~G~~~~~~~l~v~  458 (610)
                      .|+++..+.+.+.
T Consensus       322 ~G~~~~~~~~~~~  334 (339)
T 3o4o_C          322 LSFQTLRTTVKEH  334 (339)
T ss_dssp             TEEECCBCCCCC-
T ss_pred             cCceEEEEEhhHh
Confidence            9999888777554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=9.1e-16  Score=169.23  Aligned_cols=167  Identities=25%  Similarity=0.370  Sum_probs=145.3

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.+++.++.+..+|. ....+|+.|+|++|.|+.+++  |.  .+++|+.|+|++|.|..++  .|..+++|++|+|++
T Consensus        45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred             CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence            3567888888888873 224689999999999999886  55  6899999999999999875  589999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |+|..++  .|..+++|+.|+|++|.++.+  ..|..+++|+.|+|++|+|..+.+  +..+++|+.|+|++|.|..++ 
T Consensus       119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-  191 (605)
T 1m9s_A          119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-  191 (605)
T ss_dssp             SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-
T ss_pred             CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-
Confidence            9999874  488999999999999999988  458899999999999999998866  889999999999999999884 


Q ss_pred             ccccCCCcccEEecCCCccccc
Q psy10487        195 SVFFPTPNLKTLSLDGNPWCCD  216 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~~c~  216 (610)
                       .+..+++|+.|+|++|++...
T Consensus       192 -~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          192 -ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GGTTCTTCSEEECCSEEEECC
T ss_pred             -HHccCCCCCEEEccCCcCcCC
Confidence             478899999999999987654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.64  E-value=3.8e-16  Score=145.62  Aligned_cols=159  Identities=14%  Similarity=0.048  Sum_probs=102.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      -+|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|+|....                ...+.|.|.+++.+|+|.|+
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~----------------~~~~~L~i~~v~~~D~G~Y~   68 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY----------------QDQAVLFIPAMKRSLAGRYR   68 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE----------------ESSSEEEESSCCGGGCEEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc----------------CcccEEEECcCChhhCceEE
Confidence            35777777764 7899999999999988 889999999986510                12248999999999999999


Q ss_pred             EEeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-ccccccCCccc-
Q psy10487        339 CYAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-KRRKRKGKMKQ-  414 (610)
Q Consensus       339 C~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  414 (610)
                      |.|.|..|.  .+..+.|.|.+...+|.+...+...... +..+            .+.|.....+. ..|.+.+.... 
T Consensus        69 C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~-G~~v------------~l~C~~~~~~~~~~w~k~g~~~~~  135 (184)
T 2gi7_A           69 CSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS-GGDV------------TLQCQTRYGFDQFALYKEGDPAPY  135 (184)
T ss_dssp             EEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCC-TTCE------------EEEEECSSCCCEEEEEECCCCTTS
T ss_pred             EEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecC-CCcE------------EEEEEcCCCCcEEEEEECCCcCcc
Confidence            999999874  3456777775444444444333221111 1111            22333221111 11111111000 


Q ss_pred             cccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        415 SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       415 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .......++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       136 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          136 KNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             CCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred             eecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence            1112245668999999999999999999997653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.64  E-value=5.3e-16  Score=177.22  Aligned_cols=163  Identities=17%  Similarity=0.097  Sum_probs=105.4

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      +|++|+|++|.++...+..|.  ++++|++|+|++|.+....+..|..+++|++|+|++|++....+..|..+++|+.|+
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            455555555555544444444  466666666666666666666666666666666666666665566666666777777


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      |++|.+++..+..|.++++|+.|+|++|++....+..|..+++|+.|+|++|++.+..+..+..+++|+.|++++|++.+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            77776666555566666777777777777765556666666777777777777665555566666677777777777666


Q ss_pred             cCCch
Q psy10487        216 DCHLR  220 (610)
Q Consensus       216 ~c~l~  220 (610)
                      .+...
T Consensus       553 ~ip~~  557 (768)
T 3rgz_A          553 TIPAA  557 (768)
T ss_dssp             BCCGG
T ss_pred             cCChH
Confidence            65543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=6.6e-16  Score=148.54  Aligned_cols=129  Identities=31%  Similarity=0.381  Sum_probs=80.5

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      +.++++++.++.++....     .+|+.|+|++|.|..+.+.+|..+++|++|+|++|+|..+.+..|.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            356777777777764332     356666666666666666666666666666666666666655556655556555555


Q ss_pred             CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      +|.++.++...|..++                        +|+.|+|++|+|+.+.+..|..+++|+.|++++|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           89 GNKITELPKSLFEGLF------------------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             SSCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCCccCHhHccCCC------------------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            5555555544444444                        45555555555555555566677788888888888753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.8e-16  Score=145.67  Aligned_cols=142  Identities=22%  Similarity=0.276  Sum_probs=121.1

Q ss_pred             ccCcccCCCccEEEeecCCCC--CCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccc
Q psy10487         48 ALPSTLDSDIQVLDLNNNKIS--YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF  125 (610)
Q Consensus        48 ~lP~~l~~~L~~L~L~~n~i~--~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f  125 (610)
                      .++...+.+++.|+|++|.|+  .++.. +.  .+++|+.|+|++|.|..+  ..|..+++|++|+|++|++....+..+
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            344455678999999999998  66543 54  688999999999999988  678999999999999999998667778


Q ss_pred             cCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCH---HHhhcCccccccccccccccccCc
Q psy10487        126 LGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       126 ~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      ..+++|++|+|++|.++.+.. ..|..+++|+.|+|++|.+..+.+   ..+..+++|+.|++++|.+..++.
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            889999999999999998754 578889999999999999998876   578889999999999998877764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.63  E-value=4.4e-16  Score=159.01  Aligned_cols=210  Identities=11%  Similarity=0.090  Sum_probs=129.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceee--eecceEeecC---ceEEEEEE-EEecCCCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI--KESMVIREAG---GNVTMSCY-VYGDPEPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~--~~~~~~v~~G---~~v~l~C~-~~g~P~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|.|.+.....+.....+.... ..+|.+..  .+....+.+|   +.++|.|. +.|.|.|.+.|++++......
T Consensus       102 ~D~G~Y~C~~~~~~~~~~~~~~~l~V-~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  180 (331)
T 3u83_A          102 EDEGVYICEFATFPTGNRESQLNLTV-MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY  180 (331)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEE-EBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             ccCcEEEEEEEecCCCccEEEEEEEE-ecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc
Confidence            46788999743332232222222222 23555533  3466777888   77999998 889999999999953221111


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccc-cCCcceeehhhhHHHHH
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLS-KTDSWYMLVLGISVCVV  383 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~-~~~~~~~~~~~~~~~~~  383 (610)
                      .    .....++.....+.|.|..++.+|+|.|+|.|.|..|..+.++.|.|...   |.+. .......+..+..    
T Consensus       181 ~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~---P~~~~~~~~~~~~~~g~~----  249 (331)
T 3u83_A          181 Q----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE---PEVTIEGFDGNWYLQRMD----  249 (331)
T ss_dssp             E----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE---EEEEEECCCSCCBTTCCC----
T ss_pred             c----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC---CeEEEecCCCceEeCCCe----
Confidence            0    11111223344568999999999999999999999999888888887432   2222 1111111111111    


Q ss_pred             HHHHhheeEEEEEEeeecccccccccCCcccccc--ccccccceeee-eeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        384 SVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS--FNDQEKKLLDV-SITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~-~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                              +.+.|.....+......|.+.+..+.  ....++.|.|. +++.+|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus       250 --------~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          250 --------VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             --------EEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred             --------EEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence                    23344444443332123333222221  22345689999 89999999999999999999999999988764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.63  E-value=5.9e-16  Score=168.85  Aligned_cols=207  Identities=13%  Similarity=0.108  Sum_probs=121.6

Q ss_pred             CCCCCCCCCCCCccCCCccccccc---ccccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKA---QEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~---~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|+|.+.+..+.... .+..   .....+|.+........+.+|+.++|.|.+.|. |.| +|+|+++|..+....
T Consensus       188 ~d~G~Y~C~a~n~~~~~~~-~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~  266 (523)
T 2rcj_C          188 KSHRSYSCQVTHEGSTVEK-TVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHT  266 (523)
T ss_pred             CCCceEEEEEEecCccccc-ceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEe
Confidence            4778899998776543221 1111   112345666644444566899999999999987 888 899999998754322


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccc-ccCCccee-ehhhhHHHHH
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTL-SKTDSWYM-LVLGISVCVV  383 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~-~~~~~~~~~~  383 (610)
                      .....  ..++.+...+.|.|.+++.+| |.|+|.|.|..|.....+.|.|...   |.+ ...+.... +..+..+   
T Consensus       267 ~~~~~--~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~---P~~~~~~p~~~~~v~~g~~~---  337 (523)
T 2rcj_C          267 FPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL---PSVFLFPPKPKDTLMISRTP---  337 (523)
T ss_pred             CCcEe--cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC---ceEEecCCCchhhcccCCce---
Confidence            21111  122233456799999999999 9999999999999877777766422   221 11221111 1112222   


Q ss_pred             HHHHhheeEEEEEEeeecc------cccccccCCccc----cccccc------cccceeeeeeeeccCcceeeeecCCCc
Q psy10487        384 SVIVSIGMSFCVCRAHEHK------NKRRKRKGKMKQ----SVSFND------QEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                               .+.|...+.+      ...|.+.+..-.    ......      ....|.|.++..+|+|.|+|.|.|..|
T Consensus       338 ---------~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  408 (523)
T 2rcj_C          338 ---------EVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKAL  408 (523)
T ss_pred             ---------EEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCC
Confidence                     2223322211      112222111000    000011      123478888888999999999999888


Q ss_pred             ceeeeeecc
Q psy10487        448 DMELIEQSL  456 (610)
Q Consensus       448 ~~~~~~~l~  456 (610)
                      .......+.
T Consensus       409 ~~~~~~~~~  417 (523)
T 2rcj_C          409 PAPIEKTIS  417 (523)
T ss_pred             CCceeEEEE
Confidence            766555444

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.63  E-value=3.7e-16  Score=150.10  Aligned_cols=166  Identities=11%  Similarity=0.076  Sum_probs=102.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeee--EEEEEecCCCCCeE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV--SITLFNVTDLDAGE  336 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~  336 (610)
                      -+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......  ....     ...+  .|.|.+++.+|+|.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~--~~~~-----~~~~~~~L~I~~v~~~D~G~   78 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR--RLKF-----WNETDPEFVIDHMDANKAGR   78 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE--ECC---------CCCEEEECSCCGGGCEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc--cCCC-----CcceeeEEEEcccccccCEE
Confidence            4677777776 57899999999999987 78899999998765432210  0000     1224  89999999999999


Q ss_pred             EEEEeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc
Q psy10487        337 YTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM  412 (610)
Q Consensus       337 Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  412 (610)
                      |+|.|.|..|..  +..+.|.|.+....|.+...+.... ..+..+            .+.|.....+  ...|.+.+..
T Consensus        79 Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v-~~G~~v------------~L~C~~~~~~~~~~~W~k~g~~  145 (218)
T 1uct_A           79 YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL-MPGENI------------SLTCSSAHIPFDRFSLAKEGEL  145 (218)
T ss_dssp             EEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEE-CTTCCC------------EEEEECSSSCCSEEEEEETTCS
T ss_pred             EEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCcc-CCCCCE------------EEEEeCCCCCCCEEEEEECCCc
Confidence            999999987643  4457777755444455443333222 222221            2233111111  1112111110


Q ss_pred             c-ccccccccccceeeeeeeeccCcceeeeecCCC
Q psy10487        413 K-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       413 ~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      . ........++.|.|.+++.+|+|.|+|.|.|..
T Consensus       146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          146 SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             ccccccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            0 011122346789999999999999999999864

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.63  E-value=1e-16  Score=152.48  Aligned_cols=168  Identities=11%  Similarity=0.043  Sum_probs=107.5

Q ss_pred             cCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487        274 AGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI  352 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  352 (610)
                      .++.+.|.|.+.|. |.|.+.|+++|..+....+.......+      ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE------QIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT------EEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC------EEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            57778899998885 689999999999987654432222111      23699999999999999999999999888888


Q ss_pred             EEEcCcc------------------ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc
Q psy10487        353 SLDLPEI------------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM  412 (610)
Q Consensus       353 ~L~V~~~------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  412 (610)
                      .|.|...                  ..++.+...+....+..+..            +.+.|...+.+  ...|.+.+..
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~------------~~l~C~~~g~p~p~v~W~~~~~~  157 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA------------LNLTCNVWGDPPPEVSWLKNEKA  157 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCC------------EEEEEEEECSSCCEEEEEETTEE
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCe------------EEEEEEEcCCCCceEEEEECCeE
Confidence            8876320                  01111222222222222221            12233333332  2333322211


Q ss_pred             ---ccccccc---ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        413 ---KQSVSFN---DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       413 ---~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                         .......   +....|.|.+++.+|+|.|+|.|.|..|..+....|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence               1111111   2234899999999999999999999999998888887764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=1.9e-15  Score=139.55  Aligned_cols=120  Identities=28%  Similarity=0.489  Sum_probs=96.5

Q ss_pred             cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487        108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      +.+++++|++..++...+   .+|+.|+|++|.++.+.+..|.++++|+.|+|++|+|+.+++..|..+.+|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            567777777777765332   67777777777777777777777888888888888888887777778888888888888


Q ss_pred             cccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc
Q psy10487        188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK  230 (610)
Q Consensus       188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~  230 (610)
                      +|+.++...|..+++|+.|++++|+|.|+|. +.++..|+....
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~  135 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT  135 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence            8888888778889999999999999999996 889999987543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.63  E-value=3.1e-16  Score=173.43  Aligned_cols=223  Identities=17%  Similarity=0.114  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCCCccCCCcc----cccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeE----EEEe--CCE-
Q psy10487        231 LYSHPLSCTEPGMLQTKHW----DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI----LWLL--NGQ-  299 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~----~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v----~W~~--~g~-  299 (610)
                      .+.+.|+|.+.+. ++...    ..+.. .+..+|.+...+....+.+|+.++|.|.+.|.|.|.+    .|++  +|. 
T Consensus       300 ~d~G~Y~C~a~n~-g~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~  377 (585)
T 2ocw_A          300 EDAGRYLCGAHSD-GQLQEGSPIQAWQL-FVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRC  377 (585)
T ss_pred             hhCEEEEEEEEcC-CCccccCceeeEEE-EEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCC
Confidence            4667899998774 22111    12211 2234677777778888999999999999999999987    7999  887 


Q ss_pred             -EeccCCccceeeccCCceee---ee--eEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCccee
Q psy10487        300 -VLHNSSFDLLEEEEGDALFE---KS--VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM  373 (610)
Q Consensus       300 -~l~~~~~~~~~~~~~~~~~~---~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~  373 (610)
                       .+............++....   ..  ..|.|.+++.+|+|.|+|.| |..|.....+.|.|.+.  +|.+.. +....
T Consensus       378 ~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~--~p~~~~-~~~~~  453 (585)
T 2ocw_A          378 PLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG--EPNLKV-PGNVT  453 (585)
T ss_pred             ceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC--cccccc-CCcee
Confidence             44322110000000000000   11  25999999999999999999 99999988999988542  222222 33333


Q ss_pred             ehhhhHHHHHHHHH----hheeEEEEEEeeecccccccccCCccccccc---cccccceeeeeeeeccCcceeeeecCCC
Q psy10487        374 LVLGISVCVVSVIV----SIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF---NDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       374 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      +..+..+.+.|.+.    +.+.+.+.|.+.+.......... .......   ......|.|.+++.+|+|.|+|.|.|..
T Consensus       454 v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  532 (585)
T 2ocw_A          454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEG-PSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH  532 (585)
T ss_pred             EecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCC-CCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence            33333333333322    22222333333222111000000 0000011   1223589999999999999999999999


Q ss_pred             cceeee-eecccccC
Q psy10487        447 PDMELI-EQSLAMEQ  460 (610)
Q Consensus       447 G~~~~~-~~l~v~~~  460 (610)
                      |..+.. +.|.|.++
T Consensus       533 G~~~~~~~~l~V~~~  547 (585)
T 2ocw_A          533 FYGETAAVYVAVEER  547 (585)
T ss_pred             CccEEEEEEEEEEee
Confidence            977754 67777654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.63  E-value=2.1e-17  Score=167.62  Aligned_cols=210  Identities=9%  Similarity=0.014  Sum_probs=127.3

Q ss_pred             cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe----------cCCCeEEEEeCCE
Q psy10487        230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG----------DPEPTILWLLNGQ  299 (610)
Q Consensus       230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g----------~P~p~v~W~~~g~  299 (610)
                      ..+.+.|+|.+.+..+... ..+.... ..+|.+...+....+.+|+.+.|.|.+.|          .|.|.+.|++++.
T Consensus        70 ~~d~G~Y~C~~~n~~g~~~-~~~~l~v-~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~  147 (317)
T 2y25_A           70 KKDAGIYEVILKDDRGKDK-SRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS  147 (317)
T ss_dssp             STTCSCEEEEEESSSCEEE-EEECCST-HHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSS
T ss_pred             cccCeEEEEEEECCCCcEE-EEEEEEE-ecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCE
Confidence            3467889998866544221 1111111 11233333344555667888888888877          7999999999998


Q ss_pred             EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc-----------------ccc
Q psy10487        300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI-----------------NLA  362 (610)
Q Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-----------------~~~  362 (610)
                      .+....+.......      ....|.|.+++.+|+|.|+|.|.|..|....++.+.|...                 ...
T Consensus       148 ~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T 2y25_A          148 AIRYSDRVKTGVTG------EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR  221 (317)
T ss_dssp             BCCCCSSEEEEECS------SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             ECCCCCCeEEeccC------CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence            88765432222111      1246999999999999999999999999988888876311                 001


Q ss_pred             ccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc---ccccccc---ccccceeeeeeeec
Q psy10487        363 TTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM---KQSVSFN---DQEKKLLDVSITTT  433 (610)
Q Consensus       363 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~---~~~~~L~i~~v~~~  433 (610)
                      |.+.. .+....+..+..+            .+.|...+.  +...|.+.+..   .......   .....|.|.+++.+
T Consensus       222 p~~~~~~~~~~~v~~g~~~------------~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  289 (317)
T 2y25_A          222 ARVLGGLPDVVTIQEGKAL------------NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA  289 (317)
T ss_dssp             CEEEEBCCSEEEEETTSBB------------CEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCST
T ss_pred             CcccccCCccEEEEcCCEE------------EEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHH
Confidence            11111 1222222222221            223333322  22233322211   1111111   22238999999999


Q ss_pred             cCcceeeeecCCCcceeeeeeccccc
Q psy10487        434 DRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       434 D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      |+|.|+|.|.|..|..+..+.|.|..
T Consensus       290 d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          290 DSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             TCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             HCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            99999999999999999988887763

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=146.01  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=115.8

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+ ..+..+.+.+|+.++|.|.+.|.|.|.|.|+++|..+.............    ...+.|.|.+++.+|+|.|+
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT----PSASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEE----TTEEEEEECCCSGGGCEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecC----CCeeEEEEecCChhhCeEEE
Confidence            35666 46667889999999999999999999999999999887654322221111    11468999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCC---cceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTD---SWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQS  415 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (610)
                      |.|.|..|.....+.|.|...+.+|......   ....+.....    ....+.++..+....+.....   .|......
T Consensus        93 C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p----~~~~~~pi~~y~v~~~~~~~~---~w~~~~~~  165 (215)
T 3mtr_A           93 CTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEP----EATGGVPILKYKAEWRAVGEE---VWHSKWYD  165 (215)
T ss_dssp             EEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECC----SCCCSSCEEEEEEEEEETTCC---CCEEEEEE
T ss_pred             EEEEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecC----CccCCCceEEEEEEEEECCCC---cccccccc
Confidence            9999999999999999986555444322110   0000000000    000000111000000110000   01100000


Q ss_pred             ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        416 VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       416 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ......+..|.|.++...|.|.|.|.|.|..|..+.+..+.+.
T Consensus       166 ~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          166 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             HHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             cccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            1111223679999999999999999999999987776666544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.63  E-value=2.2e-16  Score=149.81  Aligned_cols=175  Identities=13%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc------cc-eee---ccCCceeeeeeEEEEEecCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF------DL-LEE---EEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~------~~-~~~---~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      +.+.+....+.+|++++|.|.+.+.|.+.+.|++++........      .. ...   ..++......+.|.|.+++.+
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~   81 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK   81 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence            34556667889999999999998999999999987543221110      00 000   011111222358999999999


Q ss_pred             CCeEEEEEeecCC-cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccC
Q psy10487        333 DAGEYTCYAENIR-GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKG  410 (610)
Q Consensus       333 D~G~Y~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  410 (610)
                      |+|.|+|.+.|.. +.....+.|.|......|.+......  +..+..            +.+.|.....+ ...|.+.+
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~------------v~l~C~~~~~pp~i~W~~~g  147 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDS------------VTLTCLSNDIGANIQWLFNS  147 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCC------------EEEEEECSCTTCEEEEEETT
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCC------------EEEEEECCCCCCceEEEECC
Confidence            9999999999995 66777888888654444444333332  111111            12233322221 11222211


Q ss_pred             C---ccccccccccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        411 K---MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       411 ~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .   ..........+..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus       148 ~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          148 QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             EECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             EeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence            1   1112222334478999999999999999999999998665

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.62  E-value=6.5e-16  Score=154.57  Aligned_cols=175  Identities=21%  Similarity=0.266  Sum_probs=109.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ++|.+...+..+.+.+|+.++|.|.+.|.|. .+.|++ +|..+....+..... ++     ....|.|.+++.+|+|.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~-~~-----~~~~L~i~~~~~~D~G~Y   75 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-EG-----VRSRLTIYNANIEDAGIY   75 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEE-ET-----TEEEEEECSCCGGGCEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEec-CC-----CEEEEEEccCCcccCEEE
Confidence            5788999999999999999999999999885 899999 676665443321111 11     124899999999999999


Q ss_pred             EEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc
Q psy10487        338 TCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV  416 (610)
Q Consensus       338 ~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (610)
                      +|.|.|..|.. ...+.|.|..   +|.+...+....+..+..+.+.|.+.+.+...+.|.+.......      .....
T Consensus        76 ~C~~~n~~g~~~~~~~~l~v~~---~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------~~~~~  146 (291)
T 2wim_A           76 RCQATDAKGQTQEATVVLEIYQ---KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------ISDNR  146 (291)
T ss_dssp             EEEEECSSSCEEEEEEEEEEEC---CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CB------CCCSS
T ss_pred             EEEEecccCceEEEEEEEEecC---CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc------cCCce
Confidence            99999999876 4577777732   23333333333222222222222222222222222222211100      00111


Q ss_pred             cccccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        417 SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       417 ~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      .....++.|.|.+++.+|+|.|+|.|.|..+..
T Consensus       147 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~  179 (291)
T 2wim_A          147 FAMLANNNLQILNINKSDEGIYRCEGRVEARGE  179 (291)
T ss_dssp             EEECTTSCEEETTCCGGGCEEEEEEEEETTTTE
T ss_pred             EEEccCCCEEEEecchhhCEEEEEEEEECCCCe
Confidence            112345679999999999999999999987543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.62  E-value=4.1e-16  Score=147.10  Aligned_cols=167  Identities=17%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+. ..+.+|++++|.|.+.|.|. .+.|+|+|..+..........       ...+.|.|.+++.+|+|.|+|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C   75 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQEL-------VKKGQFPIPSITWEHTGRYRC   75 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHH-------HTTTEEEESSCCGGGCEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccC-------CcccEEEECCCCHHHCeEEEE
Confidence            577777666 47889999999999999876 799999998764321110001       112489999999999999999


Q ss_pred             EeecCC-c--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-ccccccccCCcc--
Q psy10487        340 YAENIR-G--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KNKRRKRKGKMK--  413 (610)
Q Consensus       340 ~a~N~~-G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  413 (610)
                      .|.|.. |  ..+..+.|.|......|.+...+...... +..+            .+.|..... +...|.+.+...  
T Consensus        76 ~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~-G~~v------------~L~C~~~~~~~~v~W~k~g~~~~~  142 (198)
T 1ugn_A           76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS-GGNV------------TLQCDSQVAFDGFILCKEGEDEHP  142 (198)
T ss_dssp             EEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEET-TCCE------------EEEEECSSCCSEEEEEEC------
T ss_pred             EEECCCCCcccCCccEEEEEcccccCCccccCCccccCC-CCcE------------EEEEecCCCCcEEEEEECCCccCC
Confidence            999988 6  34567778775533344443333222222 2221            223332222 111222211110  


Q ss_pred             cccc--c---cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        414 QSVS--F---NDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       414 ~~~~--~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ....  .   ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus       143 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          143 QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             ccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            0000  0   112468999999999999999999998764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.62  E-value=9.8e-17  Score=184.75  Aligned_cols=208  Identities=17%  Similarity=0.170  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~  309 (610)
                      +.+.|+|.+.+..+......+.... ..+|.+.. ......+.+|+.++|.|.+.+.|.| .+.|+++|..+........
T Consensus       591 d~G~Y~C~a~n~~g~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~  669 (816)
T 3dmk_A          591 DQATYTCVAKNQEGYSARGSLEVQV-MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITT  669 (816)
T ss_dssp             HCEEEEEEEEESSSCEEEEEEEEEE-ECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEE
T ss_pred             cCEEEEEEEEECCCceeeeeEEEEE-ecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeE
Confidence            5678999987765432222222222 23344332 3355668899999999999876665 8999999988865433221


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI  389 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (610)
                      ....     ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.   .+|.+...+....+..+..+.        
T Consensus       670 ~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---~~P~~~~~~~~~~v~~G~~v~--------  733 (816)
T 3dmk_A          670 SRVG-----RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---VPPRWILEPTDKAFAQGSDAK--------  733 (816)
T ss_dssp             EEET-----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE---EEEEEEECCCCEEEETTCCEE--------
T ss_pred             EEcC-----CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE---eCCceeeecccceecCCCcEE--------
Confidence            1111     123589999999999999999999999999999888884   334444444433333222211        


Q ss_pred             eeEEEEEEeeecccccccccCCc--------cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        390 GMSFCVCRAHEHKNKRRKRKGKM--------KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                        +.|.....+.+...|.+....        .........++.|.|.+++.+|+|.|+|.|.|..|.+..+..+...
T Consensus       734 --l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~  808 (816)
T 3dmk_A          734 --VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV  808 (816)
T ss_dssp             --EECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             --EEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence              233333333333344332211        0000111245689999999999999999999999999887776544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=3.8e-15  Score=153.56  Aligned_cols=169  Identities=23%  Similarity=0.254  Sum_probs=127.0

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      +.++..+.++..++. .-..+|+.|++++|.+..+..  +.  .+.+|+.|++++|.+..+.+  +..+++|++|+|++|
T Consensus       158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            567777777777663 223578888888888887765  44  57788888888888877755  777888888888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      ++..+++  +..+++|+.|+|++|.++.+.  .+..+++|+.|++++|++..+  ..+..+++|+.|++++|.+......
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence            8877765  777788888888888877763  467778888888888888776  3467777888888888888777777


Q ss_pred             cccCCCcccEEecCCCcccccC
Q psy10487        196 VFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      .+..+++|+.|++++|++....
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCG
T ss_pred             HhhccccCCEEEccCCcccccc
Confidence            7777788888888888776543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.62  E-value=1.5e-16  Score=161.13  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=110.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+|.+.. +....+.+|+.++|.|.+.|. |.|.+.|+++|..+....+....        .....|.|.+++.+|+|.|
T Consensus         6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y   76 (317)
T 2y25_A            6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--------DGICTLLITEFSKKDAGIY   76 (317)
T ss_dssp             SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------------CCEEEEETTCCSTTCSCE
T ss_pred             CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--------CCeEEEEEccCCcccCeEE
Confidence            4577764 446889999999999999988 88999999999988754432111        1225899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee------------ccccc
Q psy10487        338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE------------HKNKR  405 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  405 (610)
                      +|.|.|..|.....+.|.|...   |.+.....            ...+.....+.+.|....            .+...
T Consensus        77 ~C~~~n~~g~~~~~~~l~v~~~---~~~~~~~~------------~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~  141 (317)
T 2y25_A           77 EVILKDDRGKDKSRLKLVDEAF---KELMMEVC------------KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVN  141 (317)
T ss_dssp             EEEEESSSCEEEEEECCSTHHH---HHHHHHHH------------HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEE
T ss_pred             EEEEECCCCcEEEEEEEEEecC---ccccccCC------------ceecccCCCeEEEeeccccEEEEEeccCCCCcEEE
Confidence            9999999998877777666321   11100000            000000011111222111            22222


Q ss_pred             ccccCCc---cccccc--cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        406 RKRKGKM---KQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       406 ~~~~~~~---~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      |.+.+..   ......  ......|.|.+++.+|+|.|+|.|.|..|..+....+.+.
T Consensus       142 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  199 (317)
T 2y25_A          142 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ  199 (317)
T ss_dssp             EEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeee
Confidence            3222111   011111  1223359999999999999999999999998888777643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=1.3e-15  Score=142.48  Aligned_cols=163  Identities=16%  Similarity=0.081  Sum_probs=102.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+.......  .     .....+.|.|.+++.+|+|.|+|
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~-----~~~~~~~L~I~~v~~~D~G~Y~C   74 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP--P-----ERINKVKFYIPDMNSRMAGQYSC   74 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS--C-----TTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc--C-----CCcceeEEEeCcCCcccCeEEEE
Confidence            5777777766 7899999999999876 457899999998765321100  0     01234689999999999999999


Q ss_pred             EeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc-
Q psy10487        340 YAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV-  416 (610)
Q Consensus       340 ~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  416 (610)
                      .|.|..|.  .+..+.|.|.+....|.+...+......+ ..+            ...|.....+.  ...|.+.+..+ 
T Consensus        75 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G-~~v------------~L~C~~~~~~~--~~~w~k~g~~~~  139 (188)
T 1oll_A           75 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG-EKV------------TFYCRLDTATS--MFLLLKEGRSSH  139 (188)
T ss_dssp             EEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETT-CEE------------EEEEECSSSCS--EEEEEEESSSCE
T ss_pred             EecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccC-CEE------------EEEEEcCCCCC--EEEEEECCcccc
Confidence            99998664  34567777754443444443333222222 111            22332221111  01111111111 


Q ss_pred             ---cccccccceeeeeeeeccCcceeeeecCCC
Q psy10487        417 ---SFNDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       417 ---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                         .....++.|.|.+++.+|+|.|+|.|.|..
T Consensus       140 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          140 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             ccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence               122456789999999999999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=1.6e-15  Score=151.10  Aligned_cols=153  Identities=22%  Similarity=0.282  Sum_probs=138.0

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      ..++..+..+..++....     .+|++|+|++|.+..+.+..|.++++|++|+|++|++..+.+..|.++++|++|+|+
T Consensus        10 ~~~~c~~~~l~~ip~~l~-----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC-----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEEecCCCccccCCCCC-----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence            356777778888876432     479999999999999998899999999999999999999999899999999999999


Q ss_pred             CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC-cccccCCCcccEEecCCCcccc
Q psy10487        138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS-ESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      +|.++.+.+..|.++++|+.|++++|++..+.+..+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.+..
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            99999999889999999999999999999998777899999999999999999865 6678889999999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.62  E-value=3e-15  Score=167.10  Aligned_cols=176  Identities=19%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             cEEEcCCCCCCccCcccCC----CccEEEeecCCCCCCChhhhc-----ccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487         37 KSALCKDANFTALPSTLDS----DIQVLDLNNNKISYLTKEAFK-----SIGLLNLQRIYLKNSGIREVHRDTFKYLTIL  107 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~----~L~~L~L~~n~i~~l~~~~~~-----~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L  107 (610)
                      +.++..+++++.+|..+..    +|++|+|++|.|+...+..|.     ...+.+|++|+|++|.+..++...|..+++|
T Consensus       380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            3455555555555543321    455555555555443333222     0123345555555555555544444445555


Q ss_pred             cEEEccCCCCCCCCcccccCCC-------CCcEEEeeCccccccCcCcC-CCCCCccEEEccCccccccCHHHhhcCccc
Q psy10487        108 VEVDLSDNQIAWLHQDTFLGND-------RLKVLYLNGNPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHLTAL  179 (610)
Q Consensus       108 ~~LdLs~n~l~~l~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  179 (610)
                      ++|+|++|+|..++...|....       +|+.|+|++|.++.++...+ ..+++|+.|+|++|+|+.+ +..+..+++|
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L  538 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTL  538 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSC
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCC
Confidence            5555555555544444333322       45555555555554433222 2445555555555555443 2334444455


Q ss_pred             cccccc------cccccccCcccccCCCcccEEecCCCcc
Q psy10487        180 ESLNLN------GNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       180 ~~L~L~------~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      +.|+|+      +|++.+..+..+..+++|+.|++++|.+
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            555442      2333333333444444445555554444

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.61  E-value=7.8e-16  Score=145.94  Aligned_cols=171  Identities=13%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             eeeeecceE-eecCceEEEEEEEEecCCCeEEEEeCC-EEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        263 VTIKESMVI-REAGGNVTMSCYVYGDPEPTILWLLNG-QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       263 i~~~~~~~~-v~~G~~v~l~C~~~g~P~p~v~W~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      +.+.+.... +.+|++++|.|.+.|.|.|.+.|++.. ..+..    ... ..+     ..+.|.|.+++.+|+|.|+|.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~----~~~-~~~-----~~~~L~I~~v~~~D~G~Y~C~   72 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG----KVT-NEG-----TTSTLTMNPVSFGNEHSYLCT   72 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS----EEE-EET-----TEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc----eEE-EcC-----CccEEEECcCCHHHCEEEEEE
Confidence            344555544 459999999999999999999999843 21110    000 011     134799999999999999999


Q ss_pred             eecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-----ccccccCCc--c
Q psy10487        341 AENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-----KRRKRKGKM--K  413 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~  413 (610)
                      |.|..|..+..+.|.|...+..+.+...   ..+..+..            +...|...+.+.     ..|.+.+..  .
T Consensus        73 a~n~~~~~~~~~~l~V~~~p~~~~~~~~---~~~~~G~~------------~~L~C~~~~~~p~~~~~i~W~k~~~~l~~  137 (202)
T 1vca_A           73 ATCESRKLEKGIQVEIYSFPKDPEIHLS---GPLEAGKP------------ITVKCSVADVYPFDRLEIDLLKGDHLMKS  137 (202)
T ss_dssp             EEETTEEEEEEEEEEEEBCCSCCEEEES---SCEETTSC------------EEEEEEEEEEBSGGGEEEEEEETTEEEEE
T ss_pred             EEECCceEeeEEEEEEEeCCCCCEeCCc---eEEcCCCC------------EEEEEEECCcCCCCCeEEEEEeCCeECcc
Confidence            9999998888899988543332222221   11111111            123444333211     123222110  0


Q ss_pred             cccc-------ccccccceeeeeeeeccCcceeeeecCCCcce-------eeeeecccc
Q psy10487        414 QSVS-------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDM-------ELIEQSLAM  458 (610)
Q Consensus       414 ~~~~-------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-------~~~~~l~v~  458 (610)
                      ....       .......|.|..+..+|.|.|+|.|.|..|..       +....|.|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~  196 (202)
T 1vca_A          138 QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY  196 (202)
T ss_dssp             EECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             cccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence            0000       01122345667677778899999999998863       344555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=3e-15  Score=163.33  Aligned_cols=137  Identities=21%  Similarity=0.286  Sum_probs=97.8

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      ...+++.+++++.+|..++.+|++|+|++|.|+.++ .     .+++|++|+|++|.|+.++.  |..  +|++|+|++|
T Consensus        61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           61 FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN  130 (571)
T ss_dssp             CSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS
T ss_pred             ccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC
Confidence            578999999999999888899999999999999887 2     36788888888888888765  544  7778888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      +|+.++.    .+++|+.|+|++|.++.++.    .+++|+.|+|++|+|+.++.  |.  .+|+.|+|++|+|+.++.
T Consensus       131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          131 QLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             cCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            7777654    45667777777777666543    34556666666666655533  32  455555555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=2.9e-15  Score=163.51  Aligned_cols=156  Identities=20%  Similarity=0.314  Sum_probs=135.7

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      -+.++..+++++.+| .+..+|++|+|++|.|+.++.  |.  +  +|++|+|++|.|+.++.    .+++|++|+|++|
T Consensus        82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence            478999999999999 778899999999999999887  54  2  89999999999999875    6889999999999


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccc-------ccccccccc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL-------ESLNLNGNR  188 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~  188 (610)
                      +|+.++.    .+++|+.|+|++|.++.++.  |.  ++|+.|+|++|+|+.++.  |..  +|       +.|+|++|+
T Consensus       151 ~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          151 QLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSC
T ss_pred             ccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence            9999875    57899999999999999766  55  899999999999998865  443  67       999999999


Q ss_pred             ccccCcccccCCCcccEEecCCCcccc
Q psy10487        189 LKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       189 l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      |+.++...+ .+++|+.|++++|++.+
T Consensus       219 l~~lp~~l~-~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          219 ITHIPENIL-SLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred             ceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence            999987665 49999999999999876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=5e-16  Score=157.67  Aligned_cols=175  Identities=17%  Similarity=0.106  Sum_probs=106.4

Q ss_pred             CcEEEcCCCCCC-ccCccc----CCCccEEEeecCCCCCCCh----hhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         36 KKSALCKDANFT-ALPSTL----DSDIQVLDLNNNKISYLTK----EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        36 ~~~~~C~~~~l~-~lP~~l----~~~L~~L~L~~n~i~~l~~----~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      -+.++..+++++ .+|..+    ..+|++|+|++|.|+....    ..+.  .+++|++|+|++|.+..+.+..|+.+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            356666666665 334333    3467777777777765322    2222  4667777777777777777777777777


Q ss_pred             CcEEEccCCCCCC---CC-cccccCCCCCcEEEeeCccccccCcC---cCCCCCCccEEEccCccccccCHHHhhcC---
Q psy10487        107 LVEVDLSDNQIAW---LH-QDTFLGNDRLKVLYLNGNPITELRAG---QFPKLPYLKTIELQHCQIHSVHKDALIHL---  176 (610)
Q Consensus       107 L~~LdLs~n~l~~---l~-~~~f~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---  176 (610)
                      |++|+|++|++..   +. ...+..+++|++|+|++|.++.+...   .+..+++|+.|+|++|+|..+.+..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            7777777777643   21 12235566677777777766544321   23455667777777777666644444443   


Q ss_pred             ccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       177 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      ++|+.|+|++|+|+.++...+   ++|+.|++++|.+..
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCS
T ss_pred             CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCC
Confidence            466777777777766654332   466666777666653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.61  E-value=2.4e-15  Score=159.92  Aligned_cols=126  Identities=15%  Similarity=0.254  Sum_probs=85.1

Q ss_pred             CCCCCCCCCCCCccCCCcc--cccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccCC-
Q psy10487        231 LYSHPLSCTEPGMLQTKHW--DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNSS-  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~--~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~~-  305 (610)
                      .+.+.|+|.+.+.......  ..+.......+|.+...+....+.+|+.++|.|.+.| .|.| .|.|+++|..+.... 
T Consensus        85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  164 (438)
T 1qgc_4           85 DDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  164 (438)
T ss_dssp             GGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             cCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCce
Confidence            3678899998776532111  1222222224677766554444456889999999988 6778 899999999887652 


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .........++.+...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~  215 (438)
T 1qgc_4          165 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR  215 (438)
T ss_dssp             EEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEET
T ss_pred             eccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccc
Confidence            111222223334455679999999999999999999999998655555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=3.1e-15  Score=150.28  Aligned_cols=148  Identities=23%  Similarity=0.331  Sum_probs=133.4

Q ss_pred             CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      ..+|+.|++++|.|+.++.  +.  .+++|++|+|++|.+..+.+  |..+++|++|+|++|++..++.  +..+++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred             cCcccEEEccCCCcccChh--Hh--cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            3589999999999999863  55  68999999999999999876  8999999999999999998754  899999999


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      |+|++|.++.+.  .+..+++|+.|+|++|+++.+  ..+..+++|+.|++++|+++++.+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            999999999874  478899999999999999998  568899999999999999999876  78899999999999987


Q ss_pred             cc
Q psy10487        214 CC  215 (610)
Q Consensus       214 ~c  215 (610)
                      ..
T Consensus       191 ~~  192 (291)
T 1h6t_A          191 SD  192 (291)
T ss_dssp             CB
T ss_pred             CC
Confidence            54

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.7e-15  Score=141.56  Aligned_cols=147  Identities=20%  Similarity=0.231  Sum_probs=127.6

Q ss_pred             CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      -+.+++.+++++.+| .+  ..+|++|+|++|.++.++  .+.  ++++|++|+|++|.+....+..|..+++|++|+|+
T Consensus        46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            367899999999988 44  458999999999888765  455  68999999999999998777789999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCcc-ccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      +|++....+..|..+++|++|+|++|. ++.+.  .+..+++|+.|++++|+++.+.  .+..+++|+.|++++|+|.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            999998777889999999999999998 88875  4888999999999999999885  67889999999999998754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.61  E-value=7.3e-16  Score=158.06  Aligned_cols=179  Identities=15%  Similarity=0.093  Sum_probs=115.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEE-------ecCCCeEEEEeCCEEeccCC--ccceeeccCCceeeeeeEEEEEecC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVY-------GDPEPTILWLLNGQVLHNSS--FDLLEEEEGDALFEKSVSITLFNVT  330 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~-------g~P~p~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~  330 (610)
                      .|.+...+..+.+.+|+.++|.|.+.       |.|.+.|.|++++..+....  .....        ...+.|.|.+++
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--------~~~~~L~i~~v~   89 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW--------AQDGALWLLPAL   89 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE--------EETTEEEESSBC
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE--------eeCCeEEECCCC
Confidence            36777888899999999999999998       99999999999988742221  11111        233589999999


Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE-----eeec--cc
Q psy10487        331 DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR-----AHEH--KN  403 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~  403 (610)
                      .+|+|.|+|.|.|..|.....+.|.|.............. ..+..+..            +.+.|.     ..+.  +.
T Consensus        90 ~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~-~~~~~g~~------------v~l~C~~~~~~~~g~p~~~  156 (339)
T 3o4o_C           90 QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP-QILTLSTS------------GVLVCPDLSEFTRDKTDVK  156 (339)
T ss_dssp             TTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEE-EEEETTSC------------EEEECCSCTTTCCSSSCCC
T ss_pred             cccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccc-eEEECCCC------------EEEEecCCcccccCCCCce
Confidence            9999999999999999988888888854322210000000 11111111            123333     2222  22


Q ss_pred             ccccccCCcc----ccccccccccceeeeeeeeccCcceeeeecCCCc----ceeeeeeccccc
Q psy10487        404 KRRKRKGKMK----QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQP----DMELIEQSLAME  459 (610)
Q Consensus       404 ~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G----~~~~~~~l~v~~  459 (610)
                      ..|.+.+..-    .........+.|.|.+++.+|+|.|+|.|.|..|    .......|.|.+
T Consensus       157 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             BCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred             EEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence            2232221110    1111222335799999999999999999999888    345566666654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.61  E-value=1.1e-16  Score=166.04  Aligned_cols=197  Identities=11%  Similarity=0.010  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|+|.+.+......+   ....      +...+ ...+.+|++++|.|.+.|.|.|.+.|++++..+..       
T Consensus        77 ~D~G~Y~C~~~n~~~~~~l---~V~~------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------  139 (363)
T 1wio_A           77 EDSDTYICEVEDQKEEVQL---LVFG------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------  139 (363)
T ss_dssp             GGCEEEEEEETTEEEEEEE---EEEE------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE-------
T ss_pred             HHCEEEEEEEEECCCcEEE---EEEe------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc-------
Confidence            4678899988776431111   1111      12222 24678999999999999999999999998754421       


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh--
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS--  388 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--  388 (610)
                               ..+.|.|.+++.+|+|.|+|.|.|..+.....+.+.|...+..+      ....+..+..+.+.|.+.+  
T Consensus       140 ---------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~------~~~~~~~G~~v~l~C~~~~~~  204 (363)
T 1wio_A          140 ---------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS------SIVYKKEGEQVEFSFPLAFTV  204 (363)
T ss_dssp             ---------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE------EEEEEETBCCEEEECCCCCCC
T ss_pred             ---------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC------CceEEecCCEEEEEEEEeccc
Confidence                     22489999999999999999999998887777777774322221      1111211222222222211  


Q ss_pred             ---heeEEEEEEeeecccccc-cccCCccccccc------------cccccceeeeeeeeccCcceeeeecCC--Cccee
Q psy10487        389 ---IGMSFCVCRAHEHKNKRR-KRKGKMKQSVSF------------NDQEKKLLDVSITTTDRHTGSCEALGS--QPDME  450 (610)
Q Consensus       389 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~--~G~~~  450 (610)
                         .+...+.|.+.+...... .........+..            .+....|.|.+++.+|+|.|+|.|.|.  .|..+
T Consensus       205 ~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~  284 (363)
T 1wio_A          205 EKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH  284 (363)
T ss_dssp             CSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE
T ss_pred             ccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE
Confidence               122233333322211100 000000111111            122348999999999999999999999  99998


Q ss_pred             eeeeccccc
Q psy10487        451 LIEQSLAME  459 (610)
Q Consensus       451 ~~~~l~v~~  459 (610)
                      ..+.|.|.+
T Consensus       285 ~~~~l~V~~  293 (363)
T 1wio_A          285 QEVNLVVMR  293 (363)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEeEEEEE
Confidence            888888763

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.61  E-value=9e-16  Score=144.32  Aligned_cols=175  Identities=16%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             eecceEeecCceEEEEEE-EEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        266 KESMVIREAGGNVTMSCY-VYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~-~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      .+..+.+.+|+.+.|.|. +.|.|. +.+.|++++..+............      ..+.|.|.+++.+|+|.|+|.|.|
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ------TNGNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT------TTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc------CCCeEEECcCCcccCeEEEEEEEe
Confidence            446788999999999999 899999 999999998776532221111111      124799999999999999999999


Q ss_pred             CCcceeE---EEEEEcCc----cccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc-c
Q psy10487        344 IRGNASG---EISLDLPE----INLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM-K  413 (610)
Q Consensus       344 ~~G~~~~---~~~L~V~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~  413 (610)
                      ..+....   .+.+.+..    ...+|.+........+..+..            +.+.|....  .+...|.+.... .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~v~W~~~~~~~~  155 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN------------VTLECFALGNPVPDIRWRKVLEPMP  155 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCC------------EEEEEEEEEESCCEEEEEETTBCCC
T ss_pred             cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCc------------EEEEEEccCCCCCceEEEeCCCcCC
Confidence            8776543   23333311    112222222222222222111            123333333  333334332221 1


Q ss_pred             ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ........+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       156 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            111223456689999999999999999999999999888777653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.60  E-value=1.3e-15  Score=148.78  Aligned_cols=185  Identities=14%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             eeecceEeecCceEEEEEEEEe---cCCCeEEEEeCCEEec----cC-C--------------ccceeeccCCceee---
Q psy10487        265 IKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLH----NS-S--------------FDLLEEEEGDALFE---  319 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g---~P~p~v~W~~~g~~l~----~~-~--------------~~~~~~~~~~~~~~---  319 (610)
                      ..+..+.+.+|++++|.|.+.|   .|.|.|.|++++....    .. .              ..........+...   
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3456788999999999999998   8999999999874320    00 0              00000000000000   


Q ss_pred             -eeeEEEEEecCCCCCeEEEEEeecCCcce-----eEEEEEEcCcccccccccc-CCcceeehhhhHHHHHHHHHhheeE
Q psy10487        320 -KSVSITLFNVTDLDAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMS  392 (610)
Q Consensus       320 -~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  392 (610)
                       ....|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|.....++.+.. .+....+..+..+.+.|.+.+.+..
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence             12489999999999999999999988753     5688888865432333222 2222222223333333333332222


Q ss_pred             EEEEEeeecccccccccC------------Cc--ccc--ccc-cccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        393 FCVCRAHEHKNKRRKRKG------------KM--KQS--VSF-NDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~------------~~--~~~--~~~-~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      .+.|.+...... +....            ..  ...  ... ......|.|.+++.+|+|.|+|.|.|..|...
T Consensus       167 ~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g  240 (250)
T 2fbo_J          167 NVTWYTGPTFFE-NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD  240 (250)
T ss_dssp             EEEEEEEEECSS-CSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGG
T ss_pred             eeEEEeCCCccc-ccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccC
Confidence            333433332211 00000            00  000  000 01336899999999999999999999666443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.60  E-value=7.2e-15  Score=141.55  Aligned_cols=174  Identities=12%  Similarity=0.145  Sum_probs=99.1

Q ss_pred             cceEeecCceEEEEEEEEecCCC---eEEEEeCCEEe-----------ccCCc----cceeeccCCceeeeeeEEEEEec
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVL-----------HNSSF----DLLEEEEGDALFEKSVSITLFNV  329 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l-----------~~~~~----~~~~~~~~~~~~~~~~~L~I~~v  329 (610)
                      ..+.+.+|++++|.|.+.+.|.+   .|.|+|++...           .....    .+..... .........|+|.++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~-~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRIHNV   90 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEEC-TTGGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEec-ccccCCeEEEEEeeC
Confidence            45788999999999999987765   69999976321           11000    0000000 000112458999999


Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee---ecccccc
Q psy10487        330 TDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH---EHKNKRR  406 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  406 (610)
                      +.+|+|.|+|.|.|..|.....+.+.+......+     ........+..            +.+.|...   +.+...|
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~g~~------------v~l~c~~~g~~P~p~i~W  153 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVAALGSDL-----HVDVKGYKDGG------------IHLECRSTGWYPQPQIQW  153 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCC-----EEEEEEEETTE------------EEEEEEEEEEBSCCEEEE
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeeccceecc-----cceeeeccCCc------------eeeEEEeccCCCCCEEEE
Confidence            9999999999999999988887777663221111     11111111111            12333333   3334444


Q ss_pred             cccCCcc---c-cccccccccc---eeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        407 KRKGKMK---Q-SVSFNDQEKK---LLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       407 ~~~~~~~---~-~~~~~~~~~~---L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .+.....   . .....+.++.   +.+.+++.+|+|.|+|.|.|..|..+..+.+.|.+
T Consensus       154 ~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          154 SNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             ECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             EECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            3321110   0 0111123332   33456788899999999999999999998888765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.60  E-value=6.2e-17  Score=184.98  Aligned_cols=222  Identities=13%  Similarity=0.108  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceee
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE  311 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~  311 (610)
                      +.+.|.|.+.+..+.... .+... +..+|.+...+. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+..........
T Consensus       524 d~G~Y~C~a~N~~g~~~~-~~~l~-V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~  600 (772)
T 3v2a_R          524 VSALYKCEAVNKVGRGER-VISFH-VTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT  600 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCeEEEEEEEccccccce-eEEEE-EECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccc
Confidence            457899999887653321 11111 123566655544 457789999999999999999999999987664332211100


Q ss_pred             -----------ccCC---ceeeeeeEEEEEecCCCCCeEEEEEeecCCccee--EEEEEEcCccccccccccCCcceeeh
Q psy10487        312 -----------EEGD---ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS--GEISLDLPEINLATTLSKTDSWYMLV  375 (610)
Q Consensus       312 -----------~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~~~~~  375 (610)
                                 ....   ........|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|.. ..+|.+...+....+.
T Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~-~~~P~~~~~~~~~~v~  679 (772)
T 3v2a_R          601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE-RVAPTITGNLENQTTS  679 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc-cCCCEeecCCCceEEe
Confidence                       0000   0001123599999999999999999999765433  344555531 3345555555544455


Q ss_pred             hhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        376 LGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .+..+.+.|.+.+.+...+.|.+.+..-.       ....+.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus       680 ~g~~~~l~C~~~g~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  752 (772)
T 3v2a_R          680 IGESIEVSCTASGNPPPQIMWFKDNETLV-------EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF  752 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCEEEEEEeCccCCCeEEEEECCeECc-------CCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEE
Confidence            55556666666655544444444332211       11122233446789999999999999999999999999999999


Q ss_pred             ccccCCCcc
Q psy10487        456 LAMEQPPVH  464 (610)
Q Consensus       456 ~v~~~pp~~  464 (610)
                      .|.++|...
T Consensus       753 ~V~~~p~~~  761 (772)
T 3v2a_R          753 IIEGAQEKT  761 (772)
T ss_dssp             ---------
T ss_pred             EEECCCCcc
Confidence            998765443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=8.6e-16  Score=142.77  Aligned_cols=158  Identities=15%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             eEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        270 VIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..+.+|+.++|.|.+.|.|.|  .+.|++++..+......           .....|.|.  +.+|+|.|+|.|.|.   
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----------~~~~~l~i~--~~~d~G~Y~C~~~n~---   71 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----------GQKTEFKVD--SDDQWGEYSCVFLPE---   71 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----------CSEEEEEEC--GGGCCEEEEEEEEST---
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----------CCcEEEEEe--chhhCeEEEEEEECC---
Confidence            466889999999999998888  89999999888655421           112356665  689999999999983   


Q ss_pred             eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCcc---------cc
Q psy10487        348 ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKMK---------QS  415 (610)
Q Consensus       348 ~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~  415 (610)
                      ....+.|.|..   +|.+...+....+..+..+            .+.|.....+   ...|.+.....         ..
T Consensus        72 ~~~~~~l~V~~---~P~~~~~~~~~~~~~g~~~------------~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~  136 (184)
T 3b5h_A           72 PMGTANIQLHG---PPRVKAVKSSEHINEGETA------------MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESR  136 (184)
T ss_dssp             TSCEEEEEECC---SCCCEESCSEEEECTTSCE------------EEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGT
T ss_pred             cCcEEEEEEec---CCceeecCCCcEEcCCCcE------------EEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCE
Confidence            33566777632   3344333333323222222            2233333222   12222200011         11


Q ss_pred             cccc--ccccceeeeeee-eccCcceeeeecCCCcceeeeeecccc
Q psy10487        416 VSFN--DQEKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       416 ~~~~--~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ....  .....|.|.+++ .+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       137 ~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            1111  223479999999 899999999999999999888877765

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.59  E-value=1.6e-16  Score=166.88  Aligned_cols=209  Identities=16%  Similarity=0.198  Sum_probs=125.2

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCce-eeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNV-TIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i-~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+..+......+..... .+|.+ ........+.+|+.++|.|.+ .|.|.+.+.|++++..........
T Consensus        87 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~-~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  165 (404)
T 3p3y_A           87 EYEGEYQCFARNKFGTALSNRIRLQVS-KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV  165 (404)
T ss_dssp             SSCEEEEEEEECSSCEEEEEEEEEEEC-CCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSE
T ss_pred             cCCEEEEEEEEcCCCeEeeeeEEEEEe-ccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcE
Confidence            467889999877654432223333222 33333 233455788999999999999 899999999999875443322211


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCC-CeEEEEEeecCCcceeE---EEEEEcCcc----ccccccccCC---cceeehhh
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLD-AGEYTCYAENIRGNASG---EISLDLPEI----NLATTLSKTD---SWYMLVLG  377 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~~G~~~~---~~~L~V~~~----~~~p~~~~~~---~~~~~~~~  377 (610)
                      ..        ...+.|.|.+++.+| +|.|+|.|.|..|....   .+.+.|...    ..+|.+....   ....+..+
T Consensus       166 ~~--------~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G  237 (404)
T 3p3y_A          166 SQ--------GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG  237 (404)
T ss_dssp             EE--------CTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETT
T ss_pred             EE--------cCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecC
Confidence            11        122479999999999 59999999999886422   244444211    1122222211   11112222


Q ss_pred             hHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487        378 ISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE  453 (610)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~  453 (610)
                      ..+            .+.|...+.+  ...|.+.+..  .........++.|.|.+++.+|+|.|+|.|.|..|..+...
T Consensus       238 ~~v------------~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  305 (404)
T 3p3y_A          238 MDL------------LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI  305 (404)
T ss_dssp             SCE------------EEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCE------------EEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence            221            2223222222  1122221111  11112234466899999999999999999999999999888


Q ss_pred             ecccccC
Q psy10487        454 QSLAMEQ  460 (610)
Q Consensus       454 ~l~v~~~  460 (610)
                      .+.|..+
T Consensus       306 ~l~V~~~  312 (404)
T 3p3y_A          306 SVRVKAA  312 (404)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            8887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=3.4e-15  Score=164.87  Aligned_cols=165  Identities=21%  Similarity=0.251  Sum_probs=133.3

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      .||..|.|... +...++|.+++++++|..++.+|+.|+|++|.|+.++.      .+++|++|+|++|.|+.++.    
T Consensus        30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----   98 (622)
T 3g06_A           30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----   98 (622)
T ss_dssp             HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred             cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence            57778888764 35789999999999999999999999999999998886      36799999999999998875    


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      .+++|++|+|++|+|..++.    .+.+|+.|+|++|.++.++..    +++|+.|+|++|+|+.++.    .+.+|+.|
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L  166 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKL  166 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred             CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEE
Confidence            67899999999999998875    568899999999998887652    4788899999988887742    34567777


Q ss_pred             ccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ++++|.|+.++    ..+++|+.|++++|.+.
T Consensus       167 ~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          167 WAYNNQLTSLP----MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             ECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCCCc----ccCCCCcEEECCCCCCC
Confidence            77777777665    23456677777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=7.9e-16  Score=155.82  Aligned_cols=179  Identities=21%  Similarity=0.274  Sum_probs=141.4

Q ss_pred             cEEEcCCCCCCccCc--cc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcc-cchhhhcCCCCCcEEE
Q psy10487         37 KSALCKDANFTALPS--TL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE-VHRDTFKYLTILVEVD  111 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~--~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~-i~~~~f~~l~~L~~Ld  111 (610)
                      +.++..+++++.++.  .+  ..+|++|+|++|.+..+.+..|.  ++++|++|+|++|.+.. ..+..|..+++|++|+
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc--cCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            455666666666553  22  24778888888888777777776  68889999999998876 5567889999999999


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcC-cccccccccccccc
Q psy10487        112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL-TALESLNLNGNRLK  190 (610)
Q Consensus       112 Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~  190 (610)
                      |++|++..+.+..|..+++|+.|+|++|.++.+....|..+++|+.|+|++|++..+.+..+..+ .+|+.|+|++|.+.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            99999999988899999999999999999999988889999999999999999999888888888 49999999999997


Q ss_pred             ccCcc--cccCCCcccEEecCCCcccccC
Q psy10487        191 HLSES--VFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       191 ~~~~~--~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      .....  ....+...+.+.+..+.+.|.-
T Consensus       262 ~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          262 CTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             cccChHHHHHHHHhhhhhhccccccccCC
Confidence            65431  1112333444556667777753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=9.8e-15  Score=150.44  Aligned_cols=163  Identities=26%  Similarity=0.322  Sum_probs=133.4

Q ss_pred             cEEEcCCC-CCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDA-NFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~-~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      +.++..++ .+..++ .+  ..+|++|++++|.+..+..  +.  .+++|+.|++++|.+..+.+  +..+++|+.|+++
T Consensus       135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  207 (347)
T 4fmz_A          135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY  207 (347)
T ss_dssp             CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCCccccccc--ccCCCccceeecc
Confidence            56777766 333443 23  3589999999999888775  54  68899999999999988865  7889999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      +|++..+.+  +..+++|+.|+|++|.++.+..  +..+++|+.|++++|.+..+  ..+..+++|+.|++++|.++.++
T Consensus       208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~  281 (347)
T 4fmz_A          208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS  281 (347)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh
Confidence            999988765  7888999999999999988876  78889999999999999887  35788889999999999998873


Q ss_pred             cccccCCCcccEEecCCCccc
Q psy10487        194 ESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~N~~~  214 (610)
                        .+..+++|+.|++++|.+.
T Consensus       282 --~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          282 --VLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             --GGGGCTTCSEEECCSSCCC
T ss_pred             --hhcCCCCCCEEECcCCcCC
Confidence              4777889999999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=3.2e-15  Score=151.70  Aligned_cols=157  Identities=17%  Similarity=0.072  Sum_probs=122.8

Q ss_pred             CccEEEeecCCCCCCChhhh--cccCCCCccEEEcccCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcccccCCC
Q psy10487         56 DIQVLDLNNNKISYLTKEAF--KSIGLLNLQRIYLKNSGIREVH----RDTFKYLTILVEVDLSDNQIAWLHQDTFLGND  129 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~--~~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~  129 (610)
                      +|++|+|++|.+....+..+  .  .+.+|++|+|++|.+....    ...+..+++|++|+|++|+|..+.+..|.+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             ceeEEEeeCCEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            48889999999887766665  4  6888999999999888632    24456788999999999999888888888999


Q ss_pred             CCcEEEeeCccccc---cCc-CcCCCCCCccEEEccCccccccCHH---HhhcCccccccccccccccccCcccccCC--
Q psy10487        130 RLKVLYLNGNPITE---LRA-GQFPKLPYLKTIELQHCQIHSVHKD---ALIHLTALESLNLNGNRLKHLSESVFFPT--  200 (610)
Q Consensus       130 ~L~~L~Ls~N~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--  200 (610)
                      +|++|+|++|.+..   +.. ..+..+++|+.|+|++|+|+.+...   .+..+.+|+.|+|++|++....+..+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999998764   322 3346788899999999998766432   35677899999999999988754444444  


Q ss_pred             -CcccEEecCCCccc
Q psy10487        201 -PNLKTLSLDGNPWC  214 (610)
Q Consensus       201 -~~L~~l~l~~N~~~  214 (610)
                       ++|+.|++++|.+.
T Consensus       250 ~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          250 SSALNSLNLSFAGLE  264 (310)
T ss_dssp             CTTCCCEECCSSCCC
T ss_pred             cCcCCEEECCCCCCC
Confidence             68899999998876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=9.6e-15  Score=163.05  Aligned_cols=174  Identities=20%  Similarity=0.307  Sum_probs=140.8

Q ss_pred             cEEEcCCCCCCccCcccC--CC-ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-------CCCC
Q psy10487         37 KSALCKDANFTALPSTLD--SD-IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-------YLTI  106 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~--~~-L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-------~l~~  106 (610)
                      +.++..+++++.+|..+.  .+ |++|+|++|.|+.++. .+....+.+|+.|+|++|.+....+..|.       .+.+
T Consensus       356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence            567888888888887663  35 9999999999997775 44433455899999999999888777777       7789


Q ss_pred             CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCC-------CccEEEccCccccccCHHHh-hcCcc
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP-------YLKTIELQHCQIHSVHKDAL-IHLTA  178 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~l~~  178 (610)
                      |++|+|++|+|..++...|..+++|++|+|++|.++.++...+..+.       +|+.|+|++|+|+.++...+ ..+++
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY  514 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence            99999999999998888888889999999999999988776665443       89999999999997754332 38899


Q ss_pred             ccccccccccccccCcccccCCCcccEEecCCCc
Q psy10487        179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP  212 (610)
Q Consensus       179 L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~  212 (610)
                      |+.|+|++|++++++. .+..+++|+.|++++|+
T Consensus       515 L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          515 LVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             CCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCB
T ss_pred             cCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCc
Confidence            9999999999998655 45578999999996654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.57  E-value=2.7e-15  Score=140.18  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             EeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCccee
Q psy10487        271 IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      .+.+|++++|.|.+.| |. .|.|+|+|..+....               .+.|.|.+ ++.+|+|.|+|.|.|..|...
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~   72 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------------DKHLVLQDFSEVEDSGYYVCYTPASNKNTY   72 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------------CSEEEEESCCTTTSCEEEEEECSSCCCCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------------CCEEEECCCCccccCEEEEEEEEeCCCcEE
Confidence            3467999999999988 54 499999999886532               12799999 999999999999999999877


Q ss_pred             EEEEEEcCccccccc---------------cccCCc----cee---ehhhhHHHHHHHHHhheeEEEEEEeeeccccccc
Q psy10487        350 GEISLDLPEINLATT---------------LSKTDS----WYM---LVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRK  407 (610)
Q Consensus       350 ~~~~L~V~~~~~~p~---------------~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (610)
                      ..+.+.|.....+..               +.....    ...   +..+..            +.+.|.. +.+...|.
T Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------------v~l~C~~-p~p~i~W~  139 (186)
T 1jbj_A           73 LYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS------------VLLTCGL-TDKTIKWL  139 (186)
T ss_dssp             EEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCE------------EEEECSS-SCSCEEEE
T ss_pred             EEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCe------------EEEEeeC-CCCeEEEE
Confidence            776666643222110               000000    000   001111            1223332 22333333


Q ss_pred             ccCCcccccc-ccccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        408 RKGKMKQSVS-FNDQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       408 ~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      +.+   ..+. .......|.|.+++.+|+|.|+|.|.|..|+.
T Consensus       140 k~g---~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          140 KDG---SIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ETT---EECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ECC---EECcccCCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            222   2111 11256689999999999999999999999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=9.5e-16  Score=165.48  Aligned_cols=177  Identities=20%  Similarity=0.189  Sum_probs=149.2

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-CCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-YLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~LdLs~  114 (610)
                      -..++..++.++.++.....+|+.|+|++|.|+.+.+..|.  ++++|+.|+|++|.|..+.+..|. .+++|++|+|++
T Consensus       101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            36788999999988876667899999999999999888887  689999999999999998888776 799999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc-ccC
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLS  193 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~  193 (610)
                      |.|..++.  +..+++|+.|+|++|.++.+++. |..+++|+.|+|++|.|..++ ..+..+++|+.|++++|.+. ...
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             Cccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcch
Confidence            99998854  44689999999999999998775 888999999999999999885 45788899999999999987 333


Q ss_pred             cccccCCCcccEEecC-------CCcccccCC
Q psy10487        194 ESVFFPTPNLKTLSLD-------GNPWCCDCH  218 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~-------~N~~~c~c~  218 (610)
                      +..+..++.|+.+++.       .|++.|.|.
T Consensus       255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            4456667777766664       555555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=7.2e-16  Score=157.03  Aligned_cols=169  Identities=20%  Similarity=0.185  Sum_probs=146.2

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh-cCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~LdLs~  114 (610)
                      -+.++..+++++.++.....+|++|+|++|.|+.+.+..|.  ++++|++|+|++|.+..+.+..| ..+++|++|+|++
T Consensus       101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            36788899999988877778899999999999999888887  68999999999999999887777 4789999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc-ccC
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLS  193 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~  193 (610)
                      |+|..++.  ...+++|++|+|++|.++.+++. |..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|.+. ...
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             CcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCccCcCH
Confidence            99998854  34589999999999999998775 888999999999999999885 45788899999999999998 555


Q ss_pred             cccccCCCcccEEecCC
Q psy10487        194 ESVFFPTPNLKTLSLDG  210 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~  210 (610)
                      +..+..+++|+.+++.+
T Consensus       255 ~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          255 RDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             HHHHHTCHHHHHHHHHH
T ss_pred             HHHHhccccceEEECCC
Confidence            55677777888777663

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.57  E-value=1.8e-16  Score=162.13  Aligned_cols=172  Identities=16%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             eecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+..+.+.+|+.++|.|.+.|. |.|.+.|+++|..+....+..          ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~n~   83 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL----------VGPQRLQVLNASHEDSGAYSCRQRLT   83 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEE----------eccceEEEeecccccCEEEEEEEEeC
Confidence            4778889999999999999987 689999999998876543211          12358999999999999999999999


Q ss_pred             CcceeEEEEEEcCcccc-------------------ccccccCCc----ceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487        345 RGNASGEISLDLPEINL-------------------ATTLSKTDS----WYMLVLGISVCVVSVIVSIGMSFCVCRAHEH  401 (610)
Q Consensus       345 ~G~~~~~~~L~V~~~~~-------------------~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (610)
                       |.....+.|.|.....                   +|.+.....    ...+..+..            +.+.|...+.
T Consensus        84 -~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~------------v~l~C~~~g~  150 (334)
T 1ry7_B           84 -QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANT------------VRFRCPAAGN  150 (334)
T ss_dssp             ------------------------------------CCCCSCCTTCCCCEEEEETTCC------------EEEECCCCCS
T ss_pred             -CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCc------------EEEEEEccCC
Confidence             8888888888754321                   222221111    111111111            1223332222


Q ss_pred             c--cccccccCCcc------ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        402 K--NKRRKRKGKMK------QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       402 ~--~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      +  ...|.+.+..-      ...........|.|.+++.+|+|.|+|.|.|..|..+....+.|...
T Consensus       151 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             SCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            2  22232211110      01112234558999999999999999999999999888888887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.4e-14  Score=163.57  Aligned_cols=176  Identities=17%  Similarity=0.241  Sum_probs=99.2

Q ss_pred             cEEEcCCCCCCccCcccCC----CccEEEeecCCCCCCChhh---hcccCCCCccEEEcccCCCcccchhhhcCCCCCcE
Q psy10487         37 KSALCKDANFTALPSTLDS----DIQVLDLNNNKISYLTKEA---FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE  109 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~----~L~~L~L~~n~i~~l~~~~---~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~  109 (610)
                      +.++..+++++.+|..+..    +|+.|+|++|.|....+..   +....+.+|+.|+|++|.+..++...|..+++|++
T Consensus       622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST  701 (876)
T ss_dssp             CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred             CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence            4566667777777654421    2666666666665433221   11112345666666666666665555556666666


Q ss_pred             EEccCCCCCCCCcccccCCC-------CCcEEEeeCccccccCcCcC-CCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        110 VDLSDNQIAWLHQDTFLGND-------RLKVLYLNGNPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       110 LdLs~n~l~~l~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                      |+|++|+|..++...|....       +|+.|+|++|.++.++...+ ..+++|+.|+|++|+|..+ +..+..+++|+.
T Consensus       702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~  780 (876)
T 4ecn_A          702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKA  780 (876)
T ss_dssp             EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCE
T ss_pred             EECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCE
Confidence            66666666665555444332       66666666666665543322 2566666666666666664 334555666666


Q ss_pred             ccccc------ccccccCcccccCCCcccEEecCCCcc
Q psy10487        182 LNLNG------NRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       182 L~L~~------n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      |+|++      |.+....+..+..+++|+.|++++|.+
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            66644      444444444555566666666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=2.5e-14  Score=153.75  Aligned_cols=167  Identities=23%  Similarity=0.309  Sum_probs=139.8

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.++..+++++.++. ....+|+.|+|++|.++.++  .+.  .+++|++|++++|.+..+.+  |..+++|++|++++
T Consensus       201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  274 (466)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhh--cCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence            3678888888877653 34568999999999998874  455  68899999999999988865  88899999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |++..+++  +..+++|+.|+|++|.++.+.+  +..+++|+.|+|++|++..+.+  +..+++|+.|++++|.++++. 
T Consensus       275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-  347 (466)
T 1o6v_A          275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-  347 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence            99998765  8889999999999999988766  7788999999999999988865  678899999999999998873 


Q ss_pred             ccccCCCcccEEecCCCccccc
Q psy10487        195 SVFFPTPNLKTLSLDGNPWCCD  216 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~~c~  216 (610)
                       .+..+++|+.|++++|.+...
T Consensus       348 -~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          348 -SLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             -GGTTCTTCCEEECCSSCCCBC
T ss_pred             -hhccCCCCCEEeCCCCccCcc
Confidence             577888999999999887644

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.55  E-value=1.1e-14  Score=142.83  Aligned_cols=201  Identities=16%  Similarity=0.117  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeC--CEEec-
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLN--GQVLH-  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~--g~~l~-  302 (610)
                      -+.+.|+|.+.    |.......... ..++.+...+..+.+.+|++++|.|.+.|.|     .|.|.|+|+  +..+. 
T Consensus        14 ~dsg~Y~C~a~----g~~~~~~~~~~-~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~   88 (254)
T 2c1o_A           14 GTSVKLSCKAS----GYSFTNYWMNW-LRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR   88 (254)
T ss_dssp             -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred             CccEEEEEcCc----hhhhhhhhhhe-eeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence            46788999987    22222221111 2267777778889999999999999999988     489999984  32211 


Q ss_pred             --cCCccceeeccCCceee---eeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehh
Q psy10487        303 --NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVL  376 (610)
Q Consensus       303 --~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~  376 (610)
                        ...........++....   ....|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.....+|.+.........  
T Consensus        89 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~--  166 (254)
T 2c1o_A           89 LIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ--  166 (254)
T ss_dssp             EEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH--
T ss_pred             EEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh--
Confidence              00000000000110111   12489999999999999999999987653 22345666443333443322111000  


Q ss_pred             hhHHHHHHHHHhheeEEEEEEeeec-cc---ccccccCCcc-cc------cccc-----ccccceeeeeeeeccCcceee
Q psy10487        377 GISVCVVSVIVSIGMSFCVCRAHEH-KN---KRRKRKGKMK-QS------VSFN-----DQEKKLLDVSITTTDRHTGSC  440 (610)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~-~~------~~~~-----~~~~~L~i~~v~~~D~G~Y~C  440 (610)
                               +.+. .+...|...+. +.   ..|.+.+..- ..      ....     .....|.|.++..+|+|.|+|
T Consensus       167 ---------~~g~-~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C  236 (254)
T 2c1o_A          167 ---------LTSG-GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC  236 (254)
T ss_dssp             ---------HHTT-EEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEE
T ss_pred             ---------ccCC-cEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEE
Confidence                     0111 12344444332 21   2343332210 00      0000     013468999999999999999


Q ss_pred             eecCCCcc
Q psy10487        441 EALGSQPD  448 (610)
Q Consensus       441 ~A~N~~G~  448 (610)
                      .|.|....
T Consensus       237 ~a~n~~~~  244 (254)
T 2c1o_A          237 EATHKTST  244 (254)
T ss_dssp             EEECTTCS
T ss_pred             EEEcCCCC
Confidence            99998765

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.55  E-value=2.4e-14  Score=137.12  Aligned_cols=179  Identities=14%  Similarity=0.147  Sum_probs=103.1

Q ss_pred             eecceEeecCceEEEEEEEEecCC-----CeEEEEeCCEEeccCCccceee----c--cCCcee------eeeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE-----PTILWLLNGQVLHNSSFDLLEE----E--EGDALF------EKSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~-----p~v~W~~~g~~l~~~~~~~~~~----~--~~~~~~------~~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|.     +.+.|++++..+..........    .  .++...      .....|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345667889999999999988884     4899999875442211100000    0  011000      1235899999


Q ss_pred             cCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccc
Q psy10487        329 VTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRR  406 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  406 (610)
                      ++.+|+|.|+|.|.| .|.....+.|.|......+....   ......+.            .+.+.|...+.  +...|
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~---~~~~~~g~------------~v~L~C~~~g~P~p~i~W  150 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRI---LVVDPVTS------------EHELTCQAEGYPKAEVIW  150 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEE---EEEETTTT------------EEEEEEEEEEBSCCEEEE
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCcee---eeeecCCC------------cEEEEEEecCCCCCeEEE
Confidence            999999999999999 67777788888853322211110   00111111            11334443333  33334


Q ss_pred             ccc-CCcccc---c-cccccccceee---eeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        407 KRK-GKMKQS---V-SFNDQEKKLLD---VSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       407 ~~~-~~~~~~---~-~~~~~~~~L~i---~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      .+. +..-..   . .....++.+.+   ..+..+|.|.|+|.|.|..|..+..+.+.+.+.
T Consensus       151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          151 TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence            332 111000   0 11122232332   356678999999999999999999999888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=4.3e-14  Score=151.89  Aligned_cols=164  Identities=24%  Similarity=0.368  Sum_probs=116.5

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.+++.+.+++.+|. ....+|++|+|++|.|+.+++  +.  ++.+|++|++++|.+..+.+  |..+++|++|+|++
T Consensus        48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             ccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            4678899999988884 234689999999999999876  65  78999999999999998876  89999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCC---------------------ccEEEccCccccccCHHHh
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY---------------------LKTIELQHCQIHSVHKDAL  173 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~---------------------L~~L~L~~n~l~~~~~~~~  173 (610)
                      |++..+++  |..+++|++|+|++|.+..+..  +..+++                     |+.|++++|.+..+.  .+
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l  195 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VL  195 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GG
T ss_pred             CCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hh
Confidence            99998865  8899999999999998887643  444444                     444555555444442  23


Q ss_pred             hcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       174 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      ..+++|+.|++++|.+..+.+  +..+++|+.|++++|.+
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence            444455555555554444433  33344445555544443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=1.4e-14  Score=159.85  Aligned_cols=148  Identities=24%  Similarity=0.341  Sum_probs=134.2

Q ss_pred             CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      ..+|+.|+|++|.|..++  .|.  .+++|+.|+|++|.|..+.+  |..+++|+.|+|++|+|..++  .|..+++|+.
T Consensus        42 L~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT--TGG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred             CCCCCEEECcCCCCCCCh--HHc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence            458999999999999986  355  68999999999999999876  899999999999999999876  5899999999


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      |+|++|.+..+.  .+..+++|+.|+|++|+|..+  ..+..+++|+.|+|++|.|..+.+  +..+++|+.|+|++|.+
T Consensus       114 L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            999999999874  488899999999999999988  568899999999999999998877  78899999999999987


Q ss_pred             cc
Q psy10487        214 CC  215 (610)
Q Consensus       214 ~c  215 (610)
                      ..
T Consensus       188 ~~  189 (605)
T 1m9s_A          188 SD  189 (605)
T ss_dssp             CB
T ss_pred             CC
Confidence            64

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.55  E-value=4.8e-15  Score=155.14  Aligned_cols=183  Identities=15%  Similarity=0.186  Sum_probs=112.5

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      ..+|.+...+..+.+.+|+.++|.|.+.| .|.+.+.|+|+|..+.......... .      ..+.|.|.+++.+|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-~------~~~~L~i~~~~~~D~G~   76 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-K------DEGSLVFLRPQASDEGH   76 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-T------TSCCEEESSCCGGGCEE
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEe-c------CCceEEEecCCCCCCcE
Confidence            35788888899999999999999999999 8999999999998887654311111 1      22489999999999999


Q ss_pred             EEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeec-ccccccccCCcc
Q psy10487        337 YTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEH-KNKRRKRKGKMK  413 (610)
Q Consensus       337 Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~  413 (610)
                      |+|.|.|..|... ..+.|.|..... |.+.  +....+..+..+.+.|.+ .+.+...+.|.+... .... ...... 
T Consensus        77 Y~C~a~n~~g~~~s~~~~l~v~~~~~-p~~~--~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-  151 (395)
T 1bih_A           77 YQCFAETPAGVASSRVISFRKTYLIA-SPAK--THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN-ADVTDF-  151 (395)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEEEEC-CCCE--EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG-GCCCCC-
T ss_pred             EEEEEEeCCCeEEeEEEEEEEEEeec-CCcC--CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc-cccccc-
Confidence            9999999999764 345555532221 2221  111111122111111211 111222233333221 0000 000000 


Q ss_pred             ccccccccccceeeeeeeeccCc---ceeeeecCCCcceeee
Q psy10487        414 QSVSFNDQEKKLLDVSITTTDRH---TGSCEALGSQPDMELI  452 (610)
Q Consensus       414 ~~~~~~~~~~~L~i~~v~~~D~G---~Y~C~A~N~~G~~~~~  452 (610)
                      ........++.|.|.+++.+|+|   .|+|.|.|..|..+..
T Consensus       152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~  193 (395)
T 1bih_A          152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV  193 (395)
T ss_dssp             CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred             cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEE
Confidence            11112234568999999999999   9999999999986544

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.54  E-value=1.3e-14  Score=147.29  Aligned_cols=194  Identities=12%  Similarity=0.042  Sum_probs=107.0

Q ss_pred             CCCCCCCCCCCCccC----CCcccccccc--cccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQ----TKHWDDVKAQ--EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~----g~~~~~v~~~--~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|+|.+.+...    ......+...  ...-+|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+...
T Consensus        84 ~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~  161 (316)
T 3vh8_G           84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS  161 (316)
T ss_dssp             GGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE
T ss_pred             ccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc
Confidence            467889997653221    1111112211  112346666555544 88999999999995 467789999998776432


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhH
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGIS  379 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~  379 (610)
                      ....... ..    ...+.|.|.+++.+|+|.|+|.|.|..|..     +..+.|.|.+...+|.+...+......+ ..
T Consensus       162 ~~~~~~~-~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G-~~  235 (316)
T 3vh8_G          162 RLVGQIH-DG----VSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAG-ES  235 (316)
T ss_dssp             EEECEEE-TT----EEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTT-SC
T ss_pred             eeeeeec-CC----CceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCC-Cc
Confidence            2111110 00    234689999999999999999999998842     5566777755444454444333222211 11


Q ss_pred             HHHHHHHHhheeEEEEEEeeecccccccccCCcccccc---------ccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        380 VCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      +            .+.|.... +. ....|.+.+..+.         .......|.|.+++  |+|.|+|.|.|..+.
T Consensus       236 v------------~L~C~~~~-~~-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          236 V------------TLSCSSRS-SY-DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             C------------EEEEEESS-CC-SEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             E------------EEEEECCC-CC-cEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            1            22232221 11 0111111111110         11223679999999  999999999998775

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.54  E-value=1.6e-15  Score=150.01  Aligned_cols=192  Identities=14%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             CceeeeecceEeecCceEEEEEEEE---ecCCCeEEEEeCCEEeccCCc----------------cceeeccCCceeeee
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQVLHNSSF----------------DLLEEEEGDALFEKS  321 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~---g~P~p~v~W~~~g~~l~~~~~----------------~~~~~~~~~~~~~~~  321 (610)
                      +.+...+..+.+.+|++++|.|.+.   +.|.+.|.|++++........                ........  .....
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~   83 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD--TFHND   83 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSC--TTTTB
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeec--CCCCE
Confidence            4556667788999999999999998   788899999996542211100                00000000  00122


Q ss_pred             eEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH---HhheeEEEEE
Q psy10487        322 VSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI---VSIGMSFCVC  396 (610)
Q Consensus       322 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  396 (610)
                      +.|.|.+++.+|+|.|+|.|.|..+..  ...+.|.|.  ...|      ....+..+..+.+.|.+   .+.+...+.|
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~~p------~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W  155 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PEEP------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNW  155 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CCCC------SEEEEETTCCEEECCBCEESSSSCCCEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--ccCC------CccccccCCcEEEEEEecCCCCCCccceEE
Confidence            689999999999999999999986654  445666652  1111      11222222222222222   1222223334


Q ss_pred             Eeeecccccc---------------cccCCcccccc----ccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        397 RAHEHKNKRR---------------KRKGKMKQSVS----FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       397 ~~~~~~~~~~---------------~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+........               .........+.    ....+..|.|.+++.+|+|.|+|.|.|..|..+....|.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          156 MFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence            3322110000               00000000111    1234668999999999999999999999999999999888


Q ss_pred             ccCCC
Q psy10487        458 MEQPP  462 (610)
Q Consensus       458 ~~~pp  462 (610)
                      ...||
T Consensus       236 ~~~~p  240 (268)
T 3mj6_A          236 VQDEF  240 (268)
T ss_dssp             ECC--
T ss_pred             EcCCC
Confidence            65443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.54  E-value=1.7e-15  Score=144.28  Aligned_cols=178  Identities=11%  Similarity=0.043  Sum_probs=103.7

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCce---eeeeeEEEEEecCCCC
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNVTDLD  333 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D  333 (610)
                      .+...+ .+.+.+|++++|.|.+.|.|.+.+.|+|.  +....   ...........++..   ....+.|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            444555 78899999999999999999999999982  22111   000000000000000   0123589999999999


Q ss_pred             CeEEEEEeecCCc---ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--c--ccc
Q psy10487        334 AGEYTCYAENIRG---NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--K--NKR  405 (610)
Q Consensus       334 ~G~Y~C~a~N~~G---~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~  405 (610)
                      +|.|+|.|.|..|   .....+.|.|.... .+|.+...+......           .+ ..+.+.|...+.  +  ...
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~-----------~g-~~v~l~C~~~g~~p~~~~v~  149 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEEL-----------KT-NQATLVCMINGFYPADVAVT  149 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHH-----------TT-TEEEEEEEEEEEBSSCCEEE
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccc-----------cC-CcEEEEEEeeceeCCCeEEE
Confidence            9999999999998   44556777774322 333333222111111           11 112334443332  1  223


Q ss_pred             ccccCCccccccc-------------cccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        406 RKRKGKMKQSVSF-------------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       406 ~~~~~~~~~~~~~-------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      |.+   .+..+..             ......|.|..+..+|+|.|+|.|.|..|..+..+.+
T Consensus       150 W~k---~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          150 WEA---DGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             EEE---TTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             EEc---CCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            332   2221110             0112358888888999999999999999887766543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.54  E-value=2.1e-15  Score=157.34  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+..+......+.... ...|.+.. ......+.+|+.++|.|.+ .+.|.+.+.|++++..+.......
T Consensus        72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~  150 (382)
T 1cs6_A           72 KDAGSYQCVATNARGTVVSREASLRF-GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR  150 (382)
T ss_dssp             HHCEEEEEEEEETTEEEECCCEEEEE-EEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSS
T ss_pred             ccCEEEEEEEEcCCcEEEecceEEEe-eccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCce
Confidence            46788999987654422111121111 12222222 2456788999999999996 578999999999987643221111


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-----EEEEEcCc---ccccccccc-CCcceeehhhhH
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-----EISLDLPE---INLATTLSK-TDSWYMLVLGIS  379 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-----~~~L~V~~---~~~~p~~~~-~~~~~~~~~~~~  379 (610)
                      .....      ..+.|.|.+++.+|+|.|+|.|.|..|....     .+.|.|..   ...+|.+.. .+....+..+..
T Consensus       151 ~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~  224 (382)
T 1cs6_A          151 RFVSQ------TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM  224 (382)
T ss_dssp             EEECT------TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred             EEEec------CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence            11111      1248999999999999999999998864332     23444321   111222222 122222222221


Q ss_pred             HHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        380 VCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      +.          +.|.....+.+...|.+....-. .........|.|.+++.+|+|.|+|.|.|..|..+....+.|..
T Consensus       225 v~----------l~C~~~g~p~~~i~W~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  293 (382)
T 1cs6_A          225 VT----------LECFAFGNPVPQIKWRKLDGSQT-SKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA  293 (382)
T ss_dssp             EE----------EECEEEEESCCEEEEEECCSCCS-CCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EE----------EEEEEccCCCCEEEEEECCcccc-cEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence            11          12222222222333332221111 12234566899999999999999999999999988888888775


Q ss_pred             CC
Q psy10487        460 QP  461 (610)
Q Consensus       460 ~p  461 (610)
                      +|
T Consensus       294 ~p  295 (382)
T 1cs6_A          294 QP  295 (382)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=2.5e-14  Score=141.38  Aligned_cols=146  Identities=17%  Similarity=0.289  Sum_probs=129.1

Q ss_pred             CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      -+.+++.+++++++| .+  ..+|+.|+|++|.|+.+++  |.  ++++|++|+|++|.+..++..  .. .+|++|+|+
T Consensus        43 L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~  114 (263)
T 1xeu_A           43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD  114 (263)
T ss_dssp             CSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC
T ss_pred             CcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc
Confidence            468999999999998 44  4689999999999999987  66  799999999999999998753  33 899999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                      +|+|+.++  .|..+++|+.|+|++|.++.+.  .+..+++|+.|+|++|+|..+  ..+..+++|+.|++++|.+...+
T Consensus       115 ~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          115 NNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            99999984  4899999999999999999985  588899999999999999988  56888999999999999998775


Q ss_pred             cc
Q psy10487        194 ES  195 (610)
Q Consensus       194 ~~  195 (610)
                      ..
T Consensus       189 ~~  190 (263)
T 1xeu_A          189 VK  190 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.54  E-value=3.9e-15  Score=155.53  Aligned_cols=175  Identities=15%  Similarity=0.164  Sum_probs=106.6

Q ss_pred             CCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC----
Q psy10487        260 PPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD----  333 (610)
Q Consensus       260 ~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D----  333 (610)
                      +|.|...|.. +.+.+|+.++|.|.+.|.|.|+|.|++ +|..+..........        ..+.|.|.+++.+|    
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~~~~   74 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--------SDGKLVFPPFRAEDYRQE   74 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--------STTEEEECCCCGGGCCHH
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--------CCceEEecccChhhcccc
Confidence            4677777654 557899999999999999999999999 787765433222211        23489999999987    


Q ss_pred             --CeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh---eeEEEEEEeeeccccccc
Q psy10487        334 --AGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI---GMSFCVCRAHEHKNKRRK  407 (610)
Q Consensus       334 --~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  407 (610)
                        +|.|+|.|.|..|.. +..+.|.|..   +|.+........+..+..+.+.|.+.+.   ....+.|.+....... .
T Consensus        75 ~d~G~Y~C~a~n~~g~~~s~~~~v~v~~---~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~-~  150 (388)
T 2v5m_A           75 VHAQVYACLARNQFGSIISRDVHVRAVV---AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF-P  150 (388)
T ss_dssp             HHEEEEEEEEEETTEEEECCCEEEEEEC---CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEEC-S
T ss_pred             ccCceEEEEEEccCCeEEecceEEEEcc---ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccc-c
Confidence              999999999999975 4456666532   2223222222233222222222222221   1123333332221110 0


Q ss_pred             ccCCccccccccccccceeeeeeeeccC-cceeeeecCCCcc
Q psy10487        408 RKGKMKQSVSFNDQEKKLLDVSITTTDR-HTGSCEALGSQPD  448 (610)
Q Consensus       408 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~~G~  448 (610)
                       ....... .....++.|.|.+++.+|+ |.|+|.|.|..|.
T Consensus       151 -~~~~~~~-~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~  190 (388)
T 2v5m_A          151 -GAEYDGK-YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG  190 (388)
T ss_dssp             -SSCBTTT-EEECTTSCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred             -ccCCCCc-EEEccCCcEEEecCCccccCeeEEEEeccCCCC
Confidence             0000111 1123456899999999999 9999999998643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=3.9e-14  Score=161.76  Aligned_cols=173  Identities=17%  Similarity=0.266  Sum_probs=139.9

Q ss_pred             cEEEcCCCCCCccCcccC--CC-ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchh---hhc--CCCCCc
Q psy10487         37 KSALCKDANFTALPSTLD--SD-IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD---TFK--YLTILV  108 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~--~~-L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~---~f~--~l~~L~  108 (610)
                      +.++..+++++.+|..+.  .+ |+.|+|++|.|+.++ ..+......+|+.|+|++|.+....+.   .+.  .+.+|+
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            578889999999997664  35 999999999999877 444433445699999999998765432   122  345899


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCC-------CCccEEEccCccccccCHHHhh--cCccc
Q psy10487        109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL-------PYLKTIELQHCQIHSVHKDALI--HLTAL  179 (610)
Q Consensus       109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L  179 (610)
                      +|+|++|+|..++...|..+++|+.|+|++|.++.++...+..+       ++|+.|+|++|+|+.++ ..+.  .+++|
T Consensus       677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L  755 (876)
T 4ecn_A          677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYL  755 (876)
T ss_dssp             EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTC
T ss_pred             EEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCc
Confidence            99999999999988888889999999999999998877666543       38999999999999875 4454  88999


Q ss_pred             cccccccccccccCcccccCCCcccEEecCCCc
Q psy10487        180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP  212 (610)
Q Consensus       180 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~  212 (610)
                      +.|+|++|++++++. .+..+++|+.|++++|+
T Consensus       756 ~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          756 SNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             CEEECCSSCCSSCCC-GGGGCTTCCEEECCCCB
T ss_pred             CEEEeCCCCCCccch-hhhcCCCCCEEECCCCC
Confidence            999999999999755 45688999999998865

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=3.1e-14  Score=121.43  Aligned_cols=100  Identities=19%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..+|.|...+..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+....+.......      ..+.|.|.+++.+|+|.|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y   78 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE------NGSKLTILAARQEHCGCY   78 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS------SEEEEEETTCCTTTCEEE
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcC------CEEEEEECCCChhcCEEE
Confidence            35788888888999999999999999999999999999999888765432222111      145899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCcccccc
Q psy10487        338 TCYAENIRGNASGEISLDLPEINLAT  363 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~~p  363 (610)
                      +|.|.|..|.....+.|.|.+.+.+|
T Consensus        79 ~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           79 TLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEEEECCCcEEEEEEEEEECCCCCC
Confidence            99999999999999999986544433

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.54  E-value=9.4e-15  Score=138.72  Aligned_cols=178  Identities=12%  Similarity=0.085  Sum_probs=100.4

Q ss_pred             eecceEeecCceEEEEEEEEecCCCe---EEEEeCCEEeccCCc------cc-eeecc--------CCceeeeeeEEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPT---ILWLLNGQVLHNSSF------DL-LEEEE--------GDALFEKSVSITLF  327 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~---v~W~~~g~~l~~~~~------~~-~~~~~--------~~~~~~~~~~L~I~  327 (610)
                      .+..+.+.+|++++|.|.+.|.|.+.   |.|+|++..+.....      .. .....        ........++|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            35667889999999999999988764   899997654332110      00 00000        00001123579999


Q ss_pred             ecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccc
Q psy10487        328 NVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNK  404 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  404 (610)
                      +++.+|+|.|.|.+.|..+.... ...+.+.... . .............+.            .+.+.|.....  +..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~------------~~~~~c~~~g~p~p~i  150 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP-L-PSLNPGPALEEGQGL------------TLAASCTAEGSPAPSV  150 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC-C-CEEEECSCEETTCCS------------EEEEEEEEEEBSCCEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeec-c-ceeeeeeeeeeeecc------------ccceeeeccCCcCceE
Confidence            99999999999999987765433 3444332111 1 111111111111111            11233333333  333


Q ss_pred             cccccCCcccc---cc---ccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        405 RRKRKGKMKQS---VS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       405 ~~~~~~~~~~~---~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .|.+....-..   ..   .......|.|..+..+|.|.|+|.|.|.+|..+....+.+
T Consensus       151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            34332211110   00   0112346999999999999999999999998877665543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.54  E-value=1.6e-14  Score=154.17  Aligned_cols=207  Identities=14%  Similarity=0.157  Sum_probs=124.2

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCcee-eeecceEeecCceEEEEEEEEecCCC---eEEEEeCCEEeccCCcc
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVT-IKESMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVLHNSSFD  307 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~-~~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l~~~~~~  307 (610)
                      +.+ |+|.+. ...+.....+...... +|.+. ..+....+.+|+.++|.|.+.|.|+|   .|.|+|++..+......
T Consensus        60 d~g-Y~C~a~-~~~~~~~~~~~l~V~~-~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~  136 (450)
T 1z7z_I           60 DSQ-PMCYSN-CPDGQSTAKTFLTVYW-TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV  136 (450)
T ss_dssp             CBC-CEEEEE-ETTEEEEEECEEEEEB-CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC
T ss_pred             CCe-eEEEEe-CCCCcceeEEEEEEEe-CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc
Confidence            566 999884 3333232333333333 55554 55677889999999999999999988   99999999988654321


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee--------EEEEEEcCcc-ccccccccCCcceeehhhh
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS--------GEISLDLPEI-NLATTLSKTDSWYMLVLGI  378 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--------~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~  378 (610)
                      .    .     ...+.|.|.+++.+|+|.|+|.|.|..|...        ....+.|... ..+|.+...   ..+..+.
T Consensus       137 ~----~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---~~v~~G~  204 (450)
T 1z7z_I          137 G----E-----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---RVLEVDT  204 (450)
T ss_dssp             T----T-----TEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---SEEETTS
T ss_pred             c----c-----ccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---eeEEeCC
Confidence            1    1     2235899999999999999999999988543        2334444322 112222111   1111111


Q ss_pred             HHHHHHHHHhheeEEEEEEeeec-c----cccccccCCccccccccccccceee---eeeeeccCc--ceeeeecCCCcc
Q psy10487        379 SVCVVSVIVSIGMSFCVCRAHEH-K----NKRRKRKGKMKQSVSFNDQEKKLLD---VSITTTDRH--TGSCEALGSQPD  448 (610)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~L~i---~~v~~~D~G--~Y~C~A~N~~G~  448 (610)
                                  .+.+.|...+. +    ...|.+.+..-.. ........+.+   .+++.+|+|  .|+|.|.|..|.
T Consensus       205 ------------~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~  271 (450)
T 1z7z_I          205 ------------QGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS  271 (450)
T ss_dssp             ------------EEEEEEEEESCTTGGGCEEEEEETTEECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE
T ss_pred             ------------cEEEEEEeeCCCCCCceEEEEeCCCEeCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc
Confidence                        12334544433 2    2222222211111 11111112222   266889999  999999999999


Q ss_pred             eeeeeecccccCCCccee
Q psy10487        449 MELIEQSLAMEQPPVHIT  466 (610)
Q Consensus       449 ~~~~~~l~v~~~pp~~i~  466 (610)
                      .+..+.+.|...|+..++
T Consensus       272 ~~~~~~l~V~~~~~p~i~  289 (450)
T 1z7z_I          272 QETLQTVTIYSFPAPNVI  289 (450)
T ss_dssp             EEEEEEEEEECCCCCEEE
T ss_pred             EEEEEEEEEecCCCCeEe
Confidence            999999988875554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=9.5e-14  Score=148.51  Aligned_cols=156  Identities=20%  Similarity=0.234  Sum_probs=94.4

Q ss_pred             CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      -+.+++.+++++.+| .+  ..+|++|+|++|.|+.++   +.  .+++|++|+|++|.+..++   |+.+++|++|+|+
T Consensus        44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            366778777777776 33  357888888888887764   44  5677788888777777763   6777777777777


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCc-cccccCHHHhhcCcccccccccccccccc
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +|++..++   |..+++|++|+|++|.++.+.   +..+++|+.|++++| .+..+   .+..+++|+.|++++|+++.+
T Consensus       115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence            77777763   667777777777777776652   444445555555544 22222   133344444444444444443


Q ss_pred             CcccccCCCcccEEecCCCc
Q psy10487        193 SESVFFPTPNLKTLSLDGNP  212 (610)
Q Consensus       193 ~~~~~~~~~~L~~l~l~~N~  212 (610)
                      +   +..+++|+.|++++|.
T Consensus       186 ~---l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          186 D---VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             C---CTTCTTCCEEECCSSC
T ss_pred             c---cccCCCCCEEECcCCc
Confidence            2   2333344444444443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.53  E-value=1.9e-14  Score=137.00  Aligned_cols=175  Identities=16%  Similarity=0.148  Sum_probs=100.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~  334 (610)
                      +...+..+.+.+|++++|.|.+.|.|.|.|.|+|++  ..+.   ...........++....   ....|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            444577888999999999999999999999999843  2110   00000000000110111   124899999999999


Q ss_pred             eEEEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc---ccccccc
Q psy10487        335 GEYTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK---NKRRKRK  409 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~  409 (610)
                      |.|+|.|.|..|... ..+.|.|.....+|.+.........           ..+. .+.+.|...+ .+   ...|.+.
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~-----------~~g~-~~~l~C~~~g~~p~~~~v~W~k~  151 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVKWKID  151 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhh-----------cCCC-cEEEEEEEeeecCCceEEEEEcC
Confidence            999999999988643 3456777543334443321111100           0111 2234454433 22   2234332


Q ss_pred             CCccc-c------ccccc-----cccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        410 GKMKQ-S------VSFND-----QEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       410 ~~~~~-~------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      +..-. .      .....     ....|.|.++..+|+|.|+|.|.|.....
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          152 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            21100 0      00001     12379999999999999999999987664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=1.2e-14  Score=133.36  Aligned_cols=133  Identities=21%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             CCCCccEEEcccCCCc--ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc
Q psy10487         79 GLLNLQRIYLKNSGIR--EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK  156 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~--~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  156 (610)
                      ...+|+.|+|++|.+.  .+ +..|..+++|++|+|++|+|..+  ..|..+++|++|+|++|.++...+..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3578999999999998  55 45589999999999999999988  6789999999999999999996666666799999


Q ss_pred             EEEccCccccccCH-HHhhcCccccccccccccccccCc---ccccCCCcccEEecCCCccc
Q psy10487        157 TIELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSE---SVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       157 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .|+|++|+|+.+.. ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++.+|...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999853 678899999999999999999887   67889999999999988753

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.53  E-value=4.5e-15  Score=151.79  Aligned_cols=175  Identities=10%  Similarity=0.058  Sum_probs=103.6

Q ss_pred             eecceEeecCceEEEEEEEEec---------CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-
Q psy10487        266 KESMVIREAGGNVTMSCYVYGD---------PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-  335 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~---------P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-  335 (610)
                      ....+.+.+|+.++|.|.+.|.         |.+.|.|+|++..+....+.           ...+.|.|.+++.+|+| 
T Consensus        35 ~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-----------~~~~~L~i~~v~~~D~Gs  103 (329)
T 3oq3_B           35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-----------VKNGDLWIANYTSNDSHR  103 (329)
T ss_dssp             EEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-----------EETTEEEESSCCGGGGGC
T ss_pred             CcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-----------eecceEEEcCCChHhCCC
Confidence            3466778999999999999884         66899999999776543221           12348999999999999 


Q ss_pred             EEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe-eEEEEEEeeecccccccccCCccc
Q psy10487        336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG-MSFCVCRAHEHKNKRRKRKGKMKQ  414 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  414 (610)
                      .|+|.|.|..|.......+.|..  .+|.+...........+..+.+.|.+.+.+ ...+.|.+.+...        ...
T Consensus       104 ~Y~C~a~n~~g~~~~~~~~~v~~--~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l--------~~~  173 (329)
T 3oq3_B          104 RYLCTVTTKNGDCVQGIVRSHIR--KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IID  173 (329)
T ss_dssp             CEEEEEECTTSCEEEEEEEEEEC--CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEEC--------CCS
T ss_pred             cEEEEEEeCCCceeeEEEEEEEc--CCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccC--------CCC
Confidence            99999999998765544333321  122221111111111111111112222222 1222222211110        001


Q ss_pred             cccccccccceeeeeeeeccCcceeeeecCC--Ccceeee----eecccccCC
Q psy10487        415 SVSFNDQEKKLLDVSITTTDRHTGSCEALGS--QPDMELI----EQSLAMEQP  461 (610)
Q Consensus       415 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~--~G~~~~~----~~l~v~~~p  461 (610)
                      ...+...++.|.|.+++.+|+|.|+|.|.|.  .|.....    ..|.|.+.|
T Consensus       174 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             SSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             CceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            1112223578999999999999999999997  7655544    556565443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.52  E-value=3.1e-14  Score=144.56  Aligned_cols=165  Identities=13%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      -+|.+...+. ..+.+|++++|.|.+.|. .+.+.|+|+|..+.....  ..        ...+.|.|.+++.+|+|.|+
T Consensus        23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~--~~--------~~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH--GR--------IFQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             -CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH--HC--------CBSSCEEECSCCGGGCEEEE
T ss_pred             CCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec--CC--------cceEEEEECCCCcccCeEEE
Confidence            4677777777 578899999999999988 789999999976543210  00        12348999999999999999


Q ss_pred             EEeecCC-----cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-ccccccCCc
Q psy10487        339 CYAENIR-----GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-KRRKRKGKM  412 (610)
Q Consensus       339 C~a~N~~-----G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  412 (610)
                      |.|.|..     +..+..+.|.|......|.+...+......+ ..            +.+.|.....+. ..|.+.+..
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G-~~------------v~L~C~~~~~~~~~~w~k~g~~  157 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSG-ER------------VILQCWSDIMFEHFFLHKEGIS  157 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETT-CC------------EEEEEEESSCCSEEEEEETTCC
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCC-Ce------------EEEEEcCCCCCcEEEEEECCCc
Confidence            9998743     2345567777755444455544433332222 11            122333321111 112111111


Q ss_pred             cc------cccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        413 KQ------SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       413 ~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ..      ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          158 KDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             SCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             cccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            10      0111234568999999999999999999999885

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1.2e-14  Score=130.53  Aligned_cols=127  Identities=24%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             CCCccEEEeecCCCC--CCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCC
Q psy10487         54 DSDIQVLDLNNNKIS--YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL  131 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~--~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L  131 (610)
                      +.+++.|++++|.|+  .++. .+.  .+++|+.|++++|.+..+  ..|..+++|++|+|++|++....+..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            456778888888776  4443 444  577778888877777777  557777777888887777777555666667777


Q ss_pred             cEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCH---HHhhcCccccccccc
Q psy10487        132 KVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLNLN  185 (610)
Q Consensus       132 ~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  185 (610)
                      ++|+|++|.++.+. ...+..+++|+.|++++|+++.+.+   ..+..+++|+.|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777777653 2456677777777777777777655   456667777777664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.52  E-value=7.9e-15  Score=136.35  Aligned_cols=167  Identities=15%  Similarity=0.151  Sum_probs=104.2

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC-Cccceeec----cCCcee------eeeeEEEEEecCCCCCeEE
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-SFDLLEEE----EGDALF------EKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~-~~~~~~~~----~~~~~~------~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+.+.+|++++|.|.+.+.|.+.+.|++++..+... ........    ..+...      .....|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            457889999999999999999999999988632111 00000000    000000      0123699999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccc
Q psy10487        338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS  417 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (610)
                      +|.|.|..|    .+.|.|.....+      +......+ ..            +.+.|.....+.. ...|.+.+... 
T Consensus        84 ~C~~~~~~~----~~~l~V~~~~~~------~~~~v~~g-~~------------~~l~C~~~~~p~~-~v~W~~~~~~~-  138 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGLTAN------SDTHLLQG-QS------------LTLTLESPPGSSP-SVQCRSPRGKN-  138 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEEEES------SCSEEETT-CC------------EEEEEECCTTCCC-EEEEECTTSCE-
T ss_pred             EEEEEcCCC----cEEEEEEEecCC------CCceeecC-CC------------EEEEEEcCCCCCC-EEEEEeCCCcc-
Confidence            999999865    444555321111      11111111 11            1334444333322 12333333222 


Q ss_pred             ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                       ......|.|.+++.+|+|.|+|.|.|..|..+..+.+.|...|
T Consensus       139 -~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          139 -IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             -EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             -ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence             3456789999999999999999999999999998888887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.52  E-value=1.1e-13  Score=148.05  Aligned_cols=158  Identities=19%  Similarity=0.262  Sum_probs=103.3

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      -+.++..+++++.+|..-..+|++|+|++|.|+.++   +.  ++++|++|++++|.+..++   |+.+++|++|++++|
T Consensus        66 L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           66 LTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS
T ss_pred             CCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC
Confidence            367888888888887555568999999999998874   54  6888999999999888874   788888888888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCc-cccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      +++.++   +..+++|++|++++| .+..+   .+..+++|+.|++++|+++.++   +..+++|+.|++++|.++.++ 
T Consensus       138 ~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~-  207 (457)
T 3bz5_A          138 TLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD-  207 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC-
T ss_pred             ccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec-
Confidence            888763   555666666666666 23222   2444555555555555555542   344445555555555544441 


Q ss_pred             ccccCCCcccEEecCCCcc
Q psy10487        195 SVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~  213 (610)
                        +..+++|+.|++++|.+
T Consensus       208 --l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          208 --LNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             --CTTCTTCSEEECCSSCC
T ss_pred             --cccCCCCCEEECcCCcc
Confidence              33444444444444444

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.52  E-value=2.4e-14  Score=139.64  Aligned_cols=163  Identities=16%  Similarity=0.093  Sum_probs=103.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+......  ...     ....+.|.|.+++.+|+|.|+|
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~--~~~-----~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK--PPE-----RINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS--SCT-----TCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc--ccC-----CcceeEEEecCCCcccCeEEEE
Confidence            5778777776 8899999999999875 45789999999876521110  000     0234589999999999999999


Q ss_pred             EeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc-
Q psy10487        340 YAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV-  416 (610)
Q Consensus       340 ~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  416 (610)
                      .+.|..|.  .+..+.|.|.+....|.+...+......+. .            +...|.......  ...|.+++..+ 
T Consensus        78 ~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~-~------------vtL~C~~~~~~~--~~~w~k~g~~~~  142 (242)
T 1p6f_A           78 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE-K------------VTFYCRLDTATS--MFLLLKEGRSSH  142 (242)
T ss_dssp             EEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTC-E------------EEEEEECTTSCS--EEEEEECSSSCE
T ss_pred             EEecCCccccCCcceEEEeecccCCCceEccCCCccCCCC-c------------EEEEEecCCCCC--EEEEEECCCccC
Confidence            99987653  355677777554444554433332222221 1            122333222111  11222222211 


Q ss_pred             ---cccccccceeeeeeeeccCcceeeeecCCC
Q psy10487        417 ---SFNDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       417 ---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                         ........|.|.+|+.+|+|.|+|.|.|..
T Consensus       143 ~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          143 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             EEEEECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             ccccCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence               122455689999999999999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.6e-14  Score=133.66  Aligned_cols=131  Identities=20%  Similarity=0.247  Sum_probs=81.4

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .+++.|+|++|.|+.++. ...  ..++|++|+|++|.|..+  ..|..+++|++|+|++|+|..+++..|..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            466777777777776632 221  123677777777777666  356667777777777777776665555666677777


Q ss_pred             EeeCccccccCc-CcCCCCCCccEEEccCccccccCHH---HhhcCcccccccccccccc
Q psy10487        135 YLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKD---ALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       135 ~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~  190 (610)
                      +|++|.++.++. ..+..+++|+.|++++|.+..++..   .+..+++|+.|+++.|.+.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777776666543 2455666666666666666655432   3555666666666666544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.52  E-value=4.3e-14  Score=150.90  Aligned_cols=227  Identities=15%  Similarity=0.120  Sum_probs=128.1

Q ss_pred             cCCCCCCCCCCCCccCCCcc-------c--ccccccc-cCCCceeeeecceEeecCceEEEEEEEEec-C--CCeEEEEe
Q psy10487        230 KLYSHPLSCTEPGMLQTKHW-------D--DVKAQEF-ACPPNVTIKESMVIREAGGNVTMSCYVYGD-P--EPTILWLL  296 (610)
Q Consensus       230 ~l~~~~~~C~a~~~l~g~~~-------~--~v~~~~~-~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P--~p~v~W~~  296 (610)
                      ..+.+.|+|.+.+..+....       .  .+....+ ..+|.+..   ...+.+|+.++|.|.+.|. |  .+.+.|++
T Consensus       151 ~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~  227 (450)
T 1z7z_I          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (450)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEE
T ss_pred             cccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeC
Confidence            34688999998876542211       0  0111111 11233222   2678899999999999999 7  79999999


Q ss_pred             CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe--EEEEEeecCCcceeEEEEEEcCccccccccccCCcceee
Q psy10487        297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG--EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML  374 (610)
Q Consensus       297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~  374 (610)
                      ++..+...    ......    .....+.+ +++.+|+|  .|+|.|.|..|.....+.|.|...+. |.+..... ...
T Consensus       228 ~~~~~~~~----~~~~~~----~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~-p~i~~~~~-~v~  296 (450)
T 1z7z_I          228 GDQRLNPT----VTYGND----SFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA-PNVILTKP-EVS  296 (450)
T ss_dssp             TTEECCCE----EEEETT----EEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC-CEEEESCS-EEE
T ss_pred             CCEeCCce----EEecCC----ceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCC-CeEecCCe-eEe
Confidence            99887652    111111    11122333 78999999  99999999999998888888854322 34432221 111


Q ss_pred             hhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCc-c---ee
Q psy10487        375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQP-D---ME  450 (610)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~---~~  450 (610)
                      .+ .            .+.+.|...+.+...|     .+..+........|.|..+..+|+|.|+|.|.|..| .   ..
T Consensus       297 ~G-~------------~v~l~C~~~p~p~i~W-----~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~  358 (450)
T 1z7z_I          297 EG-T------------EVTVKCEAHPRAKVTL-----NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN  358 (450)
T ss_dssp             TT-C------------EEEEEEEC---------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEE
T ss_pred             CC-C------------cEEEEEecCCCCEeEE-----CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccc
Confidence            11 1            1234454444444444     222222233445899999999999999999998665 3   33


Q ss_pred             eeeecccccCCCcc-------eeEecCCCC--Cc-ccccCCCc-ccccC
Q psy10487        451 LIEQSLAMEQPPVH-------ITIESHAVD--PQ-VSVFPPPP-EFSSN  488 (610)
Q Consensus       451 ~~~~l~v~~~pp~~-------i~ie~~~~~--~l-~~~~P~pp-ef~~~  488 (610)
                      ....|.|..+|...       +++.....-  .| +.++|+|- .|..+
T Consensus       359 ~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~  407 (450)
T 1z7z_I          359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD  407 (450)
T ss_dssp             EEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEET
T ss_pred             eeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEEC
Confidence            56677665443221       122221111  33 77787776 66633

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.52  E-value=7.1e-14  Score=154.44  Aligned_cols=201  Identities=13%  Similarity=0.114  Sum_probs=121.7

Q ss_pred             eecceEeecCceEEEEEEEEecCCC---eEEEEeCCEEe-----ccCCccceeeccCCceee-----eeeEEEEEecCCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVL-----HNSSFDLLEEEEGDALFE-----KSVSITLFNVTDL  332 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l-----~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~  332 (610)
                      .|..+.+.+|+.++|.|.+.|.|.|   .+.|+|++...     ............++..+.     ....|+|.+++.+
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            4667889999999999999998765   89999987532     111000000000000011     1247999999999


Q ss_pred             CCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe-eEEEEEEeeecccccccccC-
Q psy10487        333 DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG-MSFCVCRAHEHKNKRRKRKG-  410 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  410 (610)
                      |+|.|+|.|.|..|..+..+.|.|..   +|.+...+....+..+..+.+.|.+.+.. ...+.|++............ 
T Consensus        86 D~G~Y~C~~~n~~~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           86 DSGRYKCGLGINSRGLSFDVSLEVSQ---GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             cCEEEEEEcccCCCCceEEEEEEEec---CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            99999999999999888888888843   34444444444444433333333332211 11122222221100000000 


Q ss_pred             -----Cccccccccccc-----cceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCcceeEec
Q psy10487        411 -----KMKQSVSFNDQE-----KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIES  469 (610)
Q Consensus       411 -----~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~ie~  469 (610)
                           .......+...+     ..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+|..+.+..
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~  231 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL  231 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcC
Confidence                 001111111111     27999999999999999999999999999999999887776655443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.52  E-value=5.1e-14  Score=117.57  Aligned_cols=95  Identities=22%  Similarity=0.358  Sum_probs=80.1

Q ss_pred             ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       257 ~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.......      ....|.|.+++.+|+|.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~D~G~   78 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS------GVLTLEILDCHTDDSGT   78 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEET------TEEEEEECSCCGGGCEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECC------CEEEEEEcCCCcccCEE
Confidence            346788888889999999999999999999999999999999988766542222111      12479999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcC
Q psy10487        337 YTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      |+|.|.|..|..+..+.|.|.
T Consensus        79 Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           79 YRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEEEEE
Confidence            999999999999999999884

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=6.3e-14  Score=116.05  Aligned_cols=93  Identities=22%  Similarity=0.265  Sum_probs=78.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+.............     ....|.|.+++.+|+|.|+|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C   79 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED-----NVCELVIRDVTGEDSASIMV   79 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCC-----CEEEEEECCCCcCCCEEEEE
Confidence            5778788888999999999999999999999999999999887655432221111     13489999999999999999


Q ss_pred             EeecCCcceeEEEEEEcC
Q psy10487        340 YAENIRGNASGEISLDLP  357 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~  357 (610)
                      .|.|..|.....+.|.|.
T Consensus        80 ~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           80 KAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCcEEEEEEEEEe
Confidence            999999999999998873

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.51  E-value=6.7e-14  Score=142.75  Aligned_cols=203  Identities=13%  Similarity=0.134  Sum_probs=107.5

Q ss_pred             CCCCCCCCCCCCccCCCc---c-ccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEec
Q psy10487        231 LYSHPLSCTEPGMLQTKH---W-DDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLH  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~---~-~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~  302 (610)
                      .+.+.|+|.+.+......   . ..+......  -+|.+.  .....+.+|+.++|.|.+.|.|+|  .+.|+++|..+.
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~  161 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS  161 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee--ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence            367889998866532210   0 111111111  123332  234667899999999999999877  899999999887


Q ss_pred             cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce---eEEEEEEcCccccccccccCCcceeehhhhH
Q psy10487        303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA---SGEISLDLPEINLATTLSKTDSWYMLVLGIS  379 (610)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~---~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~  379 (610)
                      ..... ......++.+...+.|.|.....+|.|.|+|.|.|..|..   ..++.+.+. ...+|.+...+..  +..+..
T Consensus       162 ~~~~~-~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~-v~~~P~i~~~~~~--~~~G~~  237 (327)
T 2wng_A          162 DFQTN-VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET-IRVPPTLEVTQQP--VRAENQ  237 (327)
T ss_dssp             CEEEE-EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT-BCBCCEEEEEEEC--CSSTTC
T ss_pred             ccccc-cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc-cCCCCEEEEecCC--cCCCCc
Confidence            54421 1111222334555678998888788899999999998863   334444332 1223333322221  111111


Q ss_pred             HHHHHHHHhheeEEEEEEeeecc----cccccccCCccc----cccccccc------cceeeeeeeeccCcceeeeecCC
Q psy10487        380 VCVVSVIVSIGMSFCVCRAHEHK----NKRRKRKGKMKQ----SVSFNDQE------KKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                                  +.+.|...+.+    ...|.+.+..-.    .......+      ..|.|..+..+|+|.|+|.|.|.
T Consensus       238 ------------v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~  305 (327)
T 2wng_A          238 ------------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD  305 (327)
T ss_dssp             ------------CEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEET
T ss_pred             ------------EEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeC
Confidence                        12344433321    122322211100    00011111      34778888889999999999999


Q ss_pred             Ccceee
Q psy10487        446 QPDMEL  451 (610)
Q Consensus       446 ~G~~~~  451 (610)
                      +|..-.
T Consensus       306 ~~~~~s  311 (327)
T 2wng_A          306 GQPAVS  311 (327)
T ss_dssp             TCCCEE
T ss_pred             CCCCch
Confidence            987433

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.51  E-value=4.4e-15  Score=151.54  Aligned_cols=181  Identities=17%  Similarity=0.129  Sum_probs=101.6

Q ss_pred             ceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEec----cCC---cccee-eccCCceeeeeeEEEEEecCCC
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLH----NSS---FDLLE-EEEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~----~~~---~~~~~-~~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      .+...+..+.+.+|++++|.|.+.|. |.|.|.|++++....    ...   ..+.. ...........+.|.|.+++.+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            45556778899999999999999998 999999999875321    100   00000 0000000022358999999999


Q ss_pred             CCeEEEEEeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccc-c
Q psy10487        333 DAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR-R  406 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  406 (610)
                      |+|.|+|.|.|..|..     ...+.|.|...+..|.+.. +.. .+..+..            +.+.|...+.+... .
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~-~~~-~~~~g~~------------~~l~C~~~g~p~~~~~  150 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAA-RATPQHT------------VSFTCESHGFSPRDIT  150 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC-CSS-CBCTTCE------------EEEEEEEEEEBSSCCE
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec-ccc-ccCCCCE------------EEEEEEEeCccCCCcE
Confidence            9999999999987742     2346677754444444432 221 1111111            13344433332210 1


Q ss_pred             cccCCcccccccc-------cc------ccceeeeeeeeccCcceeeeecCCCcce---eeeeecc
Q psy10487        407 KRKGKMKQSVSFN-------DQ------EKKLLDVSITTTDRHTGSCEALGSQPDM---ELIEQSL  456 (610)
Q Consensus       407 ~~~~~~~~~~~~~-------~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~---~~~~~l~  456 (610)
                      ..|.+.+..+...       ..      ...|.|.....+|.|.|+|.|.|..|..   +..+.+.
T Consensus       151 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~  216 (327)
T 2wng_A          151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLS  216 (327)
T ss_dssp             EEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGG
T ss_pred             EEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEec
Confidence            2222222211110       11      1235555555557899999999988763   4445553

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.51  E-value=4.9e-15  Score=141.39  Aligned_cols=183  Identities=10%  Similarity=0.037  Sum_probs=93.7

Q ss_pred             ecceEeecCceEEEEEEEEecCCCe---EEEEeCCEEeccCC-cc-------------ceeecc---CCceeeeeeEEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPT---ILWLLNGQVLHNSS-FD-------------LLEEEE---GDALFEKSVSITL  326 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~---v~W~~~g~~l~~~~-~~-------------~~~~~~---~~~~~~~~~~L~I  326 (610)
                      +..+.+.+|++++|.|.+.|.|.+.   |.|+|++..+.... ..             ......   ........++|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3456788999999999999988774   89999765432110 00             000000   0001123458999


Q ss_pred             EecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeeh-hhhHHHHHHHHHhheeEEEEEEeeecccc
Q psy10487        327 FNVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLV-LGISVCVVSVIVSIGMSFCVCRAHEHKNK  404 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (610)
                      .+++.+|+|.|+|.|.|..|.... ...+.+...   |.....+...... .......++...+.+...+.|++......
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~  164 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ---PENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA  164 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC---CEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC---CceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcccc
Confidence            999999999999999998876544 334444211   1111111111111 11000000000011111112221111110


Q ss_pred             cccc-cCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        405 RRKR-KGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       405 ~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .... .....+   .....+.|.|..+..+|+|.|+|+|.|.+|..+..+.+
T Consensus       165 ~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v  213 (225)
T 4fmk_A          165 KDTQEPGIQAG---TVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPV  213 (225)
T ss_dssp             EEEEEECSSTT---CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred             CCcceEEecCC---CEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEE
Confidence            0000 000000   00112369999999999999999999999876654443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=1.3e-13  Score=133.37  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=118.2

Q ss_pred             CcEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         36 KKSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      -+.++..+++++.++. .+  ..+|++|+|++|.|+.++...|.  ++++|++|+|++|.|+.+.+..|..+++|++|+|
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            3679999999998854 33  35899999999999999998888  7999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487        113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus       113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                      ++|+|..++ ..+..+++|+.|+|++|.++.+....|..+++|+.|+|++|.+....
T Consensus       120 s~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          120 CCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999999886 45788999999999999999999888999999999999999987653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.51  E-value=2.1e-14  Score=147.83  Aligned_cols=191  Identities=9%  Similarity=-0.040  Sum_probs=109.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCC-----------CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPE-----------PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF  327 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-----------p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~  327 (610)
                      |..........+.+.+|+.+.|.|.+.|.|.           |.|.|++++............ ..........+.|.|.
T Consensus         6 c~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~   84 (349)
T 4dep_C            6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR-LPENRISKEKDVLWFR   84 (349)
T ss_dssp             CEEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCC-CGGGCEEEETTEEEES
T ss_pred             ccccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccccc-ccCceEeecCCEEEEc
Confidence            4333444456788999999999999997664           999999987421100000000 0001111234589999


Q ss_pred             ecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccc-ccccCCcceeehhhhHHHHHHHH-----HhheeEEEEEEeeec
Q psy10487        328 NVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT-TLSKTDSWYMLVLGISVCVVSVI-----VSIGMSFCVCRAHEH  401 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  401 (610)
                      +++.+|+|.|+|.|.|..|.....+.|.|....... .....+....+..+..+.+.|.+     .+.+...+.|.+.+.
T Consensus        85 ~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~  164 (349)
T 4dep_C           85 PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY  164 (349)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred             cCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence            999999999999999999998888888885422111 01111111222222211111110     111222222222211


Q ss_pred             ccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCC-cce---eeeeeccccc
Q psy10487        402 KNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQ-PDM---ELIEQSLAME  459 (610)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~---~~~~~l~v~~  459 (610)
                      +-         .....+...+..|.|.+++.+|+|.|+|.|.|.. |..   +....+.+..
T Consensus       165 ~l---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          165 KI---------QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             EC---------CSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             EC---------CCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            10         1112223344679999999999999999999987 553   4555555544

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.51  E-value=2.5e-14  Score=117.17  Aligned_cols=89  Identities=18%  Similarity=0.319  Sum_probs=73.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++  ..+.....  ....      ...+.|.|.+++.+|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~------~~~~~L~i~~~~~~D~G~Y   73 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAK------SSTTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEE------TTEEEEECTTBCGGGCEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEec------CCEEEEEECCCChhcCEEE
Confidence            567766777888999999999999999999999999999  77654321  1111      1235899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.|..|.++.++.|.|
T Consensus        74 ~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           74 KLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEEEEE
Confidence            9999999999999998887

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.50  E-value=5.4e-15  Score=148.98  Aligned_cols=205  Identities=15%  Similarity=0.106  Sum_probs=123.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceee-----eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-----KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-----~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|+|.+.+..+.. ...+... +..+|.+..     .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....
T Consensus        72 ~d~G~Y~C~a~n~~g~~-~~~~~l~-V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~  149 (305)
T 2nzi_A           72 DDATVYQVRATNQGGSV-SGTASLE-VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG  149 (305)
T ss_dssp             GGCSEEEEEEEETTEEE-EEEEEEE-ECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS
T ss_pred             hhCeEEEEEEEcCCCCc-cceEEEE-EecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC
Confidence            46788999987654321 1111111 112333322     2245678899999999999999999999999998876554


Q ss_pred             ccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccccc----CCcceeehhhhHH
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSK----TDSWYMLVLGISV  380 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~----~~~~~~~~~~~~~  380 (610)
                      +.......      ..+.|.|.+ ++.+|+|.|+|.|.|..|.....+.|.|...+.+|....    ......+......
T Consensus       150 ~~~~~~~~------~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~  223 (305)
T 2nzi_A          150 HYQVIVTR------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPA  223 (305)
T ss_dssp             SCEEEECS------SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCS
T ss_pred             cEEEEEcC------CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCc
Confidence            32222111      235899999 999999999999999999999999999865544433211    1111111000000


Q ss_pred             HHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                          ......+..|....+......|..   ...     .....|.|.++...|.|.|.|.|.|..|..+.+...
T Consensus       224 ----~~g~~~i~~y~v~~~~~~~~~w~~---~~~-----~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~  286 (305)
T 2nzi_A          224 ----SDGGSKITNYIVEKCATTAERWLR---VGQ-----ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS  286 (305)
T ss_dssp             ----CCSBSCEEEEEEEEEETTSCCEEE---EEE-----ESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCC
T ss_pred             ----cCCCCceeEEEEEEecCCCCccEE---Ccc-----ccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCC
Confidence                000001112222222222222211   111     125578999999999999999999999987655443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.50  E-value=2.2e-14  Score=148.72  Aligned_cols=191  Identities=14%  Similarity=0.074  Sum_probs=119.2

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-----cCCCeEEEEeCCEEeccC-
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-----DPEPTILWLLNGQVLHNS-  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-----~P~p~v~W~~~g~~l~~~-  304 (610)
                      .+.+.|+|.+.+... .....+..... .+|..   +....+.+|+.+.|.|.+.|     .|.|.+.|+++|..+... 
T Consensus       152 ~d~G~Y~C~a~~~~~-~~~~~~~l~v~-~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~  226 (363)
T 1wio_A          152 QDSGTWTCTVLQNQK-KVEFKIDIVVL-AFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSW  226 (363)
T ss_dssp             GGCEECEEEEEETTE-EEEECCEECEE-CCSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCE
T ss_pred             hcCCEEEEEEecCCC-eEEEEEEEEEe-cCCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceE
Confidence            467889998865422 11112222111 22322   25667889999999998887     889999999999877652 


Q ss_pred             ------Cccceeec-cCC--ceeee--eeEEEEEecCCCCCeEEEEEeecC--CcceeEEEEEEcCccccccccccCCcc
Q psy10487        305 ------SFDLLEEE-EGD--ALFEK--SVSITLFNVTDLDAGEYTCYAENI--RGNASGEISLDLPEINLATTLSKTDSW  371 (610)
Q Consensus       305 ------~~~~~~~~-~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~~~~L~V~~~~~~p~~~~~~~~  371 (610)
                            ........ ..+  .....  ...|.|.+++.+|+|.|+|.|.|.  .|.....+.|.|....      ..+  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~------g~~--  298 (363)
T 1wio_A          227 ITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT------QLQ--  298 (363)
T ss_dssp             EEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC------CCS--
T ss_pred             EEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec------CCC--
Confidence                  11111100 000  00001  238999999999999999999999  9999999999884211      000  


Q ss_pred             eeehhhhHHHHHHHHHhheeEEEEEEeeeccccc-ccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        372 YMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR-RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                                          +.+.|...+.+.+. ...|.+.+..+.   ....|.|.+++.+|+|.|+|.|.|. |...
T Consensus       299 --------------------~~l~C~~~g~p~p~~~i~W~~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~  354 (363)
T 1wio_A          299 --------------------KNLTCEVWGPTSPKLMLSLKLENKEAK---VSKREKAVWVLNPEAGMWQCLLSDS-GQVL  354 (363)
T ss_dssp             --------------------SSEEEEEESSCCTTCCEEEECSSSSCS---EEESSSEEEESSCCSEEEEEEECSS-SSCC
T ss_pred             --------------------eeEEEEEccccCCCccEEEEeCCCcee---eeeeeeeeeeccccceeEEEEEecC-CeEE
Confidence                                12344433332221 133444443332   3557899999999999999999974 5566


Q ss_pred             eeeecccc
Q psy10487        451 LIEQSLAM  458 (610)
Q Consensus       451 ~~~~l~v~  458 (610)
                      .++.+.|+
T Consensus       355 ~~~~~~V~  362 (363)
T 1wio_A          355 LESNIKVL  362 (363)
T ss_dssp             EEEEEEEC
T ss_pred             EecceEec
Confidence            66666553

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.50  E-value=1.1e-14  Score=143.88  Aligned_cols=186  Identities=12%  Similarity=0.062  Sum_probs=110.8

Q ss_pred             CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccC
Q psy10487        235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG  314 (610)
Q Consensus       235 ~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~  314 (610)
                      .|+|.+.+..+... ..+.......++ ..+......+.+|+.++|.|.+.  |.|.++|  +|..+....         
T Consensus        75 ~Y~C~a~n~~~~~~-~~~~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---------  139 (265)
T 2oz4_A           75 RLTCAVILGNQSQE-TLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------  139 (265)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEECCCC-CEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---------
T ss_pred             eEEEEEecCCCCcE-EEEEEEEeCCCC-ceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---------
Confidence            59998876554321 222222222222 22335566788899999999998  9999999  777663211         


Q ss_pred             CceeeeeeEEEEEecCCCCCeEEEEEeecCC-ccee---EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487        315 DALFEKSVSITLFNVTDLDAGEYTCYAENIR-GNAS---GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG  390 (610)
Q Consensus       315 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~~---~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (610)
                           ..+.|.|..+..+|.|.|+|.|.|.. |...   ..+.|.|...+.. .....+....+..+..+.+.|.+    
T Consensus       140 -----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~-~~~~~p~~~~v~~g~~~~l~C~~----  209 (265)
T 2oz4_A          140 -----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL-DERDCPGNWTWPENSQQTPMCQA----  209 (265)
T ss_dssp             -----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEEC-CGGGSCSEEEEETTCEECCCCCC----
T ss_pred             -----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcc-ccccCCCccEEcCCCeEEEEeEC----
Confidence                 12478899999999999999998644 7665   6777777433222 11222222223222222222221    


Q ss_pred             eEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        391 MSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                            ...+.+...|.+.+.   ..   ...+.+  ..++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       210 ------~g~P~p~i~W~~~~~---~~---~~~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          210 ------WGNPLPELKCLKDGT---FP---LPIGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             ------EEESCCEEEEEETTT---EE---CCTTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ------ccCCCCeEEEEECCc---cc---CCCCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence                  222222223333222   11   111222  35888999999999999999999988887753

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.50  E-value=7.9e-14  Score=115.44  Aligned_cols=94  Identities=31%  Similarity=0.459  Sum_probs=78.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+............+     ....|.|.+++.+|+|.|+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~   78 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYT   78 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGG-----GEEEEEESSCCGGGCEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC-----CEEEEEEccCCcCCCEEEE
Confidence            36778888888899999999999999999999999999999887654322222111     1237999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.|.|..|.....+.|.|.
T Consensus        79 C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           79 CKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCceeEEEEEEEE
Confidence            9999999999999998884

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.50  E-value=4.9e-14  Score=133.16  Aligned_cols=162  Identities=12%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+......... ...    ...+.|.|.+++.+|+|.|+|
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~-~~~----~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH-HDG----VSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE-ETT----EEEEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec-CCC----CceEEEEeccCCcccCeEEEE
Confidence            577776665 67889999999999974 78899999998765432111000 000    234689999999999999999


Q ss_pred             EeecCCc-----ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487        340 YAENIRG-----NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ  414 (610)
Q Consensus       340 ~a~N~~G-----~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (610)
                      .|.|..+     ..+..+.|.|.+...+|.+...+......+ ..            +...|......  .+..|.+++.
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G-~~------------v~L~C~~~~~~--~~~~w~k~g~  145 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAG-EN------------VTLSCSSRSSY--DMYHLSREGE  145 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTT-CE------------EEEEEEESSCC--SEEEEEETTC
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCC-Ce------------EEEEEeCCCCC--ceEEEEECCc
Confidence            9987532     235567777755444455544333222221 11            13344333211  1112222222


Q ss_pred             cccc---------cccccceeeeeeeeccCcceeeeecCC
Q psy10487        415 SVSF---------NDQEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       415 ~~~~---------~~~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      .+..         ...+..|.|.+++  |+|.|+|.|.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            1110         1125689999998  999999999875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.50  E-value=4.6e-14  Score=141.16  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=104.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|++++|.|.+.|    .+.|++++..+.      ...       ...+.|.|.+++.+|+|.|+
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~~-------~~~~~L~i~~~~~~d~G~Y~   73 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MVE-------NKKNEWIQEKAEATRTGTYT   73 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EEE-------ECSSEEEETTCCGGGCEEEE
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------eec-------CCCceEEEeccCHHhCeEEE
Confidence            4677777788889999999999999988    899999987661      000       11158999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhee-EEEEEEeeecccccccccCCcccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGM-SFCVCRAHEHKNKRRKRKGKMKQSVS  417 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (610)
                      |.|.|  |. ...+.|.|...+..  + .......+..+..+.+.|.+.+ +. ..+.|+++.....       ......
T Consensus        74 C~~~n--g~-~~~~~l~V~~~~~~--~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l-------~~~~~~  139 (290)
T 2o26_X           74 CSNSN--GL-TSSIYVFVRDPAKL--F-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSL-------PTDLTF  139 (290)
T ss_dssp             EEESS--SC-EEEEEEEEECSSCC--B-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCC-------CTTCEE
T ss_pred             EEeeC--Cc-cEEEEEEEeCCCcc--c-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCC-------CCCCce
Confidence            99999  55 66777777532221  1 2222222222222222222221 21 2233322211110       001111


Q ss_pred             ccccccceeeeeeeeccCc-ceeeeecCCCcceee-eeecccc
Q psy10487        418 FNDQEKKLLDVSITTTDRH-TGSCEALGSQPDMEL-IEQSLAM  458 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~~~~-~~~l~v~  458 (610)
                      ....++.|.|.+++.+|+| .|+|.|.|..|.... ...+.|.
T Consensus       140 ~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          140 VPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             EEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            1233467999999999999 999999998665333 3455443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=8e-14  Score=130.97  Aligned_cols=102  Identities=21%  Similarity=0.317  Sum_probs=74.3

Q ss_pred             EEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487         85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ  164 (610)
Q Consensus        85 ~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~  164 (610)
                      .+++++|++..++...   ..+|++|+|++|+|+.++ ..|.++++|+.|+|++|.|+.+.+..|.++++|+.|+|++|+
T Consensus        14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3444444444443321   135666666666666665 456677777777777777777777778888888999999999


Q ss_pred             ccccCHHHhhcCcccccccccccccc
Q psy10487        165 IHSVHKDALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       165 l~~~~~~~~~~l~~L~~L~L~~n~l~  190 (610)
                      |+.+.+..|..+++|+.|+|++|.|+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            99998888999999999999999875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.50  E-value=6.5e-15  Score=157.13  Aligned_cols=209  Identities=13%  Similarity=0.092  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCCccCCC--ccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQTK--HWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~--~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~  303 (610)
                      .+.+.|.|.+.+.....  ...  .+... ....+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++++..+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~  168 (444)
T 1igt_B           89 EDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV  168 (444)
T ss_dssp             GGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             HHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCe
Confidence            36788999887653221  001  11111 11234655544433445789999999999985 887 9999999876321


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc---------------ccccccc-cc
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE---------------INLATTL-SK  367 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~---------------~~~~p~~-~~  367 (610)
                      ....... ..  +.+...+.|.|.++..+| |.|+|.|.|..|.......+.+.+               ....|.+ ..
T Consensus       169 ~~~~~~~-~~--~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~  244 (444)
T 1igt_B          169 HTFPAVL-QS--DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF  244 (444)
T ss_dssp             EECCCEE-ET--TEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE
T ss_pred             EecCccc-cC--CcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec
Confidence            1111111 11  233445789999999999 999999999999876555544311               1111221 11


Q ss_pred             CCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc------cccccccCCcccc----ccc------cccccceeeeeee
Q psy10487        368 TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK------NKRRKRKGKMKQS----VSF------NDQEKKLLDVSIT  431 (610)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~------~~~~~~L~i~~v~  431 (610)
                      .+....           .+.....+.+.|...+.+      ...|.+.+..-..    ...      ....+.|.|.+++
T Consensus       245 ~p~~~~-----------~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  313 (444)
T 1igt_B          245 PPKIKD-----------VLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD  313 (444)
T ss_dssp             CCCHHH-----------HHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH
T ss_pred             CCchhh-----------eeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHH
Confidence            111100           011111123344433331      2334332211000    000      0123479999999


Q ss_pred             eccCcceeeeecCCCcceeeeee
Q psy10487        432 TTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       432 ~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      .+|+|.|+|.|.|..|.......
T Consensus       314 ~~d~G~Y~C~a~n~~~~~~~~~~  336 (444)
T 1igt_B          314 WMSGKEFKCKVNNKDLPAPIERT  336 (444)
T ss_dssp             HHTTCEEEEEEECTTCSSCEEEE
T ss_pred             hccCCcEEEEEEcCCCCCceEEE
Confidence            99999999999999987643333

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=7.1e-14  Score=116.03  Aligned_cols=91  Identities=25%  Similarity=0.407  Sum_probs=77.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+..........        ..+.|.|.+++.+|+|.|+
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYT   78 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEE
Confidence            47888888889999999999999999999999999999998876433222221        2248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.|.|..|.....+.|.|.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           79 CVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             EEEECSSCCCBCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEEEEEe
Confidence            9999999999999998884

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.49  E-value=1.7e-15  Score=151.47  Aligned_cols=202  Identities=12%  Similarity=0.036  Sum_probs=112.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccC-C--Cceeeeec--ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFAC-P--PNVTIKES--MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c-~--P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|+|.+.+..+...........+.- +  |.+...+.  .+.+.+|+.++|.|.+. .|.|.++|++++...... 
T Consensus        61 ~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~-  138 (289)
T 3mjg_X           61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP-  138 (289)
T ss_dssp             GGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC-
T ss_pred             hhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc-
Confidence            36788999998766331111111111111 1  22212222  26788999999999998 788999999865211111 


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHH
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVS  384 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~  384 (610)
                         ...+...      +.+     ...|+|.|+|.|.|..|... ..+.|.|... .+|.+...+....+..+..     
T Consensus       139 ---~~~~~~~------~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~i~~~~~~~~v~~G~~-----  198 (289)
T 3mjg_X          139 ---VPYDHQR------GFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSINVSVNAVQTVVRQGEN-----  198 (289)
T ss_dssp             ---CCEETTT------EEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCCCEEEESCSEEETTSC-----
T ss_pred             ---eeecCCc------Cee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCCcEEeCCcceeEcCCC-----
Confidence               0001110      111     36799999999998887653 4466776543 3333333322222222222     


Q ss_pred             HHHhheeEEEEEEeeecc--cccccccCCcccc-cc---------ccccccceeeeeeeeccCcceeeeecCCCcceeee
Q psy10487        385 VIVSIGMSFCVCRAHEHK--NKRRKRKGKMKQS-VS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~  452 (610)
                             +.+.|.....+  ...|.+....... ..         .......|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus       199 -------v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  271 (289)
T 3mjg_X          199 -------ITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE  271 (289)
T ss_dssp             -------EEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEE
T ss_pred             -------EEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeE
Confidence                   13344433332  3334321111110 10         12344689999999999999999999999999999


Q ss_pred             eecccccCC
Q psy10487        453 EQSLAMEQP  461 (610)
Q Consensus       453 ~~l~v~~~p  461 (610)
                      +.|.+...+
T Consensus       272 ~~l~v~~~~  280 (289)
T 3mjg_X          272 KAINITVVE  280 (289)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            999887643

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=133.60  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             eecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccC---Ccc-c-e-eec---cCCceeeeeeEEEEEecCCCCCe
Q psy10487        266 KESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNS---SFD-L-L-EEE---EGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~---~~~-~-~-~~~---~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      .+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+...   ... . . ..+   .++..+...+.|+|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            356678899999999999975 556799999998655311   000 0 0 000   01111123468999999999999


Q ss_pred             EEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec---ccccccccCCc
Q psy10487        336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH---KNKRRKRKGKM  412 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  412 (610)
                      .|+|.|.|..|.....+.|.|.+....|.+......  ...           +...+...|...+.   +...|.+   .
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~--~~~-----------g~~~v~L~C~~~g~~p~p~i~W~~---~  147 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQL--FQN-----------MTCELHLTCSVEDADDNVSFRWEA---L  147 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC-----C-----------SSEEEEEEEEEESCCTTCEEEEEE---T
T ss_pred             eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCcee--ecC-----------CCceEEEEEEEecCCCceEEEEEe---C
Confidence            999999999998777888888544333333322210  000           00012445554442   2333433   2


Q ss_pred             cccccccccccceeeeeeeec-cCcceeeeecCCCcceeee
Q psy10487        413 KQSVSFNDQEKKLLDVSITTT-DRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       413 ~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~A~N~~G~~~~~  452 (610)
                      +..+   ..+..|.|.....+ |+|.|+|.|.|..|..+..
T Consensus       148 g~~l---~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          148 GNTL---SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             TEEE---ESSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CEEc---CCCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            2221   22345777544444 8999999999999987554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=3e-14  Score=131.74  Aligned_cols=132  Identities=23%  Similarity=0.303  Sum_probs=115.2

Q ss_pred             CCCCccEEEcccCCCcccchhhhcCCC-CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccE
Q psy10487         79 GLLNLQRIYLKNSGIREVHRDTFKYLT-ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT  157 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~-~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  157 (610)
                      .+.+|+.|++++|.+..++ . +..+. +|++|+|++|+|..+  ..|..+++|++|+|++|.++.+++..|..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            5789999999999999884 3 44444 999999999999988  56899999999999999999998777788999999


Q ss_pred             EEccCccccccCH-HHhhcCccccccccccccccccCcc---cccCCCcccEEecCCCccc
Q psy10487        158 IELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSES---VFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       158 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l~l~~N~~~  214 (610)
                      |+|++|+|..++. ..+..+++|+.|++++|.+..++..   .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999988854 4788899999999999999988764   5778999999999988753

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=118.22  Aligned_cols=97  Identities=22%  Similarity=0.318  Sum_probs=79.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      -+|.|...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+............++    ....|.|.+++.+|+|.|+
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~   89 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT----GRVTLLIKDVNKKDAGWYT   89 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTT----CEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCC----CeEEEEECCCCcccCEEEE
Confidence            468888888999999999999999999999999999999998875332222222221    1238999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcc
Q psy10487        339 CYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      |.|.|..|.....+.|.|...
T Consensus        90 C~a~N~~G~~~~~~~l~V~~~  110 (116)
T 2kkq_A           90 VSAVNEAGVTTCNTRLDVTAR  110 (116)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCCCeEEEEEEEEEeCC
Confidence            999999999999999988543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.49  E-value=2.2e-14  Score=136.10  Aligned_cols=145  Identities=14%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             eecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       272 v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      +.+|++++|.|.+   |.|.|.|+|+|..+....             ...+.|.|.+++.+|+|.|+|.+.|... .  .
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-------------~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~   75 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------------EDKKKWNLGSNAKDPRGMYQCKGSQNKS-K--P   75 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-------------SSCCCEEEEEGGGCCEEEEEEESSSSCC-C--C
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-------------CCCCeEEeCCCCcCCCEEEEEEecCCCC-e--e
Confidence            3579999999998   889999999998875421             0124799999999999999999876432 2  2


Q ss_pred             EEEEcCcc----------------------------ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc
Q psy10487        352 ISLDLPEI----------------------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN  403 (610)
Q Consensus       352 ~~L~V~~~----------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (610)
                      +.|.|...                            ...+.+...+....+.+ .            .+.+.|...+.+.
T Consensus        76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G-~------------~v~L~C~g~p~p~  142 (204)
T 1sy6_A           76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISG-T------------TVILTCPQYPGSE  142 (204)
T ss_dssp             EEEEEEC------------------------------------CCCCEEEEET-T------------EEEEECSCCCSSC
T ss_pred             EEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecC-C------------cEEEEcCCCCCCc
Confidence            33433200                            00111111111111111 1            1233444333333


Q ss_pred             ccccccCCcc----ccccccccccceeeeee-eeccCcceeeeecCCCcc
Q psy10487        404 KRRKRKGKMK----QSVSFNDQEKKLLDVSI-TTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       404 ~~~~~~~~~~----~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~  448 (610)
                      ..|.+.+..-    ........++.|.|.++ +.+|+|.|+|.|.|..|.
T Consensus       143 i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          143 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             EEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             eEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            3333322110    01111224678999999 999999999999999996

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.49  E-value=1.2e-14  Score=143.08  Aligned_cols=188  Identities=13%  Similarity=0.129  Sum_probs=102.9

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccC-CccceeeccCCcee-----eeeeEEEEEec
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNS-SFDLLEEEEGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~-~~~~~~~~~~~~~~-----~~~~~L~I~~v  329 (610)
                      ..+...+..+.+.+|++++|.|.+.+.|.|.+.|++..  ..   +... .........++...     .....|+|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34566677889999999999999999999999999832  11   1000 00000000011000     12358999999


Q ss_pred             CCCCCeEEEEEeecCCcc----eeEEEEEEcCc-----------------cccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        330 TDLDAGEYTCYAENIRGN----ASGEISLDLPE-----------------INLATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~----~~~~~~L~V~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                      +.+|+|.|.|.|.|..|.    ....+.|.|..                 ...++.+...+....+..+..+.+.|.+..
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            999999999999998763    22345666643                 223444444444444333333222222221


Q ss_pred             heeEEEEEEeeec-cccccccc---------CCccccccc---cccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        389 IGMSFCVCRAHEH-KNKRRKRK---------GKMKQSVSF---NDQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       389 ~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      . ...+.|.+... ........         ......+..   ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence            1 11222222111 00000000         000011111   1234479999999999999999999987754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2.5e-14  Score=128.34  Aligned_cols=130  Identities=20%  Similarity=0.186  Sum_probs=112.1

Q ss_pred             CCCCccEEEcccCCCc-ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccE
Q psy10487         79 GLLNLQRIYLKNSGIR-EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT  157 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~-~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  157 (610)
                      ...+|+.|++++|.+. ...+..|..+++|++|++++|++..+  ..|..+++|++|+|++|.++...+..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3568999999999998 33345789999999999999999988  67899999999999999999865656667899999


Q ss_pred             EEccCccccccC-HHHhhcCccccccccccccccccCc---ccccCCCcccEEecCC
Q psy10487        158 IELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSE---SVFFPTPNLKTLSLDG  210 (610)
Q Consensus       158 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~  210 (610)
                      |++++|+++.+. +..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999874 3678899999999999999999887   5788889999998753

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.49  E-value=5.3e-14  Score=143.44  Aligned_cols=190  Identities=13%  Similarity=0.067  Sum_probs=105.9

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEec----CCCeEEEEeCC--EEe--cc-----------CCccceeeccCCceee
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGD----PEPTILWLLNG--QVL--HN-----------SSFDLLEEEEGDALFE  319 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~----P~p~v~W~~~g--~~l--~~-----------~~~~~~~~~~~~~~~~  319 (610)
                      +++.+...+..+.+.+|++++|.|.+.+.    +.+.+.|++++  ...  ..           ....+......   ..
T Consensus        13 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~---~~   89 (331)
T 3u83_A           13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP---SF   89 (331)
T ss_dssp             --------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSC---SS
T ss_pred             CCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEeccc---CC
Confidence            45555566778899999999999999886    55679999954  211  00           00000110000   01


Q ss_pred             eeeEEEEEecCCCCCeEEEEE-eecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE-
Q psy10487        320 KSVSITLFNVTDLDAGEYTCY-AENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR-  397 (610)
Q Consensus       320 ~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  397 (610)
                      ..+.|.|.+++.+|+|.|+|. +.|..|.....+.|.|...+.... ........+..+...         -.+.+.|. 
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~~~g~~~---------~~~~l~C~~  159 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWI-EGTQAVLRAKKGQDD---------KVLVATCTS  159 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-EECSSCEEECTTCCC---------CEEEEEEEE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCccee-ecCCCceeecCCCcc---------ceEEEEEEe
Confidence            235899999999999999998 677788888888888854322111 111222222211000         00122332 


Q ss_pred             ee--ecccccccccCCcccc-cccc------ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        398 AH--EHKNKRRKRKGKMKQS-VSFN------DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       398 ~~--~~~~~~~~~~~~~~~~-~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ..  +.+...|.+....... ....      .....|.|..+..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       160 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P  232 (331)
T 3u83_A          160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP  232 (331)
T ss_dssp             EEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEE
T ss_pred             cCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCC
Confidence            22  2223334332111000 0011      112346777778899999999999999998888888876543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.49  E-value=2.6e-13  Score=133.96  Aligned_cols=160  Identities=15%  Similarity=0.083  Sum_probs=103.5

Q ss_pred             eEeecCceEEEEEEEEe-cCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEec---CCCCCeE--EEEEe
Q psy10487        270 VIREAGGNVTMSCYVYG-DPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV---TDLDAGE--YTCYA  341 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g-~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v---~~~D~G~--Y~C~a  341 (610)
                      ..+.+|+.++|.|.+.| .|.|  .+.|+++|..+...    ... .+       ..+.+..+   +.+|+|.  |+|.|
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~-~~-------~~~~~~~~~~~~~~d~g~g~Y~C~a   80 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTY-GN-------DSFSAKASVSVTAEDEGTQRLTCAV   80 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEE-CS-------SEEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----Eee-CC-------CeEEEEeecccccccCCcceEEEEE
Confidence            36889999999999999 8887  99999999887641    111 11       24555544   7788885  99999


Q ss_pred             ecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccccc
Q psy10487        342 ENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQ  421 (610)
Q Consensus       342 ~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (610)
                      .|..|.....+.|.|...+. |.+..... ....+ ..            +.+.|...+.+...|     .+..+.....
T Consensus        81 ~n~~~~~~~~~~l~V~~~p~-p~~~~~~~-~v~~G-~~------------v~l~C~~~p~~~i~W-----~g~~~~~~~~  140 (265)
T 2oz4_A           81 ILGNQSQETLQTVTIYSFPA-PNVILTKP-EVSEG-TE------------VTVKCEAHPRAKVTL-----NGVPAQPLGP  140 (265)
T ss_dssp             EETTEEEEEEEEEEEECCCC-CEEEESCS-EEETT-CE------------EEEEEECCTTSEEEE-----SSCSSSCCSS
T ss_pred             ecCCCCcEEEEEEEEeCCCC-ceeecCCc-eecCC-Cc------------EEEEEEccCCCEEEE-----CCEEccCCCC
Confidence            99999998888888854322 23332211 11111 11            233555443334444     2222333344


Q ss_pred             ccceeeeeeeeccCcceeeeecCCC-ccee---eeeecccccCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQ-PDME---LIEQSLAMEQP  461 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~~---~~~~l~v~~~p  461 (610)
                      ...|.|..+..+|.|.|+|.|.|.. |...   ....|.|..+|
T Consensus       141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p  184 (265)
T 2oz4_A          141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP  184 (265)
T ss_dssp             EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE
T ss_pred             cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC
Confidence            5678888888889999999998644 7765   55666665443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.49  E-value=7.1e-14  Score=137.58  Aligned_cols=194  Identities=11%  Similarity=0.060  Sum_probs=98.5

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---ecc-CC-ccceeec--cCCceee-----eeeEEEEEec
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHN-SS-FDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~-~~-~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .+..+.+.+|++++|.|.+.|.|  .|.|.|+|+  +..   +.. .. .......  .++....     ....|+|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            45566889999999999999986  789999985  221   110 00 0000000  0111111     1358999999


Q ss_pred             CCCCCeEEEEEeecCCc-------c--eeEEEEEEcCccc------------cccccccCCcceeehhhhHHHHHHHHHh
Q psy10487        330 TDLDAGEYTCYAENIRG-------N--ASGEISLDLPEIN------------LATTLSKTDSWYMLVLGISVCVVSVIVS  388 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G-------~--~~~~~~L~V~~~~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (610)
                      +.+|+|.|+|.|.|..|       .  ....+.|.|....            ..+.+...+....+..+..+.+.|.+.+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  165 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ  165 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence            99999999999999865       1  1234567775432            1112222232222222222222222211


Q ss_pred             heeEEEEEEeee-cccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        389 IGMSFCVCRAHE-HKNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       389 ~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .+...+.|.+.. ........      ..........  ......|.|.+++.+|+|.|+|.|.|..........|.|.+
T Consensus       166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~  245 (257)
T 1f3r_B          166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKA  245 (257)
T ss_dssp             CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred             cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeC
Confidence            111122222211 00000000      0000011111  12334799999999999999999999752222233454544

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.49  E-value=9.8e-14  Score=115.10  Aligned_cols=94  Identities=28%  Similarity=0.420  Sum_probs=78.2

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............     ....|.|.+++.+|+|.|+
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~   78 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK-----GLHSLIFEVVRASDAGAYA   78 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT-----TEEEEEESSCCGGGCEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC-----CeEEEEECCCCcccCEEEE
Confidence            35777777888899999999999999999999999999999887665433322221     1248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.|.|..|..+.++.|.|.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           79 CVAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEEEEE
Confidence            9999999999999999884

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.48  E-value=1.5e-14  Score=144.51  Aligned_cols=171  Identities=17%  Similarity=0.185  Sum_probs=103.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+..+.+.+|++++|.|.+.|    .+.|++++.....     ....      ...+.|.|.+++.+|+|.|+|
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-----~~~~------~~~~~L~i~~~~~~d~G~Y~C   68 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-----LDPE------SPGSTLTTRNATFKNTGTYRC   68 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-----ECCC------SSCCEEEESSCCGGGCEEEEE
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-----Eecc------CCccEEEEeeeccccCEEEEE
Confidence            456666677888999999999999987    4999987643211     0001      112589999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc---ccccccCC---cc
Q psy10487        340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN---KRRKRKGK---MK  413 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~  413 (610)
                      .|.|..|..+..+.|.|...+..  +...+....+..+..+            .+.|.....+.   ..|.+...   ..
T Consensus        69 ~~~~~~~~~~~~~~l~V~~~~~~--~~~~~~~~~v~~g~~v------------~L~C~~~~~~~~~~v~W~~~~~~~~~~  134 (289)
T 3ejj_X           69 TELEDPMAGSTTIHLYVKDPAHS--WNLLAQEVTVVEGQEA------------VLPCLITDPALKDSVSLMREGGRQVLR  134 (289)
T ss_dssp             ECCC-----CEEEEEEECCSSCS--EEESCSEEEEETTSCE------------EECEEESCGGGGGSEEEEEGGGEECCT
T ss_pred             EEeccCCcceeEEEEEEeCCCcc--eecccceEEEecCCce------------EeEEEccCCCcceEEEEEecCCeecCC
Confidence            99999999888999998643322  2222222222222221            22333332222   12211100   00


Q ss_pred             ccccccccccceeeeeeeeccCcceeeeec-CCCcceeeeeeccccc
Q psy10487        414 QSVSFNDQEKKLLDVSITTTDRHTGSCEAL-GSQPDMELIEQSLAME  459 (610)
Q Consensus       414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~-N~~G~~~~~~~l~v~~  459 (610)
                      ........++.|.|.+++.+|+|.|+|.|. |..|..+....+.|.+
T Consensus       135 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR  181 (289)
T ss_dssp             TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred             CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence            111112345679999999999999999999 6666666667776664

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.48  E-value=1.4e-14  Score=151.39  Aligned_cols=205  Identities=14%  Similarity=0.150  Sum_probs=124.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.+..+.. ...+.+. +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.........
T Consensus        73 ~D~G~Y~C~a~n~~g~~-~~~~~l~-V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~  150 (389)
T 2jll_A           73 SDSGRYDCEAASRIGGH-QKSMYLD-IEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK  150 (389)
T ss_dssp             GGCEEEEEEEECSSCEE-EEEEEEE-EEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEE
T ss_pred             hhCEEEEEEEEeCCCCc-ceEEEEE-EEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEE
Confidence            46789999998766532 2222221 224566665555567889999999999999999999999999988765422221


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccccc----CCcceeehhhhHHHHHHHH
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSK----TDSWYMLVLGISVCVVSVI  386 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~  386 (610)
                      ....    ...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.|...+.+|....    ......+......    ..
T Consensus       151 ~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~----~~  222 (389)
T 2jll_A          151 TYST----GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPD----SH  222 (389)
T ss_dssp             EEEC----SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCS----CC
T ss_pred             Eecc----CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCC----CC
Confidence            1111    1135899999999999999999999999998888888855544442110    0000000000000    00


Q ss_pred             HhheeEEE-EEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487        387 VSIGMSFC-VCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE  453 (610)
Q Consensus       387 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~  453 (610)
                      .+.++..+ +.|++.. ...   |.    .+........+.|.++...|.|.|.|.|.|..|..+.+.
T Consensus       223 ~g~pi~~y~v~~~~~~-~~~---~~----~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~  282 (389)
T 2jll_A          223 GGVPIHHYQVDVKEVA-SEI---WK----IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK  282 (389)
T ss_dssp             TTSCEEEEEEEEEETT-CSC---CE----EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred             CCcceEEEEEEEEECC-Ccc---cE----EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCc
Confidence            00011111 1111110 000   00    111112345789999999999999999999999765443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.48  E-value=1.7e-14  Score=138.13  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             ceEeecCceEEEEEEEEecCC-----CeEEEEeCCEEecc--CC---------ccceeeccCCceeeeeeEEEEEecCCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE-----PTILWLLNGQVLHN--SS---------FDLLEEEEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~-----p~v~W~~~g~~l~~--~~---------~~~~~~~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      .+.+.+|++++|.|.+.+.|.     +.+.|++++.....  ..         ..+...... ......+.|.|.+++.+
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPD-LLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTT-TGGGTBCCEEECSCCGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecc-cccCCeEEEEECCcccc
Confidence            456789999999999998865     78999997643210  00         000000000 00011458999999999


Q ss_pred             CCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-e--eccccccccc
Q psy10487        333 DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-H--EHKNKRRKRK  409 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~  409 (610)
                      |+|.|+|.+.|. +..+..+.|.|......|.+...+......             ...+.+.|.. .  +.+...|.+.
T Consensus        83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~-------------G~~~~l~C~~~~g~P~~~v~W~~~  148 (222)
T 4i0k_A           83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRP-------------GNMVTITCSSYQGYPEAEVFWKDG  148 (222)
T ss_dssp             GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----C-------------CSEEEEEEEEEEEBSCCEEEEECT
T ss_pred             cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecC-------------CceEEEEEecccccCCCeEEEEcC
Confidence            999999999986 455566677775444444443333211111             1112334443 2  2233334321


Q ss_pred             C-Ccccc-c---ccccccc---ceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        410 G-KMKQS-V---SFNDQEK---KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       410 ~-~~~~~-~---~~~~~~~---~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      . ..... .   .....++   .|.|.+++.+|+|.|+|.|.|..|.....+.+.|.++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          149 QGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             TSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             CCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            1 10000 0   0011222   37899999999999999999999999999999887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=9.1e-14  Score=130.48  Aligned_cols=104  Identities=23%  Similarity=0.360  Sum_probs=87.0

Q ss_pred             cEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcc-cccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccC
Q psy10487         84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQD-TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH  162 (610)
Q Consensus        84 ~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  162 (610)
                      +.|++++|++..++...+   ..|++|+|++|+|..+.+. .|..+++|++|+|++|.++.+.+..|.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            455666666665554322   2678888888888888764 588899999999999999999888999999999999999


Q ss_pred             ccccccCHHHhhcCcccccccccccccc
Q psy10487        163 CQIHSVHKDALIHLTALESLNLNGNRLK  190 (610)
Q Consensus       163 n~l~~~~~~~~~~l~~L~~L~L~~n~l~  190 (610)
                      |+|+.+.+..|..+++|+.|+|++|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            9999998888999999999999999875

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.48  E-value=8.3e-15  Score=139.97  Aligned_cols=178  Identities=12%  Similarity=0.066  Sum_probs=96.9

Q ss_pred             CceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCC---EE--ec-cCCccc-eeec--cCCcee---eeeeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNG---QV--LH-NSSFDL-LEEE--EGDALF---EKSVSITLF  327 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g---~~--l~-~~~~~~-~~~~--~~~~~~---~~~~~L~I~  327 (610)
                      |.+...+ .+.+.+|++++|.|.+.+. |.+.+.|+|..   ..  +. ...... ....  .++...   .....|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            3455556 7889999999999999999 99999999831   11  10 000000 0000  001000   123579999


Q ss_pred             ecCCCCCeEEEEEeecCCc-----ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-
Q psy10487        328 NVTDLDAGEYTCYAENIRG-----NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-  400 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  400 (610)
                      +++.+|+|.|+|.|.|..|     .....+.|.|.... .+|.+...+.....           ..+ ..+.+.|...+ 
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~-----------~~~-~~v~L~C~~~g~  148 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE-----------LKE-NKATLVCLISNF  148 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHH-----------HHT-TEEEEEEEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCccc-----------ccC-CcEEEEEEECcc
Confidence            9999999999999999887     33445677774322 23333221111000           011 11233444333 


Q ss_pred             cc---cccccccCCccccccc-------ccccc------ceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        401 HK---NKRRKRKGKMKQSVSF-------NDQEK------KLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       401 ~~---~~~~~~~~~~~~~~~~-------~~~~~------~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      .+   ...|.+.+   ..+..       ...++      .|.+.....+|+|.|+|.|.|..|..+....
T Consensus       149 ~p~~~~v~W~k~g---~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  215 (218)
T 3s96_B          149 SPSGVTVAWKANG---TPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS  215 (218)
T ss_dssp             BSSCCEEEEEETT---EEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEEC
T ss_pred             cCCCeEEEEEECC---EECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccccc
Confidence            12   22333322   21110       01122      2555556666899999999999987766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=5.4e-14  Score=143.85  Aligned_cols=154  Identities=19%  Similarity=0.312  Sum_probs=110.3

Q ss_pred             CCccEEEeecCCCC--------------------CCChhhhcccC--------CCCccEEEcccCCCcccchhhhcCCCC
Q psy10487         55 SDIQVLDLNNNKIS--------------------YLTKEAFKSIG--------LLNLQRIYLKNSGIREVHRDTFKYLTI  106 (610)
Q Consensus        55 ~~L~~L~L~~n~i~--------------------~l~~~~~~~~~--------l~~L~~L~L~~n~l~~i~~~~f~~l~~  106 (610)
                      .+|++|||++|+|.                    .|+..+|.  +        +.+|+.|+|.+ +++.|...+|.++.+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            46888888888888                    56667776  6        88999999988 899999999999999


Q ss_pred             CcEEEccCCCCCCCCcccccC-----------------------------------------------------------
Q psy10487        107 LVEVDLSDNQIAWLHQDTFLG-----------------------------------------------------------  127 (610)
Q Consensus       107 L~~LdLs~n~l~~l~~~~f~~-----------------------------------------------------------  127 (610)
                      |++|+|++|.+..+.+..|.+                                                           
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            999999988876655554433                                                           


Q ss_pred             -------------------CCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc-ccccccc
Q psy10487        128 -------------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE-SLNLNGN  187 (610)
Q Consensus       128 -------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n  187 (610)
                                         +.+|+.|+|++|.++.+...+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .+++.+ 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                               345666666666666666666666666666666665 6666666666666666 666666 


Q ss_pred             cccccCcccccCCCcccEEecCCCcc
Q psy10487        188 RLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       188 ~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      .++.+...+|..+.+|+.+++.+|.+
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCcc
Confidence            56666666666666666666655543

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.47  E-value=2.2e-13  Score=113.94  Aligned_cols=85  Identities=25%  Similarity=0.380  Sum_probs=68.2

Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI  352 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  352 (610)
                      ..|+.+.|.|.+.|.|.|.++|+++|..+....+........ ......+.|.|.+++.+|+|.|+|.|.|..|.+++++
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEec-CCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            457789999999999999999999999988765421211111 0113456899999999999999999999999999999


Q ss_pred             EEEcCc
Q psy10487        353 SLDLPE  358 (610)
Q Consensus       353 ~L~V~~  358 (610)
                      .|.|.+
T Consensus        93 ~l~V~~   98 (103)
T 1wwb_X           93 SAHFMG   98 (103)
T ss_dssp             EECCSC
T ss_pred             EEEECC
Confidence            999854

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.47  E-value=5.2e-14  Score=160.73  Aligned_cols=219  Identities=11%  Similarity=0.028  Sum_probs=79.3

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeec-ceEeecCceEEEEEEEEe--cCCCeEEEEeCCEEeccCCc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKES-MVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSF  306 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~-~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g~~l~~~~~  306 (610)
                      .+.+.|+|.+.+................ -++.+...+. ...+.+|+.++|.|.+.|  .|.+.+.|++++..+.....
T Consensus       193 ~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~  272 (772)
T 3v2a_R          193 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL  272 (772)
T ss_dssp             TTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------C
T ss_pred             hhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCcee
Confidence            3567899987643221111111111111 1244445444 468899999999999998  55678999999887654332


Q ss_pred             cceeecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHH
Q psy10487        307 DLLEEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVS  384 (610)
Q Consensus       307 ~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~  384 (610)
                      .......  +.......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.+.............+..+..+.+.|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C  352 (772)
T 3v2a_R          273 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA  352 (772)
T ss_dssp             EEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------
T ss_pred             eeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEE
Confidence            1111100  00122455789999999999999999999999988888888885432111111111222333333444455


Q ss_pred             HHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceee--eeeccccc
Q psy10487        385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLAME  459 (610)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v~~  459 (610)
                      .+.+.+...+.|.+.+.....         ... ......|.|.+++.+|+|.|+|.|.|..|....  ...+.|..
T Consensus       353 ~~~~~p~~~v~W~~~g~~l~~---------~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~  419 (772)
T 3v2a_R          353 KYLGYPPPEIKWYKNGIPLES---------NHT-IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV  419 (772)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             EEeeeCCCeEEEEECCEeCCC---------Cce-EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec
Confidence            444433323333222211110         001 113468999999999999999999999987654  34444543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8e-14  Score=117.97  Aligned_cols=100  Identities=27%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+    ....|.|.+++.+|+|.|+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD----GTCSLHTTASTLDDDGNYT   82 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTT----CEEEEEESSCCTTTCSCCE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCC----cEEEEEECCCChhhCEEEE
Confidence            468888888889999999999999999999999999999988875432222222111    1237999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLA  362 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~  362 (610)
                      |.|.|..|.....+.|.|.+...+
T Consensus        83 C~a~N~~g~~~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           83 IMAANPQGRISCTGRLMVQAVNSG  106 (110)
T ss_dssp             EEEECTTCCEEECCCEEEECCSCC
T ss_pred             EEEEECCCeEEEEEEEEEECCCCC
Confidence            999999999999999988654433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.47  E-value=1.7e-13  Score=130.22  Aligned_cols=170  Identities=15%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEe---ccCCccceeeccCCceee---eeeEEEEEecCCCCCeEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |..+.+.+|++++|.|.+.|.|.|.|.|+++  |..+   ............++....   ....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            7778899999999999999999999999984  2221   000000000000110111   1248999999999999999


Q ss_pred             EEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cccccccCCcc
Q psy10487        339 CYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NKRRKRKGKMK  413 (610)
Q Consensus       339 C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~  413 (610)
                      |.|.|..|... ..+.|.|.....+|.+...+.....           ..+. .+...|...+. +   ...|.+.+..-
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~l~C~~~g~~p~~~~v~W~k~g~~~  154 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQ-----------LATG-GASVVCLMNNFYPRDISVKWKIDGTER  154 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HTTT-EEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhh-----------ccCC-cEEEEEEEEeEeCCceEEEEEeCCccC
Confidence            99999887543 3446666543333433322211100           0111 12334444331 2   22343322210


Q ss_pred             c-c------cccccc-----ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        414 Q-S------VSFNDQ-----EKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       414 ~-~------~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      . .      .....+     ...|.|..+..+|+|.|+|.|.|....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          155 RDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            0 0      000111     126889999999999999999997664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=1.6e-13  Score=141.57  Aligned_cols=152  Identities=16%  Similarity=0.217  Sum_probs=131.6

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCC-CCCCcccccCCCCCcE-EE
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI-AWLHQDTFLGNDRLKV-LY  135 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l-~~l~~~~f~~l~~L~~-L~  135 (610)
                      ++++.++++++.++....     .+|++|+|++|+|+.+++++|.++++|++|+|++|++ +.++...|.++++|+. +.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~-----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC-----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCccCcCcC-----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            468899999999986543     4899999999999999999999999999999999998 4577888999998775 66


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCC-cccEEecCCCcc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTP-NLKTLSLDGNPW  213 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~l~l~~N~~  213 (610)
                      +.+|+++.+.+..|..+++|+.|++++|+|..+.+..+....++..|++.+ +.+..++...|..+. .++.|++++|.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            778999999999999999999999999999999877776777788888865 688888887777764 578899999987


Q ss_pred             c
Q psy10487        214 C  214 (610)
Q Consensus       214 ~  214 (610)
                      .
T Consensus       167 ~  167 (350)
T 4ay9_X          167 Q  167 (350)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.46  E-value=2.5e-13  Score=112.30  Aligned_cols=93  Identities=20%  Similarity=0.399  Sum_probs=77.6

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+.......+      ...|.|.+++.+|+|.|+
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~   78 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG------GFFLEIHKTDTSDSGLYT   78 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCC------EEEEEECCCCcccCEEEE
Confidence            35778888888999999999999999999999999999999887654322221111      237999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.|.|..|.....+.|.|.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           79 CTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcEeEEEEEEEE
Confidence            9999999999999998874

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.46  E-value=4.8e-15  Score=150.18  Aligned_cols=167  Identities=13%  Similarity=0.113  Sum_probs=100.0

Q ss_pred             cceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+.+|+.+.|.|.+.|.| .|.+.|+|++..+......      ........+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ------ASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY   86 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCT------TSSSEECSSBEECTTCCGGGCSCCEECCCSSSC
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcccccc------CCcEeccCCeEEECCCChhhCEEEEEEEeCCce
Confidence            356788999999999999988 8899999998653221110      000112234899999999999999999999999


Q ss_pred             ceeEEEEEEcCccccccccccCCc---ceeehhhhHHHHHHHH------HhheeEEEEEEeeecccccccccCCcccccc
Q psy10487        347 NASGEISLDLPEINLATTLSKTDS---WYMLVLGISVCVVSVI------VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS  417 (610)
Q Consensus       347 ~~~~~~~L~V~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (610)
                      .....+.+.+.  ..+|.+...+.   ...+..+..+.+.|.+      .+.+...+.|.+...+.        ......
T Consensus        87 ~~~~~~~v~v~--~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l--------~~~~~~  156 (315)
T 1itb_B           87 CLRIKISAKFV--ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL--------LLDNIH  156 (315)
T ss_dssp             CCCEECCCEEE--CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEEC--------CCCSSS
T ss_pred             EEEEEEEEEEe--CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEEC--------CCccce
Confidence            87776666652  22222211111   1111111111111111      11121122222211110        001112


Q ss_pred             ccccccceeeeeeeeccCcceeeeec-CCCccee
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEAL-GSQPDME  450 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~-N~~G~~~  450 (610)
                      ....++.|.|.+++.+|+|.|+|.|. |..|...
T Consensus       157 ~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~  190 (315)
T 1itb_B          157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY  190 (315)
T ss_dssp             EEEETTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             EeecCceEEEEeceehhCcEEEEEEEcCCCCcEE
Confidence            33456689999999999999999999 7888763

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.46  E-value=3.3e-13  Score=143.47  Aligned_cols=208  Identities=13%  Similarity=0.070  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|.|.+.+... ..-........   .-+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++++..+....
T Consensus        88 ~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~  166 (434)
T 1igy_B           88 DDSAVYYCVREGEVP-YWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  166 (434)
T ss_dssp             GGCSEECCCCSSSSC-CCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEE
T ss_pred             HHCEEEEEEEEcccc-ccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEe
Confidence            477899999876421 11111111111   134666544434456789999999999987 777 999999987532111


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc---------cccccc-ccCCcceeeh
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI---------NLATTL-SKTDSWYMLV  375 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~---------~~~p~~-~~~~~~~~~~  375 (610)
                      .. .....  +.+...+.|.|.+++.+| |.|+|.|.|..|.......+.+...         ...|.+ ...+...   
T Consensus       167 ~~-~~~~~--~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~---  239 (434)
T 1igy_B          167 FP-AVLQS--DLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK---  239 (434)
T ss_dssp             CC-CEECS--SCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH---
T ss_pred             cC-ceecC--CcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChH---
Confidence            10 01111  233445789999999999 9999999999998655555543210         000111 1111100   


Q ss_pred             hhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCcccccc---------cc----ccccceeeeeeeeccCccee
Q psy10487        376 LGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKMKQSVS---------FN----DQEKKLLDVSITTTDRHTGS  439 (610)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~----~~~~~L~i~~v~~~D~G~Y~  439 (610)
                              ..+.....+.+.|...+.+   ......|.+.+..+.         ..    .....|.|.++..+|+|.|+
T Consensus       240 --------~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  311 (434)
T 1igy_B          240 --------DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFK  311 (434)
T ss_dssp             --------HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCB
T ss_pred             --------HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEE
Confidence                    0011122224455544432   111223333222211         00    12346899999999999999


Q ss_pred             eeecCCCcceeeeee
Q psy10487        440 CEALGSQPDMELIEQ  454 (610)
Q Consensus       440 C~A~N~~G~~~~~~~  454 (610)
                      |.|.|..|.......
T Consensus       312 C~a~n~~~~~~~~~~  326 (434)
T 1igy_B          312 CRVNSAAFPAPIEKT  326 (434)
T ss_dssp             CCBCCSSCSSCCCCC
T ss_pred             EEEECCCCCCceeEE
Confidence            999999997544333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.46  E-value=1.1e-13  Score=120.61  Aligned_cols=111  Identities=28%  Similarity=0.574  Sum_probs=89.9

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCC--ccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhh
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFT--ALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT  100 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~--~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~  100 (610)
                      +||..|.|.    ...|+|++++|+  ++|..++.+++.|+|++|+|+.++.+.|.  .+.+|+.               
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~---------------   59 (130)
T 3rfe_A            1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRT---------------   59 (130)
T ss_dssp             CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCE---------------
T ss_pred             CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCE---------------
Confidence            599999997    369999999999  99988888888888888877777655544  2222221               


Q ss_pred             hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE  180 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (610)
                                                                                                      
T Consensus        60 --------------------------------------------------------------------------------   59 (130)
T 3rfe_A           60 --------------------------------------------------------------------------------   59 (130)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCccccccccccc
Q psy10487        181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKHWDDVKAQEFA  258 (610)
Q Consensus       181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~~~~v~~~~~~  258 (610)
                                               |+|.+|+|.|||.+.||..|+....  .....++|..|..+.|+.+.++...++.
T Consensus        60 -------------------------L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~l~  114 (130)
T 3rfe_A           60 -------------------------AHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELR  114 (130)
T ss_dssp             -------------------------EECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHHHH
T ss_pred             -------------------------EEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHHhh
Confidence                                     4788999999999999999998653  3456789999999999999999988887


Q ss_pred             C
Q psy10487        259 C  259 (610)
Q Consensus       259 c  259 (610)
                      |
T Consensus       115 c  115 (130)
T 3rfe_A          115 A  115 (130)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=9.7e-14  Score=119.12  Aligned_cols=93  Identities=24%  Similarity=0.410  Sum_probs=78.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+.........        ...+.|.|.+++.+|+|.|+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~   78 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--------LENGVLQIRYAKLGDTGRYT   78 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE--------EETTEEEEESCCGGGCCCEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE--------ccCCEEEEccCCcCCCEEEE
Confidence            5788888888899999999999999999999999999999887643322211        22348999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcc
Q psy10487        339 CYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      |.|.|..|.....+.|.|.+.
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~   99 (118)
T 2eo9_A           79 CIASTPSGEATWSAYIEVQEF   99 (118)
T ss_dssp             EEEECSSCEEEEECCEEEECC
T ss_pred             EEEEcCCCcEEEEEEEEEEeC
Confidence            999999999998888888543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.45  E-value=2.8e-13  Score=138.04  Aligned_cols=178  Identities=18%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             CCCceeeeecceEeecC--ceEEEEEEEEec-C-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        259 CPPNVTIKESMVIREAG--GNVTMSCYVYGD-P-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G--~~v~l~C~~~g~-P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      .+|.+.+.+.......|  +.++|.|.+.|. | .+.|+|+|+|..+............ ++.+...+.|.|..+..+|+
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~   84 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSD   84 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCC
Confidence            35777766544333344  699999999986 4 4799999999988754321111111 23344556899999888999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCcccccccc-ccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec---c---ccccc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPEINLATTL-SKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH---K---NKRRK  407 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~  407 (610)
                      |.|+|+|.|..|.....+.+.+......|.+ ...+....           +..+. .+.+.|...+.   +   ...|.
T Consensus        85 g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~-----------v~~G~-~v~L~C~~~g~~P~p~~~~i~W~  152 (323)
T 2wqr_A           85 RTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFD-----------LFIRK-SPTITCLVVDLAPSKGTVQLTWS  152 (323)
T ss_dssp             CCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHH-----------HHTSS-CCEEEEEEEEECCCSSCCEEEEE
T ss_pred             CcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHH-----------hccCC-eEEEEEEEeccCCCCCceEEEEE
Confidence            9999999999887665544322111112211 11121111           11111 12334443332   1   23343


Q ss_pred             ccC-Ccccc-cc-----cc---ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        408 RKG-KMKQS-VS-----FN---DQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       408 ~~~-~~~~~-~~-----~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      +.. ..... ..     ..   ...+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus       153 k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             ETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence            321 10000 00     00   123469999999999999999999987543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.45  E-value=5.6e-13  Score=134.96  Aligned_cols=182  Identities=14%  Similarity=0.079  Sum_probs=100.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCC-----eEEEEeCCEEeccCC------------ccceeeccCCceeeeeeEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEP-----TILWLLNGQVLHNSS------------FDLLEEEEGDALFEKSVSIT  325 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p-----~v~W~~~g~~l~~~~------------~~~~~~~~~~~~~~~~~~L~  325 (610)
                      +...|..+.+..|++++|.|.+.+.|.+     .|.|+|++.......            .+..............++|+
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            3445677888999999999999998876     489999875322100            00000000000112335799


Q ss_pred             EEecCCCCCeEEEEEee-cCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee---ec
Q psy10487        326 LFNVTDLDAGEYTCYAE-NIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH---EH  401 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~-N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  401 (610)
                      |.+++.+|+|.|+|.|. +..|..+..+.|.|...   |..........+.....            ....|...   +.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~---P~~~~~~~~~~~~~~~~------------~~~~C~~~~~~P~  147 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK---PQNTAEVQKVQLTGEPV------------PMARCVSTGGRPP  147 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBC---CEEEEEECCBCCCSSCE------------EEEEEEEEEEBSC
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccC---CcceecccceEeecCce------------EEEEEEccCccCC
Confidence            99999999999999885 45667777888877432   22221111111111111            12222221   22


Q ss_pred             ccccccccCCcccc--cccc------ccccceeeeeeeeccCcceeeeecCCCcceee--eeeccccc
Q psy10487        402 KNKRRKRKGKMKQS--VSFN------DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLAME  459 (610)
Q Consensus       402 ~~~~~~~~~~~~~~--~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v~~  459 (610)
                      +...|.+....-..  ....      .....|.|..+..+|.|.|+|.|.|..|....  ...|.|..
T Consensus       148 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~  215 (313)
T 4fqp_A          148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY  215 (313)
T ss_dssp             CEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE
T ss_pred             cEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc
Confidence            22223222111000  0000      11234778888888999999999998776544  34555544

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.45  E-value=1.2e-13  Score=127.18  Aligned_cols=162  Identities=17%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee-ec--cCCcee-eeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-EE--EGDALF-EKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~-~~--~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..+.+.+|++++|.|.+.+ |.+.|.|++++..+......... ..  .++..+ ...+.|+|.+++.+|+|.|+|.|.|
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            3567889999999999854 89999999988755332111110 00  011011 1346899999999999999999999


Q ss_pred             CCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccccccc
Q psy10487        344 IRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEK  423 (610)
Q Consensus       344 ~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (610)
                      ..|  ...+.|.|.+....|.+......        .            ...|.....+.+ ...|.+.+..+.. ..  
T Consensus        82 ~~~--~~~~~L~V~~~~~~p~i~~~~~~--------~------------~L~C~~~~~p~p-~i~W~~~~~~l~~-~~--  135 (171)
T 1ccz_A           82 ITD--TMKFFLYVLEMVSKPMIYWECSN--------A------------TLTCEVLEGTDV-ELKLYQGKEHLRS-LR--  135 (171)
T ss_dssp             CCS--CEEEEEEEECCCCCCEEEEETTT--------T------------EEEEECSSCSSC-EEEEEETTEEEEE-ES--
T ss_pred             CCC--cEEEEEEEECcCCCCEEEEecCC--------c------------EEEEEeCCCCCc-EEEEEECCEECcC-Cc--
Confidence            988  67777877544333333221110        0            123433332221 1223222222211 11  


Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+.+......|.|.|+|+|.|..|..+..+.+.
T Consensus       136 ~~~l~~~~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          136 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             SSEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             ceEEEEeccCCCceEEEEEEcccCcccceeEEe
Confidence            122222235688999999999999987766653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.45  E-value=2.2e-14  Score=143.42  Aligned_cols=172  Identities=13%  Similarity=0.070  Sum_probs=103.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.|...+..+.+.+|++++|.|.+.|.    +.|++++....      .....     ...+.|.|.+++.+|+|.|+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~------~~~~~-----~~~~~L~i~~~~~~d~G~Y~   67 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW------TLYSD-----GSSSILSTNNATFQNTGTYR   67 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC------EECCB-----TTEEEEEESSCCGGGCSCEE
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce------EEecc-----CceEEEEEcccccccCEEEE
Confidence            36888888888999999999999999884    99997653211      01001     12358999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-c--ccccccccCC---c
Q psy10487        339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-H--KNKRRKRKGK---M  412 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~---~  412 (610)
                      |.|.|..|..+..+.|.|......  +...+....+..+..+            .+.|.... .  +...|.+...   .
T Consensus        68 C~~~n~~~~~~~~~~l~V~~~~~~--~~~~~~~~~v~~g~~v------------~l~C~~~~~~~~~~v~W~~~~~~~~~  133 (292)
T 4dkd_C           68 CTEPGDPLGGSAAIHLYVKDPARP--WNVLAQEVVVFEDQDA------------LLPCLLTDPVLEAGVSLVRVRGRPLM  133 (292)
T ss_dssp             ECCCC----CCEEECCEECCSSCC--EEESCSEEEEETTSCE------------ECCEEESSGGGGSSEEEEEGGGCCCC
T ss_pred             EEEccCCCCcceEEEEEEcCcccc--ccccCCeEEEcCCCcE------------EEeeeCCCCCcceeEEEEecCCCccc
Confidence            999999998888998888643222  1212222222222221            11222221 1  1112211100   0


Q ss_pred             cccccccccccceeeeeeeeccCcceeeeecCCCcceee-eeeccccc
Q psy10487        413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAME  459 (610)
Q Consensus       413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~  459 (610)
                      .........++.|.|.+++.+|+|.|+|.|.|..|.... ...|.|..
T Consensus       134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          134 RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            111111233445999999999999999999998886543 55665554

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=2.6e-13  Score=116.85  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEec---CCCeEEEEeCCEE-ecc--CCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQV-LHN--SSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~~g~~-l~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.|...|..+.+.+|++++|.|.+.|.   |.|.|.|+|++.. +..  ..+.+......+........|+|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            556777889999999999999999875   8999999997421 111  1111110000000112356999999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCc-cccccccc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPE-INLATTLS  366 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~-~~~~p~~~  366 (610)
                      |.|+|+|.|..|..++++.|.|.+ +...|.+.
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~  120 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID  120 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCCSCCCCC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEE
Confidence            999999999999999999999976 44444443

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.45  E-value=3.2e-13  Score=116.12  Aligned_cols=86  Identities=29%  Similarity=0.375  Sum_probs=69.2

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCC-ceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD-ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI  352 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  352 (610)
                      .+..+.|.|.+.|+|.|+|+|+|||..+....+.+....... ......+.|.|.+++..|+|.|+|+|.|.+|.+++++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            567899999999999999999999999987765433322210 0012357899999999999999999999999999999


Q ss_pred             EEEcCcc
Q psy10487        353 SLDLPEI  359 (610)
Q Consensus       353 ~L~V~~~  359 (610)
                      .|.|...
T Consensus        94 ~l~v~~~  100 (126)
T 1he7_A           94 MAAFMDN  100 (126)
T ss_dssp             EECCCSC
T ss_pred             EEEEEcC
Confidence            9988543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.45  E-value=3e-13  Score=133.02  Aligned_cols=163  Identities=12%  Similarity=0.079  Sum_probs=98.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......... ..    ....+.|.|.+++.+|+|.|+|
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~-~~----~~~~~~L~I~~v~~~DsG~Y~C   79 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEH-HD----GVSKANFSIGPMMQDLAGTYRC   79 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBC-CT----TCEEEEEEECSCCTTTCEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeec-cC----CCceEEEEeecCCcccCEEEEE
Confidence            566766665 67889999999999975 57899999988654321110000 00    0234689999999999999999


Q ss_pred             EeecCCc-----ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487        340 YAENIRG-----NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ  414 (610)
Q Consensus       340 ~a~N~~G-----~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (610)
                      .|.|..+     ..+..+.|.|.+....|.+...+......+ ..            +...|.....+.  +..|.+++.
T Consensus        80 ~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G-~~------------vtL~C~~~~~~~--~~~w~k~g~  144 (257)
T 1b6u_A           80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAG-ES------------VTLSCSSRSSYD--MYHLSREGE  144 (257)
T ss_dssp             EEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTT-CE------------EEEEEECSSCCS--EEEEEETTS
T ss_pred             eEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCC-CE------------EEEEEeCCCCCc--EEEEEECCc
Confidence            9987532     235667788865555555544443222111 11            123333322211  111222211


Q ss_pred             ccc---------ccccccceeeeeeeeccCcceeeeecCCC
Q psy10487        415 SVS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       415 ~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      .+.         ....+..|.|.+|+  |+|.|+|.|.|..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence            111         01235689999998  9999999999864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=6.1e-14  Score=118.63  Aligned_cols=99  Identities=27%  Similarity=0.375  Sum_probs=81.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............     ....|.|.+++.+|+|.|+
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN-----GVHSLIIEPVTSRDAGIYT   82 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTT-----SCEEEEESSCCGGGCSBBC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecC-----CeEEEEEeeCCcccCEEEE
Confidence            47888888899999999999999999999999999999998877654332222211     1248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLA  362 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~  362 (610)
                      |.|.|..|..+..+.|.|...+.+
T Consensus        83 C~a~n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           83 CIATNRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             EEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEECCCCEEEEEEEEEEeCCCCC
Confidence            999999999999999998654443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=7.2e-13  Score=141.55  Aligned_cols=164  Identities=21%  Similarity=0.288  Sum_probs=122.5

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhh--hccc-----------C-CCCccEEEcccCCCcccchhhhc
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEA--FKSI-----------G-LLNLQRIYLKNSGIREVHRDTFK  102 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~--~~~~-----------~-l~~L~~L~L~~n~l~~i~~~~f~  102 (610)
                      +.+++.+++++.+|. ++.++++|+|++|.++.++...  ++.+           . ..+|++|++++|.+..++  +|+
T Consensus        74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~~  150 (454)
T 1jl5_A           74 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--ELQ  150 (454)
T ss_dssp             SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CCT
T ss_pred             CEEEecCCccccCCC-CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--ccC
Confidence            455555555555553 4455555555555554443211  0000           1 258999999999999976  499


Q ss_pred             CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      .+++|++|++++|++..++..    ..+|++|+|++|.++.++  .|.++++|+.|++++|+++.++.    ...+|+.|
T Consensus       151 ~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L  220 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESI  220 (454)
T ss_dssp             TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEE
T ss_pred             CCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEE
Confidence            999999999999999987642    358999999999999975  48899999999999999988643    23589999


Q ss_pred             ccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      ++++|.++.++.  +..+++|+.|++++|.+..
T Consensus       221 ~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          221 VAGNNILEELPE--LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             ECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred             ECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence            999999998773  7788999999999998764

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.45  E-value=1e-13  Score=128.90  Aligned_cols=165  Identities=12%  Similarity=0.083  Sum_probs=99.2

Q ss_pred             ecceEeecCceEEEEEEEE--ecCCCeEEEEe--CCEEeccCCccce-eeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        267 ESMVIREAGGNVTMSCYVY--GDPEPTILWLL--NGQVLHNSSFDLL-EEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~--g~P~p~v~W~~--~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      ...+...+|++++|.|...  +.|.+.|.|++  ++..+........ ....++..+..+++|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            3456788999999999543  35678999999  8877632211100 01112222234469999999999999999999


Q ss_pred             ecCCccee--EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487        342 ENIRGNAS--GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN  419 (610)
Q Consensus       342 ~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (610)
                      .|..|...  ..+.|.|.+....|.+.....        .            +...|.....+.. ...|.+.+..+  .
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~--------~------------v~L~C~~~~~p~~-~~~W~~~g~~l--~  142 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVSKPKISWTCI--------N------------TTLTCEVMNGTDP-ELNLYQDGKHL--K  142 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCCCCEEEEETT--------T------------TEEEEECSSCSSC-EEEEEESSCEE--E
T ss_pred             EeCCCceeEEEEEEEEEcCcCCCCEEEEccC--------c------------EEEEeEccCCCCC-EEEEEECCEEC--C
Confidence            99998753  567787754433443332111        0            1334443333221 12333333322  1


Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .....+.+ ....+|+|.|+|+|.|..|.......+
T Consensus       143 ~~~~~i~~-~~~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          143 LSQRVITH-KWTTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EESSCEEE-ECCSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCcEEEE-ecccCCCcEEEEEEEeCCCCcEEccee
Confidence            12222322 334679999999999999987775544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=7.7e-13  Score=141.33  Aligned_cols=158  Identities=22%  Similarity=0.278  Sum_probs=130.1

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ  116 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~  116 (610)
                      +.+++.+++++.+| .++.+|++|+|++|.|+.++  .|.  ++++|++|++++|.+..++.    ...+|++|++++|+
T Consensus       114 ~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~  184 (454)
T 1jl5_A          114 KSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ  184 (454)
T ss_dssp             CEEECCSSCCSCCC-SCCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred             cEEECCCCccCccc-CCCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCC----CcccccEEECcCCc
Confidence            45666666666665 34568888999999888877  366  78999999999999998763    23589999999999


Q ss_pred             CCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCccc
Q psy10487        117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESV  196 (610)
Q Consensus       117 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  196 (610)
                      +..++  .|.++++|+.|++++|.++.++..    ..+|+.|++++|++..++  .+..+++|+.|++++|++++++.  
T Consensus       185 l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~--  254 (454)
T 1jl5_A          185 LEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD--  254 (454)
T ss_dssp             CSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS--
T ss_pred             CCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc--
Confidence            99986  489999999999999999987542    258999999999999875  38899999999999999998765  


Q ss_pred             ccCCCcccEEecCCCcccc
Q psy10487        197 FFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       197 ~~~~~~L~~l~l~~N~~~c  215 (610)
                        .+.+|+.|++++|.+..
T Consensus       255 --~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          255 --LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             --CCTTCCEEECCSSCCSC
T ss_pred             --cccccCEEECCCCcccc
Confidence              24689999999998753

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.45  E-value=5.5e-14  Score=135.97  Aligned_cols=178  Identities=13%  Similarity=0.113  Sum_probs=100.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccCCccceeeccCCcee---eeeeEEEEEecCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTD  331 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~  331 (610)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|..  ..   +............++...   .....|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            455666678889999999999999999999999999832  11   110000000000011011   1245899999999


Q ss_pred             CCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----ccccc
Q psy10487        332 LDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRR  406 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  406 (610)
                      +|+|.|+|.|.|..|.. ...+.|.|.....+|.+..........           .+.. +...|...+.    +...|
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~-----------~g~~-v~l~C~~~~~~p~~~~v~W  171 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQL-----------KSGT-ASVVCLLNNFYPREAKVQW  171 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHH-----------HHTE-EEEEEEEEEEBSSCCEEEE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhc-----------cCCc-eEEEEEEcccCCCceEEEE
Confidence            99999999999987642 334566664333344433221111100           1111 2334443331    23334


Q ss_pred             cccCCcccc------cccccc------ccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        407 KRKGKMKQS------VSFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       407 ~~~~~~~~~------~~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      .+.+..-..      ......      ...|.+..+..+|.|.|+|.|.|.....
T Consensus       172 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          172 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             EECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            332211110      000111      2346677777789999999999987653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.44  E-value=8.8e-13  Score=145.65  Aligned_cols=160  Identities=21%  Similarity=0.233  Sum_probs=95.2

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcc---------------cCCCCccEEEcccCCCcccchhhh
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS---------------IGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~---------------~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      +.++..+++++.+|..+ .+|++|+|++|.|+.++.. +..               ..+++|+.|+|++|.|..++.   
T Consensus       124 ~~L~L~~N~l~~lp~~l-~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~---  198 (622)
T 3g06_A          124 CKLWIFGNQLTSLPVLP-PGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT---  198 (622)
T ss_dssp             CEEECCSSCCSCCCCCC-TTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---
T ss_pred             CEEECCCCCCCcCCCCC-CCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC---
Confidence            44555555555555432 4566666666666554421 100               011334444444444443332   


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                       .+.+|+.|++++|+|..++.    .+++|+.|+|++|.++.++    ..+++|+.|+|++|+|+.++.    .+.+|+.
T Consensus       199 -~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~  265 (622)
T 3g06_A          199 -LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLS  265 (622)
T ss_dssp             -CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred             -ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcE
Confidence             12344444444444444432    2366777777777777765    345778888888888887754    4577888


Q ss_pred             cccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487        182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      |+|++|+|+.++. .+..+++|+.|++++|++..
T Consensus       266 L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          266 LSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             EECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCH
T ss_pred             EeCCCCCCCcCCH-HHhhccccCEEEecCCCCCC
Confidence            8888888887754 46778888888888888764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=5.2e-13  Score=114.53  Aligned_cols=96  Identities=21%  Similarity=0.368  Sum_probs=76.0

Q ss_pred             cccCCCceeee---ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCC
Q psy10487        256 EFACPPNVTIK---ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       256 ~~~c~P~i~~~---~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      +...+|.+...   +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... +......      ...+.|.|.+++.+
T Consensus        17 ~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~------~~~~~L~i~~~~~~   89 (118)
T 2e7c_A           17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTS------DFDTVFFVRQAARS   89 (118)
T ss_dssp             CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCS-SCEEEEC------SSEEEEEESSCCTT
T ss_pred             eeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCC-cEEEEEC------CCeEEEEECCCChh
Confidence            33456777543   46788899999999999999999999999999988632 2111111      12347999999999


Q ss_pred             CCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        333 DAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |+|.|+|.|.|..|..+..+.|.|.+
T Consensus        90 D~G~Y~C~a~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           90 DSGEYELSVQIENMKDTATIRIRVVE  115 (118)
T ss_dssp             TCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred             cCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            99999999999999999999998843

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=1.8e-13  Score=139.89  Aligned_cols=103  Identities=19%  Similarity=0.250  Sum_probs=97.8

Q ss_pred             CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc-EEEccCccccccCHHHhhcCcccccc
Q psy10487        104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK-TIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      +.+|++|+|++|++..++...|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|++.+ +++.+...+|.++.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999999999999999999999999998 9999999999999999 999998 8999999999999999999


Q ss_pred             ccccccccccCcccccCCCcccEEec
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSL  208 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l  208 (610)
                      +++.|.++.+...+|..+++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999998863

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.44  E-value=5.4e-14  Score=133.83  Aligned_cols=106  Identities=18%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC---EE--eccCCccceeeccCCcee---eeeeEEEEEecCCC
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG---QV--LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDL  332 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g---~~--l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~  332 (610)
                      |.+...+..+.+.+|++++|.|.+.|.|.+.+.|+|..   ..  +............++...   .....|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            45666678889999999999999999999999999832   11  110000000000001011   12348999999999


Q ss_pred             CCeEEEEEeecCCcc-eeEEEEEEcCccccccccc
Q psy10487        333 DAGEYTCYAENIRGN-ASGEISLDLPEINLATTLS  366 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~-~~~~~~L~V~~~~~~p~~~  366 (610)
                      |+|.|+|.|.|..|. ....+.|.|.....+|.+.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~  116 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVS  116 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceee
Confidence            999999999998764 3345667774444444443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.44  E-value=1.1e-13  Score=116.48  Aligned_cols=94  Identities=26%  Similarity=0.416  Sum_probs=68.5

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+..........        ..+.|.|.+++.+|+|.|+
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~   80 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--------GNRNLTIRRVRKEDEGLYT   80 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--------TTTEEEECSCCGGGCEEEE
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--------CCcEEEEeecCcccCEEEE
Confidence            46788888888999999999999999999999999999998876544322111        1248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccc
Q psy10487        339 CYAENIRGNASGEISLDLPEIN  360 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~  360 (610)
                      |.|.|..|.....+.|.|...+
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           81 CQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEC----CEEEEEEEEEEC--
T ss_pred             EEEEeCCCceEEEEEEEEeCCC
Confidence            9999999999999999985443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.43  E-value=3.3e-13  Score=131.68  Aligned_cols=93  Identities=12%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe--c--cCC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL--H--NSS--FDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l--~--~~~--~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.|.|+|+.  ...  .  ...  ......  ..++....     ...+|+|.+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS   87 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence            34568899999999999999987  6889999842  111  0  000  000000  00010111     134799999


Q ss_pred             cCCCCCeEEEEEeecCCcc--eeEEEEEEcCc
Q psy10487        329 VTDLDAGEYTCYAENIRGN--ASGEISLDLPE  358 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~--~~~~~~L~V~~  358 (610)
                      ++.+|+|.|+|.|.|..+.  ....+.|.|..
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~  119 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSS  119 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECS
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEec
Confidence            9999999999999998443  23445677753

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.43  E-value=1.6e-13  Score=134.09  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCCe-----EEEEeCCEEeccC-------CccceeeccCC-----ceeeeeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPT-----ILWLLNGQVLHNS-------SFDLLEEEEGD-----ALFEKSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~-----v~W~~~g~~l~~~-------~~~~~~~~~~~-----~~~~~~~~L~I~~v  329 (610)
                      +..+.+.+|++++|.|.+.|.|.+.     |.|++++......       ...........     ........|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            4566888999999999999999886     9999963221100       00000000000     00012346999999


Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee---cc-ccc
Q psy10487        330 TDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---HK-NKR  405 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~  405 (610)
                      +.+|+|.|+|.+.|..|.....+.|.|..   +|.+...+......+.           ..  ...|...+   .+ ...
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~---~P~v~~~~~~~~~~~~-----------~~--~L~C~~~g~~P~pi~v~  153 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA---SPASRLLLDQVGMKEN-----------ED--KYMCESSGFYPEAINIT  153 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB---CCEEEEECC-------------------C--EEEEEEEEEBSSCCEEE
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEec---CCceEEecCCccccCC-----------Cc--EEEEEEccEECCCeEEE
Confidence            99999999999999999888888888853   3333222221111111           11  12333332   22 233


Q ss_pred             ccccCCcc------------cccccc-----ccccceeeeeeeeccCcceeeeecCCCcceee--eeeccc
Q psy10487        406 RKRKGKMK------------QSVSFN-----DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLA  457 (610)
Q Consensus       406 ~~~~~~~~------------~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v  457 (610)
                      |.+.+..-            ......     .....|.+.....+|.|.|+|.|.|..+....  ...|.|
T Consensus       154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          154 WEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            33322100            000000     11235777778888999999999999887433  444444

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.43  E-value=2.7e-13  Score=136.84  Aligned_cols=180  Identities=15%  Similarity=0.096  Sum_probs=98.6

Q ss_pred             cceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccC------CccceeeccCCce------eeeeeEEEEEecCCCCC
Q psy10487        268 SMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNS------SFDLLEEEEGDAL------FEKSVSITLFNVTDLDA  334 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~------~~~~~~~~~~~~~------~~~~~~L~I~~v~~~D~  334 (610)
                      ..+++.+|++++|.|.+.+. |.+.|.|+|++......      ...........+.      ....++|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            35678899999999998754 55679999964322110      0000000000000      01235799999999999


Q ss_pred             eEEEEEeecC-CcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe---eecccccccccC
Q psy10487        335 GEYTCYAENI-RGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA---HEHKNKRRKRKG  410 (610)
Q Consensus       335 G~Y~C~a~N~-~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  410 (610)
                      |.|+|.|.|. .|.....+.+.+......+.+..... .....+.            .+.+.|..   .+.+...|.+..
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~------------~~~l~C~~~~g~P~~~i~W~~~~  153 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDS-LIDGGNE------------TVAAICIAATGKPVAHIDWEGDL  153 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSC-CCTTCSC------------EEEEEEEEEEEBSCCEEEECCCS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccce-eEEcCCc------------eEEEEEEecCCcCCceEEEEECC
Confidence            9999999886 56667777776643322222222111 1111110            11233332   222333333322


Q ss_pred             Cccccc--c----ccccccceeeeeeeeccCcceeeeecCCCcceeee--eecccccC
Q psy10487        411 KMKQSV--S----FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI--EQSLAMEQ  460 (610)
Q Consensus       411 ~~~~~~--~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~v~~~  460 (610)
                      ..-...  .    .......|.|..+..+|.|.|+|.|.|..|.....  ..|.|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~  211 (308)
T 4fom_A          154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYA  211 (308)
T ss_dssp             SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEE
T ss_pred             cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecC
Confidence            111100  0    01122368889999999999999999988765444  44545443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.43  E-value=7.5e-13  Score=126.57  Aligned_cols=178  Identities=12%  Similarity=0.140  Sum_probs=96.7

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEecc----C--Cccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHN----S--SFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~----~--~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|+  +..+..    .  ........  .++....     ..+.|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            45667889999999999999876  789999996  332210    0  00000000  0111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCcc----eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee---
Q psy10487        329 VTDLDAGEYTCYAENIRGN----ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---  400 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~----~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  400 (610)
                      ++.+|+|.|+|.|.|..|.    ....+.|.|... ..+|.+........+..+.            .+.+.|...+   
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~------------~v~L~C~~~g~~P  153 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNS------------MVTLGCLVKGYFP  153 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSS------------EEEEEEEEEEEBS
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCC------------eEEEEEEcccccC
Confidence            9999999999999998742    223566777542 1223332211111111111            1233444433   


Q ss_pred             cc-cccccccCCccccccc----c----ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        401 HK-NKRRKRKGKMKQSVSF----N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       401 ~~-~~~~~~~~~~~~~~~~----~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+ ...|.+.+........    .    .....|.| .....|.|.|+|.|.|..|.......+.
T Consensus       154 ~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          154 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PSSPRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             CCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEE-ecccCCCCEEEEEEEeCCCCccEEEecC
Confidence            33 3344433321000000    0    01125667 4444477999999999998866655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.43  E-value=5.9e-14  Score=145.59  Aligned_cols=160  Identities=19%  Similarity=0.274  Sum_probs=103.7

Q ss_pred             CCCccEEEeecCCCCCCCh----hhhcccCCC-CccEEEcccCCCcccchhhhcCC-----CCCcEEEccCCCCCCCCcc
Q psy10487         54 DSDIQVLDLNNNKISYLTK----EAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYL-----TILVEVDLSDNQIAWLHQD  123 (610)
Q Consensus        54 ~~~L~~L~L~~n~i~~l~~----~~~~~~~l~-~L~~L~L~~n~l~~i~~~~f~~l-----~~L~~LdLs~n~l~~l~~~  123 (610)
                      +.+|++|+|++|.|+.+..    ..|.  +++ +|++|+|++|.|.......|..+     ++|++|+|++|+|......
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            4467777777777777776    5555  566 77777777777777666666554     7777777777777766654


Q ss_pred             c----ccCC-CCCcEEEeeCccccccCcCc----CCC-CCCccEEEccCccccccCHHH----hhcCc-ccccccccccc
Q psy10487        124 T----FLGN-DRLKVLYLNGNPITELRAGQ----FPK-LPYLKTIELQHCQIHSVHKDA----LIHLT-ALESLNLNGNR  188 (610)
Q Consensus       124 ~----f~~l-~~L~~L~Ls~N~l~~l~~~~----~~~-l~~L~~L~L~~n~l~~~~~~~----~~~l~-~L~~L~L~~n~  188 (610)
                      .    |..+ ++|+.|+|++|.++......    +.. ..+|+.|+|++|+|.......    +..+. +|+.|+|++|+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            3    3333 67777777777777665433    223 247777777777777544332    33444 77777777777


Q ss_pred             ccccCccc----ccCC-CcccEEecCCCcccc
Q psy10487        189 LKHLSESV----FFPT-PNLKTLSLDGNPWCC  215 (610)
Q Consensus       189 l~~~~~~~----~~~~-~~L~~l~l~~N~~~c  215 (610)
                      ++......    +..+ ++|+.|++++|.+.-
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            77665432    2233 477777777777653

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.43  E-value=3.1e-14  Score=135.34  Aligned_cols=177  Identities=12%  Similarity=0.057  Sum_probs=98.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCce---eeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~  334 (610)
                      +...+ .+.+.+|++++|.|.+.  |.+.+.|+++  +..+.   ...........++..   ......|.|.+++.+|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   80 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE   80 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence            33444 77889999999999998  9999999993  22211   000000000000000   01235899999999999


Q ss_pred             eEEEEEeecCCc--ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----cccccc
Q psy10487        335 GEYTCYAENIRG--NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRRK  407 (610)
Q Consensus       335 G~Y~C~a~N~~G--~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  407 (610)
                      |.|+|.|.|..|  .....+.|.|.... .+|.+...+......           .+. .+.+.|...+.    +...|.
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~-----------~g~-~v~l~C~~~g~~p~~~~v~W~  148 (211)
T 3tv3_L           81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEEL-----------QAN-KATLVCLISDFYPGAVTVAWK  148 (211)
T ss_dssp             EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHH-----------HTT-CEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhh-----------cCC-CeEEEEEeeeecCCCeEEEEE
Confidence            999999999988  45566777775322 233333222111111           111 11333433331    122333


Q ss_pred             ccCCcccc-----ccccc------cccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        408 RKGKMKQS-----VSFND------QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       408 ~~~~~~~~-----~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      +.+..-..     .....      ....|.|..+..+|+|.|+|.|.|..|..+..+.
T Consensus       149 k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          149 ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             ETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             ECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            22211000     00001      1135777888888999999999999987766554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.9e-13  Score=113.23  Aligned_cols=90  Identities=28%  Similarity=0.444  Sum_probs=76.1

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..+|.+...+....+.+|++++|.|.+.|.|.|.+.|++++..+.....   ...      ...+.|.|.+++.+|+|.|
T Consensus         9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~------~~~~~L~i~~v~~~D~G~Y   79 (99)
T 2yr3_A            9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCE------AGVAELHIQDALPEDHGTY   79 (99)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEE------TTEEEEEECSCCTTCCBCE
T ss_pred             ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---Eee------CCeEEEEECCCChhhCEEE
Confidence            3578888888899999999999999999999999999999987764432   111      1235899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.|..|..+.++.|.|
T Consensus        80 ~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           80 TCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEEECSSCEEEEECCEEE
T ss_pred             EEEEEECCCeEEEEEEEEE
Confidence            9999999999988888876

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.43  E-value=1.5e-13  Score=115.59  Aligned_cols=95  Identities=25%  Similarity=0.434  Sum_probs=79.7

Q ss_pred             ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       257 ~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      ...+|.|...+..+.+.+|++++|.|.+.|.|.|.+.|+++|..+....+.......      ..+.|.|.+++.+|+|.
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~   84 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK------YKSTFEISSVQASDEGN   84 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECS------SEEEEEECCCCSSCCSE
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC------CEEEEEECcCCchhCEE
Confidence            345788888999999999999999999999999999999999887655432222111      13589999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcC
Q psy10487        337 YTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      |+|.|.|..|..+.++.|.|.
T Consensus        85 Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           85 YSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EEECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEEEeCCCeEEEEEEEEEE
Confidence            999999999999999999873

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=8.3e-13  Score=108.85  Aligned_cols=90  Identities=24%  Similarity=0.357  Sum_probs=74.0

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      +...+..+.+.+|++++|.|.+.|. |.|.+.|++++..+....+.......+      ...|.|.+++.+|+|.|+|.|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG------VAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEEEEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCC------eEEEEEecCChhhCeEEEEEE
Confidence            3445678889999999999999997 999999999999887654432222111      248999999999999999999


Q ss_pred             ecCCcceeEEEEEEcCc
Q psy10487        342 ENIRGNASGEISLDLPE  358 (610)
Q Consensus       342 ~N~~G~~~~~~~L~V~~  358 (610)
                      .|..|....++.|.|.+
T Consensus        78 ~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ECSSCEEEEEEEEEETT
T ss_pred             ECCCCeEeEEEEEEEEe
Confidence            99999999999999854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=4.7e-14  Score=146.34  Aligned_cols=180  Identities=17%  Similarity=0.220  Sum_probs=137.7

Q ss_pred             CcEEEcCCCCCCccCc-----c---cCCCccEEEeecCCCCCCChhhhccc--C-CCCccEEEcccCCCcccchhhh---
Q psy10487         36 KKSALCKDANFTALPS-----T---LDSDIQVLDLNNNKISYLTKEAFKSI--G-LLNLQRIYLKNSGIREVHRDTF---  101 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-----~---l~~~L~~L~L~~n~i~~l~~~~~~~~--~-l~~L~~L~L~~n~l~~i~~~~f---  101 (610)
                      -+.++.++++++.++.     .   ++.+|++|+|++|.|+......|..+  . ..+|++|+|++|.+.......|   
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            3678889998888774     1   23489999999999998887776521  1 2899999999999998776644   


Q ss_pred             -cCC-CCCcEEEccCCCCCCCCcccc----cC-CCCCcEEEeeCccccccCcC----cCCCCC-CccEEEccCccccccC
Q psy10487        102 -KYL-TILVEVDLSDNQIAWLHQDTF----LG-NDRLKVLYLNGNPITELRAG----QFPKLP-YLKTIELQHCQIHSVH  169 (610)
Q Consensus       102 -~~l-~~L~~LdLs~n~l~~l~~~~f----~~-l~~L~~L~Ls~N~l~~l~~~----~~~~l~-~L~~L~L~~n~l~~~~  169 (610)
                       ..+ ++|++|+|++|+|.......|    .. ..+|++|+|++|.++.....    .+..++ +|+.|+|++|+|+...
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence             444 899999999999998877554    33 36999999999999864432    233444 9999999999999887


Q ss_pred             HHHhh----cC-ccccccccccccccccCcc----cccC-CCcccEEecCCCcccc
Q psy10487        170 KDALI----HL-TALESLNLNGNRLKHLSES----VFFP-TPNLKTLSLDGNPWCC  215 (610)
Q Consensus       170 ~~~~~----~l-~~L~~L~L~~n~l~~~~~~----~~~~-~~~L~~l~l~~N~~~c  215 (610)
                      ...+.    .+ .+|+.|+|++|.|......    .+.. .++|+.|++++|.+..
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            75544    44 5999999999999874322    2323 4589999999998754

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.42  E-value=1e-13  Score=136.05  Aligned_cols=186  Identities=13%  Similarity=0.095  Sum_probs=99.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEeccC------C--ccceeeccCCceee-----eeeEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVLHNS------S--FDLLEEEEGDALFE-----KSVSIT  325 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l~~~------~--~~~~~~~~~~~~~~-----~~~~L~  325 (610)
                      +...+..+.+.+|++++|.|.+.|.+  .+.+.|+|  .+..+..-      .  ........++....     ....|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            34566778899999999999999854  78999998  22211100      0  00000000111111     123599


Q ss_pred             EEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcc------------ccccccccCCcceeehhhhHHHHHHHHHhheeE
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMS  392 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (610)
                      |.+++.+|+|.|+|.|.|..+.. ...+.|.|...            ...+.+...+....+..+..+.+.|.+.+....
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            99999999999999999977654 34566777531            123344444443444333333333332222221


Q ss_pred             ----EEEEEeeec-ccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        393 ----FCVCRAHEH-KNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       393 ----~~~~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                          .+.|.+... .......      ..........  ......|.|.+++.+|+|.|.|.|.|..+.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~  232 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPW  232 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCc
Confidence                222222110 0000000      0000011111  122346999999999999999999996543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.42  E-value=9.3e-14  Score=133.72  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=69.5

Q ss_pred             eecceEeecCceEEEEEEEEecCC-CeEEEEeCCEE-----ecc----CC-ccceee-ccC---CceeeeeeEEEEEecC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQV-----LHN----SS-FDLLEE-EEG---DALFEKSVSITLFNVT  330 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~-----l~~----~~-~~~~~~-~~~---~~~~~~~~~L~I~~v~  330 (610)
                      .+..+.+.+|+.+.|.|.+.+.|. +.+.|++++..     +..    .. ...... ..+   .......+.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            456778899999999999999995 89999985432     110    00 000000 000   0001122469999999


Q ss_pred             CCCCeEEEEEeecCC-cceeEEEEEEcCccccccccccCC
Q psy10487        331 DLDAGEYTCYAENIR-GNASGEISLDLPEINLATTLSKTD  369 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~  369 (610)
                      .+|+|.|+|.|.|.. |.....+.|.|...+..|.+...+
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~  125 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK  125 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECC
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCC
Confidence            999999999999997 788888888886554444444433

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.42  E-value=4.9e-13  Score=133.03  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-----EeccCCccceeeccCCceee---eeeEEEEEecCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-----VLHNSSFDLLEEEEGDALFE---KSVSITLFNVTD  331 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-----~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~  331 (610)
                      .+.+...+..+.+.+|++++|.|.+.+.|.|.+.|++++.     .+............++....   ....|+|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4667777888999999999999999999999999998542     11110000000000111111   123899999999


Q ss_pred             CCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487        332 LDAGEYTCYAENIRGN-ASGEISLDLPE  358 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  358 (610)
                      +|+|.|+|.|.|..+. ....+.|.|..
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~  119 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKG  119 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC--
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEec
Confidence            9999999999998765 33345677643

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.42  E-value=1.4e-13  Score=135.35  Aligned_cols=195  Identities=13%  Similarity=0.093  Sum_probs=99.8

Q ss_pred             eeecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec---c-C--Cccceee--ccCCceee-----eeeEEEEE
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH---N-S--SFDLLEE--EEGDALFE-----KSVSITLF  327 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~---~-~--~~~~~~~--~~~~~~~~-----~~~~L~I~  327 (610)
                      ..+..+.+.+|++++|.|.+.|.|  .+.|.|+|+  +..+.   . .  .......  ..++....     ....|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            345678899999999999999886  689999994  22211   0 0  0000000  00111111     13589999


Q ss_pred             ecCCCCCeEEEEEeecCCcc-----eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeE-----EEEEE
Q psy10487        328 NVTDLDAGEYTCYAENIRGN-----ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMS-----FCVCR  397 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  397 (610)
                      +++.+|+|.|+|.|.|..|.     ....+.|.|..   .+.+...+....+..+..+.+.|.+.+.+..     .+.|.
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~---~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~  161 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS---DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWY  161 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC---CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc---cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEE
Confidence            99999999999999999773     22346676642   2233333333333322222222221111111     12222


Q ss_pred             eee-ccccccc------ccCCcccccc--ccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccccCCC
Q psy10487        398 AHE-HKNKRRK------RKGKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAMEQPP  462 (610)
Q Consensus       398 ~~~-~~~~~~~------~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~~~pp  462 (610)
                      +.. .......      ..........  .......|.|.+++.+|+|.|+|.|.|..+... .-..|.|..++|
T Consensus       162 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~~  236 (256)
T 1nqb_A          162 LQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAAA  236 (256)
T ss_dssp             EECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC---
T ss_pred             EECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCCC
Confidence            210 0000000      0000001111  112334799999999999999999999643322 223455554433

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.42  E-value=3e-13  Score=111.20  Aligned_cols=87  Identities=20%  Similarity=0.363  Sum_probs=73.6

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      -+|.+...+....+.+|+.++|.|.+.|.| |.+.|+++|..+....+.  .        ...+.|.|.+++.+|+|.|+
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~--~--------~~~~~L~i~~~~~~D~G~Y~   76 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRT--R--------ITGEEVEVRDSIPADSGLYA   76 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSE--E--------ECSSEEEESSCCGGGSEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCE--E--------EeCCEEEECCCChHHCEEEE
Confidence            356777778888999999999999999998 899999999887654431  1        11348999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..|.....+.|.|
T Consensus        77 C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           77 CVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEeccCCCcEEEEEEEEE
Confidence            999999999998888876

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.41  E-value=4.5e-13  Score=126.22  Aligned_cols=171  Identities=14%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             ceEeecCceEEEEEEEE----ecCCCeEEEEeCCEEeccCCccceeec---cCCce--eeeeeEEEEEecCCCCCeEEEE
Q psy10487        269 MVIREAGGNVTMSCYVY----GDPEPTILWLLNGQVLHNSSFDLLEEE---EGDAL--FEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~----g~P~p~v~W~~~g~~l~~~~~~~~~~~---~~~~~--~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      .+.+.+|++++|.|.+.    |.|.+.+.|++++..+...........   .++..  ....+.|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            46788999999999995    568899999999987632111000000   00000  0112489999999999999999


Q ss_pred             EeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe---eecccccccccCC
Q psy10487        340 YAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA---HEHKNKRRKRKGK  411 (610)
Q Consensus       340 ~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  411 (610)
                      .|.|..|..     ...+.|.|......|.+.....    ..+.            .+.+.|..   .+.+...|.+.+.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~----~~g~------------~~~l~C~~~~g~P~p~i~W~k~g~  146 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI----PTSN------------IRRIICSTSGGFPEPHLSWLENGE  146 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEEC----SSTT------------EEEEEEEEEEESSCEEEEEEESSC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEeccC----CCCC------------eEEEEEecCCccCCCEEEEEECCE
Confidence            999988765     3567777744322222221100    0000            11334443   2333334433221


Q ss_pred             cccc---ccccccc-ccee---eeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        412 MKQS---VSFNDQE-KKLL---DVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       412 ~~~~---~~~~~~~-~~L~---i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      .-..   ....+.+ +.+.   +..+..+|.|.|+|.|.|..|..+..+..
T Consensus       147 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          147 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             ECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            1110   0011122 2222   24556679999999999999987776553

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.41  E-value=1.3e-12  Score=138.62  Aligned_cols=181  Identities=17%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCC----eEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p----~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~  330 (610)
                      +...+..+.+.+|++++|.|.+.|.|.|    .|.|++++  ..+   ............++....   ....|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            4556778889999999999999998874    89999963  221   100000000000110001   13589999999


Q ss_pred             CCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc---ccc
Q psy10487        331 DLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK---NKR  405 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~  405 (610)
                      .+|+|.|+|.|.|..|.. ...+.|.|.....+|.+.........           +.+. .+.+.|...+ .+   ...
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~~~l~C~~~g~~p~~~~v~  151 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVK  151 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCEEEE
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhh-----------ccCC-ceEEEEEEccccCCCcEEE
Confidence            999999999999998753 44566666433334433321111000           0111 1234454433 22   233


Q ss_pred             ccccCCcc-cc------ccccc-----cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        406 RKRKGKMK-QS------VSFND-----QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       406 ~~~~~~~~-~~------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      |.+.+..- ..      .....     ....|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus       152 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  213 (438)
T 1qgc_4          152 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  213 (438)
T ss_dssp             EEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred             EEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccc
Confidence            43322110 00      00001     12478999999999999999999998885444443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=135.66  Aligned_cols=168  Identities=13%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             cceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+.+|+.++|.|.+. |.|.|.+.|+|++..+....+.......      ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~~~n~~g   82 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG------NKTKMTFKDLGMDDLGIYSCDVTDTDG   82 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET------TEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC------CEEEEEECcCCccCCEEEEEEEEeCCC
Confidence            346778999999999885 6899999999999998765432222211      124899999999999999999999998


Q ss_pred             ceeEEEEEEcCcccc---------ccccccCCc-ceeehhhhHHHHHHHHHhheeEEEEEEee---ecccccccccCCc-
Q psy10487        347 NASGEISLDLPEINL---------ATTLSKTDS-WYMLVLGISVCVVSVIVSIGMSFCVCRAH---EHKNKRRKRKGKM-  412 (610)
Q Consensus       347 ~~~~~~~L~V~~~~~---------~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-  412 (610)
                      ... ++.+.|.+...         .|.+..... ...+..+..            +.+.|...   +.+...|.+.+.. 
T Consensus        83 ~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~------------v~l~C~~~~~~p~~~v~W~~~~~~i  149 (312)
T 2y23_A           83 IAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ------------VRFWMQAEKLSGNAKVNYIFNEKEI  149 (312)
T ss_dssp             CCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSC------------EEEEEEESCCCSSCEEEEEETTEEE
T ss_pred             cEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCC------------EEEEEEEEeCCCCCEEEEEECCEEC
Confidence            654 56666632110         222222111 222222111            12233332   2222233222111 


Q ss_pred             --ccccccc----ccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        413 --KQSVSFN----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       413 --~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                        .......    .....|.|.+++.+|+|.|+|.|.|..+.......
T Consensus       150 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  197 (312)
T 2y23_A          150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV  197 (312)
T ss_dssp             CSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEE
T ss_pred             eeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEE
Confidence              0111111    11234999999999999999999886655544333

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.41  E-value=8.6e-13  Score=111.27  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCc-cceeecc--CCceeeeeeEEEEEecCCCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSF-DLLEEEE--GDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~-~~~~~~~--~~~~~~~~~~L~I~~v~~~D  333 (610)
                      .|.+...|..+.+.+|++++|.|.+.|.|.   |.|.|+|++........ .......  ........+.|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            366777788899999999999999999998   99999998732221110 0011000  00001235689999999999


Q ss_pred             CeEEEEEeecCCcceeEEEEEEcC
Q psy10487        334 AGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|+|.|.|..|.+++++.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999883

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.41  E-value=8.6e-13  Score=129.26  Aligned_cols=177  Identities=16%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITL  326 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I  326 (610)
                      .+.+...+..+.+.+|++++|.|.+.|.|     .+.|.|+|++  ..+   ............++....   ....|+|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            45566667888999999999999999988     6899999954  111   100000000000111111   1238999


Q ss_pred             EecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c--
Q psy10487        327 FNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K--  402 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  402 (610)
                      .+++.+|+|.|+|.|.|..+.. ...+.|.|.....+|.+...+.....           ..+. .+...|...+. +  
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~  181 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKD  181 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HHHT-EEEEEEEEEEEBSSC
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhh-----------cCCC-cEEEEEEEeeEeCCC
Confidence            9999999999999999987643 23456766443333333321111000           0111 12344544432 2  


Q ss_pred             -cccccccCCccc-c-c----cccccc------cceeeeeeeeccCcceeeeecCCCcc
Q psy10487        403 -NKRRKRKGKMKQ-S-V----SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       403 -~~~~~~~~~~~~-~-~----~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                       ...|.+.+..-. . .    .....+      ..|.|..+..+|+|.|+|.|.|....
T Consensus       182 ~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          182 INVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             CEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence             133443322100 0 0    001112      24888888888999999999997654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.40  E-value=1.3e-12  Score=124.12  Aligned_cols=169  Identities=14%  Similarity=0.172  Sum_probs=95.2

Q ss_pred             eecceEeecCceEEEEEEEEec-------CCCeEEEEeCCEEe------ccCCcc--ceeeccCCcee-----eeeeEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGD-------PEPTILWLLNGQVL------HNSSFD--LLEEEEGDALF-----EKSVSIT  325 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~-------P~p~v~W~~~g~~l------~~~~~~--~~~~~~~~~~~-----~~~~~L~  325 (610)
                      .+..+.+.+|++++|.|.+.+.       +.+.+.|+|++...      ......  ......++..+     ....+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4667889999999999999864       67899999986521      100000  00000000000     1134799


Q ss_pred             EEecCCCCCeEEEEEeecCCcce----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGNA----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-  400 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~~----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  400 (610)
                      |.+++.+|+|.|+|.+.|..+..    ...+.|.|......|.+.....   +..+..            +...|...+ 
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~---~~~G~~------------v~L~C~~~~~  150 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP---LESGRP------------TRLSCSLPGS  150 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CC---CCTTCC------------EEEEEECTTC
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCcc---ccCCCe------------EEEEEEeccC
Confidence            99999999999999999987432    2467777755443444432111   111111            133444322 


Q ss_pred             -----cccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        401 -----HKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       401 -----~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                           .+...|.+....... ........|.|..+..+|.|.|+|.|.|..|...
T Consensus       151 ~~~~p~p~v~W~~~~~~~~~-~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~  204 (214)
T 2zg1_A          151 CEAGPPLTFSWTGNALSPLD-PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVT  204 (214)
T ss_dssp             CSCSSCCEEEEESSTTSSSC-SSCCCSSEEEECCCTTCCSCEEEEEEECC----C
T ss_pred             CCCCCCceEEEeCCCCccCC-CCceeEEEEEEecccHHcCcEEEEEEEeCCCCcc
Confidence                 222333332211100 1113456799999988899999999999865533

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=3.7e-14  Score=134.91  Aligned_cols=173  Identities=12%  Similarity=0.061  Sum_probs=92.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCeEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +..+.+.+|++++|.|.+.+.|.|.+.|+++  |..+.   ...........++....   ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            6778899999999999999999999999984  33221   00000000000110111   2248999999999999999


Q ss_pred             EEeecCCc-c--eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----ccccccccC
Q psy10487        339 CYAENIRG-N--ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRRKRKG  410 (610)
Q Consensus       339 C~a~N~~G-~--~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  410 (610)
                      |.|.|..+ .  ....+.|.|... ..+|.+...........+..            +...|...+.    +...|.+.+
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~------------v~L~C~~~g~~p~~~~v~W~k~g  153 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNK------------ATLVCLVNDFYPGSATVTWKANG  153 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTE------------ECCCEEEEEEBSSCCEEEEEETT
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCc------------eEEEEEEEeeECCccEEEEEECC
Confidence            99997322 2  123345555322 12333332221111111111            1222322221    122333221


Q ss_pred             Cccc-ccc----c-----cccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        411 KMKQ-SVS----F-----NDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       411 ~~~~-~~~----~-----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..-. ...    .     ....+.|.|.++..+|+|.|+|.|.|..+..+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          154 ATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             EEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             eEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            1100 000    0     011246899999999999999999998876433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.40  E-value=5.1e-14  Score=147.41  Aligned_cols=134  Identities=21%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             CCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccchhhhc----CC---------CCCcEEEccCCCC
Q psy10487         55 SDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVHRDTFK----YL---------TILVEVDLSDNQI  117 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~----~l---------~~L~~LdLs~n~l  117 (610)
                      .+|++|+|++|.|....    ...+.  .+++|++|+|++|.+.......|.    .+         ++|++|+|++|+|
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            35566666666555421    12233  345555555555555433222222    12         4555555555555


Q ss_pred             CCCCc----ccccCCCCCcEEEeeCccccc-----cCcCcCCCCCCccEEEccCcccc----ccCHHHhhcCcccccccc
Q psy10487        118 AWLHQ----DTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLPYLKTIELQHCQIH----SVHKDALIHLTALESLNL  184 (610)
Q Consensus       118 ~~l~~----~~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L  184 (610)
                      .....    ..|..+++|+.|+|++|.++.     +.+..+..+++|+.|+|++|.|+    ...+..+..+++|+.|+|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            42111    123344455555555554441     11223344445555555555442    111233444444455555


Q ss_pred             cccccc
Q psy10487        185 NGNRLK  190 (610)
Q Consensus       185 ~~n~l~  190 (610)
                      ++|.+.
T Consensus       252 ~~n~i~  257 (386)
T 2ca6_A          252 NDCLLS  257 (386)
T ss_dssp             TTCCCC
T ss_pred             CCCCCc
Confidence            544444

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.40  E-value=1.2e-12  Score=117.97  Aligned_cols=96  Identities=24%  Similarity=0.365  Sum_probs=80.0

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+....+........     ..+.|.|.+++..|+|.|
T Consensus        39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y  113 (154)
T 1fhg_A           39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE-----GNCSLTISEVCGDDDAKY  113 (154)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTT-----CEEEEEESSCCGGGCEEE
T ss_pred             CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCC-----CeEEEEECCCChhcCEEE
Confidence            357888888888999999999999999999999999999999887654432222111     135899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCc
Q psy10487        338 TCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      +|.|.|..|.....+.|.|..
T Consensus       114 ~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          114 TCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCeEEEEEEEEEeC
Confidence            999999999999999998843

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.39  E-value=1.2e-13  Score=141.49  Aligned_cols=132  Identities=21%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC-CCCCC-CcccccCCCCCcEEEeeCc-ccccc-CcCcCCCCC-C
Q psy10487         80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN-QIAWL-HQDTFLGNDRLKVLYLNGN-PITEL-RAGQFPKLP-Y  154 (610)
Q Consensus        80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n-~l~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~-~  154 (610)
                      +++|++|+|++|.+....+..|..+++|++|+|++| .++.. .+..+.++++|++|+|++| .++.. ....+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            444455555444444433344444444555555444 33321 1222344444555555444 44431 111233344 4


Q ss_pred             ccEEEccCcc--cc-ccCHHHhhcCcccccccccccc-ccccCcccccCCCcccEEecCCC
Q psy10487        155 LKTIELQHCQ--IH-SVHKDALIHLTALESLNLNGNR-LKHLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       155 L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~N  211 (610)
                      |+.|+|++|.  ++ ...+..+.++++|+.|++++|. ++......+..+++|+.|++++|
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4555554442  22 1112233344445555555444 33222223344444555555444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.39  E-value=2.5e-13  Score=132.80  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=63.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--E---EeccCCccceeeccCCcee---eeeeEEEEEecCCC
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--Q---VLHNSSFDLLEEEEGDALF---EKSVSITLFNVTDL  332 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~---~l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~  332 (610)
                      ..+...+..+.+.+|++++|.|.+.|.|.|.+.|+|..  .   .+............++...   .....|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            45556677888999999999999999999999999843  1   1110000000000000000   11237999999999


Q ss_pred             CCeEEEEEeecCCcce-eEEEEEEcCc
Q psy10487        333 DAGEYTCYAENIRGNA-SGEISLDLPE  358 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~-~~~~~L~V~~  358 (610)
                      |+|.|+|.|.|..+.. ...+.|.|..
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            9999999999987653 3345566643

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.39  E-value=2.3e-13  Score=138.60  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             CCCCCCCCCCCccCCCccccccc--ccccCCCcee-eeecceEeecCceEEEEEEEEec-CCC---eEEEEeCC-EEecc
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKA--QEFACPPNVT-IKESMVIREAGGNVTMSCYVYGD-PEP---TILWLLNG-QVLHN  303 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~--~~~~c~P~i~-~~~~~~~v~~G~~v~l~C~~~g~-P~p---~v~W~~~g-~~l~~  303 (610)
                      +.+.|+|.+.+...... ..+..  ......|.+. ..+....+.+|+.++|.|.+.|. |.|   .|.|++++ ..+..
T Consensus        83 d~g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~  161 (323)
T 2wqr_A           83 SDRTYTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH  161 (323)
T ss_dssp             TTCCEEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred             CCCcEEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence            67889999876543211 11111  1111234443 34455567889999999999986 567   89999965 43332


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      ...  ......++.+...+.|.|.+++.+|+|.|+|.|.|..+.......+
T Consensus       162 ~~~--~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v  210 (323)
T 2wqr_A          162 STR--KEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRST  210 (323)
T ss_dssp             CCC--EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEE
T ss_pred             ccC--CCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEE
Confidence            211  1111112223456789999999999999999999987544333333

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.38  E-value=1.3e-12  Score=106.94  Aligned_cols=87  Identities=21%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.|...+.++.+.+|++++|.|.+.+ |.|.+.|+|||..+....+.....+..      ...|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~------~~~L~I~~v~~~D~G~Y~C   77 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGK------KHILILHNCQLGMTGEVSF   77 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETT------EEEEEECSCCGGGCEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECC------EEEEEECCCChhhCEEEEE
Confidence            577888889999999999999999987 568999999999987665433222111      2489999999999999999


Q ss_pred             EeecCCcceeEEEEEEcC
Q psy10487        340 YAENIRGNASGEISLDLP  357 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~  357 (610)
                      .|.|.    ..++.|.|.
T Consensus        78 ~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           78 QAANT----KSAANLKVK   91 (93)
T ss_dssp             EETTE----EEEEEEEEE
T ss_pred             EECCC----cEEEEEEEE
Confidence            99884    456667663

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.38  E-value=1.2e-13  Score=134.03  Aligned_cols=183  Identities=14%  Similarity=0.134  Sum_probs=94.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---c-CCccceeec--cCCcee----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---N-SSFDLLEEE--EGDALF----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~-~~~~~~~~~--~~~~~~----~~~~~L~I~~v~  330 (610)
                      +...+..+.+.+|++++|.|. .+.|.|.|.|+|+  +....   . .........  .++...    .....|+|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            455677889999999999999 8899999999995  21110   0 000000000  001001    113489999999


Q ss_pred             CCCCeEEEEEeecCCcce-----eEEEEEEcCcccc---------ccccccCCcceeehhhhHHHHHHHHHhheeEEEEE
Q psy10487        331 DLDAGEYTCYAENIRGNA-----SGEISLDLPEINL---------ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVC  396 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (610)
                      .+|+|.|+|.|.|..|..     ...+.|.|.....         .+.+...+....+..+..+.+.|.+.+.+...+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            999999999999987631     1234565533221         01233333333333333322222222222222233


Q ss_pred             Eeeec-ccccccc---c---CCccccccc----cccccceeeeeeeeccCcceeeeecCCC
Q psy10487        397 RAHEH-KNKRRKR---K---GKMKQSVSF----NDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       397 ~~~~~-~~~~~~~---~---~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      .+... ....+..   .   ......+..    ......|.|.+++.+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            22211 0000000   0   000111111    1224579999999999999999999974

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=6.1e-13  Score=110.53  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=72.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.|...+.++.+.+|+.++|.|.+  .|.|.+.|+|+|..+....+........      ...|.|.+++.+|+|.|+|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~------~~~L~I~~v~~~D~G~Y~C   78 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGR------IHKLVIANALTEDEGDYVF   78 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSS------EEEEEESSCCGGGCSEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCC------EEEEEECCCChhhCEEEEE
Confidence            5777778889999999999999999  8999999999999987665433322211      2479999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCc
Q psy10487        340 YAENIRGNASGEISLDLPE  358 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~  358 (610)
                      .|.|.  ..+.++.|.|.+
T Consensus        79 ~a~N~--~~~~~a~L~V~~   95 (100)
T 2yuz_A           79 APDAY--NVTLPAKVHVIS   95 (100)
T ss_dssp             EESSS--CCCEEEEEEEEC
T ss_pred             EEcCC--CeeEEEEEEEeC
Confidence            99998  556777777743

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.38  E-value=8e-14  Score=133.62  Aligned_cols=90  Identities=14%  Similarity=0.202  Sum_probs=64.9

Q ss_pred             cCCCceeeeecceE--eecCceEEEEEEEEec---CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC
Q psy10487        258 ACPPNVTIKESMVI--REAGGNVTMSCYVYGD---PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD  331 (610)
Q Consensus       258 ~c~P~i~~~~~~~~--v~~G~~v~l~C~~~g~---P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  331 (610)
                      ..+|.+...+....  +.+|++++|.|.+.|.   |. +.|.|+|++..+...... ......++.+...+.|.|.+++.
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~   85 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDW   85 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHc
Confidence            45677777665544  7899999999999988   44 799999999877543211 11111122334557899999999


Q ss_pred             CCCeEEEEEeecCCcce
Q psy10487        332 LDAGEYTCYAENIRGNA  348 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~  348 (610)
                      +|+|.|+|.|.|..+..
T Consensus        86 ~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           86 MSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HTTCCEEEEEEETTCSS
T ss_pred             CCCCeEEEEEECCcCCC
Confidence            99999999999998764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=127.63  Aligned_cols=188  Identities=13%  Similarity=0.116  Sum_probs=99.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEe--cCCCeEEEEeC--CEEec---cCC-c-cc-eeec--cCCceee-----eee
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLN--GQVLH---NSS-F-DL-LEEE--EGDALFE-----KSV  322 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~--g~~l~---~~~-~-~~-~~~~--~~~~~~~-----~~~  322 (610)
                      +|.+...+..+.+.+|++++|.|.+.+  .|.+.+.|++.  +....   ... . .. ....  .++....     ...
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            456667788999999999999999998  47889999973  21110   000 0 00 0000  0011111     124


Q ss_pred             EEEEEecCCCCCeEEEEEeecC------------CcceeEEEEEEcCcccc------------ccccccCCcceeehhhh
Q psy10487        323 SITLFNVTDLDAGEYTCYAENI------------RGNASGEISLDLPEINL------------ATTLSKTDSWYMLVLGI  378 (610)
Q Consensus       323 ~L~I~~v~~~D~G~Y~C~a~N~------------~G~~~~~~~L~V~~~~~------------~p~~~~~~~~~~~~~~~  378 (610)
                      .|+|.+++.+|+|.|.|.|.|.            .+.....+.|.|.....            ++.+...+....+..+.
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            7999999999999999999997            33444556777754322            23333334333333333


Q ss_pred             HHHHHHHHHhhee-EEEEEEeee-ccccccccc------CCcccccc--ccccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        379 SVCVVSVIVSIGM-SFCVCRAHE-HKNKRRKRK------GKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       379 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~------~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      .+.+.|.+.+... ..+.|.+.. .........      ........  .......|.|.+++.+|+|.|.|.|.|..+
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            3222222111111 112222111 000000000      00001111  112234699999999999999999999544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.38  E-value=3.7e-12  Score=125.04  Aligned_cols=183  Identities=13%  Similarity=0.082  Sum_probs=94.0

Q ss_pred             eeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE--ec----cCCccceee--ccCCceee-----eeeEEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV--LH----NSSFDLLEE--EEGDALFE-----KSVSITL  326 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~--l~----~~~~~~~~~--~~~~~~~~-----~~~~L~I  326 (610)
                      ...+..+.+.+|++++|.|.+.|.  |.+.+.|+|..  ..  ..    .... ....  ..++....     ....|+|
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGS-TYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCC-EEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCc-EEecccccccEEEEEecCCceEEEEE
Confidence            345677789999999999999984  57899999832  11  11    0000 0000  00111111     1237999


Q ss_pred             EecCCCCCeEEEEEeecCC----cceeEEEEEEcCcc-----------ccccccccCCcceeehhhhHHHHHHHHHhhee
Q psy10487        327 FNVTDLDAGEYTCYAENIR----GNASGEISLDLPEI-----------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGM  391 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~----G~~~~~~~L~V~~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (610)
                      .+++.+|+|.|+|.|.|..    +.....+.|.|...           ...+.+...+....+..+..+.+.|.+.+...
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  170 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS  170 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence            9999999999999999973    22334566777543           12234444444333333333222221111111


Q ss_pred             E-EEEEEeee-cccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        392 S-FCVCRAHE-HKNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       392 ~-~~~~~~~~-~~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      . .+.|.+.. ........      .......+..  ......|.|.+++.+|+|.|.|.|.|...
T Consensus       171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  236 (257)
T 3gkz_A          171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFP  236 (257)
T ss_dssp             GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence            1 11221110 00000000      0000011111  11233699999999999999999998543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.37  E-value=7.4e-13  Score=109.77  Aligned_cols=84  Identities=27%  Similarity=0.404  Sum_probs=68.3

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............     ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   90 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGS   90 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe-----cCeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence            4567889999999999999999999999999988765432111110     11248999999999999999999999999


Q ss_pred             eeEEEEEEc
Q psy10487        348 ASGEISLDL  356 (610)
Q Consensus       348 ~~~~~~L~V  356 (610)
                      ...++.|.|
T Consensus        91 ~~~~~~l~V   99 (100)
T 3caf_A           91 INHTYHLDV   99 (100)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999988876

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.37  E-value=9e-13  Score=105.53  Aligned_cols=80  Identities=23%  Similarity=0.360  Sum_probs=63.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ...+.+.+|++++|.|.+.| |.|.|.|+|||..+....+.....+..      ...|.|.+++.+|+|.|+|.|.|   
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~n---   72 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGA------RQVLRVQGARSGDAGEYLCDAPQ---   72 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSS------CEEEEESSCSSTTCEEEEEECTT---
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCC------eEEEEecCCCCcccEEEEEEECC---
Confidence            35678899999999999976 999999999999998776544433322      23799999999999999999855   


Q ss_pred             ceeEEEEEEcC
Q psy10487        347 NASGEISLDLP  357 (610)
Q Consensus       347 ~~~~~~~L~V~  357 (610)
                       .+.++.|.|.
T Consensus        73 -~~~~a~l~V~   82 (84)
T 2lu7_A           73 -DSRIFLVSVE   82 (84)
T ss_dssp             -TCEEEEEEEC
T ss_pred             -EEEEEEEEEE
Confidence             4566777774

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=106.06  Aligned_cols=84  Identities=18%  Similarity=0.289  Sum_probs=71.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ++.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....               +.|.|.+++.+|+|.|+|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C   67 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------------KLYMVPYVDLEHQGTYWC   67 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------------SEEEESSCCGGGCEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------------CeEEECCCCHHhCEEEEE
Confidence            46677778888999999999999999999999999999988765431               389999999999999999


Q ss_pred             EeecCCccee-EEEEEEcCc
Q psy10487        340 YAENIRGNAS-GEISLDLPE  358 (610)
Q Consensus       340 ~a~N~~G~~~-~~~~L~V~~  358 (610)
                      .|.|..|... ..+.|.|.+
T Consensus        68 ~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           68 HVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             EEECSSCEEECCCEEEEEC-
T ss_pred             EEEcCCCCEEeeeEEEEEeh
Confidence            9999999754 567777743

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.37  E-value=3.9e-13  Score=132.06  Aligned_cols=182  Identities=17%  Similarity=0.174  Sum_probs=94.6

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEeccC------Ccccee--eccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHNS------SFDLLE--EEEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~~------~~~~~~--~~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|++.  +..+..-      ......  ...++....     ....|+|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34456789999999999999876  789999973  2211100      000000  000111111     123699999


Q ss_pred             cCCCCCeEEEEEeecC----CcceeEEEEEEcCccc-------------cccccccCCcceeehhhhHHHHHHHHHhhee
Q psy10487        329 VTDLDAGEYTCYAENI----RGNASGEISLDLPEIN-------------LATTLSKTDSWYMLVLGISVCVVSVIVSIGM  391 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~----~G~~~~~~~L~V~~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (610)
                      ++.+|+|.|.|.|.|.    .+.....+.|.|.+..             ..+.+...+....+..+..+.+.|.+.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            9999999999999998    3444556677775320             1334444444333333333222222111111


Q ss_pred             EEEEEEeee-ccccccc------ccCCcccccc--ccccccceeeeeeeeccCcceeeeecCCCc
Q psy10487        392 SFCVCRAHE-HKNKRRK------RKGKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       392 ~~~~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      ..+.|.+.. .......      ..........  .......|.|.+++.+|+|.|.|.|.|..+
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  232 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP  232 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC
Confidence            111222211 0000000      0000001111  112233699999999999999999999644

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.37  E-value=5.1e-13  Score=128.99  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEe---ccCCccceeeccCCce---eeeeeEEEEEecCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVL---HNSSFDLLEEEEGDAL---FEKSVSITLFNVTD  331 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l---~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~  331 (610)
                      .+.+...+..+.+.+|++++|.|.+.|.|.+.+.|++++  ..+   ............++..   ......|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            455666678888999999999999999999999999843  211   1000000000000000   11234899999999


Q ss_pred             CCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-cc---ccc
Q psy10487        332 LDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KN---KRR  406 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~  406 (610)
                      +|+|.|+|.|.|..+.. ...+.|.|.....+|.+...+.....           ..+. .+...|...+. +.   ..|
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~~~v~W  170 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVKW  170 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCEEEEE
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHh-----------hcCC-ceEEEEEEccccCCceEEEE
Confidence            99999999999987643 22344555433333333321111000           0111 12334444332 21   233


Q ss_pred             cccCCcc-cc-c----ccccc------ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        407 KRKGKMK-QS-V----SFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       407 ~~~~~~~-~~-~----~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .+.+..- .. .    .....      ...|.|..+..+|+|.|+|.|.|....
T Consensus       171 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          171 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            3322110 00 0    00011      235777778888999999999997554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.36  E-value=2.1e-12  Score=123.07  Aligned_cols=171  Identities=12%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             ecceEeecCceEEEEEEEE-ecC-CCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCeE
Q psy10487        267 ESMVIREAGGNVTMSCYVY-GDP-EPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGE  336 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~-g~P-~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~  336 (610)
                      |..+.+.+|++++|.|.+. +.+ .+.|.|++++  ..+.   ...........++....   ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            5667889999999999964 443 6899999943  2111   00000000000110111   13489999999999999


Q ss_pred             EEEEeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cccccccC
Q psy10487        337 YTCYAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NKRRKRKG  410 (610)
Q Consensus       337 Y~C~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  410 (610)
                      |+|.|.|..|  .....+.|.|.....+|.+.........           +.+. .+...|...+. +   ...|.+.+
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~P~~~~v~W~k~g  154 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQ-----------LKSG-TASVVCLLNNFYPREAKVQWKVDN  154 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhh-----------ccCC-cEEEEEEEEeEcCCceEEEEEECC
Confidence            9999999987  2233456666433334433321111000           0111 12344544432 2   23343332


Q ss_pred             Cccc-c-c----cccccc------cceeeeeeeeccCcceeeeecCCCcce
Q psy10487        411 KMKQ-S-V----SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       411 ~~~~-~-~----~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      ..-. . .    .....+      ..|.|..+..+|+|.|+|.|.|.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          155 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             eecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            2110 0 0    001111      257888888889999999999987653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.36  E-value=1.7e-13  Score=146.15  Aligned_cols=120  Identities=13%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             CCCCCCCCCccCCCcc-ccccc---------------ccccCCCceeeeecc-eE-eecCceEEEEEEEEecC----CCe
Q psy10487        234 HPLSCTEPGMLQTKHW-DDVKA---------------QEFACPPNVTIKESM-VI-REAGGNVTMSCYVYGDP----EPT  291 (610)
Q Consensus       234 ~~~~C~a~~~l~g~~~-~~v~~---------------~~~~c~P~i~~~~~~-~~-v~~G~~v~l~C~~~g~P----~p~  291 (610)
                      +.|+|.+.+..+.... ..+..               .....+|.+...+.. .. +.+|+.++|.|.+.|.|    .+.
T Consensus       196 g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~  275 (444)
T 1igt_B          196 QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQ  275 (444)
T ss_dssp             SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCE
T ss_pred             CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeE
Confidence            8899998776654211 11111               112235665343332 22 58899999999999984    369


Q ss_pred             EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487        292 ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       292 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |+|++++..+........... .++.+...+.|.|.+++.+|+|.|+|.|.|..|....+..+
T Consensus       276 v~W~k~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          276 ISWFVNNVEVHTAQTQTHRED-YNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             EEEEETTEECSSTTCBCCEEE-CSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEECCccccCcccccceeC-CCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEE
Confidence            999999988764432211111 11123456789999999999999999999999977444444

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.36  E-value=1.6e-12  Score=123.42  Aligned_cols=173  Identities=12%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             ecceEeecCceEEEEEEEEecC---CCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCe
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDP---EPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAG  335 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G  335 (610)
                      +..+.+.+|++++|.|.+.|.|   .|.|.|++++  ..+.   ...........++....   ....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            7778899999999999999988   5899999852  2221   00000000000110111   1248999999999999


Q ss_pred             EEEEEeecCCcce-eEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc----ccccccc
Q psy10487        336 EYTCYAENIRGNA-SGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK----NKRRKRK  409 (610)
Q Consensus       336 ~Y~C~a~N~~G~~-~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  409 (610)
                      .|+|.|.|..|.. ...+.|.|.... .+|.+...+.....           ..+. .+...|...+.+    ...|.+.
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~~~v~W~k~  154 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEE-----------LSTA-KATLVCTITDFYPGVVTVDWKVD  154 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHH-----------HTTT-EEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHH-----------ccCC-cEEEEEEEEEEeCCCeEEEEEEC
Confidence            9999999988743 234566663221 23333221111000           0111 123344443321    2234332


Q ss_pred             CCcc-ccc----ccccc------ccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        410 GKMK-QSV----SFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       410 ~~~~-~~~----~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      +..- ...    .....      ...|.|..+..+|+|.|+|.|.|.....+.
T Consensus       155 g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          155 GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            2110 000    00111      125777788888999999999998765443

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.36  E-value=9.7e-14  Score=148.60  Aligned_cols=123  Identities=16%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCCccC------C--C--cc-cccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEE
Q psy10487        231 LYSHPLSCTEPGMLQ------T--K--HW-DDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILW  294 (610)
Q Consensus       231 l~~~~~~C~a~~~l~------g--~--~~-~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W  294 (610)
                      .|.+.|.|.+.+..+      +  .  .+ ........   ..+|.+...+....+.+|+.++|.|.+.|. |. |.|.|
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  168 (457)
T 1hzh_H           89 ADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  168 (457)
T ss_dssp             GGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEE
T ss_pred             ccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEE
Confidence            467889998876542      0  0  01 11111111   124666555545557899999999999987 75 89999


Q ss_pred             EeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       295 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ++++..+.........  ..++.+...+.|.|.++..+| |.|+|.|.|..|.......+.+
T Consensus       169 ~k~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~  227 (457)
T 1hzh_H          169 NSGALTSGVHTFPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP  227 (457)
T ss_dssp             TTTTBCTTEEEEEEEE--CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             EeCCEeccceEcCceE--CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence            9998654322111111  122233445689999999999 9999999998887665555544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.36  E-value=4.8e-12  Score=130.03  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=98.2

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEecc------CCccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHN------SSFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~------~~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.+  .+.|.|+|+  +..+..      .........  .++..+.     ..+.|+|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            45567889999999999999874  689999996  332210      000000000  0111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCcceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---c
Q psy10487        329 VTDLDAGEYTCYAENIRGNASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---N  403 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~  403 (610)
                      ++.+|+|.|+|.|.|..+.....+.|.|... ..+|.+...+....+..+            ..+.+.|...+. +   .
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g------------~~v~L~C~~~g~~P~~~~  153 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSG------------GTAALGCLVKDYFPEPVT  153 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSS------------SEEEEEEEEEEEBSSCCC
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCC------------CcEEEEEEEeeEECCCeE
Confidence            9999999999999997766666677877532 223332211111111111            112344544433 2   3


Q ss_pred             ccccccCCccccc---cccc------cccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487        404 KRRKRKGKMKQSV---SFND------QEKKLLDVSITTTDRHTGSCEALGSQPDMELIE  453 (610)
Q Consensus       404 ~~~~~~~~~~~~~---~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~  453 (610)
                      ..|.+.+......   ....      ....|.|.++..+| |.|+|.|.|..|......
T Consensus       154 v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~  211 (344)
T 1za6_B          154 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  211 (344)
T ss_dssp             EEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred             EEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence            3344333210000   0001      12267888888778 999999999998754433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.36  E-value=3.2e-12  Score=123.90  Aligned_cols=97  Identities=18%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecC----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEec
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDP----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNV  329 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v  329 (610)
                      .+...+..+.+.+|++++|.|.+.|.|    .|.|.|+|+.  ..   +............++....   ....|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            355667788999999999999999998    8899999952  21   1110000000000111111   1237999999


Q ss_pred             CCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487        330 TDLDAGEYTCYAENIRGN-ASGEISLDLPE  358 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  358 (610)
                      +.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  112 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKG  112 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEec
Confidence            999999999999998775 34456677754

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1e-12  Score=111.75  Aligned_cols=99  Identities=20%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec---CCCeEEEEeCCE-EeccC-Cccceeec-cCCceeeeeeEEEEEecCCCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQ-VLHNS-SFDLLEEE-EGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~~g~-~l~~~-~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      .+.+...|..+.+.+|++++|.|.+.|.   |.|.|.|+|+.. .+... .....+.. ..+........|+|.+++.+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            3556667888999999999999999885   799999999742 22211 11111110 011111235799999999999


Q ss_pred             CeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        334 AGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      +|.|+|+|.|..|..++.+.|.|.+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            9999999999999999999999853

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.36  E-value=2e-12  Score=129.04  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=60.9

Q ss_pred             eeeecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec---c-C--Cccceee--ccCCceee-----eeeEEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH---N-S--SFDLLEE--EEGDALFE-----KSVSITL  326 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~---~-~--~~~~~~~--~~~~~~~~-----~~~~L~I  326 (610)
                      ...|..+.+.+|++++|.|.+.|.|  .+.+.|+|++  ..+.   . .  .......  ..++....     ....|+|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3456678899999999999999885  6899999953  1110   0 0  0000000  00111111     1358999


Q ss_pred             EecCCCCCeEEEEEeecCCcc-----eeEEEEEEcCc
Q psy10487        327 FNVTDLDAGEYTCYAENIRGN-----ASGEISLDLPE  358 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V~~  358 (610)
                      .+++.+|+|.|.|.|.|..|.     ....+.|.|..
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~  146 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSS  146 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEec
Confidence            999999999999999999872     12344666643

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.35  E-value=9.4e-13  Score=125.09  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+.... ...+.+|+.++|.|.+.|. |.|.|.|+|+|..+....+.  ..  .    .....|.|.+++.+|+|.|+
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~--~----~~~~~L~I~~v~~~D~G~Y~  187 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DF--K----DGICTLLITEFSKKDAGIYE  187 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CC--S----SEEEEEEETTCCGGGCEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce--Ec--C----CCEEEEEECCCCcccCEEEE
Confidence            56666555 4788999999999999999 99999999999998765431  11  1    12347999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..|.+.+++.|.+
T Consensus       188 C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          188 VILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEEEETTEEEEEEEEECC
T ss_pred             EEEEcCCCEEEEEEEEec
Confidence            999999999999998876

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.35  E-value=4e-13  Score=132.26  Aligned_cols=186  Identities=17%  Similarity=0.159  Sum_probs=90.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCC--ccceeeccC---Cce-----eeeeeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSS--FDLLEEEEG---DAL-----FEKSVSI  324 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~--~~~~~~~~~---~~~-----~~~~~~L  324 (610)
                      +|.+...+..+.+.+|++++|.|.+.+.|.+.+.|++.  +..   +....  ........+   +..     ......|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            35666777889999999999999999999999999982  211   11000  000000000   000     0123479


Q ss_pred             EEEecCCCCCeEEEEEeecCCc---ceeEEEEEEcCcccc--------------ccccccCCcceeehhhhHHHHHHHHH
Q psy10487        325 TLFNVTDLDAGEYTCYAENIRG---NASGEISLDLPEINL--------------ATTLSKTDSWYMLVLGISVCVVSVIV  387 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~L~V~~~~~--------------~p~~~~~~~~~~~~~~~~~~~~~~~~  387 (610)
                      .|.+++.+|+|.|.|.|.|..|   .....+.|.|.....              .+.+...+....+..+..+.+.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999999877   334456666643211              22334444434433333333333222


Q ss_pred             hh-eeEEEEEEeeec-cccccccc------CCccccccc----cccccceeeeeeeeccCcceeeeecCC
Q psy10487        388 SI-GMSFCVCRAHEH-KNKRRKRK------GKMKQSVSF----NDQEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       388 ~~-~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      .. ....+.|.+... ........      ......+..    ......|.|.+++.+|+|.|.|.|.+.
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            21 122223322211 11000000      000111111    123456999999999999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=5e-13  Score=150.93  Aligned_cols=169  Identities=17%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             EEEcCCCCCCccCcccCCCccEEEeecCCCCCC---------ChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCc
Q psy10487         38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYL---------TKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILV  108 (610)
Q Consensus        38 ~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l---------~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~  108 (610)
                      .++...+++..+|..   .++.++|+.|.|..+         .+..|.  .+.+|+.|+|++|.|..++...| .+.+|+
T Consensus       177 ~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~  250 (727)
T 4b8c_D          177 KIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISANIF-KYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred             eEEeeCCCCCcchhh---HhhcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence            344444444444432   234444444444432         244454  56777777777777777665544 677777


Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccc
Q psy10487        109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR  188 (610)
Q Consensus       109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  188 (610)
                      +|+|++|+|+.++ ..|.++++|++|+|++|.|+.+ +..|..|++|+.|+|++|.|..++. .|..+.+|+.|+|++|.
T Consensus       251 ~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          251 RLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSC
T ss_pred             EEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCc
Confidence            7777777777654 4567777777777777777766 3456777777777777777776643 37777777777777777


Q ss_pred             ccccCcccccCCCc-ccEEecCCCcccc
Q psy10487        189 LKHLSESVFFPTPN-LKTLSLDGNPWCC  215 (610)
Q Consensus       189 l~~~~~~~~~~~~~-L~~l~l~~N~~~c  215 (610)
                      |++..+..+..+.. +..+++.+|.+..
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccC
Confidence            77665554433211 1235566666554

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.35  E-value=3.2e-12  Score=121.33  Aligned_cols=173  Identities=12%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec---c-CCcc-ceee--ccCCceee-----eeeEEEEEec
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH---N-SSFD-LLEE--EEGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~---~-~~~~-~~~~--~~~~~~~~-----~~~~L~I~~v  329 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|+  +....   . .... ....  ..++..+.     ....|+|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            46667889999999999999876  489999985  22211   0 0000 0000  00111111     1248999999


Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cc
Q psy10487        330 TDLDAGEYTCYAENIRGNASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NK  404 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~  404 (610)
                      +.+|+|.|+|.|.|.. .....+.|.|... ..+|.+...+....+..+.            .+...|...+. +   ..
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~------------~v~L~C~~~g~~P~p~~v  152 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNS------------MVTLGCLVKGYFPEPVTV  152 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSS------------EEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCC------------cEEEEEEEeeEecCCcEE
Confidence            9999999999999964 2223355666421 2223322111101111111            11334444333 2   33


Q ss_pred             cccccCCccc-----ccc---ccccccceeeeeeeeccCcceeeeecCCCcceeee
Q psy10487        405 RRKRKGKMKQ-----SVS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       405 ~~~~~~~~~~-----~~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~  452 (610)
                      .|.+.+....     ...   .......|.|..+..+| |.|+|.|.|..|.....
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          153 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            3433322100     000   00112357777777656 99999999999986553

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.35  E-value=1.3e-12  Score=140.69  Aligned_cols=124  Identities=19%  Similarity=0.310  Sum_probs=73.8

Q ss_pred             CCCCCCCCCCCCccCCC----cc-cccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-C-eEEEEeCCE
Q psy10487        231 LYSHPLSCTEPGMLQTK----HW-DDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-P-TILWLLNGQ  299 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~----~~-~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p-~v~W~~~g~  299 (610)
                      .+.+.|.|.+.+..+..    .+ ..+.....   .-+|.+...+. ..+.+|+.++|.|.+.|. |. | .|.|++++.
T Consensus        90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~  168 (475)
T 1iga_A           90 EDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQ  168 (475)
T ss_pred             hhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEEcCCCc
Confidence            36778999887654210    00 11111111   12455544332 223689999999999997 66 5 999999875


Q ss_pred             EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEc
Q psy10487        300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL  356 (610)
Q Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  356 (610)
                      ....... .......++.+...+.|.|..+...|+|.|+|.|.|..|.. ...+.+.|
T Consensus       169 ~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V  225 (475)
T 1iga_A          169 GVTARNF-PPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV  225 (475)
T ss_pred             ccceEeC-CceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence            3221111 01110122234455689999999999999999999998742 33444444

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.35  E-value=1.5e-12  Score=120.81  Aligned_cols=163  Identities=15%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             cceEeecCceEEEEEEEEe-cCCCeEEEEeC-CEEeccCCcc-ce-ee-cc--CCcee-eeeeEEEEEecCCCCCeEEEE
Q psy10487        268 SMVIREAGGNVTMSCYVYG-DPEPTILWLLN-GQVLHNSSFD-LL-EE-EE--GDALF-EKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~-g~~l~~~~~~-~~-~~-~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+...... .. .. ..  ++..+ ...+.|+|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4567899999999999854 45789999994 4333211110 00 01 11  11111 234689999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487        340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN  419 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (610)
                      .+.+.. .....+.|.|.+....|.+.....        .            +...|.....+.. ...|.+.+..+. .
T Consensus        87 ~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~--------~------------v~L~C~~~~gp~p-~i~W~~~~~~l~-~  143 (180)
T 2dru_A           87 RMLHET-EDQWKITMEVYEMVSKPMIYWECS--------N------------ATLTCEVLEGTDV-ELKLYQGKEHLR-S  143 (180)
T ss_dssp             EEESSS-EEEEEEEEEEECCCCCCEEEEEGG--------G------------TEEEEECSSCTTC-EEEEEETTEEEE-E
T ss_pred             EEEcCC-eEEEEEEEEEECCCCCCEEEecCC--------C------------EEEEEEeCCCCCC-EEEEEECCeECc-C
Confidence            998876 667788888855433333322110        0            1334443111221 122332222222 1


Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                      ..+..|.+. . .+|+|.|+|.|.|..|..+....+
T Consensus       144 ~~~~~l~~~-~-~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          144 LRQKTMSYQ-W-TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             ESSSEEEEE-C-SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCCCEEEEE-E-hhcCccEEEEEecCcCccccceeE
Confidence            223344442 2 679999999999999987665443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.34  E-value=3.6e-13  Score=130.09  Aligned_cols=192  Identities=14%  Similarity=0.044  Sum_probs=94.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCC-C-eEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEEEecC
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPE-P-TILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVT  330 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p-~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~  330 (610)
                      +.+.. +..+.+.+|++++|.|.+.|.+. + .+.|+|++  ..+   ............++....   ....|.|.+++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   99 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR   99 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence            33344 66778899999999999998654 4 79999853  211   100000000000110111   23489999999


Q ss_pred             CCCCeEEEEEeecCCcc---eeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhh-ee-EEEEEEeeecccc
Q psy10487        331 DLDAGEYTCYAENIRGN---ASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSI-GM-SFCVCRAHEHKNK  404 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  404 (610)
                      .+|+|.|+|.|.|..|.   ....+.|.|.... .+|.+...+.......+..+.+.|.+.+. +. ..+.|++.++.-.
T Consensus       100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  179 (234)
T 2j6e_L          100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK  179 (234)
T ss_dssp             STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred             HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence            99999999999999882   2334556663221 23333221111111111111111211111 11 1122222111100


Q ss_pred             cccccCC-ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487        405 RRKRKGK-MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE  453 (610)
Q Consensus       405 ~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~  453 (610)
                      ....... ....-........|.|..+..+|+|.|+|.|.|..+..+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          180 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             SSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            0000000 000000001123588888888999999999999887754433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.34  E-value=5.6e-13  Score=136.52  Aligned_cols=173  Identities=20%  Similarity=0.166  Sum_probs=129.4

Q ss_pred             cEEEcCCCCCCc--cCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccC-CCccc-chhhhcCCCCCcEE
Q psy10487         37 KSALCKDANFTA--LPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREV-HRDTFKYLTILVEV  110 (610)
Q Consensus        37 ~~~~C~~~~l~~--lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i-~~~~f~~l~~L~~L  110 (610)
                      +.++..++.++.  +|..+  ..+|++|+|++|.++......+.  .+++|++|+|++| .++.. .+..+..+++|++|
T Consensus        96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B           96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            455555555542  44322  24788888888877655555666  6899999999999 67753 34557889999999


Q ss_pred             EccCC-CCCCC-CcccccCCC-CCcEEEeeCcc--ccc-cCcCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccc
Q psy10487        111 DLSDN-QIAWL-HQDTFLGND-RLKVLYLNGNP--ITE-LRAGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLN  183 (610)
Q Consensus       111 dLs~n-~l~~l-~~~~f~~l~-~L~~L~Ls~N~--l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  183 (610)
                      +|++| +++.. .+..+..++ +|++|+|++|.  ++. ..+..+..+++|+.|+|++|. ++......+..+++|+.|+
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence            99999 88864 245577888 99999999994  442 112345678999999999999 7766667888999999999


Q ss_pred             ccccc-ccccCcccccCCCcccEEecCCC
Q psy10487        184 LNGNR-LKHLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       184 L~~n~-l~~~~~~~~~~~~~L~~l~l~~N  211 (610)
                      +++|. +.......+..+++|+.|++.+|
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99995 33222235778899999999998

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.34  E-value=2.4e-12  Score=125.49  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEe
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFN  328 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~  328 (610)
                      .+...+..+.+.+|++++|.|.+.|.|     .+.+.|+++.  ..   +............++....   ....|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            355567788999999999999999988     6899999842  21   1100000000000110111   124899999


Q ss_pred             cCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487        329 VTDLDAGEYTCYAENIRGN-ASGEISLDLPE  358 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  358 (610)
                      ++.+|+|.|.|.|.|..+. ....+.|.|..
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  113 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKG  113 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEEC
Confidence            9999999999999998764 23345677643

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.34  E-value=3.3e-12  Score=124.38  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEecCCCC
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNVTDLD  333 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D  333 (610)
                      .+...+..+.+.+|++++|.|.+.|.|.|.+.|+++.  ..   +............++....   ....|+|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            4556678889999999999999999999999999842  11   1100000000000111111   13489999999999


Q ss_pred             CeEEEEEeecCCcce-eEEEEEEcCc
Q psy10487        334 AGEYTCYAENIRGNA-SGEISLDLPE  358 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~-~~~~~L~V~~  358 (610)
                      +|.|.|.|.|..+.. ...+.|.|..
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~  108 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITG  108 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcC
Confidence            999999999986542 2345666643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=8.4e-13  Score=149.13  Aligned_cols=134  Identities=24%  Similarity=0.246  Sum_probs=114.3

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      ..|+.|+|++|.|..++...|   ++.+|++|+|++|.|+.++ ..|.++.+|++|+|++|+|+.+ +..|.++.+|++|
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEE
T ss_pred             CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEE
Confidence            579999999999999998887   4899999999999999775 6789999999999999999987 4668999999999


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCc-cccccccccccccccCc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT-ALESLNLNGNRLKHLSE  194 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~  194 (610)
                      +|++|.|+.++.. |..|++|+.|+|++|.|....+..+..+. .+..|+|++|.++...+
T Consensus       299 ~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          299 YFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             ECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            9999999988664 99999999999999999988777765542 22346777777765443

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.33  E-value=5.6e-12  Score=121.49  Aligned_cols=183  Identities=13%  Similarity=0.047  Sum_probs=99.3

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cC--Cccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NS--SFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~--~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.|.|+|++  ..+.    ..  ........  .++..+.     ....|+|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            35667889999999999999887  7899999853  2110    00  00000000  1111111     235899999


Q ss_pred             cCCCCCeEEEEEeecCCcc-eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---
Q psy10487        329 VTDLDAGEYTCYAENIRGN-ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---  402 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---  402 (610)
                      ++.+|+|.|.|.+.|..+. ....+.|.|... ..+|.+........+..           +. .+...|...+. +   
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~-----------g~-~v~L~C~~~g~~P~p~  153 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTS-----------GS-SVTLGCLVKGYFPEPV  153 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------------------CEEEEEEEEEEBSSCC
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccC-----------CC-cEEEEEEeecEeCCCe
Confidence            9999999999999997542 223456777531 12232221110000000           11 11334444332 2   


Q ss_pred             cccccccCCccc-----ccc---ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        403 NKRRKRKGKMKQ-----SVS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       403 ~~~~~~~~~~~~-----~~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ...|.+.+....     .+.   .......|.|..+..+| |.|+|.|.|..+.......+.+.++|
T Consensus       154 ~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          154 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred             EEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence            333433322100     000   00122357777777667 99999999988877777777666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.33  E-value=5e-13  Score=139.86  Aligned_cols=181  Identities=24%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             cEEEcCCCCCCc-----cCccc--CCCccEEEeecCCCCCCChhhhccc--CC---------CCccEEEcccCCCcccc-
Q psy10487         37 KSALCKDANFTA-----LPSTL--DSDIQVLDLNNNKISYLTKEAFKSI--GL---------LNLQRIYLKNSGIREVH-   97 (610)
Q Consensus        37 ~~~~C~~~~l~~-----lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~--~l---------~~L~~L~L~~n~l~~i~-   97 (610)
                      +.++..++.++.     +|..+  ..+|++|+|++|.|+......+...  .+         ++|++|+|++|.+.... 
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  176 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  176 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence            445555555544     33322  2356666666666543332222210  11         45666666666654211 


Q ss_pred             h---hhhcCCCCCcEEEccCCCCCC-----CCcccccCCCCCcEEEeeCcccc----ccCcCcCCCCCCccEEEccCccc
Q psy10487         98 R---DTFKYLTILVEVDLSDNQIAW-----LHQDTFLGNDRLKVLYLNGNPIT----ELRAGQFPKLPYLKTIELQHCQI  165 (610)
Q Consensus        98 ~---~~f~~l~~L~~LdLs~n~l~~-----l~~~~f~~l~~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~L~~n~l  165 (610)
                      +   ..|..+++|++|+|++|+|..     +.+..|..+++|+.|+|++|.++    ...+..+..+++|+.|+|++|+|
T Consensus       177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            1   244555566666666666552     22224555566666666666653    11122445556666666666665


Q ss_pred             cccC----HHHhhc--Cccccccccccccccc-----cCcccccCCCcccEEecCCCcccccC
Q psy10487        166 HSVH----KDALIH--LTALESLNLNGNRLKH-----LSESVFFPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       166 ~~~~----~~~~~~--l~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~l~l~~N~~~c~c  217 (610)
                      ....    +..+..  +++|+.|+|++|.++.     ++...+..+++|+.|++++|++....
T Consensus       257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            5441    222322  5566666666666655     33333244556666666666665444

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.33  E-value=2.9e-12  Score=124.84  Aligned_cols=93  Identities=17%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC----------------CEEeccCCc-cceeeccCCceeeeeeEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN----------------GQVLHNSSF-DLLEEEEGDALFEKSVSI  324 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~----------------g~~l~~~~~-~~~~~~~~~~~~~~~~~L  324 (610)
                      .+...+..+.+.+|++++|.|.+.+.|.+.|.|+|.                +........ .+......   ......|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L   79 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA---SLTLSTL   79 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE---ETTEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec---CCCEEEE
Confidence            455667788999999999999999999999999982                111111100 00000000   0113489


Q ss_pred             EEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcC
Q psy10487        325 TLFNVTDLDAGEYTCYAENIRG----NASGEISLDLP  357 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~  357 (610)
                      .|.+++.+|+|.|+|.|.|..+    .....+.|.|.
T Consensus        80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~  116 (246)
T 4dzb_B           80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVL  116 (246)
T ss_dssp             EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEe
Confidence            9999999999999999998765    22344566664

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.32  E-value=8.1e-12  Score=119.65  Aligned_cols=177  Identities=9%  Similarity=0.058  Sum_probs=96.4

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CCc----cceeec--cCCceee-----eeeEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SSF----DLLEEE--EGDALFE-----KSVSITL  326 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~~----~~~~~~--~~~~~~~-----~~~~L~I  326 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+++.  ..   +.. ...    ......  .++....     ....|+|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            45567889999999999999876  7899999842  21   100 000    000000  0111111     1358999


Q ss_pred             EecCCCCCeEEEEEeecCCc-----ceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee
Q psy10487        327 FNVTDLDAGEYTCYAENIRG-----NASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE  400 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (610)
                      .+++.+|+|.|.|.+.|..|     .....+.|.|... ..+|.+...........+..            +...|...+
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~------------v~L~C~~~g  153 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSM------------VTLGCLVKG  153 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSE------------EEEEEEEEE
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCc------------EEEEEEEcc
Confidence            99999999999999999775     2223456666432 12233322111101111111            133444433


Q ss_pred             ---cc-cccccccCCcccc--ccc--c----ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487        401 ---HK-NKRRKRKGKMKQS--VSF--N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS  455 (610)
Q Consensus       401 ---~~-~~~~~~~~~~~~~--~~~--~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  455 (610)
                         .+ ...|.+.+..-..  ...  .    .....|.|..+..+| |.|+|.|.|..|.......+
T Consensus       154 ~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          154 YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence               22 3334333221000  000  0    112357787777789 99999999999986665544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.32  E-value=5.4e-12  Score=120.67  Aligned_cols=176  Identities=17%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ec-cCC--cc--ceeec--cCCceee-----eeeEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LH-NSS--FD--LLEEE--EGDALFE-----KSVSITL  326 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~-~~~--~~--~~~~~--~~~~~~~-----~~~~L~I  326 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|++  ..   +. ...  ..  .....  .++....     ....|+|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            46677899999999999999877  7899999853  21   11 000  00  00000  0111111     1248999


Q ss_pred             EecCCCCCeEEEEEeecCCcce---eEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-
Q psy10487        327 FNVTDLDAGEYTCYAENIRGNA---SGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-  401 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~G~~---~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  401 (610)
                      .+++.+|+|.|.|.+.|..|..   ...+.|.|... ..+|.+...+.......+..            +...|...+. 
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~------------v~L~C~~~g~~  153 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSS------------VTLGCLVKGYF  153 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSS------------EEEEEEEEEEB
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCc------------EEEEEEEEEEe
Confidence            9999999999999999986532   23466666432 12333322111111111111            1334443333 


Q ss_pred             --c-cccccccCCccc--ccc------ccccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        402 --K-NKRRKRKGKMKQ--SVS------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       402 --~-~~~~~~~~~~~~--~~~------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                        + ...|.+......  ...      .......|.|..+..+| |.|+|.|.|..|..+....
T Consensus       154 P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          154 PEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             SSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence              3 334443322100  000      00123457777776655 9999999999998666443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=1.2e-14  Score=137.29  Aligned_cols=108  Identities=25%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             CCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEE
Q psy10487         79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI  158 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  158 (610)
                      .+++|++|+|++|.+..++  .|..+++|++|+|++|+|..++. .+..+++|+.|+|++|.++.++  .+..+++|+.|
T Consensus        46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L  120 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEE
T ss_pred             cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEE
Confidence            3555666666666555543  45555566666666665555432 3444455566666666555543  24455555555


Q ss_pred             EccCccccccCH-HHhhcCccccccccccccccc
Q psy10487        159 ELQHCQIHSVHK-DALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       159 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      +|++|+|..+.. ..+..+++|+.|++++|.+..
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            555555555432 344555555555555555543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.31  E-value=2.8e-12  Score=119.63  Aligned_cols=120  Identities=19%  Similarity=0.218  Sum_probs=89.1

Q ss_pred             CCCCCCCCCCCCccCCCcc-cccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHW-DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~-~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+..+.... ..+.......+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+........
T Consensus        73 ~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  152 (194)
T 2a38_A           73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI  152 (194)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEE
T ss_pred             ccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEE
Confidence            3677899988655432211 112222222467777777788899999999999999999999999999998876543222


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .....      ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus       153 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          153 SQEGD------LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEETT------EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEcCC------EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            11111      237999999999999999999999999999998887

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.31  E-value=2.3e-13  Score=139.93  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|.|.+.+... ...........   .-+|.+...+....+.+|+.++|.|.+.|. |. |.|.|++++..+....
T Consensus        89 ~D~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  167 (344)
T 1za6_B           89 EDTAVYFCTRSLNMA-YWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT  167 (344)
T ss_dssp             GGCEEEEEEETTTTC-EECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEE
T ss_pred             ccCEEEEEEEecCcc-eecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeE
Confidence            477889998876321 11111111111   134556554444456789999999999997 65 7999999987643221


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      .....  ..++.+...+.|.|.+++.+| |.|+|.|.|..|.......
T Consensus       168 ~~~~~--~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~  212 (344)
T 1za6_B          168 FPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  212 (344)
T ss_dssp             CCCEE--CTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEE
T ss_pred             CCCeE--CCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEe
Confidence            11111  112233455689999998888 9999999999987544433

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=124.12  Aligned_cols=92  Identities=17%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             ecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEecCCCCCeE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGE  336 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~  336 (610)
                      +..+.+.+|++++|.|.+.+.  |.+.+.|+|..  ..   +............++....   ....|.|.+++.+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            445788999999999999987  88999999842  11   1100000000000110111   12479999999999999


Q ss_pred             EEEEeecCCcc---eeEEEEEEcCc
Q psy10487        337 YTCYAENIRGN---ASGEISLDLPE  358 (610)
Q Consensus       337 Y~C~a~N~~G~---~~~~~~L~V~~  358 (610)
                      |.|.|.|..|.   ....+.|.|..
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~  113 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLG  113 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC-
T ss_pred             EEEEEEECCCCceEECCCEEEEEEC
Confidence            99999997653   23456677754

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.30  E-value=4.4e-13  Score=127.29  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=60.6

Q ss_pred             Cceeee-ecceE-eecCceEEEEEEEEecC---C-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        261 PNVTIK-ESMVI-REAGGNVTMSCYVYGDP---E-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       261 P~i~~~-~~~~~-v~~G~~v~l~C~~~g~P---~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.+... |.... +.+|++++|.|.+.|.|   . +.|.|+|++..+......... ...++.+...+.|.|.+++.+|+
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~   80 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPRE-EQFNSTFRSVSELPIMHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCC-EETTTEEEEEEEEECCHHHHHTT
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCc-CcCCCcEEEEEEEEEehhHcCCC
Confidence            344443 34334 78999999999999985   2 489999999776532211000 01112334456899999999999


Q ss_pred             eEEEEEeecCCcce
Q psy10487        335 GEYTCYAENIRGNA  348 (610)
Q Consensus       335 G~Y~C~a~N~~G~~  348 (610)
                      |.|+|.|.|..|..
T Consensus        81 G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           81 KEFKCRVNSAAFPA   94 (207)
T ss_dssp             CCEEEEEECTTCSS
T ss_pred             CEEEEEEEccCCCC
Confidence            99999999998865

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.30  E-value=3.3e-12  Score=103.90  Aligned_cols=86  Identities=22%  Similarity=0.379  Sum_probs=63.4

Q ss_pred             CCceeeeecce--EeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMV--IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~--~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+.....+.  .+.+|+.++|.|.+.+ |.|.+.|+|||..+..+.+.....+.+      ...|.|.+++.+|+|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~------~~~L~I~~v~~~D~G~Y   76 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGP------HRRLVLPATQPSDGGEF   76 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETT------EEEEEESSCCGGGCSEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCC------eEEEEeCCCChhhcEEE
Confidence            44454444444  4468999999999966 999999999999998766544333222      23799999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.|.    +.++.|+|
T Consensus        77 ~C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           77 QCVAGDE----CAYFTVTI   91 (91)
T ss_dssp             EEECSSC----EEEEEEEC
T ss_pred             EEEEcce----EEEEEEEC
Confidence            9999774    45555554

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=1.2e-11  Score=105.92  Aligned_cols=81  Identities=27%  Similarity=0.327  Sum_probs=65.2

Q ss_pred             ceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487        276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD  355 (610)
Q Consensus       276 ~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  355 (610)
                      +...|.|.+.|.|.|.+.|+|+|..+..............  ....+.|.|.+++.+|+|.|+|.|.|..|.+.+++.|.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~   98 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG--EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   98 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS--SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC--ccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEE
Confidence            5678899999999999999999999877654332221111  12456899999999999999999999999999999998


Q ss_pred             cCc
Q psy10487        356 LPE  358 (610)
Q Consensus       356 V~~  358 (610)
                      |..
T Consensus        99 v~~  101 (118)
T 1wwc_A           99 FLK  101 (118)
T ss_dssp             CSC
T ss_pred             Ecc
Confidence            854

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=9.4e-12  Score=103.78  Aligned_cols=89  Identities=20%  Similarity=0.258  Sum_probs=68.2

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc-ceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +.+...+..+.+.+|++++|.|.+.| |.|.+.|+|++..+...... +....++     ....|.|.+++.+|+|.|+|
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A            8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEE
T ss_pred             ceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEE
Confidence            34666778889999999999999988 77999999999988766521 1111111     12589999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCcc
Q psy10487        340 YAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~  359 (610)
                      .|.|    ....+.|.|.+.
T Consensus        82 ~a~n----~~~~~~l~V~~~   97 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDLK   97 (103)
T ss_dssp             EETT----EEEEEEEEEECC
T ss_pred             EECC----CcEEEEEEEeCC
Confidence            9998    466777777443

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.30  E-value=9.5e-12  Score=104.82  Aligned_cols=97  Identities=22%  Similarity=0.397  Sum_probs=73.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC--CCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      +|.+...+....+.+|++++|.|.+.|.|  .|.+.|++++..+.......  .............+.|.|.+++.+|+|
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   89 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG   89 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence            68888888889999999999999999654  58999999999886543211  011111111233579999999999999


Q ss_pred             EEEEEeecCCcc-eeEEEEEEc
Q psy10487        336 EYTCYAENIRGN-ASGEISLDL  356 (610)
Q Consensus       336 ~Y~C~a~N~~G~-~~~~~~L~V  356 (610)
                      .|+|.|.|..|. .+..+.|.|
T Consensus        90 ~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           90 XYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999998 457777776

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.29  E-value=6.5e-12  Score=117.04  Aligned_cols=119  Identities=23%  Similarity=0.309  Sum_probs=88.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEeccCCc-c
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSF-D  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~~~~-~  307 (610)
                      .+.+.|+|.+.+.  +.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++  ++..+..... .
T Consensus        66 ~d~G~Y~C~~~n~--~~~~~~~~l~-V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~  142 (190)
T 2wv3_A           66 EDSGEYHCVYHFV--SAPKANATIE-VKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG  142 (190)
T ss_dssp             GGCEEEEEEEEET--TEEEEEEEEE-EECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTS
T ss_pred             ccCEEEEEEEEeC--CcccccEEEE-EecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCC
Confidence            4678899998766  3222222222 2357888888888889999999999999999999999999  7777643211 1


Q ss_pred             ceeeccCCceeeeeeEEEEEecC-CCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .......    ...+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus       143 ~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          143 RFFIINK----ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             CEEEEEC----SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEecC----CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence            1111111    112489999999 79999999999999999999988887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=5.7e-12  Score=138.04  Aligned_cols=148  Identities=18%  Similarity=0.268  Sum_probs=120.0

Q ss_pred             CccEEE-eecCCCCCCChhhh-----cccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCC
Q psy10487         56 DIQVLD-LNNNKISYLTKEAF-----KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND  129 (610)
Q Consensus        56 ~L~~L~-L~~n~i~~l~~~~~-----~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~  129 (610)
                      +|+.|+ ++.|.+..+....+     ..+....|+.|+|++|.|+.++.  |+.+++|++|+|++|+|..++ ..|.+++
T Consensus       410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~  486 (567)
T 1dce_A          410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP-PALAALR  486 (567)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCC-GGGGGCT
T ss_pred             hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccc-hhhhcCC
Confidence            577777 66665544433211     11123368999999999999864  999999999999999999886 4799999


Q ss_pred             CCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCccccccccccccccccCcc---cccCCCcccE
Q psy10487        130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSES---VFFPTPNLKT  205 (610)
Q Consensus       130 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~  205 (610)
                      +|+.|+|++|.++.++  .|..+++|+.|+|++|+|+.+. +..|..+++|+.|+|++|.++++++.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            9999999999999986  6899999999999999999997 88899999999999999999988653   2334778888


Q ss_pred             Eec
Q psy10487        206 LSL  208 (610)
Q Consensus       206 l~l  208 (610)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=119.70  Aligned_cols=118  Identities=23%  Similarity=0.386  Sum_probs=84.5

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeec--ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKES--MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+...+.............+|.+...+.  ...+.+|+.++|.|.+.|.|.|.+.|+++|..+.......
T Consensus        67 ~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~  146 (189)
T 2v5t_A           67 SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI  146 (189)
T ss_dssp             GGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEE
T ss_pred             hHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEE
Confidence            36678999876655432211111111223455544332  4567789999999999999999999999999887654321


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ...        ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus       147 ~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  186 (189)
T 2v5t_A          147 LKG--------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  186 (189)
T ss_dssp             EET--------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             Eec--------CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence            111        1248999999999999999999999999998888877

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.3e-12  Score=104.77  Aligned_cols=91  Identities=22%  Similarity=0.313  Sum_probs=72.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|++++|.|.+.| |.|.+.|+|++..+....+..... ++     ....|.|.+++.+|+|.|+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~   79 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVC-EG-----TMAMLVIRGASLKDAGEYT   79 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEE-ET-----TEEEEEESSCCTTTCSEEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEE-CC-----CEEEEEECCCCcccCEEEE
Confidence            4677888888899999999999999998 889999999998886654322221 11     1247999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccc
Q psy10487        339 CYAENIRGNASGEISLDLPEIN  360 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~  360 (610)
                      |.|.|    ...++.|.|.+.+
T Consensus        80 C~a~n----~~~~~~l~V~~~p   97 (103)
T 2edf_A           80 CEVEA----SKSTASLHVEEKA   97 (103)
T ss_dssp             EECSS----CEEEEEEEECCCS
T ss_pred             EEEcc----CCcEEEEEEeCCC
Confidence            99999    4677888885443

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.28  E-value=5.4e-12  Score=107.87  Aligned_cols=96  Identities=28%  Similarity=0.436  Sum_probs=71.5

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc----ceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      ..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+......    .....++.   .....+.+.+++.+|
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~v~~~D   83 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS---LFFLRIVHGRKSRPD   83 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSC---EEESSCCCBTTBCSS
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCc---EEEEEEEeCCCCcCc
Confidence            45788888888999999999999999999999999999999988654311    11111111   111123334668999


Q ss_pred             CeEEEEEeecCCcceeE-EEEEEc
Q psy10487        334 AGEYTCYAENIRGNASG-EISLDL  356 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~-~~~L~V  356 (610)
                      +|.|+|.|.|..|.+.+ .+.|.+
T Consensus        84 ~G~Y~C~a~N~~G~~~s~~~~l~~  107 (117)
T 2v9t_A           84 EGVYVCVARNYLGEAVSHDASLEV  107 (117)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEEEEeCccceEeeeEEEEh
Confidence            99999999999998754 667766

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.28  E-value=7.1e-13  Score=114.43  Aligned_cols=98  Identities=20%  Similarity=0.311  Sum_probs=77.4

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceee--ccCCceeeeeeEEEEEecCCCCC
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEE--EEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      ..+|.+.. +....+.+|+.+.|.|.+.|.|.|. |.|++++..+..........  ...+.  ...+.|.|.+++.+|.
T Consensus        12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~   88 (122)
T 2cry_A           12 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE--GVISTLTISNIVRADF   88 (122)
T ss_dssp             CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETT--EEEEEEECTTCCHHHH
T ss_pred             ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCC--ceEEEEEEcCCChhhC
Confidence            46788887 8888999999999999999999997 99999998887531111111  11000  1245899999999999


Q ss_pred             -eEEEEEeecCCcceeEEEEEEcCc
Q psy10487        335 -GEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       335 -G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                       |.|+|.|.|..|.+...+.|.|.+
T Consensus        89 ~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           89 QTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CceEEEEEECCCCeEEEEEEEEECC
Confidence             999999999999999999998854

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=5.8e-12  Score=105.18  Aligned_cols=87  Identities=16%  Similarity=0.315  Sum_probs=67.4

Q ss_pred             CCceeeeecc---eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~---~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+...+..   +.+.+|++++|.|.+.|.|.| +.|+|++..+....+.......      ....|.|.+++.+|+|.
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~   79 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDG------RKHRLILPEAKVQDSGE   79 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEET------TEEEEEESSCCTTTCEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCC------CEEEEEECCCChhhCEE
Confidence            5666666666   788999999999999999999 9999999988765433222111      12479999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcC
Q psy10487        337 YTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      |+|.|.|..+    .+.|.|.
T Consensus        80 Y~C~a~n~~~----~~~l~V~   96 (104)
T 2e6p_A           80 FECRTEGVSA----FFGVTVQ   96 (104)
T ss_dssp             EEEECSSCCC----CEEEEEE
T ss_pred             EEEEECCceE----EEEEEEc
Confidence            9999999854    4555553

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.28  E-value=4.5e-12  Score=120.45  Aligned_cols=122  Identities=23%  Similarity=0.345  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|+|.+.+..+......+......      ..|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...
T Consensus        75 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~  154 (212)
T 2yd1_A           75 RDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS  154 (212)
T ss_dssp             TTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT
T ss_pred             CcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC
Confidence            4678899998776554222222222211      1267777777888999999999999999999999999999988754


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE-EEEEcCcccc
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE-ISLDLPEINL  361 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~L~V~~~~~  361 (610)
                      .... .        ...+.|.|.+++.+|+|.|+|.|.|..|..... +.|.|.+...
T Consensus       155 ~~~~-~--------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          155 NPRY-S--------LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             STTE-E--------EETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CCeE-E--------ccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            3221 1        223489999999999999999999999998764 8888865433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=7.6e-12  Score=137.02  Aligned_cols=171  Identities=19%  Similarity=0.251  Sum_probs=128.5

Q ss_pred             cCCCCCCccCcccC--CCccEEEeecCC-------------CCCCChhhhcccCCCCccEEE-cccCCCcccchhh----
Q psy10487         41 CKDANFTALPSTLD--SDIQVLDLNNNK-------------ISYLTKEAFKSIGLLNLQRIY-LKNSGIREVHRDT----  100 (610)
Q Consensus        41 C~~~~l~~lP~~l~--~~L~~L~L~~n~-------------i~~l~~~~~~~~~l~~L~~L~-L~~n~l~~i~~~~----  100 (610)
                      +++++|+.+|..+.  .+|+.|++++|.             +....+..+.  ++.+|+.|+ ++.|.+..+....    
T Consensus       356 Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~~L~~l~l~~n  433 (567)
T 1dce_A          356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDLRSKFLLEN  433 (567)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccchhhhhhhhcc
Confidence            34455566665553  356666665543             3333444444  466777777 5555433322111    


Q ss_pred             -hcC--CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCc
Q psy10487        101 -FKY--LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT  177 (610)
Q Consensus       101 -f~~--l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (610)
                       +..  ...|+.|+|++|+|+.++.  |..+++|+.|+|++|.++.++. .|..+++|+.|+|++|+|+.++  .|..++
T Consensus       434 ~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~  508 (567)
T 1dce_A          434 SVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLP  508 (567)
T ss_dssp             HHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCS
T ss_pred             cccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCC
Confidence             111  1258999999999999864  9999999999999999997754 7899999999999999999984  789999


Q ss_pred             cccccccccccccccC-cccccCCCcccEEecCCCcccccCC
Q psy10487        178 ALESLNLNGNRLKHLS-ESVFFPTPNLKTLSLDGNPWCCDCH  218 (610)
Q Consensus       178 ~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~  218 (610)
                      +|+.|+|++|+|+++. +..+..+++|+.|++++|++.....
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999999999999996 7788899999999999999876644

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.27  E-value=9.4e-12  Score=124.11  Aligned_cols=127  Identities=13%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+.........+...... -+|.+...+....+.+|+.++|.|.+.|+|.|.+.|++++...........
T Consensus       151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~  230 (289)
T 3mjg_X          151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT  230 (289)
T ss_dssp             CCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEE
T ss_pred             ccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccc
Confidence            4678999998655443332222222211 467788887778899999999999999999999999987765433221111


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      ..... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       231 ~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          231 DFLLD-MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             EESCT-TTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             cccCC-cceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            11000 0113457999999999999999999999999999999999843

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.9e-12  Score=104.22  Aligned_cols=83  Identities=18%  Similarity=0.353  Sum_probs=68.6

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+..+.+.+|+.++|.|.+.|.| |.+.|+|++..+....+..  .        ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~--~--------~~~~L~i~~v~~~D~G~Y~C~a~n~~   77 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTR--I--------TGEEVEVQDSVPADSGLYACVTSSPS   77 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEE--E--------CSSEEEETTCCTTTCEEEEEEEEETT
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEE--E--------ECCEEEEccCCHHHCEEEEEEEEeCC
Confidence            45667788999999999999987 8999999998775543211  1        12489999999999999999999999


Q ss_pred             cceeEEEEEEcCcc
Q psy10487        346 GNASGEISLDLPEI  359 (610)
Q Consensus       346 G~~~~~~~L~V~~~  359 (610)
                      |.....+.|.|.+.
T Consensus        78 g~~~~~~~l~V~~~   91 (99)
T 2cr3_A           78 GSDTTYFSVNVSDA   91 (99)
T ss_dssp             EEEEEEEEECBCSC
T ss_pred             ceEEEEEEEEEecC
Confidence            99999999988543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.27  E-value=1.7e-12  Score=128.32  Aligned_cols=98  Identities=19%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC------CCeEEEEeC--CEE---eccCCccceeeccCCceee---eeeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP------EPTILWLLN--GQV---LHNSSFDLLEEEEGDALFE---KSVSIT  325 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P------~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~~---~~~~L~  325 (610)
                      .+.+...+..+.+.+|++++|.|.+.+.|      .+.+.|++.  +..   +............++....   ....|+
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            46677778889999999999999999988      789999984  221   1100000000000111111   135899


Q ss_pred             EEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP  357 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~  357 (610)
                      |.+++.+|+|.|.|.|.|..+. ....+.|.|.
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~  117 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIK  117 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEE
Confidence            9999999999999999998653 2234566664

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.27  E-value=1e-12  Score=124.64  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=57.2

Q ss_pred             CceeeeecceEe--ecCceEEEEEEEEecCC----CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        261 PNVTIKESMVIR--EAGGNVTMSCYVYGDPE----PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       261 P~i~~~~~~~~v--~~G~~v~l~C~~~g~P~----p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.+...+....+  .+|++++|.|.+.|.|+    +.|.|+|++..+.......... ..++.+...+.|.|......|+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~-~~~g~~~~~~~l~i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE-QYNSTYRVVSVLTVLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCcee-ccCCcEEEEEEEEEEHHHccCC
Confidence            455555444433  68999999999999863    4999999998775432111111 1111222233444444444559


Q ss_pred             eEEEEEeecCCcceeEEEEE
Q psy10487        335 GEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |.|+|.|.|..|....+..+
T Consensus        81 g~Y~C~a~n~~~~~~~~~~v  100 (207)
T 1l6x_A           81 KEYKCKVSNKALPAPIEKTI  100 (207)
T ss_dssp             CCEEEEEECTTSSSCEEEEE
T ss_pred             ceEEEEEEcCcCCcceEEEe
Confidence            99999999998875333333

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.26  E-value=2.9e-12  Score=121.29  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=76.5

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC--ccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~--~~~  308 (610)
                      .+.+.|+|.+.+..+... ..+... +..||.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+....  ..+
T Consensus        79 ~D~G~Y~C~a~n~~g~~~-~~~~l~-V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r  156 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVT-KQEHLS-VVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG  156 (203)
T ss_dssp             GGCEEEEEEEEETTEEEE-EEEEEE-EEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred             HHCeEEEEEEEcCCCcEE-EEEEEE-ecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence            478899999877554322 222222 2346777777888889999999999999999999999999776543221  111


Q ss_pred             e-eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        309 L-EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       309 ~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      . ...++.     ...+.|.+++.+|+|.|+|+|.|.+|.+...
T Consensus       157 ~~~~~~g~-----l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          157 VMKEKDGS-----LSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             CEECTTSC-----EEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             EEEeCCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            1 111221     1245667999999999999999999998764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.26  E-value=1.1e-11  Score=102.14  Aligned_cols=87  Identities=25%  Similarity=0.362  Sum_probs=68.2

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+... +..+.+.+|++++|.|.+. |.|.|.+.|++++.......           .....+.|.|.+++.+|+|.|
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-----------~~~~~~~L~i~~v~~~D~G~Y   77 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-----------AMDFNGILTIRNVQPSDAGTY   77 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-----------EEEETTEEEECSCCGGGCEEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-----------eecCCCEEEEeCCChhhCEEE
Confidence            3444443 4667889999999999998 68999999999754332211           112335899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcC
Q psy10487        338 TCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|.|..|.....+.|.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           78 VCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EEEEECSSCEEEEEEEEEEC
T ss_pred             EEEecCCCCccccEEEEEEe
Confidence            99999999999999988873

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.26  E-value=8.1e-12  Score=118.26  Aligned_cols=88  Identities=25%  Similarity=0.488  Sum_probs=72.5

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.......+     ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus       122 ~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~N~  196 (212)
T 2r15_A          122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG-----RTAYFTINGVSTADSGKYGLVVKNK  196 (212)
T ss_dssp             BCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETT-----TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCC-----CEEEEEEcCcchHHCeEEEEEEEcC
Confidence            34566788999999999999999999999999999987665433222211     1258999999999999999999999


Q ss_pred             CcceeEEEEEEcC
Q psy10487        345 RGNASGEISLDLP  357 (610)
Q Consensus       345 ~G~~~~~~~L~V~  357 (610)
                      .|....++.|.|.
T Consensus       197 ~g~~~~~~~l~V~  209 (212)
T 2r15_A          197 YGSETSDFTVSVF  209 (212)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9999999888873

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.25  E-value=3e-11  Score=116.11  Aligned_cols=172  Identities=12%  Similarity=0.051  Sum_probs=92.7

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec---c-CC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH---N-SS--FDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~---~-~~--~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|..  ..+.   . ..  ......  ..++....     ....|+|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            45567899999999999999887  7899999842  2111   0 00  000000  00111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCc-----c---eeEEEEEEcCcc-cccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEe
Q psy10487        329 VTDLDAGEYTCYAENIRG-----N---ASGEISLDLPEI-NLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRA  398 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G-----~---~~~~~~L~V~~~-~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (610)
                      ++.+|+|.|.|.+.|..|     .   ....+.|.|... ..+|.+.. .+......+ .            .+...|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g-~------------~v~L~C~~  152 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSG-G------------TAALGCLV  152 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCC-C------------EEEEEEEE
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCC-C------------cEEEEEEE
Confidence            999999999999999875     2   123456776431 12233221 111111111 1            11334444


Q ss_pred             eec-c---cccccccCCccc--ccc-cccc------ccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        399 HEH-K---NKRRKRKGKMKQ--SVS-FNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       399 ~~~-~---~~~~~~~~~~~~--~~~-~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      .+. +   ...|.+.+....  ... ....      ...|.|..+..+| |.|+|.|.|..+....
T Consensus       153 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  217 (225)
T 1op3_H          153 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  217 (225)
T ss_dssp             EEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEE
T ss_pred             EeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccE
Confidence            332 2   233433322100  000 0011      1246777777678 9999999997775443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.25  E-value=1.6e-11  Score=105.64  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             cceEeecCceEEEEEEEEec--CCCeEEEEeCCEEeccC---CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        268 SMVIREAGGNVTMSCYVYGD--PEPTILWLLNGQVLHNS---SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ..+.+.+|++++|.|.+.|.  |.+.+.|++++..+...   ........ +.......+.|.|.+++.+|+|.|+|.|.
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE-ETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc-CCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            34588999999999999994  45789999988744311   00000000 01111345689999999999999999999


Q ss_pred             cCCcceeEEEEEEcCc
Q psy10487        343 NIRGNASGEISLDLPE  358 (610)
Q Consensus       343 N~~G~~~~~~~L~V~~  358 (610)
                      |..|...+.+.|.|.+
T Consensus        95 n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEec
Confidence            9999999999999843

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.25  E-value=4.3e-11  Score=99.12  Aligned_cols=89  Identities=21%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             CCCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        259 CPPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+|.+...+.. ..+.+|++++|.|.+. .|.|.+.|+|++..+....+..... .+     ....|.|.+++.+|+|.|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~-~~-----~~~~L~I~~~~~~D~G~Y   78 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH-KG-----CQRILFINNCQMTDDSEY   78 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEE-ET-----TEEEEEEEEECTTTCCEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEe-cC-----CEEEEEEcCCCcCcCEEE
Confidence            46788777766 6788999999999998 7999999999998887654322221 11     123799999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCc
Q psy10487        338 TCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      +|.|    |....++.|.|.+
T Consensus        79 ~C~a----g~~~~~~~l~V~~   95 (100)
T 2yuv_A           79 YVTA----GDEKCSTELFVRS   95 (100)
T ss_dssp             EEEE----TTEEEEEEEEECC
T ss_pred             EEEE----CCceEEEEEEEec
Confidence            9999    7788888898854

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.25  E-value=1.4e-11  Score=101.01  Aligned_cols=82  Identities=15%  Similarity=0.281  Sum_probs=67.9

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+....+.+|++++|.|.+.|  .|.+.|+++|..+....+..          ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~----------~~~~~L~i~~~~~~D~G~Y~C~a~n~~   74 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTV----------LIGEYLQIKGATPRDSGLYACTAARTV   74 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEE----------EETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEE----------EeCCEEEECcCCcccCEEEEEEEccCC
Confidence            456778899999999999987  58999999999886554311          123489999999999999999999999


Q ss_pred             cceeEEEEEEcCcc
Q psy10487        346 GNASGEISLDLPEI  359 (610)
Q Consensus       346 G~~~~~~~L~V~~~  359 (610)
                      |.....+.|.|.+.
T Consensus        75 g~~~~~~~l~V~~~   88 (95)
T 4hwu_A           75 DSETWIFMVNVTDA   88 (95)
T ss_dssp             CEEEEEEEEEECCC
T ss_pred             CcEEEEEEEEEeCC
Confidence            99999999998543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.24  E-value=1e-11  Score=119.98  Aligned_cols=93  Identities=13%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             CCcee-eeecceEeecCceEEEEEEEEec-CC-C-eEEEEeCCEEe-ccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        260 PPNVT-IKESMVIREAGGNVTMSCYVYGD-PE-P-TILWLLNGQVL-HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       260 ~P~i~-~~~~~~~v~~G~~v~l~C~~~g~-P~-p-~v~W~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +|.+. ..+....+.+|+.++|.|.+.|. |. | .|+|+++|..+ .....  ......++.+...+.|+|.+++.+|+
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~--~~~~~~~g~~~~~s~L~I~~~~~~D~   89 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM--VLQEHFNGTYSASSAVPVSTQDWLSG   89 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC--EEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc--cceECCCCcEEEEEEEEecchhccCC
Confidence            45554 34566677899999999999985 64 5 99999999876 32211  11112223334567899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEE
Q psy10487        335 GEYTCYAENIRGNASGEISL  354 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L  354 (610)
                      |.|+|.|.|..+.......+
T Consensus        90 g~Y~C~~~~~~~~~~~~~~v  109 (231)
T 2w59_A           90 ERFTCTVQHEELPLPLSKSV  109 (231)
T ss_dssp             CCEEEEEECTTCSSCEEEEE
T ss_pred             CEEEEEEEcCCCCCceEEEE
Confidence            99999999988764444444

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=7.6e-12  Score=104.95  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|+.++|.|.+.|.|.| +.|+|++..+....+........      ...|.|.+++.+|+|.|+
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~   79 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGR------FHKLVIDDVRPEDEGDYT   79 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETT------EEEEEESSCCTTTCSCEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCC------EEEEEECCCCcCCCEEEE
Confidence            56888888899999999999999999999988 99999999887655432221111      248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|.  ..+..+.|.|
T Consensus        80 C~a~n~--~~~~~~~l~V   95 (106)
T 2dlt_A           80 FVPDGY--ALSLSAKLNF   95 (106)
T ss_dssp             EEEETS--CCCCCBCEEE
T ss_pred             EEEccC--CceEEEEEEE
Confidence            999998  4444555555

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.24  E-value=4.6e-12  Score=127.06  Aligned_cols=181  Identities=14%  Similarity=0.136  Sum_probs=95.2

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe---cc-C--Cccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL---HN-S--SFDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l---~~-~--~~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|++..  ..+   .. .  .......  ..++....     ....|+|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            45578899999999999999887  6899999942  111   00 0  0000000  00111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCC-cc----eeEEEEEEcCcc-------------ccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487        329 VTDLDAGEYTCYAENIR-GN----ASGEISLDLPEI-------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIG  390 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~-G~----~~~~~~L~V~~~-------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (610)
                      ++.+|+|.|.|.+.|.. |.    ....+.|.|...             ...+.+...+....+..+..+.+.|.+.+..
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999999975 21    112346776541             0122233334333333333333333322222


Q ss_pred             eE------EEEEEeee-ccccccccc------CCccccccc--cccccceeeeeeeeccCcceeeeecCCC
Q psy10487        391 MS------FCVCRAHE-HKNKRRKRK------GKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQ  446 (610)
Q Consensus       391 ~~------~~~~~~~~-~~~~~~~~~------~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~  446 (610)
                      ..      .+.|.+.. .........      .........  ......|.|.+++.+|+|.|+|.|.|..
T Consensus       188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            21      22222221 010000000      000111111  1223479999999999999999999953

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.24  E-value=2.6e-11  Score=116.78  Aligned_cols=176  Identities=11%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             eecceEeecCceEEEEEEEEecCC----CeEEEEeC--CEEe---c-cCC-ccceeec--cCCceee-----eeeEEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE----PTILWLLN--GQVL---H-NSS-FDLLEEE--EGDALFE-----KSVSITLF  327 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~----p~v~W~~~--g~~l---~-~~~-~~~~~~~--~~~~~~~-----~~~~L~I~  327 (610)
                      .+..+.+.+|++++|.|.+.|.|.    +.+.|+|.  +..+   . ... .......  .++..+.     ....|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            356778999999999999999875    89999984  2211   1 000 0000000  0111111     13689999


Q ss_pred             ecCCCCCeEEEEEeecCCc------c---eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE
Q psy10487        328 NVTDLDAGEYTCYAENIRG------N---ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR  397 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G------~---~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (610)
                      +++.+|+|.|.|.+.|..|      .   ....+.|.|... ..+|.+........+.           .+ ..+...|.
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~-----------~g-~~~~l~C~  153 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDT-----------TG-SSVTLGCL  153 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC----------------CC-SEEEEEEE
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccccccc-----------CC-CCEEEEEE
Confidence            9999999999999999875      1   123467777531 1223222111000000           01 11233444


Q ss_pred             eeec-c---cccccccCCcccccc---c-c----ccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487        398 AHEH-K---NKRRKRKGKMKQSVS---F-N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       398 ~~~~-~---~~~~~~~~~~~~~~~---~-~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      ..+. +   ...|.+.........   . .    .....|.|..+..+| |.|+|.|.|..|.......
T Consensus       154 ~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          154 VKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             EEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            4332 2   233433322100000   0 0    112346776666645 9999999999987655443

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.23  E-value=1.4e-11  Score=108.59  Aligned_cols=94  Identities=21%  Similarity=0.299  Sum_probs=69.2

Q ss_pred             cccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--------cceeeccCCceeeeeeEEEEE
Q psy10487        256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--------DLLEEEEGDALFEKSVSITLF  327 (610)
Q Consensus       256 ~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--------~~~~~~~~~~~~~~~~~L~I~  327 (610)
                      ...++|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+.....        ...... ........+.|.|.
T Consensus        17 ~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~   95 (137)
T 3qr2_A           17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH-ATYHQHAASTISID   95 (137)
T ss_dssp             ----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEE-EEESSSEEEEEEEC
T ss_pred             CCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEe-cccccccceEEEEC
Confidence            345789999999999999999999999999999999999998765532210        000000 00001234699999


Q ss_pred             ecCCCCCeEEEEEeecCCcceeE
Q psy10487        328 NVTDLDAGEYTCYAENIRGNASG  350 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~~~~  350 (610)
                      +++.+|+|.|+|.|.|..|....
T Consensus        96 ~v~~~D~G~Y~C~a~N~~G~~~~  118 (137)
T 3qr2_A           96 TLVEEDTGTYECRASNDPDRNHL  118 (137)
T ss_dssp             SCCGGGCEEEEEEEECCTTSSSC
T ss_pred             CCCcccCEEEEEEEEecCCccce
Confidence            99999999999999999998643

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.23  E-value=8.5e-12  Score=116.85  Aligned_cols=117  Identities=24%  Similarity=0.361  Sum_probs=86.5

Q ss_pred             CCCCCCCCCCCCccCCCccc--cccccc------ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEec
Q psy10487        231 LYSHPLSCTEPGMLQTKHWD--DVKAQE------FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~--~v~~~~------~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~  302 (610)
                      .+.+.|+|.+.+........  .+....      ...+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.
T Consensus        76 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~  155 (201)
T 3s97_C           76 SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP  155 (201)
T ss_dssp             GGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC
T ss_pred             ccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC
Confidence            36678999887654433221  111111      1134666666668889999999999999999999999999998765


Q ss_pred             cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ....  ...        ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       156 ~~~~--~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          156 STAE--IST--------SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTCE--EET--------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             Ccee--ecC--------CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            4321  111        12489999999999999999999999999999998873

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.23  E-value=1.6e-12  Score=126.50  Aligned_cols=90  Identities=12%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             CCceeeeecceE--eecCceEEEEEEEEec---CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        260 PPNVTIKESMVI--REAGGNVTMSCYVYGD---PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       260 ~P~i~~~~~~~~--v~~G~~v~l~C~~~g~---P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      +|.+...+....  +.+|++++|.|.+.|.   |.| .|.|++++..+.......... ..++.+...+.|.|.+++.+|
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEK-QSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceE-cCCCcEEEEEEEEEEhhHccC
Confidence            455555544444  7799999999999987   877 899999887664321111111 111233455789999999999


Q ss_pred             CeEEEEEeecCCcceeE
Q psy10487        334 AGEYTCYAENIRGNASG  350 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~  350 (610)
                      +|.|+|.|.|..|....
T Consensus        94 ~g~Y~C~~~~~~~~~~~  110 (239)
T 1i1c_A           94 GKTFKCKVNSGAFPAPI  110 (239)
T ss_dssp             TCCEEEEEECSSSSSCE
T ss_pred             CCeEEEEEecccCCCCc
Confidence            99999999999886533

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=1.5e-11  Score=113.74  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe---CCEEecc-C
Q psy10487        230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL---NGQVLHN-S  304 (610)
Q Consensus       230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~---~g~~l~~-~  304 (610)
                      ..+.+.|+|.+.+...    ..+. ..+..+|.+...+....+.+|+.++|.|.+.|.| .|.+.|++   ++..+.. .
T Consensus        58 ~~d~G~Y~C~~~n~~~----~~~~-l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~  132 (184)
T 3b5h_A           58 DDQWGEYSCVFLPEPM----GTAN-IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG  132 (184)
T ss_dssp             GGCCEEEEEEEESTTS----CEEE-EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT
T ss_pred             hhhCeEEEEEEECCcC----cEEE-EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC
Confidence            4477889999876222    1111 1224678888877778899999999999999999 89999999   5544332 2


Q ss_pred             CccceeeccCCceeeeeeEEEEEecC-CCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ...+......    ...+.|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       133 ~~~~~~~~~~----~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          133 SESRFFVSSS----QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             GGGTEEEEEE----TTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCEEEEEec----CCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            1111111110    112489999999 999999999999999999999999884

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.23  E-value=1e-10  Score=111.96  Aligned_cols=172  Identities=13%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CC--ccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SS--FDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~--~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|..  ..   +.. ..  .......  .++....     ....|+|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            45568899999999999999876  6889999842  21   110 00  0000000  0111111     235899999


Q ss_pred             cCCCCCeEEEEEeecCCcc---eeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c-
Q psy10487        329 VTDLDAGEYTCYAENIRGN---ASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K-  402 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  402 (610)
                      ++.+|+|.|.|.+.|..+.   ....+.|.|.... .+|.+...+......+ ..            +...|...+. + 
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g-~~------------v~L~C~~~g~~P~  152 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSS-DP------------VIIGCLIHDYFPS  152 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCC-SS------------EEEEEEEEEEBSC
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCC-Cc------------EEEEEEEEeEECC
Confidence            9999999999999998653   2234577775321 2333322211111111 11            1223333322 2 


Q ss_pred             ---cccccccCCccccccc---cccc------cceeeeeeeeccCcceeeeecCCCccee
Q psy10487        403 ---NKRRKRKGKMKQSVSF---NDQE------KKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       403 ---~~~~~~~~~~~~~~~~---~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                         ...|.+.+..-.....   ...+      ..|.|......|.|.|+|.|.|..|..+
T Consensus       153 ~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          153 GTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence               2233332211000000   0111      2467777777799999999999998755

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.23  E-value=2.7e-11  Score=101.57  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-EeccCCccceeeccCCcee----eeeeEEEEEecCCCC
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLD  333 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D  333 (610)
                      .+|.+...+..+.+.+|++++|.|.+.+.|.|.+.|++++. .+......  ....++...    ...+.|.|.+++.+|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKK--ALRDNRIELVRASWHELSISVSDVSLSD   82 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEE--CSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCc--ccccCcEEEeecCCCcEEEEECCCChhH
Confidence            45777778889999999999999999999999999999876 33221110  000011010    034689999999999


Q ss_pred             CeEEEEEeecCCcceeEEEEEEcC
Q psy10487        334 AGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|+|.|.| .|..+..+.|.|.
T Consensus        83 ~G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           83 EGQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             CEEEEEEECS-SSCEEEEEEEEEE
T ss_pred             CeEEEEEEEc-CCCcEEEEEEEEE
Confidence            9999999999 8888889988884

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.6e-12  Score=104.19  Aligned_cols=82  Identities=26%  Similarity=0.466  Sum_probs=68.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...+....+.+|+.++|.|.+.|.|.|.+.|+|++..+....               .+.|.|.+++.+|+|.|+|
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C   74 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------------SPVLILPEIGPQDQGTYSC   74 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------------CSEEEEESCCTTTCEEEEC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------------CCEEEECCCCcccCEEEEE
Confidence            5777888888889999999999999999999999999988765432               1389999999999999999


Q ss_pred             EeecCCcce--eEEEEEEc
Q psy10487        340 YAENIRGNA--SGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~--~~~~~L~V  356 (610)
                      .|.|..|..  +..+.|.|
T Consensus        75 ~a~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           75 VATHSSHGPQESRAVSISI   93 (96)
T ss_dssp             EECCSSCCCEECCCEEEEE
T ss_pred             EEEeCCCCcEEEEEEEEEE
Confidence            999976643  44566665

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.22  E-value=2.8e-11  Score=99.21  Aligned_cols=86  Identities=21%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.|...+..+.+.+|++++|.|.+ +.|.|.+.|++++..+....+...... +     ....|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~-~-----~~~~L~I~~v~~~D~G~Y~C~   81 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE-G-----TRHTLTVREVGPADQGSYAVI   81 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEE-T-----TEEEEEESSCCTTCCSEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEc-C-----CEEEEEEcCCCcccCEEEEEE
Confidence            556666788899999999999999 889999999999998876543222211 1     124799999999999999999


Q ss_pred             eecCCcceeEEEEEEcC
Q psy10487        341 AENIRGNASGEISLDLP  357 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V~  357 (610)
                      |    |.....+.|.|.
T Consensus        82 a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           82 A----GSSKVKFDLKVI   94 (95)
T ss_dssp             E----TTEEEEEEEEEE
T ss_pred             E----CCceEEEEEEEe
Confidence            9    667777888773

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=1.3e-13  Score=129.99  Aligned_cols=131  Identities=23%  Similarity=0.308  Sum_probs=108.3

Q ss_pred             ccEEEcccC--CCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEc
Q psy10487         83 LQRIYLKNS--GIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL  160 (610)
Q Consensus        83 L~~L~L~~n--~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  160 (610)
                      |+.+.+.++  .+..++ ..|..+++|++|+|++|+|..++  .|.++++|++|+|++|.++.++. .+..+++|+.|+|
T Consensus        25 l~~~~l~~~~~~l~~l~-~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L  100 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI  100 (198)
T ss_dssp             CSEEECCBCCTTCCCCH-HHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEE
T ss_pred             hheeEeccccCcHhhhh-HHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEEC
Confidence            444444433  344443 37899999999999999999976  78899999999999999997754 4556789999999


Q ss_pred             cCccccccCHHHhhcCccccccccccccccccCc-ccccCCCcccEEecCCCcccccCCc
Q psy10487        161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHL  219 (610)
Q Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~N~~~c~c~l  219 (610)
                      ++|+|+.++  .+..+++|+.|++++|+++.++. ..+..+++|+.|++++|++.+.|..
T Consensus       101 ~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          101 SYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999874  58889999999999999998765 5678899999999999999887654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.22  E-value=1.8e-11  Score=116.49  Aligned_cols=128  Identities=15%  Similarity=0.141  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeec-ceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKES-MVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSF  306 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~-~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~  306 (610)
                      .+.+.|+|.+.+.........+...... -+|.+...+. .+.+.+|++++|.|.+.|.|.  +.+.|++++..+.....
T Consensus        74 ~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~  153 (213)
T 2x1w_L           74 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL  153 (213)
T ss_dssp             TTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE
T ss_pred             hcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE
Confidence            4678999998763322222112222211 2344555544 448899999999999999654  57999999876432211


Q ss_pred             -c-ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        307 -D-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       307 -~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                       . ..............+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          154 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             EEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             eccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence             0 000000000023346899999999999999999999999999999999843

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.22  E-value=2.2e-11  Score=112.35  Aligned_cols=110  Identities=20%  Similarity=0.281  Sum_probs=84.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|.|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.....   
T Consensus        70 ~d~G~Y~C~~~~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---  145 (182)
T 1rhf_A           70 SDAGRYWCQVEDGGETEISQPVWL-TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---  145 (182)
T ss_dssp             GGCEEEEEEESSCTTCEECCCEEE-EEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---
T ss_pred             ccCeEEEEEEEcCCCcEEEEEEEE-EEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---
Confidence            467789999877643322222222 23357888888888899999999999999999999 9999999988754321   


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL  356 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V  356 (610)
                                ..+.|.|.++  +|+|.|+|.|.|..|... .++.|.|
T Consensus       146 ----------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          146 ----------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ----------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ----------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence                      2358999988  589999999999999885 4788776

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.22  E-value=3.1e-11  Score=129.78  Aligned_cols=103  Identities=12%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      +|.+... +....+.+|+.++|.|.+.|.++   +.|+|  ++..+.......... ..++.+...+.|.|.+++.+|+|
T Consensus       246 ~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~-~~~g~~~~~~~L~I~~~~~~d~G  322 (475)
T 1iga_A          246 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPER-DLCGCYSVSSVLPGCAEPWNHGK  322 (475)
T ss_pred             CcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceE-CCCCCEEEEEEEEEchHHhccCC
Confidence            4555333 33334589999999999998754   69999  444433221111111 11122345678999999999999


Q ss_pred             EEEEEeecCCcceeEEEEEEcCcccccccc
Q psy10487        336 EYTCYAENIRGNASGEISLDLPEINLATTL  365 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~  365 (610)
                      .|+|.|.|..|.......+.+.....+|.+
T Consensus       323 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v  352 (475)
T 1iga_A          323 TFTCTAAYPESKTPLTATLSKSGNTFRPEV  352 (475)
T ss_pred             cEEEEEEcCCCCCceEEEeecCCCCCCCeE
Confidence            999999999998765555544322334433

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=103.68  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      ++.|...+.++.+.+|++++|.|.+.|.|. +.+.|+|+|..+....+.....+..      ...|.|.+++.+|+|.|+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~   81 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR------KYILVVREAAPSDAGEVV   81 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETT------EEEEEECSCCTTTCSCEE
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCC------EEEEEECCCCHHHCEEEE
Confidence            456777778899999999999999999885 4899999999887655432222111      248999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcc
Q psy10487        339 CYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      |.|.|    ...++.|.|.+.
T Consensus        82 C~a~~----~~~~a~L~V~~~   98 (104)
T 2eny_A           82 FSVRG----LTSKASLIVRER   98 (104)
T ss_dssp             EEETT----EEEEECEEEECC
T ss_pred             EEECC----eeEEEEEEEeCC
Confidence            99855    567788888543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.22  E-value=3.8e-11  Score=119.62  Aligned_cols=81  Identities=17%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             eeeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EEec----cC-C-ccceee--ccCCceee-----eeeEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QVLH----NS-S-FDLLEE--EEGDALFE-----KSVSIT  325 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~l~----~~-~-~~~~~~--~~~~~~~~-----~~~~L~  325 (610)
                      +.. +..+.+.+|++++|.|.+.+.  +.+.+.|++..  ....    .. . ......  ..++....     ....|.
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (280)
T 3fku_X            4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD   82 (280)
T ss_dssp             EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred             EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence            444 677889999999999999886  66899999732  1110    00 0 000000  00111111     124899


Q ss_pred             EEecCCCCCeEEEEEeecC
Q psy10487        326 LFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~  344 (610)
                      |.+++.+|+|.|.|.+.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           83 LRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             ECSCCSTTCEECCEEECSS
T ss_pred             ECCCChhhCEEEEEEEecC
Confidence            9999999999999999997

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.21  E-value=9e-12  Score=115.93  Aligned_cols=118  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.+..++.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus        72 ~d~G~Y~C~~~~~~~~~~~~~~~l~-v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~  150 (191)
T 1epf_A           72 DDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI  150 (191)
T ss_dssp             GGCEEEEEEEEETTTEEEEEEEEEE-EECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEE
T ss_pred             ccCEEEEEEEEcCCCcceEEEEEEE-eecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEE
Confidence            4678899988776543322222222 235677877788888999999999999999999999999999988654332222


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ..       ..+.|.|.+++.+|+|.|+|.|.|..|.......+.|
T Consensus       151 ~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          151 VL-------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EC-------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             Ee-------cCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            21       1237999999999999999999999976554444433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.21  E-value=6.4e-12  Score=118.87  Aligned_cols=118  Identities=21%  Similarity=0.318  Sum_probs=87.4

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|.|.+.+..+......+......-++.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++..+....... 
T Consensus        82 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~-  160 (212)
T 2v9r_A           82 PDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-  160 (212)
T ss_dssp             CSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTE-
T ss_pred             ccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceE-
Confidence            467789998876543322222222222235556666677889999999999999 999999999999999887544211 


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-EEEEEcC
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-EISLDLP  357 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~  357 (610)
                      .        ...+.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.
T Consensus       161 ~--------~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          161 T--------IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             E--------EETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             E--------ccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence            1        22348999999999999999999999998755 4888884

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.21  E-value=9.8e-11  Score=99.28  Aligned_cols=90  Identities=18%  Similarity=0.307  Sum_probs=70.9

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..+|.+...+....+.+|++++|.|.+.|.  |.+.|+|++..+....+.....+..      ...|.|.+++.+|+|.|
T Consensus        17 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y   88 (113)
T 2edh_A           17 ALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGA------RCELQIRGLVAEDAGEY   88 (113)
T ss_dssp             CSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETT------EEEEEECSCCSTTCEEE
T ss_pred             cCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCC------EEEEEECCCChhhCEEE
Confidence            346788888888999999999999999775  7899999999887554322221111      23799999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcCcc
Q psy10487        338 TCYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      +|.|    |.....+.|.|.+.
T Consensus        89 ~C~a----~~~~~~~~l~V~~~  106 (113)
T 2edh_A           89 LCMC----GKERTSAMLTVRAM  106 (113)
T ss_dssp             EEEE----TTEEEEEEEEECCC
T ss_pred             EEEe----CCCCEEEEEEEeCC
Confidence            9999    77888889988543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-11  Score=102.54  Aligned_cols=90  Identities=18%  Similarity=0.291  Sum_probs=71.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ++.+...+.++.+.+|++++|.|.+.|.|.|.+.|+|+|..+....+.......+.     ...|.|.+++.+|+|.|+|
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C   87 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG-----YHVLTLRQLALKDSGTIYF   87 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTT-----BCCBEECSCCTTTCEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCC-----EEEEEEcCCChhhCEEEEE
Confidence            34677777889999999999999999999999999999998876654333212111     2379999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCc
Q psy10487        340 YAENIRGNASGEISLDLPE  358 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~  358 (610)
                      .    +|.....+.|.|.+
T Consensus        88 ~----~g~~~~~~~L~V~~  102 (115)
T 2cr6_A           88 E----AGDQRASAALRVTE  102 (115)
T ss_dssp             E----ETTEECCEEEEEEC
T ss_pred             E----ECCeeEEEEEEEEC
Confidence            9    46777778888853

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.7e-11  Score=100.00  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=72.9

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|++++|.|. .|.|.|.+.|++++..+....+..... ++     ....|.|.+++.+|+|.|+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~   79 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQ-EG-----LTLRLTISALEKADSDTYT   79 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEE-ET-----TEEEEEEESCCTTTCSEEE
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEe-CC-----CEEEEEECCCCcccCEEEE
Confidence            4678888888999999999999999 589999999999998887654322211 11     1238999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCccccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINLA  362 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~~  362 (610)
                      |.    .|.....+.|.|.+.+.+
T Consensus        80 C~----~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           80 CD----IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             EE----CSSCBCCEEEEEECSCCC
T ss_pred             EE----eCCceEEEEEEEeCccCC
Confidence            98    677777888888654443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.20  E-value=1.4e-11  Score=115.22  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCc-----eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN-----VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~-----i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|+|.+.+..+.. ...+.... ..+|.     +...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....
T Consensus        72 ~d~G~Y~C~~~n~~g~~-~~~~~l~V-~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~  149 (197)
T 2j8h_A           72 DDATVYQVRATNQGGSV-SGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG  149 (197)
T ss_dssp             GGCSEEEEEEEETTEEE-EEEEEEEE-EEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSS
T ss_pred             HhCEEEEEEEEECCCce-eEEEEEEE-cCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCC
Confidence            36778999886653321 11111111 11222     2223355678899999999999999999999999999887554


Q ss_pred             ccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +.......      ..+.|.|.+ ++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       150 ~~~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          150 HYQVIVTR------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SCEEEECS------SEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEcC------CceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            33222211      235899999 99999999999999999999999998873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.20  E-value=8.1e-11  Score=123.23  Aligned_cols=166  Identities=16%  Similarity=0.292  Sum_probs=125.2

Q ss_pred             cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487         37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS  113 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs  113 (610)
                      ..+...+ .++.|+...   ..+|+.++|.+|.++.++..+|.   ..+|+.+.|.+ ++..|...+|.++.+|+.|+|.
T Consensus       160 ~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          160 QEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred             eEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence            3444443 566665432   24788999988889888888886   46888888874 4888888888888888888888


Q ss_pred             CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcccc-----ccCHHHhhcCcccccccccccc
Q psy10487        114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH-----SVHKDALIHLTALESLNLNGNR  188 (610)
Q Consensus       114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~  188 (610)
                      .| +..+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.+++.+|.+.     .+...+|.++.+|+.++|. +.
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred             CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence            64 77777778877 67888888 45577777778888888888888776655     5667778888888888887 44


Q ss_pred             ccccCcccccCCCcccEEecCCC
Q psy10487        189 LKHLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       189 l~~~~~~~~~~~~~L~~l~l~~N  211 (610)
                      ++.+...+|..+.+|+.+.+..|
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT
T ss_pred             eEEEhhhhhcCCCCccEEEECcc
Confidence            77777778877778888777654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.19  E-value=7.1e-11  Score=114.80  Aligned_cols=93  Identities=22%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--------------CCEEeccCCc--cceeeccCCceeeeeeEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--------------NGQVLHNSSF--DLLEEEEGDALFEKSVSI  324 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--------------~g~~l~~~~~--~~~~~~~~~~~~~~~~~L  324 (610)
                      +.+...+..+.+.+|++++|.| ..+.|.+.+.|+|              ++........  .+.......   .....|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~sL   78 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD---GSYFTL   78 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT---TSCEEE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc---CceEEE
Confidence            4556677888999999999999 7788999999998              1111111100  000000000   113489


Q ss_pred             EEEecCCCCCeEEEEEeecC----CcceeEEEEEEcC
Q psy10487        325 TLFNVTDLDAGEYTCYAENI----RGNASGEISLDLP  357 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N~----~G~~~~~~~L~V~  357 (610)
                      .|.+++.+|+|.|.|.+.+.    .+.....+.|.|.
T Consensus        79 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~  115 (245)
T 4ei6_B           79 KIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVL  115 (245)
T ss_dssp             EECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEE
T ss_pred             EECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEe
Confidence            99999999999999999963    2333445566664

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.19  E-value=5.6e-11  Score=112.09  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=62.9

Q ss_pred             ceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      .+.+.+|++++|.|.+ |.|.|  .|.|++.+..+   ..  ...      ...++.|.|.+++.+|+|.|.|.|.|..|
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~   83 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQS------DTGRSVLTVRNASLSAAGTRVCVGSCGGR   83 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEE------ESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEe------cCCccEEEECccCcccCceEEEEEEeCCC
Confidence            3688999999999999 99998  99999954333   11  111      12346899999999999999999999999


Q ss_pred             ceeEEEEEEcCc
Q psy10487        347 NASGEISLDLPE  358 (610)
Q Consensus       347 ~~~~~~~L~V~~  358 (610)
                      ...+.+.|.|..
T Consensus        84 ~~~~~~~ltV~~   95 (210)
T 1gsm_A           84 TFQHTVQLLVYA   95 (210)
T ss_dssp             EEEEEEEEEEEB
T ss_pred             ceEEEEEEEEEe
Confidence            988899999843

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.19  E-value=2.1e-11  Score=114.02  Aligned_cols=112  Identities=18%  Similarity=0.225  Sum_probs=86.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|.|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......  
T Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--  154 (195)
T 2c5d_C           78 SDTGQYQCLVFLGHQTFVSQPGYV-GLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--  154 (195)
T ss_dssp             TTCEEEEEEEEETTEEEECCCEEE-EECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--
T ss_pred             cCCcEEEEEEEeCCCceecccEEE-EEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--
Confidence            467789998876543222121222 23456888888888899999999999999999999 99999999887654421  


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL  356 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V  356 (610)
                               ...+.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 ---------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 ---------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ---------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence                     123589999987  89999999999999985 7888887

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=7.8e-12  Score=103.87  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=67.4

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc--c-eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD--L-LEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~--~-~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      -+|.+...+..+.+.+|+.++|.|.+.|.| |.+.|+|+|..+......  + .....+     ....|.|.+++.+|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G   80 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRG   80 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCS
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCE
Confidence            357777778889999999999999999999 999999999988765421  1 111111     1247999999999999


Q ss_pred             EEEEEeecCCcceeEEEEEEc
Q psy10487        336 EYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .|+|.|.|    ...++.|.|
T Consensus        81 ~Y~C~a~n----~~~~~~l~V   97 (101)
T 2edk_A           81 RYQVITNG----GQCEAELIV   97 (101)
T ss_dssp             BEEEECSS----CEECCBEEE
T ss_pred             EEEEEEcC----CcEEEEEEE
Confidence            99999998    334445555

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.19  E-value=2.2e-11  Score=116.28  Aligned_cols=113  Identities=15%  Similarity=0.183  Sum_probs=85.5

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc--------------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA--------------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL  296 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~--------------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~  296 (610)
                      .+.+.|+|.+.+..+......+......              -+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++
T Consensus        75 ~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~  154 (218)
T 3k0w_A           75 KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK  154 (218)
T ss_dssp             GGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEE
T ss_pred             hhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEE
Confidence            3567889988765443211111111111              12677777788899999999999999999999999999


Q ss_pred             CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487        297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLPE  358 (610)
Q Consensus       297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  358 (610)
                      ++..+.....               +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       155 ~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          155 NELPLTHETK---------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             TTEECTTCCS---------------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             CCEECCCCCC---------------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            9988765431               37999999999999999999999987 56688888854

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.19  E-value=2.2e-13  Score=144.74  Aligned_cols=115  Identities=14%  Similarity=0.238  Sum_probs=73.9

Q ss_pred             CCCCCCCCCccCCCcc-cccccccccC-----C----CceeeeecceE--eecCceEEEEEEEEecC----CCeEEEEeC
Q psy10487        234 HPLSCTEPGMLQTKHW-DDVKAQEFAC-----P----PNVTIKESMVI--REAGGNVTMSCYVYGDP----EPTILWLLN  297 (610)
Q Consensus       234 ~~~~C~a~~~l~g~~~-~~v~~~~~~c-----~----P~i~~~~~~~~--v~~G~~v~l~C~~~g~P----~p~v~W~~~  297 (610)
                      +.|+|.+.+..+.... ..+......|     +    |.+...+....  +.+|+.++|.|.+.|.|    .+.|+|+++
T Consensus       192 g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~  271 (434)
T 1igy_B          192 ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVD  271 (434)
T ss_dssp             SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSS
T ss_pred             CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeC
Confidence            8899998877654321 1221111011     0    45544443222  78999999999999984    358999999


Q ss_pred             CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        298 GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       298 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      +..+......... ...++.+...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  322 (434)
T 1igy_B          272 NVEVHTAQTQPRE-EQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP  322 (434)
T ss_dssp             SCCBCCCSCCCCC-CCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred             CcccCCcccCcce-eCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCc
Confidence            9876543211111 11111223346899999999999999999999999753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.18  E-value=1.3e-12  Score=139.78  Aligned_cols=176  Identities=16%  Similarity=0.161  Sum_probs=104.9

Q ss_pred             cEEEcCCCCCCccCc-cc-------CCCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccc-----hh
Q psy10487         37 KSALCKDANFTALPS-TL-------DSDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVH-----RD   99 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l-------~~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~-----~~   99 (610)
                      +.++..++.+..... .+       ..+|++|+|++|.++...    ...+.  .+++|++|+|++|.+....     +.
T Consensus       173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHH
Confidence            567777776654321 12       237888888888777643    23333  4677888888888776543     22


Q ss_pred             hhcCCCCCcEEEccCCCCCCCC----cccccCCCCCcEEEeeCccccccCcCcC-----CCCCCccEEEccCccccccC-
Q psy10487        100 TFKYLTILVEVDLSDNQIAWLH----QDTFLGNDRLKVLYLNGNPITELRAGQF-----PKLPYLKTIELQHCQIHSVH-  169 (610)
Q Consensus       100 ~f~~l~~L~~LdLs~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~L~~n~l~~~~-  169 (610)
                      .+..+++|++|+|++|+++...    +..+..+++|++|+|++|.+.......+     ...++|+.|+|++|.++... 
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  330 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC  330 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence            3345777888888888777632    3345557777778887777764322111     22356777777777766542 


Q ss_pred             ---HHHhhcCccccccccccccccccCccccc-----CCCcccEEecCCCccc
Q psy10487        170 ---KDALIHLTALESLNLNGNRLKHLSESVFF-----PTPNLKTLSLDGNPWC  214 (610)
Q Consensus       170 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~l~l~~N~~~  214 (610)
                         +..+..+++|+.|++++|.+.......+.     ..++|+.|++++|.+.
T Consensus       331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence               23445556777777777766554322221     1456667777666543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.18  E-value=1.4e-11  Score=117.06  Aligned_cols=121  Identities=17%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccc------cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEF------ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~------~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|+|.+.+..+.. ...+.....      ...|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus        74 ~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~  152 (212)
T 2yd6_A           74 RDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS  152 (212)
T ss_dssp             TTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC---
T ss_pred             CCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc
Confidence            46778999887655431 111111111      12366777777788899999999999999999999999999988754


Q ss_pred             Ccc-ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487        305 SFD-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL  356 (610)
Q Consensus       305 ~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V  356 (610)
                      ... .......    ...+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus       153 ~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~  202 (212)
T 2yd6_A          153 NNNGRIKQLRS----ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV  202 (212)
T ss_dssp             ---CCEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCceEEEEec----CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEE
Confidence            321 1111000    1136899999999999999999999999874 4566666

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.18  E-value=1e-11  Score=117.32  Aligned_cols=127  Identities=20%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             CCCCCCCCCCCCccCCCc-ccccccccccCCCceeeeecceEeecCceEEEEEE-EEecCCCeEEEEeCCE-EeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQ-VLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~-~~g~P~p~v~W~~~g~-~l~~~~~~  307 (610)
                      .+.+.|+|.+.+..+... ...+.. .+..+|.+...+....+.+|+.++|.|. +.|.|.|.+.|++++. .+......
T Consensus        75 ~D~G~Y~C~~~~~~g~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~  153 (212)
T 1f97_A           75 KDNGEYTCMVSEEGGQNYGEVSIHL-TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK  153 (212)
T ss_dssp             GGCEEEEEEEEETTSSSEEEEEEEE-EEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----
T ss_pred             ccCeEEEEEEEccCCCcccEEEEEE-EEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccc
Confidence            467789998866543111 111221 2235666666666678899999999999 7999999999999999 77654432


Q ss_pred             ceeeccCCcee-eeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCc
Q psy10487        308 LLEEEEGDALF-EKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPE  358 (610)
Q Consensus       308 ~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~  358 (610)
                      ........... ...+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            11111110000 123589999999999999999999999988  5677777743

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.18  E-value=1.2e-11  Score=115.03  Aligned_cols=117  Identities=25%  Similarity=0.330  Sum_probs=87.7

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.+..+......+ ...+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .
T Consensus        72 ~d~G~Y~C~~~~~~~~~~~~~~-~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~  149 (192)
T 2iep_A           72 SDDGIYCCTANNGVGGAVESCG-ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA-V  149 (192)
T ss_dssp             GGCEEEEEEEECSSSCCEEEEE-EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEE-E
T ss_pred             ccCeEEEEEEEcCCCceeEeEE-EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEE-E
Confidence            4677899988765543222111 1222346777777778889999999999999999999999999999887554311 1


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcC
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLP  357 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~  357 (610)
                              ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       150 --------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          150 --------LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             --------CTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             --------ecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence                    112479999999999999999999999987 456777773

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.18  E-value=9.7e-12  Score=122.98  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSIT  325 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~  325 (610)
                      +.+.+...+..+.+.+|++++|.|.+.+.|     .+.+.|++..  ..   +............++....   ....|+
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            456777778889999999999999999887     5899999842  21   1100000000000111111   134899


Q ss_pred             EEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487        326 LFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP  357 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~  357 (610)
                      |.+++.+|+|.|.|.|.|..+. ....+.|.|.
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~  126 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIK  126 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC--
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEc
Confidence            9999999999999999998653 2234556654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.17  E-value=1.5e-10  Score=111.07  Aligned_cols=92  Identities=11%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CC--ccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SS--FDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~--~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +.. ..  .......  .++....     ....|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            34677899999999999999876  5889999842  21   110 00  0000000  1111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCc------ceeEEEEEEcC
Q psy10487        329 VTDLDAGEYTCYAENIRG------NASGEISLDLP  357 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G------~~~~~~~L~V~  357 (610)
                      ++.+|+|.|.|.+.|..|      .....+.|.|.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~  120 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVS  120 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEEC
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEc
Confidence            999999999999999764      11234577775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=5.1e-12  Score=135.27  Aligned_cols=175  Identities=15%  Similarity=0.164  Sum_probs=104.1

Q ss_pred             EEEcCCCCCCccCcc--c--CCCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccchhhh-cCCC---
Q psy10487         38 SALCKDANFTALPST--L--DSDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KYLT---  105 (610)
Q Consensus        38 ~~~C~~~~l~~lP~~--l--~~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f-~~l~---  105 (610)
                      .++....+++..+..  +  .++|++|+|++|.|+...    ...+.  .+++|++|+|++|.+.......+ ..+.   
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~   84 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPS   84 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence            345555555543311  1  246777777777766432    22333  46777777777777765443333 3344   


Q ss_pred             -CCcEEEccCCCCCCCC----cccccCCCCCcEEEeeCccccccCcC-----cCCCCCCccEEEccCccccccC----HH
Q psy10487        106 -ILVEVDLSDNQIAWLH----QDTFLGNDRLKVLYLNGNPITELRAG-----QFPKLPYLKTIELQHCQIHSVH----KD  171 (610)
Q Consensus       106 -~L~~LdLs~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~-----~~~~l~~L~~L~L~~n~l~~~~----~~  171 (610)
                       +|++|+|++|+|....    +..|..+++|++|+|++|.++.....     .+...++|+.|+|++|+++...    +.
T Consensus        85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence             5777777777776432    45667777777777777776643221     1223456777777777777643    33


Q ss_pred             HhhcCccccccccccccccccCccccc-----CCCcccEEecCCCccc
Q psy10487        172 ALIHLTALESLNLNGNRLKHLSESVFF-----PTPNLKTLSLDGNPWC  214 (610)
Q Consensus       172 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~l~l~~N~~~  214 (610)
                      .+..+++|+.|++++|.+.......+.     ..++|+.|++++|.+.
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            455567777777777776654332221     2446777777777654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.17  E-value=1.2e-11  Score=117.60  Aligned_cols=125  Identities=17%  Similarity=0.264  Sum_probs=87.2

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+..+......+......-+|.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++..+........
T Consensus        79 ~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~  158 (217)
T 2vr9_A           79 QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF  158 (217)
T ss_dssp             BCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC--
T ss_pred             ccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccc
Confidence            467889998876544322222222222235666667778889999999999999 8999999999999998874332110


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      . ..........+.|.|.+++.+|+|.|+|.|.|..|....++.+.+
T Consensus       159 ~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          159 G-ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             --CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             c-cCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence            0 111111223358999999999999999999999999877655444

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.17  E-value=2.1e-10  Score=122.62  Aligned_cols=177  Identities=11%  Similarity=0.083  Sum_probs=98.3

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---ecc---CCccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHN---SSFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~---~~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|.  +..   +..   .........  .++....     ..+.|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            45567889999999999999987  789999984  321   100   000000000  0111111     125899999


Q ss_pred             cCCCCCeEEEEEeecCCc------------ceeEEEEEEcCcc-cccccccc-CCcceeehhhhHHHHHHHHHhheeEEE
Q psy10487        329 VTDLDAGEYTCYAENIRG------------NASGEISLDLPEI-NLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFC  394 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G------------~~~~~~~L~V~~~-~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (610)
                      ++.+|+|.|+|.|.|..|            .....+.|.|... ..+|.+.. .+......+ ..            +.+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g-~~------------v~L  152 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSG-GT------------AAL  152 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTT-CC------------EEE
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCC-Cc------------EEE
Confidence            999999999999999876            2334556776432 12232221 111111111 11            133


Q ss_pred             EEEeeec-c---cccccccCCccc--cc-cccccc------cceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        395 VCRAHEH-K---NKRRKRKGKMKQ--SV-SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       395 ~~~~~~~-~---~~~~~~~~~~~~--~~-~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .|...+. +   ...|.+......  .. .....+      ..|.|.++..+| |.|+|.|.|..|.......+.
T Consensus       153 ~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~  226 (457)
T 1hzh_H          153 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAE  226 (457)
T ss_dssp             EEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEec
Confidence            4444333 2   223433221100  00 000111      268888888889 999999999988766555544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.17  E-value=2.9e-11  Score=133.38  Aligned_cols=100  Identities=17%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             cceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCc--cc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSF--DL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~--~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..+.+.+|++++|.|.+ .|.|.|.|.|++++..+.....  .. .....++......++|.|.+++.+|+|.|+|++.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            34678899999999999 8999999999998653211100  00 00001111222335899999999999999999999


Q ss_pred             CCcce-eEEEEEEcCcccccccccc
Q psy10487        344 IRGNA-SGEISLDLPEINLATTLSK  367 (610)
Q Consensus       344 ~~G~~-~~~~~L~V~~~~~~p~~~~  367 (610)
                      ..|.. ...+.|.|...+..|.+..
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~  478 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVD  478 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEES
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEc
Confidence            99987 7788998865444444443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.16  E-value=6.4e-11  Score=116.89  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeecc----CCcee----eeeeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEE----GDALF----EKSVSITL  326 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~----~~~~~----~~~~~L~I  326 (610)
                      .+.+...+..+.+.+|++++|.|.+. .+.+.+.|+|  .+....   ...........    ++...    ...+.|+|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            35566667788999999999999986 6889999998  222110   00000000000    11111    11458999


Q ss_pred             EecCCCCCeEEEEEeecC--CcceeEEEEEEcC
Q psy10487        327 FNVTDLDAGEYTCYAENI--RGNASGEISLDLP  357 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~--~G~~~~~~~L~V~  357 (610)
                      .+++.+|+|.|+|.+.|.  .+.....+.|.|.
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  137 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVL  137 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEe
Confidence            999999999999999984  3344445566664

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.16  E-value=2.3e-10  Score=112.62  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cC--Cccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NS--SFDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~--~~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.|  .+.|.|+|+.  ..+.    ..  .......  ..++....     ....|+|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            35677899999999999999887  6899999852  2111    00  0000000  01111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCcc---eeEEEEEEcCc
Q psy10487        329 VTDLDAGEYTCYAENIRGN---ASGEISLDLPE  358 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~  358 (610)
                      ++.+|+|.|.|.+.|..+.   ....+.|.|..
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            9999999999999997541   22345777753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.15  E-value=8.4e-11  Score=98.23  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             CCCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        259 CPPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       259 c~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+|.|...+.. +.+.+|+.++|.|.+ +.|.|.+.|+|+|..+...........++.     ...|.|.+++.+|+|.|
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y   87 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAAY   87 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETT-----EEEEEECSCSSSSCEEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCC-----EEEEEECCCCcccCEEE
Confidence            45777666655 789999999999999 899999999999998876521111111111     23899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.|    ...++.|.|
T Consensus        88 ~C~a~~----~~~~~~l~V  102 (104)
T 1pd6_A           88 QCVVGG----EKCSTELFV  102 (104)
T ss_dssp             EEEETT----EEECCEEEE
T ss_pred             EEEECC----CcEEEEEEE
Confidence            999944    445556655

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.15  E-value=1.5e-11  Score=116.27  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCE--EeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQ--VLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~--~l~~~~~~  307 (610)
                      .+.+.|.|.+.+..+. ....+... +..+|.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++.  .+....  
T Consensus        94 ~D~G~Y~C~~~~~~~~-~~~~~~l~-V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~--  169 (214)
T 3jz7_A           94 SDIGTYQCKVKKAPGV-ANKKFLLT-VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW--  169 (214)
T ss_dssp             GGCEEEEEEEEETTEE-EEEEEEEE-EECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGG--
T ss_pred             hhCeEEEEEEEeCCCc-cccEEEEE-EEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccc--
Confidence            4678899988654332 12222222 2345665555555568899999999999 899999999999543  332211  


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ...        ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       170 ~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          170 LAE--------MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             GGG--------TTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             eec--------cCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            111        112489999999999999999999999999999999884

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-10  Score=97.37  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC----------ccceeeccCCceeeeeeEEEEEec
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS----------FDLLEEEEGDALFEKSVSITLFNV  329 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~----------~~~~~~~~~~~~~~~~~~L~I~~v  329 (610)
                      +|.|...+.++.+.+|+.++|.|.+.+  .|.+.|+|||..+..+.          +..+ ..++.     ...|+|.++
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i-~~~g~-----~~~L~I~~v   79 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI-EQKGL-----QHRLILHAV   79 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE-CCBTT-----EEEEEEESC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE-EeCCc-----EEEEEECCC
Confidence            467778889999999999999999998  78899999999998765          2111 11111     238999999


Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487        330 TDLDAGEYTCYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      +.+|+|.|+|..-+   ....++.|.|.+.
T Consensus        80 ~~~D~G~Y~~~~~~---~~~ssA~L~V~~~  106 (112)
T 2e6q_A           80 KHQDSGALVGFSCP---GVQDSAALTIQES  106 (112)
T ss_dssp             CSTTCSEEEEEEET---TEEEEEEEEEECS
T ss_pred             CHHHCccEEEEEEC---CeeEEEEEEEeCC
Confidence            99999999774433   4567888888543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.15  E-value=2.7e-10  Score=108.93  Aligned_cols=170  Identities=11%  Similarity=0.093  Sum_probs=90.4

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec----cCC----ccceee--ccCCceee-----eeeEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH----NSS----FDLLEE--EEGDALFE-----KSVSITL  326 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~----~~~----~~~~~~--~~~~~~~~-----~~~~L~I  326 (610)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|++.  +....    ...    ......  ..++....     ....|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            45567899999999999999844  688999973  21110    000    000000  00111111     1236999


Q ss_pred             EecCCCCCeEEEEEeecCC--cceeEEEEEEcCc-cccccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-c
Q psy10487        327 FNVTDLDAGEYTCYAENIR--GNASGEISLDLPE-INLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-H  401 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~~--G~~~~~~~L~V~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  401 (610)
                      .+++.+|+|.|.|.+.|..  ......+.|.|.. ....|.+. ..+... ..+. .            +...|...+ .
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~-~------------v~L~C~~~~~~  151 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDG-N------------VVIACLVQGFF  151 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTT-E------------EEEEEEEEEEB
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCC-C------------EEEEEEEEeeE
Confidence            9999999999999999974  2234445666642 22333332 111111 1111 1            123343333 2


Q ss_pred             cc-ccccccCCcccccc-------c-c-----ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        402 KN-KRRKRKGKMKQSVS-------F-N-----DQEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       402 ~~-~~~~~~~~~~~~~~-------~-~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      +. .....|.+.+..+.       . .     .....|.|..+...|.|.|+|.|.|..|..
T Consensus       152 P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          152 PQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             SSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            21 11122222222110       0 0     111247777777789999999999988764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.15  E-value=5.9e-11  Score=116.62  Aligned_cols=81  Identities=15%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cCC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NSS--FDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~~--~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.|.+  .+.+.|++..  ..+.    ...  ......  ..++..+.     ....|+|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            45567889999999999999876  6889999842  2110    000  000000  01111111     135899999


Q ss_pred             cCCCCCeEEEEEeecCCc
Q psy10487        329 VTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G  346 (610)
                      ++.+|+|.|.|.+.|..|
T Consensus        86 v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             CCGGGCEEEEEEEECCSS
T ss_pred             CChhhCEEEEEEEecCCC
Confidence            999999999999999875

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.14  E-value=2.7e-11  Score=117.88  Aligned_cols=84  Identities=17%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             ceeeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE---ec-cCCccceee----ccCCceee-----eeeEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV---LH-NSSFDLLEE----EEGDALFE-----KSVSI  324 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~---l~-~~~~~~~~~----~~~~~~~~-----~~~~L  324 (610)
                      .+...+..+.+.+|++++|.|.+.+.  +.+.+.|+|..  ..   +. .........    ..++....     ....|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            34556778889999999999999986  67899999842  21   11 000000000    01111111     24589


Q ss_pred             EEEecCCCCCeEEEEEeecCC
Q psy10487        325 TLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +|.+++.+|+|.|.|.+.|..
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~  103 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQ  103 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEEC
T ss_pred             EECCCCcccCEEEEEeeecCC
Confidence            999999999999999999863

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.14  E-value=8.6e-11  Score=113.87  Aligned_cols=91  Identities=13%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--C------------EEeccCCc-cce-eeccCCceeeeeeEEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--G------------QVLHNSSF-DLL-EEEEGDALFEKSVSIT  325 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g------------~~l~~~~~-~~~-~~~~~~~~~~~~~~L~  325 (610)
                      .+...+..+.+.+|++++|.|.+.+ |.+.+.|+|.  +            ........ .+. .....    .....|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~sL~   78 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD----DYHSEMN   78 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECT----TSCEEEE
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCC----CCEEEEE
Confidence            4556677889999999999999876 8889999982  1            11111000 000 00000    1235899


Q ss_pred             EEecCCCCCeEEEEEeecC---CcceeEEEEEEcC
Q psy10487        326 LFNVTDLDAGEYTCYAENI---RGNASGEISLDLP  357 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~---~G~~~~~~~L~V~  357 (610)
                      |.+++.+|+|.|.|.+.+.   .+.....+.|.|.
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  113 (240)
T 3q5y_A           79 MSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVL  113 (240)
T ss_dssp             ECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEE
T ss_pred             ECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEe
Confidence            9999999999999999843   2233344556664

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.14  E-value=8.1e-11  Score=115.29  Aligned_cols=180  Identities=10%  Similarity=0.081  Sum_probs=96.2

Q ss_pred             eecceEeecCceEEEEEEEEe--cCCCeEEEEeCC--EE--ec--c--CCccceee--ccCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYG--DPEPTILWLLNG--QV--LH--N--SSFDLLEE--EEGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g--~~--l~--~--~~~~~~~~--~~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.+.+  .+.+.+.|+|..  ..  ..  .  ........  ..++....     ....|+|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            456778999999999999987  346789999832  11  11  0  00000000  00111111     224699999


Q ss_pred             cCCCCCeEEEEEeecCC----cceeEEEEEEcC-ccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc
Q psy10487        329 VTDLDAGEYTCYAENIR----GNASGEISLDLP-EINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK  402 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~----G~~~~~~~L~V~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  402 (610)
                      ++.+|+|.|.|.+.|..    +.....+.|.|. .....|.+...........            ...+...|...+ .+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~------------g~~v~L~C~~~g~~P  153 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQT------------NSMVTLGCLVKGYFP  153 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------------------CCEEEEEEEEEEEBS
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCC------------CCcEEEEEEEeeEeC
Confidence            99999999999999862    333444567774 2223333321111100000            111133444333 22


Q ss_pred             ---cccccccCCccc-----cc---cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        403 ---NKRRKRKGKMKQ-----SV---SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       403 ---~~~~~~~~~~~~-----~~---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                         ...|.+.+....     ..   ......+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus       154 ~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          154 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence               233433322100     00   000112457777777778 99999999999987776666543

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.13  E-value=4.7e-11  Score=99.40  Aligned_cols=88  Identities=22%  Similarity=0.394  Sum_probs=69.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.+...+..+.+.+|++++|.|.+.|.|.| +.|++++..+....+..... ++     ....|.|.+++.+|+|.|+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~   79 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-EG-----AMLELVVRNLRPQDSGRYS   79 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE-CS-----SEEEEEECSCCTTTCCCEE
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE-cC-----CEEEEEEccCCcccCEEEE
Confidence            46778777888999999999999999999999 99999998876544322221 11     1236999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |.    .|.....+.|.|.
T Consensus        80 C~----~g~~~~~~~l~V~   94 (103)
T 2e7b_A           80 CS----FGDQTTSATLTVT   94 (103)
T ss_dssp             EE----CSSCBCCBCEEEE
T ss_pred             EE----ECCcEEEEEEEEE
Confidence            98    5666677777774

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.13  E-value=8e-11  Score=116.41  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---c-CC
Q psy10487        232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---N-SS  305 (610)
Q Consensus       232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~-~~  305 (610)
                      +...|.|.+.+..++..        ..+...+...+..+.+.+|++++|.|.+.+ +.+.+.|+|  .+....   . ..
T Consensus         7 ~~~~y~~~~~~~~g~~~--------~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~   77 (270)
T 3qib_D            7 DLIAYLKQATKGGGGSG--------GGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQN   77 (270)
T ss_dssp             -----------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEET
T ss_pred             hHHHHHHHHhccCCccc--------cccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECC
Confidence            45567787765443321        124456677788899999999999999866 788999998  221110   0 00


Q ss_pred             cc----------ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcC
Q psy10487        306 FD----------LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG----NASGEISLDLP  357 (610)
Q Consensus       306 ~~----------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~  357 (610)
                      ..          +......   ......|.|.+++.+|+|.|.|.+.|..+    .....+.|.|.
T Consensus        78 ~~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~  140 (270)
T 3qib_D           78 QEVLQQIDMTEKRFSAECP---SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVL  140 (270)
T ss_dssp             TEEEEECHHHHHHEEEECC---TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEE
T ss_pred             CCceecCCccCCcEEEEeC---CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEc
Confidence            00          0000000   01235899999999999999999997432    23344556664

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.13  E-value=5.8e-11  Score=112.24  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=84.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.+...+............-++..........+.+|+.+.+.|.+.|.|.|.|+|++++..+......   
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~---  165 (218)
T 4frw_A           89 ADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF---  165 (218)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE---
T ss_pred             HHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE---
Confidence            36678888765544333222222222222333344456667788999999999999999999999998876543321   


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      ...+  .....+.|.|.++..+|+|.|+|+|.|.+|.....+.+.|
T Consensus       166 ~~~~--~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          166 KHSR--SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             ECSS--SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ecCC--cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            1111  2244568999999999999999999999999887777776

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.8e-10  Score=95.53  Aligned_cols=88  Identities=23%  Similarity=0.342  Sum_probs=66.3

Q ss_pred             CCceeeeecc---eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~---~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+...+..   +.+.+|+.+.|.|.+. .|.|.+.|+|+|..+....+.......      ....|.|.+++.+|+|.
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~   82 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED------TVRRLVLPAVQLEDSGE   82 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECS------SEEEEEESSCCTTTCEE
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECC------CEEEEEECCCCcccCEE
Confidence            4555555544   6788999999999995 899999999999988765432222111      12489999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcCc
Q psy10487        337 YTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |+|.|.|    .+..+.|.|.+
T Consensus        83 Y~C~a~n----~~~~~~l~V~~  100 (113)
T 2cpc_A           83 YLCEIDD----ESASFTVTVTE  100 (113)
T ss_dssp             EEEESSS----CEEEEEEEEEC
T ss_pred             EEEEEec----CcEEEEEEEec
Confidence            9999999    55677777743

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=115.66  Aligned_cols=86  Identities=21%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---ecc-CC--ccceee--ccCCcee----eeeeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHN-SS--FDLLEE--EEGDALF----EKSVSIT  325 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~-~~--~~~~~~--~~~~~~~----~~~~~L~  325 (610)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|++  ..   +.. ..  ......  ..++...    .....|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            466777788899999999999999999899999999853  11   100 00  000000  0011111    1235899


Q ss_pred             EEecCCCCCeEEEEEeecCC
Q psy10487        326 LFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       326 I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      |.+++.+|+|.|+|.|.|..
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~  123 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLT  123 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETT
T ss_pred             EccCCccCCEEEEEEEcccc
Confidence            99999999999999999953

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.12  E-value=2e-10  Score=109.58  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEe-CCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLL-NGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~-~g~~l~~~~~~~  308 (610)
                      .+.+.|.|.+.+.........+.......+|.+...+ ...+.+|+.++|.|.+ .|.|.|.+.|++ ++..+.......
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           82 TDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             GGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred             ccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence            4678899987653222222222222222235555444 3467789999999999 899999999999 454443322111


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  359 (610)
                       .....++   ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.+.
T Consensus       161 -~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          161 -QMANERG---LFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             -EEECTTS---CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             -EEcCCCC---eEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence             1111111   1235899999999999999999999999999999999543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.12  E-value=2.8e-10  Score=119.15  Aligned_cols=166  Identities=16%  Similarity=0.261  Sum_probs=137.0

Q ss_pred             cEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         37 KSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      ..+...+ +++.|+..-  ..+|+.+.|.+ .++.|...+|.  ++.+|+.++|.+|+++.+...+|. ..+|+.+.|.+
T Consensus       138 ~~i~l~~-~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~  212 (401)
T 4fdw_A          138 AKVVLNE-GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV  212 (401)
T ss_dssp             SEEECCT-TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred             cEEEeCC-CccEECHHhcCCCCceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence            3455433 366666432  23788999875 78889989998  789999999999999999999998 58899999984


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc----
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK----  190 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----  190 (610)
                       .+..+...+|.++.+|+.|.|..| ++.+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.+++.+|.+.    
T Consensus       213 -~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          213 -TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             -TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             -chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence             488999999999999999999875 78888888988 78999999 56788888889999999999999888765    


Q ss_pred             -ccCcccccCCCcccEEecCCC
Q psy10487        191 -HLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       191 -~~~~~~~~~~~~L~~l~l~~N  211 (610)
                       .+....|..+.+|+.+.+..+
T Consensus       289 ~~I~~~aF~~c~~L~~l~l~~~  310 (401)
T 4fdw_A          289 AMIHPYCLEGCPKLARFEIPES  310 (401)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT
T ss_pred             cEECHHHhhCCccCCeEEeCCc
Confidence             678888999999999988743

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.12  E-value=8.4e-12  Score=117.67  Aligned_cols=125  Identities=16%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             CCCCCCCCCCCCccCCCc-ccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+..+... ...+.. .+..+|.+........+.+|+.++|.|.+ .|.|.|.+.|++++..+.......
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  156 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKL-IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST  156 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEEC-CEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSS
T ss_pred             HHCcEEEEEEecCCCCccceEEEEE-EEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccc
Confidence            467789998766533111 111111 22345655555555678899999999997 899999999999998877654321


Q ss_pred             eeeccCCcee-eeeeEEEEEecCCCCCeEEEEEeecCCccee--EEEEEEc
Q psy10487        309 LEEEEGDALF-EKSVSITLFNVTDLDAGEYTCYAENIRGNAS--GEISLDL  356 (610)
Q Consensus       309 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~L~V  356 (610)
                      .......... ...+.|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|
T Consensus       157 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             SSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             eeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            1111110000 1235899999999999999999999999984  4444444

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.12  E-value=6.7e-10  Score=107.20  Aligned_cols=182  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ec-cCCcc-ceeec--cCCceee-----eeeEEEEEec
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LH-NSSFD-LLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~-~~~~~-~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +. ..... .....  .++..+.     ....|+|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            45667889999999999999875  6889999842  21   10 00000 00000  1111111     1348999999


Q ss_pred             CCCCCeEEEEEee--cCCcc----eeEEEEEEcCc-ccccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487        330 TDLDAGEYTCYAE--NIRGN----ASGEISLDLPE-INLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH  401 (610)
Q Consensus       330 ~~~D~G~Y~C~a~--N~~G~----~~~~~~L~V~~-~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (610)
                      +.+|+|.|.|.+.  |..|.    ....+.|.|.. ...+|.+.. .+.....            .+...+...|...+.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~------------~g~~~v~L~C~~~g~  153 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSP------------SDTSSVAVGCLAQDF  153 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------------------CCSEEEEEEEEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccC------------CCCCcEEEEEEEEEE
Confidence            9999999999998  43122    22345777754 122232221 1110000            110011223333322


Q ss_pred             ---c-cccccc-cCCcccccc---------ccccccceeeeeeee--ccCcceeeeecCCCcceeeeeeccccc
Q psy10487        402 ---K-NKRRKR-KGKMKQSVS---------FNDQEKKLLDVSITT--TDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       402 ---~-~~~~~~-~~~~~~~~~---------~~~~~~~L~i~~v~~--~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                         + ...|.+ .+..-....         .......|.|.....  +|.|.|+|.|.|..|.......+.+.+
T Consensus       154 ~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          154 LPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             BSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             eCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence               2 223333 111100000         001123577777776  789999999999999877766665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=2.5e-12  Score=133.42  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             cCCCccEEEeecCCCCCCChhhhccc---CCCCccEEEcccCCCcccchhhh-cCCCCCcEEEccCCCCCCCCcccc---
Q psy10487         53 LDSDIQVLDLNNNKISYLTKEAFKSI---GLLNLQRIYLKNSGIREVHRDTF-KYLTILVEVDLSDNQIAWLHQDTF---  125 (610)
Q Consensus        53 l~~~L~~L~L~~n~i~~l~~~~~~~~---~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~LdLs~n~l~~l~~~~f---  125 (610)
                      +...++.|+|++|.|+......+..+   ...+|+.|+|++|.|.......+ ..+.+|++|+|++|+|.......+   
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            34578999999999887655554421   23689999999999876443333 345688999999999876554444   


Q ss_pred             --cCCCCCcEEEeeCccccccCcC----cCCCCCCccEEEccCccccccC----HHHhhcCccccccccccccccccCc-
Q psy10487        126 --LGNDRLKVLYLNGNPITELRAG----QFPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRLKHLSE-  194 (610)
Q Consensus       126 --~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~-  194 (610)
                        ....+|+.|+|++|.++.....    .+..+++|+.|+|++|.|....    ...+....+|+.|+|++|.|+.... 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              3467899999999998764322    2356788999999999987654    3345667789999999998876433 


Q ss_pred             ---ccccCCCcccEEecCCCccc
Q psy10487        195 ---SVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       195 ---~~~~~~~~L~~l~l~~N~~~  214 (610)
                         ..+...+.|+.|++++|.+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence               23345678999999999864

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.11  E-value=1.2e-10  Score=100.67  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCcee----eeeeEEEEEecCCCCCeEEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      ...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+...... .....+....    ...++|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   83 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEY-PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC   83 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTE-ECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEecc-ccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEE
Confidence            34567788999999999999999999999999865533210000 0000011011    114689999999999999999


Q ss_pred             EeecCCcceeEEEEEEcCcc
Q psy10487        340 YAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~~~  359 (610)
                      .|.|. |.....+.|.|...
T Consensus        84 ~a~n~-g~~~~~~~l~V~~~  102 (124)
T 3rbg_A           84 LHYSD-SVSTKEVKVIVLAT  102 (124)
T ss_dssp             EEESS-SEEEEEEEEEEECC
T ss_pred             EEEcC-CCCcEEEEEEEEeC
Confidence            99999 99999999988543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=103.88  Aligned_cols=97  Identities=21%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceee----eeeEEEEEecCCCCCeEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE----KSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +...+..+.+.+|++++|.|.+.+.|.+.+.|++.+......... .....++....    ....|.|.+++.+|+|.|+
T Consensus        41 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~  119 (145)
T 1z9m_A           41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEK-RALRDNRIQLVTSTPHELSISISNVALADEGEYT  119 (145)
T ss_dssp             TCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTE-ECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred             eecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCc-eecccCCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence            345667889999999999999999999999999533211100000 00001110111    1468999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcCcccc
Q psy10487        339 CYAENIRGNASGEISLDLPEINL  361 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~~~~~  361 (610)
                      |.|.|. |.....+.|.|...+.
T Consensus       120 C~~~n~-~~~~~~~~L~V~~~P~  141 (145)
T 1z9m_A          120 CSIFTM-PVRTAKSLVTVLGIPQ  141 (145)
T ss_dssp             EEECSS-SCEEEEEEEEEECCCC
T ss_pred             EEEEcC-CCceEEEEEEEEeCCC
Confidence            999999 9888999999855433

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.10  E-value=4.7e-11  Score=112.63  Aligned_cols=116  Identities=19%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL  308 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~  308 (610)
                      .+.+.|+|.+.+...+.....+......  ..|.+......  +.+|+.+.|.|.+.|.| |.+.|++++..+.......
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~  157 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT  157 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEE
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeE
Confidence            4678899988765433322222222221  22444444333  88999999999999976 8999999999887554322


Q ss_pred             eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEcC
Q psy10487        309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDLP  357 (610)
Q Consensus       309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~  357 (610)
                      ....        .+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       158 ~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          158 LSQN--------NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             EETT--------TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             EcCC--------CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            1111        14899999999999999999999999864 47788774

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.10  E-value=1.8e-10  Score=96.66  Aligned_cols=88  Identities=18%  Similarity=0.361  Sum_probs=67.6

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ..+|.+...+..+.+.+|++++|.|.+.|.  |.+.|++++..+....+..... ++     ....|.|.+++.+|+|.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y   77 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQ-DG-----TRCELQIHDLSVADAGEY   77 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEE-ET-----TEEEEEESSCCTTTCSEE
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEe-cC-----CEEEEEECCCCcccCEEE
Confidence            357888888888999999999999999775  7899999998876544322221 11     123699999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcC
Q psy10487        338 TCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|.|    ....+.|.|.
T Consensus        78 ~C~a~n----~~~~~~l~V~   93 (108)
T 2dm7_A           78 SCMCGQ----ERTSATLTVR   93 (108)
T ss_dssp             EEEETT----EEEEEECEEE
T ss_pred             EEEEcC----CEEEEEEEEe
Confidence            999955    5667777774

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.10  E-value=6.1e-11  Score=110.55  Aligned_cols=119  Identities=17%  Similarity=0.306  Sum_probs=83.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceee---eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI---KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~---~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|+|.+.+..+... ..+... +..+|.+..   .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......
T Consensus        73 ~d~G~Y~C~~~n~~~~~~-~~~~l~-v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~  150 (197)
T 3lcy_A           73 EDEGVYTCIATNEVGEVE-TSSKLL-LQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI  150 (197)
T ss_dssp             GGCEEEEEEEECSSCEEE-EEEEEE-EEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE
T ss_pred             cCCEEEEEEEECCCCcee-EEEEEE-EEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCce
Confidence            367789998865543221 111111 112333321   124556788999999999999999999999999988765432


Q ss_pred             ceeeccCCceeeeeeEEEEEecCC-CCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTD-LDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      ......      ..+.|.|.+++. +|+|.|+|.|.|..|.....+.|.|.
T Consensus       151 ~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          151 TIENTE------HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             EEEECS------SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEcC------CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            222111      125899999995 89999999999999999999998884

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.10  E-value=7.7e-11  Score=113.95  Aligned_cols=129  Identities=22%  Similarity=0.325  Sum_probs=85.6

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc---CCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEe----CCEEec
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLL----NGQVLH  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~----~g~~l~  302 (610)
                      .+.+.|+|.+.+..+... ..+......   .+|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++    ++..+.
T Consensus        82 ~d~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~  160 (241)
T 3grw_A           82 SDRGNYTCVVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  160 (241)
T ss_dssp             GGCEEEEEEEEETTEEEE-EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSC
T ss_pred             ccCEEEEEEEeecCCceE-EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccC
Confidence            356789998866443221 112221111   1233332 3467778899999999999999999999999    777765


Q ss_pred             cCCccceeecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccc
Q psy10487        303 NSSFDLLEEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEIN  360 (610)
Q Consensus       303 ~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~  360 (610)
                      ...........  ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             TTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             CCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence            54432211100  00011345689999999999999999999999999999999996543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.10  E-value=3.2e-11  Score=115.55  Aligned_cols=132  Identities=23%  Similarity=0.359  Sum_probs=87.0

Q ss_pred             CCCCCCCCCCCCccCCCccccccccccc---CCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEe----CCEEec
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLL----NGQVLH  302 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~----~g~~l~  302 (610)
                      .+.+.|+|.+.+..+... ..+......   .+|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++    +|..+.
T Consensus        86 ~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~  164 (231)
T 3ojm_B           86 SDKGNYTCVVENEYGSIN-HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG  164 (231)
T ss_dssp             GGCEEEEEEEEETTEEEE-EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred             ccCEEEEEEEecccCccc-ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence            367789998866543321 111111111   1233322 3467788999999999999999999999999    777765


Q ss_pred             cCCcccee-eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccc
Q psy10487        303 NSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT  363 (610)
Q Consensus       303 ~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p  363 (610)
                      ........ ...........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...+.+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             TTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             CCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            44332111 11110011223579999999999999999999999999999999996554443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.10  E-value=5.7e-11  Score=112.38  Aligned_cols=115  Identities=13%  Similarity=0.112  Sum_probs=77.8

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+....   ..+.... ..+|.+...+ ...+.+|+.++|.|.+.+. |.+.+.|+++|..+...     
T Consensus        64 ~D~G~Y~C~a~n~~~s---~~~~l~V-~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----  133 (204)
T 3sgj_C           64 DDSGEYRCQTQLSTLS---DPVQLEV-HIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----  133 (204)
T ss_dssp             GGCEEEEEEETTSBCC---CCEEEEE-ECSSEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----
T ss_pred             cCCEEEEEEeCCCccc---ccEEEEE-ecCceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----
Confidence            4678899988653221   1222211 2344444433 3678899999999999766 66899999999876432     


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC-CcceeEEEEEEcCccccccc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI-RGNASGEISLDLPEINLATT  364 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~G~~~~~~~L~V~~~~~~p~  364 (610)
                               ...+.|.|.+++.+|+|.|+|.|.|. .+..+..+.|.|.+....|.
T Consensus       134 ---------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          134 ---------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             ---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred             ---------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence                     12348999999999999999999994 45567788888865544433

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.10  E-value=5.1e-11  Score=110.31  Aligned_cols=103  Identities=12%  Similarity=0.083  Sum_probs=78.4

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~  310 (610)
                      .+.+.|.|.+.+..+...   +...      .+. .+....+.+|+.++|.|.+.|.|.|.+.|++++..+.        
T Consensus        78 ~D~G~Y~C~~~~~~~~~~---l~V~------~~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------  139 (184)
T 2ny1_B           78 EDSDTYICEVEDQKEEVQ---LLVF------GLT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------  139 (184)
T ss_dssp             GGCEEEEEEETTEEEEEE---EEEE------EEE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE--------
T ss_pred             HHCEEEEEEEEcCCCcEE---EEEE------Eec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc--------
Confidence            467889998876543211   1111      111 2344577899999999999999999999999876542        


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  359 (610)
                              ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus       140 --------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          140 --------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             --------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             --------cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence                    12348999999999999999999999999999999988543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.09  E-value=3.9e-10  Score=107.42  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe---c-cCCccce-eec--cCCceee-----eeeEEEEEec
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL---H-NSSFDLL-EEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l---~-~~~~~~~-~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .+..+.+.+|++++|.|.+.+.|  .+.+.|+++.  ...   . ....... ...  .++....     ....|+|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35677889999999999999875  5889999852  211   0 0000000 000  0111111     1348999999


Q ss_pred             CCCCCeEEEEEeecCCcc---eeEEEEEEcC
Q psy10487        330 TDLDAGEYTCYAENIRGN---ASGEISLDLP  357 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~  357 (610)
                      +.+|+|.|.|.+.|..|.   ....+.|.|.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~  116 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVS  116 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEEC
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEec
Confidence            999999999999997532   2234677775

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.08  E-value=1.2e-10  Score=110.45  Aligned_cols=125  Identities=15%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             CCCCCCCCCCCCccCCCccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccC-C
Q psy10487        231 LYSHPLSCTEPGMLQTKHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNS-S  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~-~  305 (610)
                      .+.+.|.|.+.+........  .+.......+|.+...+....+.+|+.++|.|.+.| .|.| .+.|+++|..+... .
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            36788999987654321111  122222223677776554444557999999999998 6666 89999999988765 2


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD  355 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  355 (610)
                      .........++.+...+.|.|.+++.+|+|.|+|.|.|..........+.
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  210 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN  210 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEEE
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEec
Confidence            21122222333445567999999999999999999999887754444443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.08  E-value=4.4e-11  Score=112.14  Aligned_cols=110  Identities=14%  Similarity=0.056  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCCCccCCCc-cccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|+|.+.+..+... ...+......  -+|.+...+ ...+.+|++++|.|.+.|.| |.+.|+|+|..+......
T Consensus        68 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~  145 (196)
T 2d3v_A           68 HHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD  145 (196)
T ss_dssp             GGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEE
T ss_pred             hHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccc
Confidence            467889999865432111 1112222111  245555443 35788999999999999999 999999999876532211


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ......+    ...+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       146 ~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          146 SQLTPSG----QFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             CEECTTS----CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccccCC----CceeEEEeeecCcccCeeEEEEEEccCC
Confidence            1111111    1236899999999999999999999876

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.06  E-value=1.5e-10  Score=108.53  Aligned_cols=120  Identities=16%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             CCCCCCCCCCCCcc-CC-Cccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc
Q psy10487        231 LYSHPLSCTEPGML-QT-KHWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF  306 (610)
Q Consensus       231 l~~~~~~C~a~~~l-~g-~~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~  306 (610)
                      .+.+.|+|.+.+.. +. .....+......  -+|.+...+ ...+.+|++++|.|.+.|. .|.+.|+|+|..+.....
T Consensus        68 ~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~  145 (198)
T 1ugn_A           68 EHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL  145 (198)
T ss_dssp             GGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE
T ss_pred             HHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc
Confidence            46788999986654 21 111122222111  235554443 4678899999999999998 789999999987643322


Q ss_pred             cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-----eeEEEEEEc
Q psy10487        307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-----ASGEISLDL  356 (610)
Q Consensus       307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V  356 (610)
                      .......+    ...+.|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|
T Consensus       146 ~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          146 NSQPHARG----SSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV  196 (198)
T ss_dssp             EC----------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             cccccCCC----cceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence            11111111    12368999999999999999999998762     245666665

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.06  E-value=1.2e-10  Score=113.12  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCCCCCCCCCCCccCCCcc----ccccccccc--CCCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQTKHW----DDVKAQEFA--CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~----~~v~~~~~~--c~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~  303 (610)
                      .+.+.|.|.+.+......+    ..+......  -+|.+... +..+.+.+|+.++|.|.+.|.|.|.|.|++++..+..
T Consensus       100 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~  179 (250)
T 2fbo_J          100 QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFEN  179 (250)
T ss_dssp             GGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSC
T ss_pred             hhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccc
Confidence            4678899998765543221    122222222  13444443 3567778899999999999999999999999887754


Q ss_pred             CCccc--ee-----------ecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCc---ceeEEEEEEc
Q psy10487        304 SSFDL--LE-----------EEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRG---NASGEISLDL  356 (610)
Q Consensus       304 ~~~~~--~~-----------~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~L~V  356 (610)
                      .....  ..           ...  ........+.|.|.+++.+|+|.|+|.|.|.+|   ....++.|.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V  250 (250)
T 2fbo_J          180 YETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV  250 (250)
T ss_dssp             SSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred             cccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence            22110  00           000  000001225899999999999999999999555   5555666554

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.06  E-value=2e-10  Score=124.72  Aligned_cols=90  Identities=17%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+... +....+.+|+.++|.|.+.|.++  ..|+|+++|..+...........+.++.+...+.|.|..+..+|.|.
T Consensus       296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~  375 (512)
T 1zvo_C          296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS  375 (512)
T ss_pred             CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence            3555443 33344668999999999998644  38999999988652211112222334455667889999999999999


Q ss_pred             EEEEeecCCccee
Q psy10487        337 YTCYAENIRGNAS  349 (610)
Q Consensus       337 Y~C~a~N~~G~~~  349 (610)
                      |+|.|.|..+...
T Consensus       376 y~C~a~n~~~~~~  388 (512)
T 1zvo_C          376 VTCTLNHPSLPPQ  388 (512)
T ss_pred             EEEEEEeCCCCCC
Confidence            9999999988653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.06  E-value=9.4e-11  Score=111.17  Aligned_cols=122  Identities=12%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCCCccCC--Ccccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQT--KHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g--~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~  303 (610)
                      .+.+.|.|.+.+..+.  .....+.....   ..+|.+...+....+.+|+.++|.|.+.|. |+ +.|.|+++|..+..
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            4678899988765441  11111111111   156777776666666689999999999986 44 39999999998865


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      ......... .++.+...+.|+|.++..+|+|.|+|.|.|..|....++.
T Consensus       160 ~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          160 GVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             TEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             CcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            432211111 2234455678999999999999999999999987776654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.05  E-value=4.8e-10  Score=106.83  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=75.6

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC-CEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+  .+.....+..... .+|..........+.+|+.++|.|.+.|.|.|.+.|+++ +..+....... 
T Consensus        90 ~D~G~Y~C~~~~--~~~~~~~~~l~V~-~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~-  165 (222)
T 3sbw_C           90 QDAGVYRCMISY--GGADYKRITVKVN-APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT-  165 (222)
T ss_dssp             GGCEEEEEEEES--SSEEEEEEEEEEE-BCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE-
T ss_pred             ccCeEEEEEEEe--CCCceeEEEEEEE-CCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE-
Confidence            367889998876  2322222222222 233222222223567899999999999999999999998 55554332111 


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      .....++.+...+.|   .++.+|.|.|+|.|.|..|....++.|.|.+
T Consensus       166 ~~~~~~~~~~~~~~l---~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          166 NSKREEKLFNVTSTL---RINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             ECC----CEEEEEEE---EEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             EEcCCCCCEEEEEEE---EEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            111122122222333   4457899999999999999999999999853

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.05  E-value=1.8e-10  Score=105.83  Aligned_cols=109  Identities=16%  Similarity=0.240  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+.....   .+.....  .+.+........+.+|+.++|.|.+. +.|.|.+.|+++|..+....    
T Consensus        61 ~d~G~Y~C~~~~~~~s~---~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----  131 (176)
T 1f2q_A           61 EDSGEYKCQHQQVNESE---PVYLEVF--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----  131 (176)
T ss_dssp             GGCEEEEEECTTSSCCC---CEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----
T ss_pred             ecCEEEEEEcCCccccc---cEEEEEe--CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----
Confidence            46788999987643221   1222221  34444445556788999999999994 67778999999998874321    


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLPE  358 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  358 (610)
                                ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       132 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          132 ----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             ----------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ----------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence                      1248999999999999999999997554 55668888743

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.05  E-value=1.6e-10  Score=110.79  Aligned_cols=120  Identities=14%  Similarity=0.101  Sum_probs=75.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|.|.+.+..+... ..+   .+..++.+........+.+|+.+.|.|.+.| .|.|+|+|++++..+........
T Consensus        93 ~D~G~Y~C~a~n~~~~~~-~~v---~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYEK-ALV---ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGCEEEEEEEEETTEEEE-EEE---EEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             HHCeeEEEEEECCCcEEE-EEE---EEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            467889998876443221 111   1112333334445667788999999999998 59999999996554433222222


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      ... .++.+   ..+.+..++.+|+|.|+|+|.|..|...+++.|.|.+
T Consensus       169 ~~~-~~g~~---~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          169 VAD-GVGLY---AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             EEC-TTSCE---EEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             EEC-CCCcE---EEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            221 21111   2344556788999999999999999999999998865

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.04  E-value=7.6e-11  Score=114.48  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             eecceEeecCceEEEEEEEEecCC----CeEEEEeC--CEE---ec-cC------Cccceeec---cCCcee-----eee
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE----PTILWLLN--GQV---LH-NS------SFDLLEEE---EGDALF-----EKS  321 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~----p~v~W~~~--g~~---l~-~~------~~~~~~~~---~~~~~~-----~~~  321 (610)
                      .+..+.+.+|++++|.|.+.+.+.    ..+.|++.  +..   +. ..      ........   .++...     ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            456778999999999999998764    48999983  211   10 00      00000000   011111     112


Q ss_pred             eEEEEEecCCCCCeEEEEEeecCC
Q psy10487        322 VSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       322 ~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ..|.|.+++.+|+|.|.|.+.+..
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~  109 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGE  109 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCc
Confidence            469999999999999999998764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.04  E-value=2.4e-10  Score=104.93  Aligned_cols=108  Identities=14%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+....   ..+.....  .+.....+....+.+|+.++|.|.+.|.|++ .+.|+++|..+...     
T Consensus        64 ~d~G~Y~C~~~n~~~s---~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----  133 (175)
T 1fnl_A           64 NDSGEYRCQTNLSTLS---DPVQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----  133 (175)
T ss_dssp             GGCEEEEEECSSSCCC---CCEEEEEE--CSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----
T ss_pred             ccCEEEEEEeeCCccc---ccEEEEEe--CCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----
Confidence            3678899998763321   12222222  2223334455678899999999999988765 99999999887432     


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP  357 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~  357 (610)
                               ...+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       134 ---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          134 ---------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             ---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ---------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence                     12358999999999999999999997764 5567777773

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.03  E-value=8.7e-11  Score=108.32  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCccCCC-ccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTK-HWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~-~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|.|.+.+..+.. ....+......  -.|.+.        ..+..++|.|.+.|.|.|.|.|+++|..+....  
T Consensus        71 ~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~--  140 (176)
T 1hng_A           71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLR--  140 (176)
T ss_dssp             GGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEES--
T ss_pred             ccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCC--
Confidence            47788999987655432 11112221111  112222        235569999999999999999999998876543  


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                                     .+.|.+++.+|+|.|+|.|.|.+|..++.+.|.++
T Consensus       141 ---------------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          141 ---------------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             ---------------SSEEEEECSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred             ---------------cEEEEEEEccCCeEEEEEEEecCCCceecccccCC
Confidence                           24566888999999999999999999988877663

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.02  E-value=8.3e-11  Score=113.49  Aligned_cols=179  Identities=9%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeE--EEEeCC--EE---ec----cCC--c-cceeeccCCceee-----eeeEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTI--LWLLNG--QV---LH----NSS--F-DLLEEEEGDALFE-----KSVSI  324 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v--~W~~~g--~~---l~----~~~--~-~~~~~~~~~~~~~-----~~~~L  324 (610)
                      .+..+.+.+|++++|.|.+.+.+  .+.+  .|++..  ..   +.    ...  . .......++....     ....|
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (232)
T 3qhz_H            6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL   85 (232)
T ss_dssp             EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred             cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence            34557789999999999998743  2445  999832  11   10    000  0 0000000111111     12479


Q ss_pred             EEEecCCCCCeEEEEEeecCC--------cceeEEEEEEcCc-cccccccc-cCCcceeehhhhHHHHHHHHHhheeEEE
Q psy10487        325 TLFNVTDLDAGEYTCYAENIR--------GNASGEISLDLPE-INLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFC  394 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N~~--------G~~~~~~~L~V~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (610)
                      .|.+++.+|+|.|.|.+.|..        ......+.|.|.. ....|.+. ..+......            +. .+..
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~------------g~-~v~L  152 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTS------------GG-TAAL  152 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------------------C-EEEE
T ss_pred             EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccC------------CC-cEEE
Confidence            999999999999999999874        2223345566642 22333332 111111011            11 1133


Q ss_pred             EEEeeec-c-c--ccccccCCccccc---cccccc------cceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        395 VCRAHEH-K-N--KRRKRKGKMKQSV---SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       395 ~~~~~~~-~-~--~~~~~~~~~~~~~---~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .|...+. + .  ..|.+.+......   .....+      ..|.+......| |.|+|.|.|..+.......+.+.
T Consensus       153 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          153 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            4443332 2 1  1243322110000   011111      246666666678 99999999999887777666554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.01  E-value=3.8e-10  Score=106.79  Aligned_cols=119  Identities=13%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             CCCCCCCCCCCCccCCCccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccC-C
Q psy10487        231 LYSHPLSCTEPGMLQTKHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNS-S  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~-~  305 (610)
                      .+.+.|.|.+.+........  .+.......+|.+...+....+.+|+.++|.|.+.|. |.| .|.|+++|..+... .
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L           80 DDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred             HHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence            36788999887654321111  1222222235777765544444589999999999984 554 89999999988655 1


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      .........++.+...+.|.|.++..+|+|.|+|.|.|......
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP  203 (210)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence            11112222333445667999999999999999999999876543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.01  E-value=1.4e-10  Score=115.47  Aligned_cols=211  Identities=15%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             CCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCC--eEEEEeCCEEeccCCcccee
Q psy10487        234 HPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP--TILWLLNGQVLHNSSFDLLE  310 (610)
Q Consensus       234 ~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p--~v~W~~~g~~l~~~~~~~~~  310 (610)
                      +.|.|.+... +......+....+.-|-.+.+.+....+.+|+.++|.|.+.|. |..  +|+|+|++..+......   
T Consensus        61 ~~y~C~~~~~-~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---  136 (291)
T 1mq8_A           61 SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---  136 (291)
T ss_dssp             CCCEEEEECS-SCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---
T ss_pred             CeEEEEEEcC-CccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---
Confidence            3588886421 1222233344444334344444444568899999999999875 443  58999999887643310   


Q ss_pred             eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc--------eeEEEEEEcCccccc-cccccCCcceeehhhhHHH
Q psy10487        311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN--------ASGEISLDLPEINLA-TTLSKTDSWYMLVLGISVC  381 (610)
Q Consensus       311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--------~~~~~~L~V~~~~~~-p~~~~~~~~~~~~~~~~~~  381 (610)
                        ..    .....|.+.....+|.+.|+|+|.|..+.        .+....|.|...+.. +.+. .+.  .+..+....
T Consensus       137 --~~----~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~-~p~--~l~eG~~v~  207 (291)
T 1mq8_A          137 --GE----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV-SPR--VLEVDTQGT  207 (291)
T ss_dssp             --BT----TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------
T ss_pred             --CC----CceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceec-CCc--CccCCCeEE
Confidence              11    12346666666666667999999998663        244566666433221 1221 121  334445555


Q ss_pred             HHHHHHhheeE--EEEEEeeecccccccccCCccccccccccccceeeeee---eecc--CcceeeeecCCCcceeeeee
Q psy10487        382 VVSVIVSIGMS--FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSI---TTTD--RHTGSCEALGSQPDMELIEQ  454 (610)
Q Consensus       382 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~D--~G~Y~C~A~N~~G~~~~~~~  454 (610)
                      +.|.+-+.+..  ..++|.++......        ..  ...+..+.+...   ..+|  .+.|+|.|.|.....+....
T Consensus       208 l~C~~~g~~P~~~~~v~w~~~g~~l~~--------~~--~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~  277 (291)
T 1mq8_A          208 VVCSLDGLFPVSEAQVHLALGDQRLNP--------TV--TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT  277 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCCCCCCcccEEEEEECCEecCc--------ee--eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEE
Confidence            56665554322  12333322221110        00  011122333222   3434  66777999887666788888


Q ss_pred             cccccCCCcceeE
Q psy10487        455 SLAMEQPPVHITI  467 (610)
Q Consensus       455 l~v~~~pp~~i~i  467 (610)
                      |.|++.|+-.+++
T Consensus       278 l~v~~~~~~~~~~  290 (291)
T 1mq8_A          278 VTIYSFPAPNVIL  290 (291)
T ss_dssp             -------------
T ss_pred             EEEEcCCCccEEe
Confidence            8888766555443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.00  E-value=2.7e-10  Score=106.66  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCCccC-CCccccccccc--ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQ-TKHWDDVKAQE--FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~-g~~~~~v~~~~--~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|+|.+.+..+ ......+....  ..-+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+......
T Consensus        68 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~  145 (196)
T 3p2t_A           68 DYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLR  145 (196)
T ss_dssp             GGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEE
T ss_pred             ccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeec
Confidence            467889999876554 12222222222  1234666655543 67899999999999984 5689999999876543221


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc-----ceeEEEEEEc
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-----NASGEISLDL  356 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V  356 (610)
                      ....     .....+.|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|
T Consensus       146 ~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          146 SEHG-----AQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             EEEE-----EEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             cccc-----ccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            1100     012346899999999999999999999987     2344566665

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.00  E-value=4.1e-10  Score=106.64  Aligned_cols=122  Identities=11%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             CCCCCCCCCCCCccCCCccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCC
Q psy10487        231 LYSHPLSCTEPGMLQTKHWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSS  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~  305 (610)
                      .+.+.|.|.+.+........  .+... ....+|.+...+....+.+|+.++|.|.+.|.+++  .|.|+++|..+....
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  162 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM  162 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence            36788999886644211101  11111 11246777765544445578999999999986544  899999999886553


Q ss_pred             ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487        306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI  352 (610)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  352 (610)
                      .........++.+...+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            22222223333445567899999999999999999999887655444

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.99  E-value=6.6e-11  Score=114.92  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=58.0

Q ss_pred             CCCceeeee-cceE-eecCceEEEEEEEEecC----CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCC
Q psy10487        259 CPPNVTIKE-SMVI-REAGGNVTMSCYVYGDP----EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       259 c~P~i~~~~-~~~~-v~~G~~v~l~C~~~g~P----~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      ++|.+.+.+ .... +..|+.++|.|.+.|.+    ..+|+|+++|..+....... .....++.+...+.|.|.....+
T Consensus        21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~   99 (240)
T 4acp_A           21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-REEQYNSTYRVVSVLTVLHQDWL   99 (240)
T ss_dssp             --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC-CEEC---CEEEEEEEECCHHHHH
T ss_pred             CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc-ceECCCCeEEEEEEEEEechhcc
Confidence            456665544 4444 55699999999999974    23799999999886532111 11122334556678999888888


Q ss_pred             CCeEEEEEeecCCcce
Q psy10487        333 DAGEYTCYAENIRGNA  348 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~  348 (610)
                      |.|.|+|+|.|..+..
T Consensus       100 d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A          100 NGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HTCCEEEEEECC----
T ss_pred             CCCEEEEEEEcCCCCc
Confidence            8999999999998753

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.99  E-value=3.5e-10  Score=105.16  Aligned_cols=61  Identities=23%  Similarity=0.429  Sum_probs=52.7

Q ss_pred             eecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       272 v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      +.+|++++|.|.+   |.|.|.|+|+|..+.....             ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            4489999999998   8999999999998864331             22489999999999999999999999976

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.99  E-value=6.2e-10  Score=105.84  Aligned_cols=125  Identities=13%  Similarity=0.168  Sum_probs=81.1

Q ss_pred             CCCCCCCCCCCCccCCCc---ccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccC-
Q psy10487        231 LYSHPLSCTEPGMLQTKH---WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNS-  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~---~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~-  304 (610)
                      .+.+.|.|.+.+......   ...+.......+|.+...+....+.+|+.++|.|.+.| .|.| .|.|+++|..+... 
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  161 (216)
T 2xzc_L           82 GDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS  161 (216)
T ss_dssp             GGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSE
T ss_pred             ccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCe
Confidence            367889998876543000   11122222224677766444333446889999999998 4555 89999999988654 


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD  355 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  355 (610)
                      ..........++.+...+.|.|..+..+|+|.|+|.|.|..........+.
T Consensus       162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i~  212 (216)
T 2xzc_L          162 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN  212 (216)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred             eEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEecc
Confidence            111112222333445567899999999999999999999886655444443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.99  E-value=2.7e-09  Score=101.02  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--E---EeccCCccceeeccCCcee------eeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--Q---VLHNSSFDLLEEEEGDALF------EKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~---~l~~~~~~~~~~~~~~~~~------~~~~~L~I~~v~~  331 (610)
                      +...+..+.+.+|++++|.|.+.+.+ +.+.|+|..  .   .+.....  .....++...      .....|+|.+++.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~--~~~~~~R~~~~~~~~~~~~~~L~I~~v~~   80 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLAS--GTKENGRLKSAFDSKERRYSTLHIRDAQL   80 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESS--EEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEcc--CCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence            34456778899999999999998754 589999842  1   1110000  0000111111      1235899999999


Q ss_pred             CCCeEEEEEeecCC
Q psy10487        332 LDAGEYTCYAENIR  345 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~  345 (610)
                      +|+|.|.|.+.+..
T Consensus        81 ~D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           81 EDSGTYFCAADTWH   94 (207)
T ss_dssp             GGCEEEEEEEECBC
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999999874

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.98  E-value=6.7e-10  Score=120.53  Aligned_cols=76  Identities=21%  Similarity=0.427  Sum_probs=51.9

Q ss_pred             cCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        274 AGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      .|+.++|.|.+.|. |.| .|+|++++...........  ...++.+...+.|.|..+... .|.|+|.|.|..|.....
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~  225 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEI--QRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE  225 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCce--ecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence            46899999999987 776 8999997543211111011  111223345568999888777 999999999999876554


Q ss_pred             E
Q psy10487        352 I  352 (610)
Q Consensus       352 ~  352 (610)
                      +
T Consensus       226 ~  226 (512)
T 1zvo_C          226 I  226 (512)
T ss_pred             E
Confidence            4

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.98  E-value=1.3e-09  Score=119.47  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=80.2

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      ..|.+...+....+.+|+++.|.|.+.|.|.|+|+|++++.++..+.+.....+++      ...|.|.++..+|+|.|+
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~------~~~L~I~~~~~~D~G~Yt  554 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN------DYGLTINRVKGDDKGEYT  554 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEE
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCC------EEEEEEcCCCcccCcEEE
Confidence            35777777888899999999999999999999999999999998776654444333      238999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|..|..++.+.|+|
T Consensus       555 ~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          555 VRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEEEE
Confidence            999999999999999988

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.97  E-value=2.1e-10  Score=108.63  Aligned_cols=123  Identities=10%  Similarity=0.076  Sum_probs=83.2

Q ss_pred             CCCCCCCCCCCCccCC-Cccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEecC--CCeEEEEeCCEEeccC
Q psy10487        231 LYSHPLSCTEPGMLQT-KHWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNGQVLHNS  304 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g-~~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g~~l~~~  304 (610)
                      .+.+.|.|.+.+.... ....  .+... ....+|.+...+....+.+|+.++|.|.+.|.+  .+.+.|+++|..+...
T Consensus        78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  157 (211)
T 3tv3_L           78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG  157 (211)
T ss_dssp             GGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             hHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCC
Confidence            3678899988665431 1111  11111 112467777766555556899999999999863  5789999999988653


Q ss_pred             CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      ..........++.+...+.|.|..+..+|+|.|+|.|.|..|....++.
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          158 VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             EEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             cccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            2222222223334455678999999999999999999999987766653

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.97  E-value=8.9e-11  Score=111.32  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             CCCCCCCCCCCCccCCC-cc---cccccc-cccCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEecc
Q psy10487        231 LYSHPLSCTEPGMLQTK-HW---DDVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHN  303 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~-~~---~~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~  303 (610)
                      .+.+.|.|.+.+...+. ..   ..+... ....+|.+...+....+.+|+.++|.|.+.|. |+ |.|.|+++|..+..
T Consensus        79 ~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  158 (212)
T 1nfd_E           79 EDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND  158 (212)
T ss_dssp             GGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             ccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence            46788999887421111 00   111111 11245766665544445689999999999987 55 79999999998876


Q ss_pred             CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE
Q psy10487        304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG  350 (610)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  350 (610)
                      ..........+++ +...+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus       159 ~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          159 GVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             SCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             CeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            5432222233333 455678999999999999999999999876433

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.97  E-value=5.3e-10  Score=101.77  Aligned_cols=107  Identities=12%  Similarity=0.193  Sum_probs=75.5

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL  309 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~  309 (610)
                      .+.+.|+|.+.+.....   .+.... ..+|. ........+.+|+.+.|.|.+. +.|.+.+.|+++|..+....    
T Consensus        61 ~d~G~Y~C~~~~~~~s~---~~~l~v-~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----  131 (170)
T 3ry4_A           61 NDSGEYTCQTGQTSLSD---PVHLTV-LFEWL-VLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----  131 (170)
T ss_dssp             GGCEEEEEEETTSBCCC---CEEEEE-ECCSE-EEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----
T ss_pred             ccCeEEEEEEeCCCceE---eEEEEE-ECCce-EecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----
Confidence            46778999887533221   122111 12333 3334456778999999999994 56779999999998765322    


Q ss_pred             eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEc
Q psy10487        310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDL  356 (610)
Q Consensus       310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V  356 (610)
                                ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       132 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          132 ----------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             ----------SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ----------CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence                      1237999999999999999999999997 455677765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.97  E-value=4.1e-10  Score=104.41  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             CCCCCCCCCCCCccCC-Cccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQT-KHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g-~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|+|.+.+..+. ....  .+......-+|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+..... 
T Consensus        62 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~-  138 (184)
T 2gi7_A           62 SLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP-  138 (184)
T ss_dssp             GGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC-
T ss_pred             hhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec-
Confidence            4678899998764421 1111  12221112356666655 55778999999999987755 69999999987654211 


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-----eeEEEEEEc
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-----ASGEISLDL  356 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V  356 (610)
                               .....+.|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|
T Consensus       139 ---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          139 ---------ERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             ---------CEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             ---------CCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence                     1133468999999999999999999998653     244555554

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.96  E-value=1.2e-09  Score=106.92  Aligned_cols=83  Identities=16%  Similarity=0.174  Sum_probs=53.3

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---ecc-CCccceeec--cC-CceeeeeeE--EEEEecCCC
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHN-SSFDLLEEE--EG-DALFEKSVS--ITLFNVTDL  332 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~-~~~~~~~~~--~~-~~~~~~~~~--L~I~~v~~~  332 (610)
                      ...+..+.+.+|++++|.|.+.+.+.+.+.|+|.  +..   +.. .........  .+ +......+.  |.|.+++.+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~   84 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence            3456778899999999999999999999999982  211   100 000000000  00 100111111  999999999


Q ss_pred             CCeEEEEEeecCCc
Q psy10487        333 DAGEYTCYAENIRG  346 (610)
Q Consensus       333 D~G~Y~C~a~N~~G  346 (610)
                      |+|.|.|.+.+..+
T Consensus        85 DsG~Y~C~~~~~~~   98 (253)
T 3to4_D           85 QGRTLYCTSSADHW   98 (253)
T ss_dssp             SCEEEEEEEECSCC
T ss_pred             hCeEEEEEEecCCC
Confidence            99999999998754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.96  E-value=1.2e-09  Score=123.88  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=71.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEE-EE--eCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTIL-WL--LNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~-W~--~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+. .+.++.+.+|++++|.|.+.|.|.|.+. |+  ++|..+......  .....    ...+.|.|.+++..|+|.
T Consensus       165 ~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~--~~~~~----~~~~~l~I~~~~~~d~g~  237 (731)
T 2v5y_A          165 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK--VTSSR----RFIASFNVVNTTKRDAGK  237 (731)
T ss_dssp             SCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEE--ECCSS----EEEEEEEECSCCTTTCEE
T ss_pred             ccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceE--Eeccc----cceEEEEEcccccccCeE
Confidence            45555 5668899999999999999999999998 88  677776543211  11111    234799999999999999


Q ss_pred             EEEEeecCCcc-eeEEEEEEcCcc
Q psy10487        337 YTCYAENIRGN-ASGEISLDLPEI  359 (610)
Q Consensus       337 Y~C~a~N~~G~-~~~~~~L~V~~~  359 (610)
                      |+|.|.|..|. .+..+.|.|...
T Consensus       238 Y~c~A~n~~G~~~s~~~~l~V~~~  261 (731)
T 2v5y_A          238 YRCMIRTEGGVGISNYAELVVKEP  261 (731)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECC
T ss_pred             EEEEEECCCCCcceeeEEEEEecC
Confidence            99999999998 777777877543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.96  E-value=4.8e-10  Score=107.47  Aligned_cols=126  Identities=19%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccC--CCceeeeecceEeecCceE-EEEEEE-EecCCCeEEEEeCCEEeccCC-
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFAC--PPNVTIKESMVIREAGGNV-TMSCYV-YGDPEPTILWLLNGQVLHNSS-  305 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c--~P~i~~~~~~~~v~~G~~v-~l~C~~-~g~P~p~v~W~~~g~~l~~~~-  305 (610)
                      .+.+.|.|.+.+...+.....+......-  .|.+...+....+.+|+.+ +|.|.+ .|.|.|.+.|++++..+.... 
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~  166 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVE  166 (231)
T ss_dssp             GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSS
T ss_pred             ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccc
Confidence            46788999976655333323333322222  2555556666777789987 999999 899999999999999887655 


Q ss_pred             ---cccee---eccCCceeeeeeEEEEEecCCCCCeEEEEEeec-----CCcc-eeEEEEEEc
Q psy10487        306 ---FDLLE---EEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN-----IRGN-ASGEISLDL  356 (610)
Q Consensus       306 ---~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-----~~G~-~~~~~~L~V  356 (610)
                         +....   ....++.+...+.|.|.....+|+|.|+|.|.|     ..|. .+..+.|.|
T Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          167 MNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             CCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             cccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence               11111   112223334457899986666679999999999     4555 555666555

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.95  E-value=9.9e-10  Score=103.59  Aligned_cols=123  Identities=20%  Similarity=0.166  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCcc
Q psy10487        231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSFD  307 (610)
Q Consensus       231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~~  307 (610)
                      .+.+.|.|.+.+..+ .....+......-|..+...+. ..+.+|+.++|.|.+.|.++   ++|+|++++..+......
T Consensus        64 ~D~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~  141 (202)
T 1vca_A           64 GNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL  141 (202)
T ss_dssp             GGCSEEEEEEEETTE-EEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred             HHCEEEEEEEEECCc-eEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence            467889999877643 2222333333222333344444 67889999999999998644   479999999887643211


Q ss_pred             ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-------eEEEEEEcC
Q psy10487        308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-------SGEISLDLP  357 (610)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-------~~~~~L~V~  357 (610)
                      ...  ...........|.|..+..+|.|.|+|+|.|..|..       +.++.|.|.
T Consensus       142 ~~~--~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~  196 (202)
T 1vca_A          142 EDA--DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY  196 (202)
T ss_dssp             SCC--SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             ccc--CcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence            100  000012334567888888889999999999998863       456666663

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.95  E-value=6.4e-10  Score=115.71  Aligned_cols=78  Identities=14%  Similarity=0.230  Sum_probs=55.9

Q ss_pred             eecCceEEEEEEEEec-CCC---eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        272 REAGGNVTMSCYVYGD-PEP---TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       272 v~~G~~v~l~C~~~g~-P~p---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      +.+|+.++|.|.+.|. |.|   .|.|++++..+......... ...++.+...+.|.|..++.+|.|.|+|.|.|..+.
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPRE-EQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCC-cccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            7889999999999988 444   69999998665432211111 111223345568999999999999999999999875


Q ss_pred             eeE
Q psy10487        348 ASG  350 (610)
Q Consensus       348 ~~~  350 (610)
                      ...
T Consensus       259 ~~~  261 (376)
T 2aty_A          259 API  261 (376)
T ss_pred             Cce
Confidence            433

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.95  E-value=2.4e-10  Score=111.62  Aligned_cols=80  Identities=16%  Similarity=0.295  Sum_probs=50.9

Q ss_pred             eeecceEeecCceEEEEEEEEe--cCCCeEEEEeC--CEEe--c----cCCccceeec--cCCcee-----eeeeEEEEE
Q psy10487        265 IKESMVIREAGGNVTMSCYVYG--DPEPTILWLLN--GQVL--H----NSSFDLLEEE--EGDALF-----EKSVSITLF  327 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~--g~~l--~----~~~~~~~~~~--~~~~~~-----~~~~~L~I~  327 (610)
                      ..+..+.+.+|++++|.|.+.+  .+.+.+.|++.  +...  .    ..........  .++...     .....|+|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            4567788999999999999986  34578999973  2111  0    0000000000  011111     112469999


Q ss_pred             ecCCCCCeEEEEEeecC
Q psy10487        328 NVTDLDAGEYTCYAENI  344 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~  344 (610)
                      +++.+|+|.|.|.+.+.
T Consensus        84 ~v~~~DsG~Y~C~~~~~  100 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAG  100 (248)
T ss_dssp             SCCGGGCEEEEEEEEEE
T ss_pred             CCCHHHCEEEEEEEeCC
Confidence            99999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	610
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-31
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-24
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-17
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-09
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-09
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	5e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	5e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-05
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	6e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	4e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1de4a1	94	b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, a	0.003
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.004
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.004

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-31
 Identities = 68/281 (24%), Positives = 105/281 (37%), Gaps = 48/281 (17%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-- 81
           CP  C C +   K +  C      A+P  + +  Q + L+ N+IS++   +F++   L  
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 82  ---------------------------------------------NLQRIYLKNSGIREV 96
                                                         L  ++L   G++E+
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 97  HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK 156
               F+ L  L  + L DN +  L  DTF     L  L+L+GN I+ +    F  L  L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 157 TIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD 216
            + L   ++  VH  A   L  L +L L  N L  L      P   L+ L L+ NPW CD
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 217 CHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
           C  R    WL K +  S  + C+ P  L  +    + A + 
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  L L+ N+IS + + AF   GL +L R+ L  + +  VH   F+ L  L+ + L  N 
Sbjct: 155 LTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPIT---ELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
           ++ L  +       L+ L LN NP       R    P   +L+       ++       L
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRAR----PLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 174 --IHLTALESLNLNG 186
               L  L + +L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 55/222 (24%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 28  CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIY 87
           C            C   N TALP  L  D  +L L+ N +   +           L ++ 
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLN 61

Query: 88  LKNSGIREVHRDTFKYLTILVEVDLSDNQIAW-----------------------LHQDT 124
           L               L +L  +DLS NQ+                         L    
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 125 FLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNL 184
             G   L+ LYL GN +  L  G     P L+ + L +  +  +    L  L  L++L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 185 NGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
             N L  + +  FF +  L    L GNPW C+C +  FR WL
Sbjct: 180 QENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.3 bits (246), Expect = 2e-23
 Identities = 54/228 (23%), Positives = 82/228 (35%), Gaps = 14/228 (6%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
           CP  C+C          C D     +P  L  D  +LDL NNKI+ +    FK   L NL
Sbjct: 4   CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNL 57

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             + L N+ I ++    F  L  L  + LS NQ+  L +        L+ L ++ N IT+
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITK 114

Query: 144 LRAGQFPKLPYLKTIELQHCQIHSV--HKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
           +R   F  L  +  +EL    + S      A   +  L  + +    +  + + +    P
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---P 171

Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHW 249
           +L  L LDGN               L     S                
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 33/217 (15%)

Query: 45  NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
               LP  +   +Q L ++ N+I+ + K  F  +  + +  +         +    F+ +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
             L  + ++D  I  + Q        L  L+L+GN IT++ A     L  L  + L    
Sbjct: 150 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 165 IHSVHKDALIH-----------------------LTALESLNLNGNRLKHLSESVFFPT- 200
           I +V   +L +                          ++ + L+ N +  +  + F P  
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 201 -----PNLKTLSLDGNPW-CCDCHLRSFRNWLLKSKL 231
                 +   +SL  NP    +    +FR   +++ +
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 77.2 bits (188), Expect = 7e-17
 Identities = 49/243 (20%), Positives = 77/243 (31%), Gaps = 54/243 (22%)

Query: 23  DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
           DCP  C C+ T    +  C       +P  +      L LN+N                 
Sbjct: 1   DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDN----------------- 39

Query: 83  LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
                                                     F     L  L L  N +T
Sbjct: 40  --------------------------------ELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
            +    F    +++ ++L   +I  +     + L  L++LNL  N++  +    F    +
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC-PP 261
           L +L+L  NP+ C+CHL  F  WL K  L      C  P  ++     D+   EF C   
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 262 NVT 264
           N  
Sbjct: 188 NSE 190

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI 324
           +++ +    A   V   C   G+P PT+ WL NG+           +           S+
Sbjct: 10  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ-----HWSL 64

Query: 325 TLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            + +V   D G YTC  EN  G+ +    LD
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.2 bits (145), Expect = 4e-12
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
            P    K E +++ + G +VT+ C V G P P ++W  N + L      + +        
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG------ 55

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                + +  V + D G Y C A N  G+   E  + 
Sbjct: 56  -----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           PP V  ++S+V   A  G +VT+ C   G PEPT+ W  +G+ + N   D    +E    
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED----DEKHIF 58

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            + S  +T+ NV   D  EY C AEN  G     I L 
Sbjct: 59  SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 55  SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
           +++  LDL NN+IS L   +    GL  L  + L  + I  +       LT L  ++L++
Sbjct: 241 TNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALTNLELNE 294

Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
           NQ+  +   + L    L  L L  N I+++       L  L+ +   + ++  V   +L 
Sbjct: 295 NQLEDISPISNL--KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLA 348

Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
           +LT +  L+   N++  L+         +  L L+  
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 6/116 (5%)

Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
             L    +T+        L  + T++     I S+  D + +L  L  +N + N+L  ++
Sbjct: 27  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 82

Query: 194 ESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHW 249
                    L  + ++ N       L +  N    +   +          L   + 
Sbjct: 83  P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 7e-11
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P  +   E   +R  G +V +   V G    T  W+   + +  S    +E  E      
Sbjct: 1   PQIIQFPEDQKVRA-GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE------ 53

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               +T+        G YT   EN  G+   +++L
Sbjct: 54  NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDA-- 316
           PP+            G    ++C  + G P     W  +G  +  +           +  
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEIN 360
           +  KS  +    VT  D+GEY C A+N  G A  S    +D  E+N
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 107

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 131 LKVLYLNGNPITELRAGQ-FPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLN 185
           ++ L +    +++ R  +  P L   + + L  C +          AL    AL  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 186 GNRL-----KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE 240
            N L       + + +  P+  ++ LSL                      L    LS   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 241 PGMLQTKHW 249
            G    +  
Sbjct: 124 LGDAGLQLL 132

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 147 GQFPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRL-----KHLSESVF 197
           G       L+ + L  C +           L+   +L  L+L+ N L       L ESV 
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 198 FPTPNLKTLSLDGNPW 213
            P   L+ L L    W
Sbjct: 423 QPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 56  DIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVH----RDTFKYLTILVE 109
           DIQ LD+   ++S      +  +   L   Q + L + G+ E          +    L E
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 110 VDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGN 139
           ++L  N++       + Q     + +++ L L   
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 90  NSGIREVHRDTFKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITELR 145
           ++G+RE+ +   +  ++L  + L+D  +          T L N  L+ L L+ N + +  
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 146 AGQFPK-----LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
             Q  +        L+ + L         +D       L++L  +   L+ +S
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLRVIS 460

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P ++T+ E       G +   SC   G+P PT+ WL  GQVL  S+   +   +      
Sbjct: 6   PRSMTVYE-------GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK------ 52

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
              +  + +V   D G Y+   EN  G    E +L + +
Sbjct: 53  YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +  +        G +      V G P+P   W  NG  +  S        E     +
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-----D 58

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               + + +VT  D+      A NI G  S    L
Sbjct: 59  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-------SFDLLEEE 312
           P N +          GG+V   C VY D +P I W+ + +   +           +L+  
Sbjct: 12  PANASTVV-------GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
             +   ++   + + NVT  DAGEYTC A N  G +     L
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 260 PPNVTIK--ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
            P++  K          G  VT+ C+ +G+P P I W        +              
Sbjct: 4   APSIKAKFPADTYALT-GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---------- 52

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                 + + NV   D G Y C AENI+G  + +  +
Sbjct: 53  --SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 3/141 (2%)

Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
              +  + +             +  ++   N   +  L       L  L+ + +    + 
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
            V  DA      L  LNL+ N L+ LS          + L L GNP  C C LR  + W 
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLHCSCALRWLQRWE 128

Query: 227 LKSKLYSHP--LSCTEPGMLQ 245
            +         L C   G L 
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLA 149

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 24  CPDTCRCKWTLGKKSALCKDANFTALPSTL--DSDIQVLDL-NNNKISYLTKEAFKSIGL 80
           CPD C      G     C           L    ++  L + N   + +L     +  GL
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55

Query: 81  LNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
             L+ + +  SG+R V  D F +   L  ++LS N +  L   T  G    + L L+GNP
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNP 114

Query: 141 I 141
           +
Sbjct: 115 L 115

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
             P  +T+ +       G  V ++C V G  EP I W+ +G V+ N     +   E   +
Sbjct: 1   GAPVKLTVSQ-------GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 53

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                 ++L +V   DAG Y C  E+     
Sbjct: 54  G----FLSLKSVERSDAGRYWCQVEDGGETE 80

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
           P   +K        G +    C V     P + W  + + L  S   +            
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY------NGN 55

Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
              +T+  V   D GEYT  A+N  G     + L+
Sbjct: 56  DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK 170
            L+   +  L     L    +  L L+ N +  L       L  L+ ++     + +V  
Sbjct: 4   HLAHKDLTVLCHLEQLLL--VTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV-- 58

Query: 171 DALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKS 229
           D + +L  L+ L L  NRL+  +        P L  L+L GN  C +  ++     +L S
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 35/153 (22%)

Query: 58  QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
           +VL L +  ++ L                               + L ++  +DLS N++
Sbjct: 1   RVLHLAHKDLTVL----------------------------CHLEQLLLVTHLDLSHNRL 32

Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHL 176
                        L+VL  + N +  +        P L+ + L + ++        L+  
Sbjct: 33  RA-LPPALAALRCLEVLQASDNALENVDGVANL--PRLQELLLCNNRLQQSAAIQPLVSC 89

Query: 177 TALESLNLNGNRLKHLS---ESVFFPTPNLKTL 206
             L  LNL GN L       E +    P++ ++
Sbjct: 90  PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 57  IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
           +  LDL++N++  L         L       L+ S     + D    L  L E+ L +N+
Sbjct: 22  VTHLDLSHNRLRALPPALAALRCL-----EVLQASDNALENVDGVANLPRLQELLLCNNR 76

Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITE---LRAGQFPKLPYLKTI 158
           +        L +  RL +L L GN + +   ++      LP + +I
Sbjct: 77  LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP+            G    ++C    G P     W  +G V+  +            + 
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 319 EKSVS-ITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
             +   +    ++  D GEY+C A N  G      ++ +
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P  T     +    G      C V G P+P ++W  +   +  S    ++ +E      
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS- 66

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               +T+  V   D  +YTC A N  G A+    L
Sbjct: 67  ----LTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 14/95 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P     KE       G +  + C V     PTI+W   G+ +               +  
Sbjct: 8   PTPQEFKE-------GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV-------RFIVL 53

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            +  + +  +   D G Y C    +         +
Sbjct: 54  SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 28/123 (22%)

Query: 260 PPNVTIKESM-----VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
           PP + +         ++  AG  + +   + GDP PT++W       + +      +   
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 315 DALF-----------------------EKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351
           D                          +     T+      D G YT   +N  G     
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 352 ISL 354
           +++
Sbjct: 124 LTV 126

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 7e-08
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 120 LHQDTFL-GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI--HSVHKDALIHL 176
           L  D  L   +   VL    +    LR      +P L ++ L + ++         +   
Sbjct: 32  LRSDPDLVAQNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90

Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC-DCHLRSFRNWLLK 228
             L+ LNL+GN LK   E        L+ L LDGN          ++ + + +
Sbjct: 91  PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 45  NFTALPSTLDSDI-QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR--EVHRDTF 101
              + P  +  +I  VL+  ++  + L         +  L  + L N+ +   +      
Sbjct: 31  GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN---IPELLSLNLSNNRLYRLDDMSSIV 87

Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-------RAGQFPKLPY 154
           +    L  ++LS N++    +   +   +L+ L+L+GN +++         +    + P 
Sbjct: 88  QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPK 147

Query: 155 LKTI 158
           L  +
Sbjct: 148 LLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 33  TLGKKSALCKDANFTALPSTLDSD---IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK 89
                  L + ++  A    ++ +   +  L+L+NN++  L   +       NL+ + L 
Sbjct: 40  AQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 99

Query: 90  NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL-----KVLYLNGNPIT 142
            + ++            L E+ L  N ++   +D       +     K+L L+G+ + 
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
           P  VT++E        G +VT  C      P  T++W         S             
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA----------- 49

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
            + +  +T+ NV   DAG Y C   N+     G  +L 
Sbjct: 50  MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
           P +V +  +        +  +   V G P P++ WL NG VL+ +S       E      
Sbjct: 4   PASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
            +   + L   T ++ G YT  A N  G AS  I  
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +T  ES     +  +  +   V G+P+P + W  NG +L+  S  +  +       E
Sbjct: 4   APTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNE-SKYICTKIHVTNHTE 59

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEIN 360
               + L N T ++ G+YT  A+N  G    +IS      P I+
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
           PP V   +S      G    + C     P  T   W         +  +  E     +  
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 319 EKSVSITLFNVTDLD-AGEYTCYAENIRGNASGEISLD 355
           +    + + N+      G+Y C   + +G+    I+L 
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           P +    E      A   VT++C    +P  T  W +NG  L            GD +  
Sbjct: 11  PAHTLFPEGS----AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI- 65

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISL 354
                    V   DAG Y C A N RG   S E SL
Sbjct: 66  ------SNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 26/101 (25%)

Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
            E  CP N T  E           T  C  +G+P P +  L +G                
Sbjct: 6   DERDCPGNWTWPE-------NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------- 50

Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
                         VT    G Y C A + +G  + E++++
Sbjct: 51  -----------SVTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA----LFEKSVSIT 325
           +     GNVT        P   +LW      +                   L   S S+T
Sbjct: 5   IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 326 LFNVTDLDAGEYTCYAENIRGNAS 349
           ++N+T  D  EY   + NI     
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMK 87

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +     +   G + T+ C V         T+      + LH  +F        +A
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
               + +       +     ++C A     +  G I  
Sbjct: 62  ----TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 253 KAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
           +   F    NV +         G   T  C   G         L G  + ++    ++  
Sbjct: 1   RTPHFLRIQNVEVNA-------GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVT 53

Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
                     S  + N T  DAG+Y C      G  
Sbjct: 54  SSR---RFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 9e-07
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 24 CPD-TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS 77
          C    C C         LC+++  T +PS L  +   L     K+  + K AF  
Sbjct: 1  CHHRICHCSNR----VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG 51

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 25/75 (33%)

Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
           L+LN N I E+    F      +     +  +  +  D     +    L+++  R+  L 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 194 ESVFFPTPNLKTLSL 208
                    L+  S 
Sbjct: 218 SYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 16/81 (19%), Positives = 31/81 (38%)

Query: 84  QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
             ++L  +GI+E+H   F    +       +N +  L  D F G     +L ++   I  
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 144 LRAGQFPKLPYLKTIELQHCQ 164
           L +     L  L+     + +
Sbjct: 216 LPSYGLENLKKLRARSTYNLK 236

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS--------SFDLLEE 311
           P  V+     +  + G  + + C V G       W  NG V+                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357
            +  +     ++I+           +TC+A+N  G  +  I L  P
Sbjct: 62  NKRRSTLITVLNISEIESRF-YKHPFTCFAKNTHGIDAAYIQLIYP 106

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 70  LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND 129
           L ++A +    +  + + L+   I  +  +    L     +D SDN+I  L     L   
Sbjct: 7   LIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRR- 64

Query: 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV-HKDALIHLTALESLNLNG-- 186
            LK L +N N I  +  G    LP L  + L +  +  +   D L  L +L  L +    
Sbjct: 65  -LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 187 -NRLKHLSESVFFPTPNLKTLSLDGNP 212
               KH    V +  P ++   LD   
Sbjct: 124 VTNKKHYRLYVIYKVPQVRV--LDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 12/121 (9%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP---TP 201
           +A Q+      + ++L+  +I  + ++    L   ++++ + N ++ L          T 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTL 68

Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261
            +    +       D  L      +L +              L++  +  +         
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 262 N 262
           +
Sbjct: 129 H 129

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P   + +       G  + ++  +  D +  + WL NGQ +  S    + E  G     
Sbjct: 13  EPAYQVSK-------GHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA---- 60

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              ++T+   +  D   Y C     + +  
Sbjct: 61  -KRTLTISQCSLADDAAYQCVVGGEKCSTE 89

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
           P  V +      +  G  +T+ C V G     + T++ L   + L               
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-------- 55

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                V+ T+    D    +++C  E        E+  
Sbjct: 56  -EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
           P+     +    + G ++  SC   G P P + WL +GQ L + +               
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI----------EVS 51

Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
              +    +   D+G Y C AEN  G       L
Sbjct: 52  GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +  + + V+        + C + G+ +                     +E   AL +
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSW------KKDGKSYNWQEHNAALRK 55

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              S+        D G Y C+AE   G AS
Sbjct: 56  DEGSLVFLRPQASDEGHYQCFAETPAGVAS 85

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 17/109 (15%)

Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-----------------LNGQVLHNSS 305
           V      +    G    + C +      T + +                  +        
Sbjct: 5   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
           +    E   +++ E  V++ + NV   D G YTC+  +        + L
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
              N  +   +        L+ L ++ N + EL A      P L+ +      +  V + 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE- 321

Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD 209
                  L+ L++  N L+   +       +++ L ++
Sbjct: 322 ---LPQNLKQLHVEYNPLREFPDIP----ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
               N  +          P L+ + + + ++  +          LE L  + N L  + E
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE 321

Query: 195 SVFFPTPNLKTLSLDGNP 212
                  NLK L ++ NP
Sbjct: 322 LP----QNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 87  YLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA 146
               +      R        L E+++S+N++  L          L+ L  + N + E+  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL--PALPPR--LERLIASFNHLAEVP- 320

Query: 147 GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
                   LK + +++  +            ++E L +N
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPD----IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214
              +EL +  + S+ +        LESL  + N L  L E       +LK+L +D N   
Sbjct: 40  AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLK 91

Query: 215 CDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDD 251
               L     +L  S      L   +          D
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 128

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD--LLEEEEGDALF 318
            +V   +S V      ++ ++C   G   P + W                +     D + 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
             S  IT  +VT  D GEYTC      G   GE+S+ L
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
             + T          G  V + C V  + +  + W  NG+ +                  
Sbjct: 7   LEDTTAYC-------GERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV----EG 54

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
           K   + +   T  DA EY+      + +A 
Sbjct: 55  KKHILIIEGATKADAAEYSVMTTGGQSSAK 84

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 13/105 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQV---LHNSSFDLLEEEE 313
           P +  +         GG++T S  V G      P + W     V           L +  
Sbjct: 11  PQDGEVTV-------GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
             A       + + +      G Y C             +L + E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 13/105 (12%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQ---VLHNSSFDLLEEEE 313
           P   T+K        G ++T    V  +    +PTI W                 L+E  
Sbjct: 7   PQGGTVKV-------GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 59

Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
                  +  + +    D  AG Y C         S    L++ E
Sbjct: 60  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 104

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P   +   ++    G +VT++C      +   +  +  +    S               
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---- 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAEN 343
               + L +V   D+G Y+CY   
Sbjct: 62  ----LLLRSVQLHDSGNYSCYRAG 81

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 6/95 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P +      +  +AG    +     G P+PT  W +       +   L++ +       
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                   +    D+G Y    +N  G       +
Sbjct: 62  F------PSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ--VLHNSSFDLLEEEEGDAL 317
              V   E  V       V +SC   G   P + W  +           + +     D +
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
                 IT  +VT  D G YTC      GN+ GE+ + L
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI 324
           + + M+ +  G    + C    +P     +  NG+ ++ +  D +              +
Sbjct: 9   VSKDMMAKA-GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN----RTSGKRL 63

Query: 325 TLFNVTDLDAGEYTCYAENIRGNA 348
                   D G YTC  +N  G  
Sbjct: 64  LFKTTLPEDEGVYTCEVDNGVGKP 87

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 259 CPPNVTIKE-SMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDA 316
           C   + IK  S     AG    + C V      P + W            D     + + 
Sbjct: 1   CDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEK 60

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
                + +    V   D G Y C A        S   +L + ++
Sbjct: 61  NISFFI-LHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV 103

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 22/120 (18%)

Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT----ILWLLNG-------------- 298
           FA   ++T  E M+ +  G    + C     PE      I WL++               
Sbjct: 1   FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYS 60

Query: 299 ----QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
                  +            + L     SI + N+   D G Y C  +   G A+ +I L
Sbjct: 61  GDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 120

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
           PP ++  ++      G    + C++   P P  +       VL + +      E      
Sbjct: 7   PPIISSTQTQHALH-GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 319 EKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISL 354
               ++T+ N+        Y C A N  G+ +  I L
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 102

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
            P + ++      + G +V + C V G       W+L       +               
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 61

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
              S              TC+AEN  G A   + ++
Sbjct: 62  NVTSDLNRKN-------VTCWAENDVGRAEVSVQVN 90

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
           PP V   E   +R       +   V G+P PT+ WL NGQ L  S    +E  +   +  
Sbjct: 5   PPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS- 60

Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
               +     T  + G YT  A+N  G A+  I+  
Sbjct: 61  -EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 153 PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
             L  ++L++ +I+      L  L  L SLN++ N L   + +            +   N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL--QRFDVSAYANN 301

Query: 212 PWCCDCHL 219
              C   L
Sbjct: 302 KCLCGSPL 309

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 275 GGNVTMSC-YVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALF-EKSVSITLFNVTD 331
           G  + ++        +   + W     ++      +    +  A     +  + + N+T 
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 332 LDAGEYTCYAENIRGNASGEISLDL 356
            D+G Y     +  G      +LDL
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDL 94

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 267 ESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
           + +++  A       C +   + + TI W  +      S       E+   + +    + 
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVS------TEQASRIHQHKEKLW 62

Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISL 354
                  D+G Y C   N       +IS 
Sbjct: 63  FVPAKVEDSGHYYCVVRNSSYCLRIKISA 91

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 160 LQHCQIHSVHKDALIH------LTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSL 208
           L  C + +    A++          L++L L  N +     + L   +    P+L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 209 DGNP 212
           +GN 
Sbjct: 310 NGNR 313

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 5/156 (3%)

Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP----KLPYLKTIELQHCQIH 166
            ++      +     L +D +K + L+GN I    A            L+  E       
Sbjct: 14  AITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
            V  +    L  L    L   +L  +  S     P  +   +D              N  
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 227 LKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
           L  +  +      +   +  K  +    +   C  N
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 19/84 (22%)

Query: 113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
           +    A +   + L N  L+ L L  N I          +                    
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-------------------I 297

Query: 173 LIHLTALESLNLNGNRLKHLSESV 196
              +  L  L LNGNR     + V
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVV 321

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEE-EEGDA 316
           PP V +             T+ C          T+ WL + Q +    F+  +    GD 
Sbjct: 4   PPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDG 59

Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAE 342
            ++  +++    V   +   YTC  E
Sbjct: 60  TYQGWITLA---VPPGEEQRYTCQVE 82

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWL--LNGQVLHNSSFDLLEEEEG---------D 315
           + +V+ + G  V ++C           W      ++L N    L +              
Sbjct: 1   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60

Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
              + +  + + N+   D+  Y C  E+ +    
Sbjct: 61  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 94

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 50/189 (26%)

Query: 60  LDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
            +L    ++    +      L ++ +I   NS I+ V     +YL  + ++ L+ N++  
Sbjct: 29  DNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD 82

Query: 120 LHQDTFLGNDRLKVLYLNGNPI-------------------------------------- 141
           +     L N     L  N                                          
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 142 --TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
                      +L  L T+ L+  QI  +    L  LT L++L L+ N +  L       
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAG 198

Query: 200 TPNLKTLSL 208
             NL  L L
Sbjct: 199 LKNLDVLEL 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 137 NGNPITELRAGQFP--KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
               I  +    FP   L     I      +      A   L  + +L+  G  +  +  
Sbjct: 5   QPTAINVI----FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG 58

Query: 195 SVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHW 249
             +    NL  L L  N       L++           +   + +    LQ+   
Sbjct: 59  VQYL--NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT 111

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
                 +   V    G  V  +C      P  +  WLLN       +       +     
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-- 61

Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLA 362
               ++ +      D G Y+C+A +     +  +     +++LA
Sbjct: 62  ----NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLA 101

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 273 EAGGNVTMSCYVY------GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
              G+  + C          +  P + W  + + L   +      ++          + +
Sbjct: 12  PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---------RLIV 62

Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISLDL 356
            NV +   G YTC+A          I+  +
Sbjct: 63  MNVAEKHRGNYTCHASYTYLGKQYPITRVI 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	610
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.76
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.59
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.46
d2avga1	110	Cardiac myosin binding protein C, different domain	99.45
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.45
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.44
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.44
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.43
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.43
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.43
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.43
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.41
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.39
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.38
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.36
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.35
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.34
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.34
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.33
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.3
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.29
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.28
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.25
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.23
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.23
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.22
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.18
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.13
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.12
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.87
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.82
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.71
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.68
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.47
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.31
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.18
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.09
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.07
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.07
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.06
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.06
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.05
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.05
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.05
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.04
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.02
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.0
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.99
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.99
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	97.97
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.96
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.95
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	97.95
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.95
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.94
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.93
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.93
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.92
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.91
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.9
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.9
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	97.89
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.88
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.87
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	97.86
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.86
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.86
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.84
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.83
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.82
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.82
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.81
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.81
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.78
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.76
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.76
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.75
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.75
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.75
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.75
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.74
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.73
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.73
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.73
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.73
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.73
d2avga1	110	Cardiac myosin binding protein C, different domain	97.71
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.71
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.69
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.68
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.64
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.64
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.64
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.63
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.63
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.62
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.62
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.61
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.61
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.6
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.58
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.57
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.57
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.57
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.56
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.54
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.54
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.54
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.52
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.51
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.51
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.5
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.5
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.49
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.49
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.49
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.48
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.48
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.47
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.46
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.44
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.44
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.42
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.41
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.41
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.41
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.4
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.4
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.4
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.39
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.39
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.38
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.37
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.37
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.37
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.35
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.35
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.33
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.32
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.31
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.26
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.26
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.26
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.26
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.26
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.25
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.24
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.24
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.23
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.22
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.22
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.2
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.19
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.18
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.17
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.17
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.16
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.16
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.15
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.15
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.15
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.14
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.11
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.11
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.1
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.1
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.09
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.09
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.08
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.07
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.07
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.05
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.05
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.05
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.04
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.02
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.02
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.02
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.01
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.0
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.99
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.98
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	96.98
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.94
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	96.91
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	96.88
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.88
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.87
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.86
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.84
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.84
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.83
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.83
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.81
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.8
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.78
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.78
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.77
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.72
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.71
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.69
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.66
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.66
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.58
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.56
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.52
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.51
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.41
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.28
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.25
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.24
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.2
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.19
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.17
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.16
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.13
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.06
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.03
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.02
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.0
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.99
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.99
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.87
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.83
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.78
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.77
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.53
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.51
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.5
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.47
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.47
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.46
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.46
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.44
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.33
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.33
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	95.3
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	95.26
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.25
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.23
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	95.22
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.21
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.2
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	95.18
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.11
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.11
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.08
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.06
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.05
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.04
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.01
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.98
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.96
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.96
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	94.93
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	94.92
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.85
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.83
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	94.83
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	94.83
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.8
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.76
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.75
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.73
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	94.68
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.66
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.64
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	94.64
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.62
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.59
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	94.57
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.56
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.55
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	94.5
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.49
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	94.39
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	94.29
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.27
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	94.24
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	94.23
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	94.21
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.16
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.95
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	93.95
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.93
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	93.86
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.86
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.63
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	92.66
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	92.65
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	92.56
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	92.14
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	92.05
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	91.67
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	91.24
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	91.23
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	90.2
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	84.67
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	83.32
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	80.8
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	80.73
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	80.17

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=257.36  Aligned_cols=232  Identities=29%  Similarity=0.494  Sum_probs=192.8

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc------
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV------   96 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i------   96 (610)
                      +||..|.|.. .....|+|.+.+|+++|..+|.++++|+|++|+|+.+++..|.  ++.+|++|++++|.|..+      
T Consensus         1 ~cp~~C~C~~-~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~   77 (284)
T d1ozna_           1 PCPGACVCYN-EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT   77 (284)
T ss_dssp             CCCTTCEEEC-SSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCCEEcC-CCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhh--cccccccccccccccccccccccc
Confidence            5999999963 3357899999999999999999999999999999999998887  677777777776665422      


Q ss_pred             -------------------chhhhcCCCCCcEEEcc------------------------CCCCCCCCcccccCCCCCcE
Q psy10487         97 -------------------HRDTFKYLTILVEVDLS------------------------DNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        97 -------------------~~~~f~~l~~L~~LdLs------------------------~n~l~~l~~~~f~~l~~L~~  133 (610)
                                         .+.+|+++++|++|+++                        +|+|+.+++..|..+.+|+.
T Consensus        78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh
Confidence                               23344555555555555                        44555555666777778888


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      |+|++|.++.+.+..|.++++|+.|++++|++..+.+..|..+++|+.|++++|.+..+.+..|..+.+|+.|++++|+|
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            88888888888888888888888888888888888888888888999999999999999888899999999999999999


Q ss_pred             cccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccc
Q psy10487        214 CCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF  257 (610)
Q Consensus       214 ~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~  257 (610)
                      .|+|.+.|+..|++........+.|..|..+.|+.+.++...++
T Consensus       238 ~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         238 VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             ECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             CCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence            99999999999999888888899999999999998888887776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-28  Score=240.26  Aligned_cols=199  Identities=27%  Similarity=0.423  Sum_probs=168.6

Q ss_pred             CCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCC
Q psy10487         26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT  105 (610)
Q Consensus        26 ~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~  105 (610)
                      +-|.|.+..+..+|+|++++|++||..++.++++|+|++|+|+.++...|.  ++++|++|+|++|+|+.++.  +..++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l~   77 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTLP   77 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--ccccc
Confidence            579999888888999999999999999999999999999999999999998  79999999999999998864  56778


Q ss_pred             CCcEEEccCCCCCCCCcccccCCCCCcEEE------------------------eeCccccccCcCcCCCCCCccEEEcc
Q psy10487        106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLY------------------------LNGNPITELRAGQFPKLPYLKTIELQ  161 (610)
Q Consensus       106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~------------------------Ls~N~l~~l~~~~~~~l~~L~~L~L~  161 (610)
                      +|++|+|++|++..+.. .|.++++|+.|+                        +++|.++.+.+..+..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccccccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            88888888887765532 344445555554                        55555555666667778899999999


Q ss_pred             CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc
Q psy10487        162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK  230 (610)
Q Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~  230 (610)
                      +|+|+.+.+..|..+.+|+.|+|++|+|+.++...+ .++.|+.|+|++|+|.|+|.+.||..|+....
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~  224 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             cccccccCccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence            999999988889999999999999999999987655 68899999999999999999999999998543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1e-26  Score=217.25  Aligned_cols=186  Identities=27%  Similarity=0.521  Sum_probs=137.4

Q ss_pred             CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCC-CChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISY-LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~-l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      +||..|.|.+    ..|+|++++|++||..++.++++|+|++|+|+. +....|.  ++.+|++|+|++|.+..+.+++|
T Consensus         1 ~CP~~C~C~~----~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEEcC----CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccC--CCceEeeeecccccccccccccc
Confidence            5999999985    589999999999999999999999999999875 5555555  45566666666555555555555


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES  181 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (610)
                      ..+.+|++|+|++|+|..++++.                        |.++++|+.|+|++|+|+.++++          
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~------------------------F~~l~~L~~L~L~~N~l~~i~~~----------  120 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKM------------------------FLGLHQLKTLNLYDNQISCVMPG----------  120 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSS------------------------STTCTTCCEEECCSSCCCEECTT----------
T ss_pred             ccccccceeeeccccccccCHHH------------------------HhCCCcccccccCCccccccCHH----------
Confidence            55555555555555555555444                        44444444444444444444332          


Q ss_pred             cccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487        182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP  261 (610)
Q Consensus       182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P  261 (610)
                                    .|..+++|++|++++|+|.|+|.+.|+..|+....+....++|..|..+.+..+.++...++.|.+
T Consensus       121 --------------~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         121 --------------SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             --------------SSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCC
T ss_pred             --------------HhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCCC
Confidence                          234455677788889999999999999999998888888999999999999999999999999975


Q ss_pred             c
Q psy10487        262 N  262 (610)
Q Consensus       262 ~  262 (610)
                      .
T Consensus       187 ~  187 (192)
T d1w8aa_         187 E  187 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3e-22  Score=200.77  Aligned_cols=184  Identities=30%  Similarity=0.483  Sum_probs=141.7

Q ss_pred             CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487         22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF  101 (610)
Q Consensus        22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f  101 (610)
                      ..||..|+|.+    ..++|.+.+|+++|.+++.++++|+|++|+|+.+++..|.  ++++|++|++++|.+..+.+.+|
T Consensus         2 ~~~p~~c~c~~----~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           2 PVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCEecC----CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhh
Confidence            47999999985    5899999999999999999999999999999999999998  79999999999999999999999


Q ss_pred             cCCCCCcEEEccCCCCCCCCc-----------------------------------------------ccccCCCCCcEE
Q psy10487        102 KYLTILVEVDLSDNQIAWLHQ-----------------------------------------------DTFLGNDRLKVL  134 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l~~-----------------------------------------------~~f~~l~~L~~L  134 (610)
                      .+++.|++|++++|+|+.++.                                               ..|..+++|+.+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             hCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence            999999999999998876541                                               223455667777


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ++++|.+..++...   +++|+.|++++|.+....+..|..+..++.|++++|.+..+....+..+++|+.|++++|.+.
T Consensus       156 ~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         156 RIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             ECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ccccCCccccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            77777666554322   345666666666666665556666666666666666666666656666666666666666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.6e-19  Score=170.94  Aligned_cols=185  Identities=23%  Similarity=0.361  Sum_probs=140.7

Q ss_pred             CCC-CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcc-cchhhh
Q psy10487         24 CPD-TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE-VHRDTF  101 (610)
Q Consensus        24 Cp~-~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~-i~~~~f  101 (610)
                      |+. .|+|..    +.++|.+.+++++|..++.++++|+|++|.|+.++...|.  ++++|++|+|++|.+.. +++.+|
T Consensus         1 ~~~~~C~C~~----~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           1 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             CCCSSEEECS----SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCcCCCcC----CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhh--ccchhhhhhhccccccceeecccc
Confidence            665 499974    6899999999999999999999999999999999999998  89999999999998765 677889


Q ss_pred             cCCCCCcEEEccC-CCCCCCCcccccCCCCCcEEEeeCccccccCcC-------------------------cCCCC-CC
Q psy10487        102 KYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG-------------------------QFPKL-PY  154 (610)
Q Consensus       102 ~~l~~L~~LdLs~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-------------------------~~~~l-~~  154 (610)
                      .++..+++|++.. |++..+.+..|.++++|+.|++++|.+......                         .|..+ ..
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~  154 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  154 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998765 789888889999999999999999987765432                         22222 24


Q ss_pred             ccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ++.|++++|+++.+....|.....++.+++.+|+++.++...|..+++|+.|++++|.+.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            445555556665555444433222333455666676666666667777777777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-18  Score=153.43  Aligned_cols=149  Identities=24%  Similarity=0.353  Sum_probs=96.4

Q ss_pred             CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487         24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY  103 (610)
Q Consensus        24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~  103 (610)
                      ||..|.|...   ..++|.++++.++|..++                                                .
T Consensus         1 CP~~C~c~~~---~~l~c~~~~~~~~p~~l~------------------------------------------------~   29 (156)
T d2ifga3           1 CPDACCPHGS---SGLRCTRDGALDSLHHLP------------------------------------------------G   29 (156)
T ss_dssp             CCSSSCCSSS---SCEECCSSCCCTTTTTSC------------------------------------------------S
T ss_pred             CcCCCCcCCC---CeEEecCCCCccCccccc------------------------------------------------C
Confidence            8999999853   468888888877764221                                                1


Q ss_pred             CCCCcEEEccCC-CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487        104 LTILVEVDLSDN-QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL  182 (610)
Q Consensus       104 l~~L~~LdLs~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  182 (610)
                      +++|++|+|++| .|+.+++..|.++++|+.|+|++|+|+.+.+.+|..+                        ++|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l------------------------~~L~~L   85 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT------------------------PRLSRL   85 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC------------------------SCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccc------------------------ccccce
Confidence            233444444433 3555555555555555555555555555555445444                        445555


Q ss_pred             ccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCc
Q psy10487        183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKH  248 (610)
Q Consensus       183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~  248 (610)
                      +|++|+|+.++...|..+ .|+.|++++|+|.|+|.+.|+..|.....  +....++|..+..+.+..
T Consensus        86 ~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             eccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            555555555555555444 58899999999999999999999997543  345678999888776643

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=6.4e-16  Score=123.62  Aligned_cols=86  Identities=26%  Similarity=0.421  Sum_probs=76.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|++.|++||..+....+.  .        ...+.|.|.+++.+|+|.|+|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~--~--------~~~~~L~i~~v~~~D~G~Y~C~   71 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI--E--------VSGGELRFSKLVLEDSGMYQCV   71 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSE--E--------EETTEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccccee--e--------eeeeeEEEEeecccCCEEEEEE
Confidence            67888889999999999999999999999999999999998765532  1        1234899999999999999999


Q ss_pred             eecCCcceeEEEEEEc
Q psy10487        341 AENIRGNASGEISLDL  356 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V  356 (610)
                      |.|..|.+.+++.|.|
T Consensus        72 a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          72 AENKHGTVYASAELTV   87 (89)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEE
Confidence            9999999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.6e-16  Score=149.59  Aligned_cols=151  Identities=23%  Similarity=0.258  Sum_probs=123.9

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      .+.+++.+++.++.+|.+..     ++|++|+|++|.|+.+++.+|.++++|++|+|++|+|+.++.  +..+++|+.|+
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp-----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~   83 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             CCeEEEccCCCCCeeCcCcC-----cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccc
Confidence            45667999999999986432     479999999999999999999999999999999999998864  67899999999


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      |++|+++.... .+..+++|+.|++++|.+..+....+..+.++..|++++|.+..++...+..++.++.+++++|.+.
T Consensus        84 Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          84 LSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             CCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            99999987754 5777888888888888887777666677777777777777777777766666777777777777654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=125.36  Aligned_cols=97  Identities=20%  Similarity=0.245  Sum_probs=81.3

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....+.......+      ...|.|.+++.+|+|.|+|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~   74 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN------GSKLTILAARQEHCGCYTLL   74 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSS------EEEEEETTCCTTTCEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecc------eeEEEEeeCCcccCEEEEEE
Confidence            556667788999999999999999999999999999999987766543332222      24899999999999999999


Q ss_pred             eecCCcceeEEEEEEcCcccccc
Q psy10487        341 AENIRGNASGEISLDLPEINLAT  363 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V~~~~~~p  363 (610)
                      |.|..|.++.++.|.|.+.+.+|
T Consensus        75 a~N~~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          75 VENKLGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             EECSSCEEECCEEEEEECSCSCC
T ss_pred             EEECCCEEEEEEEEEEEecCCCc
Confidence            99999999999999997665544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=6.7e-16  Score=125.82  Aligned_cols=92  Identities=22%  Similarity=0.314  Sum_probs=78.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      .|.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+..+.+.......+      ...|.|.+++.+|+|.|+|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C   74 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN------DYGLTINRVKGDDKGEYTV   74 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTT------EEEEEESCCCSGGGSCEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCC------eeEEEeCCCceecCEEEEE
Confidence            3788888999999999999999999999999999999999987765433322222      2479999999999999999


Q ss_pred             EeecCCcceeEEEEEEcC
Q psy10487        340 YAENIRGNASGEISLDLP  357 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|..|.++.++.|.|.
T Consensus        75 ~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          75 RAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             EEEETTEEEEEEECCEEE
T ss_pred             EEEECCCEEEEEEEEEEe
Confidence            999999999999999884

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=3.9e-15  Score=139.72  Aligned_cols=160  Identities=25%  Similarity=0.402  Sum_probs=116.8

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      +.+++.+.+++.++. ....+|++|+|++|+|+.+++  +.  .+++|++|++++|+|+.++  .|.++++|+.|++++|
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTS
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cc--cCccccccccccccccccc--cccccccccccccccc
Confidence            567777777777653 224578888888888877663  33  5778888888888887765  3777888888888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      .+..+.  .+.++++|+.+++++|.++....  +..+++|+.+++++|++..+.  .+.++++|+.|+|++|+|++++  
T Consensus       123 ~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l~--  194 (210)
T d1h6ta2         123 GISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--  194 (210)
T ss_dssp             CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG--
T ss_pred             cccccc--ccccccccccccccccccccccc--ccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCCh--
Confidence            777654  36777888888888887776543  556778888888888887764  3677788888888888887764  


Q ss_pred             cccCCCcccEEecCC
Q psy10487        196 VFFPTPNLKTLSLDG  210 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~  210 (610)
                      .+..+++|+.|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            367777888887753

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=123.28  Aligned_cols=93  Identities=22%  Similarity=0.270  Sum_probs=79.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.|...+....+.+|+.++|.|.+.|+|.|.+.|++|+..+....+.......++     ...|+|.+++.+|+|.|+|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~c   78 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN-----VCELVIRDVTGEDSASIMV   78 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT-----EEEEEECSCCGGGCEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccce-----EEEEEeccCccccCEEEEE
Confidence            47788888899999999999999999999999999999999987665433322221     2479999999999999999


Q ss_pred             EeecCCcceeEEEEEEcC
Q psy10487        340 YAENIRGNASGEISLDLP  357 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V~  357 (610)
                      .|.|..|.+++.+.|.|.
T Consensus        79 ~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          79 KAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCcEEEEEEEEEEE
Confidence            999999999999999884

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.2e-15  Score=137.08  Aligned_cols=145  Identities=27%  Similarity=0.372  Sum_probs=88.4

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      +++.|++++|.|+.+..  +.  .+++|++|+|++|+|+.+.+  |+++++|++|++++|.+..++.  +.++++|+.|+
T Consensus        41 ~l~~L~l~~~~i~~l~~--l~--~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~  112 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  112 (199)
T ss_dssp             TCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             CCCEEECCCCCCCCccc--cc--cCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--ccccccccccc
Confidence            56666666666666542  33  35666666666666666543  6666666666666666665542  56666666666


Q ss_pred             eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      +++|.+..+..  +..+++|+.|++++|++..+.  .+..+.+|+.|++.+|+++++.+  +..+++|+.|++++|++.
T Consensus       113 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCC
Confidence            66666655432  555666666666666665552  35556666666666666666543  556666666666666543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.59  E-value=2.4e-15  Score=123.70  Aligned_cols=94  Identities=24%  Similarity=0.376  Sum_probs=80.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .+|.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++||..+..+.+........     ....|.|.+++.+|+|.|+
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~   81 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE-----GNCSLTISEVCGDDDAKYT   81 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTT-----CEEEEEESSCCGGGCEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecC-----ceeeeEecCCCHHhCEEEE
Confidence            35888888889999999999999999999999999999999998776544333222     1358999999999999999


Q ss_pred             EEeecCCcceeEEEEEEcC
Q psy10487        339 CYAENIRGNASGEISLDLP  357 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V~  357 (610)
                      |+|.|.+|.+++++.|.|.
T Consensus        82 C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          82 CKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCcEEEEEEEEEEE
Confidence            9999999999999999884

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=1.3e-15  Score=123.12  Aligned_cols=91  Identities=18%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.|...+.++.+.+|+++.|.|.+.|+|.|.+.|++++..+....+.......+      .+.|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~c   75 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSS------TTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETT------EEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccccc------ceeeccccccccccEEEEE
Confidence            5778778889999999999999999999999999999999887766543333222      3589999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|..|.+++++.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=2.7e-15  Score=150.01  Aligned_cols=193  Identities=18%  Similarity=0.253  Sum_probs=121.1

Q ss_pred             CCCCCCCCCCeeCcc-------CC---CcEEEcCCCCCC---ccCcccC--CCccEEEeec-CCCC-CCChhhhcccCCC
Q psy10487         19 PDWTDCPDTCRCKWT-------LG---KKSALCKDANFT---ALPSTLD--SDIQVLDLNN-NKIS-YLTKEAFKSIGLL   81 (610)
Q Consensus        19 ~~~~~Cp~~C~C~~~-------~~---~~~~~C~~~~l~---~lP~~l~--~~L~~L~L~~-n~i~-~l~~~~~~~~~l~   81 (610)
                      ..|..--.+|.|.|.       .+   ...++..+.++.   .+|..+.  .+|++|+|++ |++. .++ ..|.  +|+
T Consensus        25 ~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~--~L~  101 (313)
T d1ogqa_          25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIA--KLT  101 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGG--GCT
T ss_pred             CCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-cccc--ccc
Confidence            567644455766553       21   133444554454   4676664  4889999986 7777 454 4455  588


Q ss_pred             CccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCC----------
Q psy10487         82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPK----------  151 (610)
Q Consensus        82 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~----------  151 (610)
                      +|++|+|++|++..+.+..+..+..|+.++++.|++....+..|..+++|+.+++++|.+....+..+..          
T Consensus       102 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~  181 (313)
T d1ogqa_         102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI  181 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred             ccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccc
Confidence            9999999999888887777777888888888887777666667777777777777777665433322322          


Q ss_pred             --------------------------------------CCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487        152 --------------------------------------LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS  193 (610)
Q Consensus       152 --------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  193 (610)
                                                            +.+|+.|++++|.+.... ..+..+++|+.|+|++|++++..
T Consensus       182 ~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccC
Confidence                                                  333444444444443332 23444556666666666666444


Q ss_pred             cccccCCCcccEEecCCCcccc
Q psy10487        194 ESVFFPTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       194 ~~~~~~~~~L~~l~l~~N~~~c  215 (610)
                      +..+..+++|+.|++++|.+..
T Consensus       261 P~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         261 PQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEE
T ss_pred             ChHHhCCCCCCEEECcCCcccc
Confidence            4456666667777777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=6.3e-15  Score=146.65  Aligned_cols=174  Identities=21%  Similarity=0.342  Sum_probs=94.9

Q ss_pred             cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcc------------------------cCCCCccEEEcccCC
Q psy10487         37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS------------------------IGLLNLQRIYLKNSG   92 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~------------------------~~l~~L~~L~L~~n~   92 (610)
                      ..+++.+++++.+|......++.|++.+|.+..+....+..                        .++.+|+.+++.+|.
T Consensus        82 ~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            45666666677776666666677777777666666554431                        023344455555555


Q ss_pred             CcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHH
Q psy10487         93 IREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDA  172 (610)
Q Consensus        93 l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (610)
                      +..++..   .+++|++|++++|.+....+..|.++..++.|++++|.++.+.+..|.++++|+.|+|++|+|+.++ ..
T Consensus       162 l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~  237 (305)
T d1xkua_         162 ITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GG  237 (305)
T ss_dssp             CCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TT
T ss_pred             ccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc-cc
Confidence            4444322   1344555555555555555555555555555555555555555555555555555666555555552 34


Q ss_pred             hhcCccccccccccccccccCccccc------CCCcccEEecCCCccc
Q psy10487        173 LIHLTALESLNLNGNRLKHLSESVFF------PTPNLKTLSLDGNPWC  214 (610)
Q Consensus       173 ~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~L~~l~l~~N~~~  214 (610)
                      |..+++|+.|+|++|+|+.+....|.      .+..|+.|++.+|+|.
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            55555555566655555555443332      2344555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-15  Score=148.76  Aligned_cols=174  Identities=24%  Similarity=0.319  Sum_probs=147.0

Q ss_pred             cCCCCCCccCcc-cC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCC
Q psy10487         41 CKDANFTALPST-LD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI  117 (610)
Q Consensus        41 C~~~~l~~lP~~-l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l  117 (610)
                      .....++.++.. +.  .+|++|+|++|.+..+....+.  .+.+|+.+++++|.|+.+++.+|..+.+|++|+|++|+|
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccc--hhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            344556666433 32  5799999999999998888877  688999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc
Q psy10487        118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF  197 (610)
Q Consensus       118 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  197 (610)
                      ..+++..|.++++|+.|++++|.++.+.+..|..+++|+.|++++|++..+.+..|..+.+|+.|+|++|.+.-... ..
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~  244 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-AR  244 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GH
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-ch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999874433 11


Q ss_pred             cCCCcccEEecCCCcccccC
Q psy10487        198 FPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       198 ~~~~~L~~l~l~~N~~~c~c  217 (610)
                      +-...++.+....+.+.|..
T Consensus       245 ~l~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         245 PLWAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             HHHHHHHHCCSEECCCBEEE
T ss_pred             HHHHHHHhCcCCCCceEeCC
Confidence            11223455566667777754

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=3.4e-15  Score=119.34  Aligned_cols=86  Identities=26%  Similarity=0.465  Sum_probs=72.1

Q ss_pred             CCceeeeec-ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKES-MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~-~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.|...+. .+.+.+|+++.|.|.+.|.|.|.|.|+++|..+.....   .        ...+.|.|.+++..|+|.|+
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~---~--------~~~~~L~i~~v~~~d~G~Y~   70 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA---T--------VTDSGLVIKGVKNGDKGYYG   70 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSE---E--------EETTEEEESSCCSTTCEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccE---E--------EeeeeEEECCCChhhCEEEE
Confidence            466776664 45778999999999999999999999999999864421   1        12237999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|..|.....+.|.|
T Consensus        71 C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          71 CRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999999998887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.2e-14  Score=135.08  Aligned_cols=157  Identities=23%  Similarity=0.382  Sum_probs=135.2

Q ss_pred             CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      -+.+++.+.+++++.. ...++|++|+|++|+|+.+.+  +.  ++++|++|++++|.+..+.+  |.+++.|++|++++
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCccc--cc--CCcccccccccccccccccc--cccccccccccccc
Confidence            3679999999998863 224699999999999999875  55  79999999999999988864  88999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      |.+..+.  .+..+++|+.|++++|.+..+.  .+..+++|+.|++.+|+++.+.  .+.++++|+.|++++|++++++ 
T Consensus       116 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~-  188 (199)
T d2omxa2         116 NQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS-  188 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCc-
Confidence            9998765  4888999999999999998775  3788999999999999999884  4789999999999999999875 


Q ss_pred             ccccCCCcccEE
Q psy10487        195 SVFFPTPNLKTL  206 (610)
Q Consensus       195 ~~~~~~~~L~~l  206 (610)
                       .+..+++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             36778888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=4.2e-15  Score=137.38  Aligned_cols=105  Identities=22%  Similarity=0.335  Sum_probs=80.2

Q ss_pred             EEEcccCCCcccchhhhcCCCCCcEEEccCCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCc
Q psy10487         85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC  163 (610)
Q Consensus        85 ~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n  163 (610)
                      .++.++++++.++.+.   ...+++|+|++|+|+. +....|.++++|+.|+|++|.+..+....|..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3444445555554321   1356777777777754 55666777888888888888888888888888889999999999


Q ss_pred             cccccCHHHhhcCcccccccccccccccc
Q psy10487        164 QIHSVHKDALIHLTALESLNLNGNRLKHL  192 (610)
Q Consensus       164 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  192 (610)
                      +|+.+++..|.++++|+.|+|++|+|+.+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i  117 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             cccccCHHHHhCCCcccccccCCcccccc
Confidence            99999999999999999999999998653

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=2.9e-15  Score=120.32  Aligned_cols=85  Identities=26%  Similarity=0.436  Sum_probs=70.7

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+... +..+.+.+|++++|.|.+.|.|.|.|.|++++.......    .        ...+.|.|.+++.+|+|.|+
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----~--------~~~~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----L--------SSEPLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----S--------BSSSEEEECSCCGGGCEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----e--------eeeeEEEeCCCCccCCEEEE
Confidence            5777664 688899999999999999999999999999765432211    1        12348999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|..|.++.++.|.|
T Consensus        72 C~a~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIII   89 (91)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999999999887

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=121.98  Aligned_cols=89  Identities=27%  Similarity=0.471  Sum_probs=75.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      |...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+............      ..+.|.|.+++.+|+|.|+|.|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~   75 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK------YKSTFEISSVQASDEGNYSVVVE   75 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECS------SEEEEECSSCCSCCCEEEEEECB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeec------ceeEEeecCCCHHHCEEEEEEEE
Confidence            345677889999999999999999999999999999888766543333222      23589999999999999999999


Q ss_pred             cCCcceeEEEEEEcC
Q psy10487        343 NIRGNASGEISLDLP  357 (610)
Q Consensus       343 N~~G~~~~~~~L~V~  357 (610)
                      |..|..+.++.|.|.
T Consensus        76 N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          76 NSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CSSCBCCEEEEEECC
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999999999999884

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=4.8e-15  Score=121.39  Aligned_cols=94  Identities=33%  Similarity=0.515  Sum_probs=73.1

Q ss_pred             CCceeeeec--ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKES--MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+...+.  +.++..|++++|.|.+.|.|.|.|.|+++|..+.............    ...+.|.|.+++.+|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y   78 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS----DDSSELTIRNVDKNDEAEY   78 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC----TTSCEEEECSCCGGGCEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEee----cCceEEEeCCCCcccCEEE
Confidence            566665543  4566789999999999999999999999999887554321111100    1125899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEcC
Q psy10487        338 TCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|.|.|..|.++..+.|.|.
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          79 VCIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999999999883

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=130.31  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY  135 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~  135 (610)
                      ++++|+|++|+|+.++ ..+.  .+.+|+.|+|++|.|..+.  .|..+++|++|++++|+|..+++..+..+++|+.|+
T Consensus        19 ~lr~L~L~~n~I~~i~-~~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRGYKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEECTTSCCCSCC-CGGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcEEECCCCCCCccC-cccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            5667777777777765 2333  4666777777777776663  366677777777777777766666666666777777


Q ss_pred             eeCccccccCc-CcCCCCCCccEEEccCccccccCH---HHhhcCccccccc
Q psy10487        136 LNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLN  183 (610)
Q Consensus       136 Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  183 (610)
                      |++|.++.+.. ..+..+++|+.|++++|.+.....   ..+..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77776666543 345566666666666666655531   2345555665554

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=115.42  Aligned_cols=87  Identities=26%  Similarity=0.357  Sum_probs=72.3

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .|.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+......+......    ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ----HWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT----EEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeeccc----CceeeEEECCCCcccCEEEEEEEEECC
Confidence            3678889999999999999999999999999999987665443333332    334689999999999999999999999


Q ss_pred             cce-eEEEEEEc
Q psy10487        346 GNA-SGEISLDL  356 (610)
Q Consensus       346 G~~-~~~~~L~V  356 (610)
                      |.. +..+.|.|
T Consensus        78 G~~~S~~~~l~V   89 (91)
T d1rhfa1          78 ETEISQPVWLTV   89 (91)
T ss_dssp             TCEECCCEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            975 56788877

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=5.3e-14  Score=131.80  Aligned_cols=146  Identities=23%  Similarity=0.358  Sum_probs=128.2

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .+++.|++++|.|+.+..  +.  .+++|++|+|++|.|+.+.+  ++.+++|++|++++|+|+.++  .+.++++|+.|
T Consensus        46 ~~L~~L~l~~~~i~~l~~--l~--~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred             cCccEEECcCCCCCCchh--Hh--hCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--ccccccccccc
Confidence            479999999999998864  44  58899999999999999874  788999999999999999876  48899999999


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      ++++|.+..+..  +.++++|+.+++++|.++...  .+..+++|+.+++++|+++++.+  +..+++|+.|++++|.+.
T Consensus       118 ~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC
Confidence            999999887653  778899999999999998763  46788999999999999998764  778999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=1.3e-14  Score=145.03  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=136.1

Q ss_pred             cEEEcCC-CCCC-ccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487         37 KSALCKD-ANFT-ALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL  112 (610)
Q Consensus        37 ~~~~C~~-~~l~-~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL  112 (610)
                      +.++..+ ++++ ++|..+.  .+|++|+|++|+|..+.+..+.  .+.+|++|++.+|.+....+..|..++.|+++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~--~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccc--chhhhcccccccccccccCchhhccCcccceeec
Confidence            4466654 5666 7888775  4999999999999998888777  6788899999888887777778888888888888


Q ss_pred             cCCCCCCCCccccc------------------------------------------------CCCCCcEEEeeCcccccc
Q psy10487        113 SDNQIAWLHQDTFL------------------------------------------------GNDRLKVLYLNGNPITEL  144 (610)
Q Consensus       113 s~n~l~~l~~~~f~------------------------------------------------~l~~L~~L~Ls~N~l~~l  144 (610)
                      ++|++....+..+.                                                .+.+|+.|++++|.+...
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88877643333332                                                334455555555555444


Q ss_pred             CcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC
Q psy10487        145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH  218 (610)
Q Consensus       145 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  218 (610)
                      .+ .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+. +..+.+|+.+++.+|+..|...
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            33 467789999999999999976678899999999999999999954332 4678899999999999777543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-14  Score=112.13  Aligned_cols=81  Identities=23%  Similarity=0.382  Sum_probs=68.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.|...|.+..+.+|+++.|.|.+.|.|.| +|.|+|||..+.....               +.+.|.....+|+|.|+|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------------~~~~l~~~~~~d~G~Y~C   66 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------------SPSVLNVTGVTQSTMFSC   66 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------------SSEEEEECCCSSCEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------------cceEEecCCccccEEEEE
Confidence            778888999999999999999999999998 8999999998865431               245667777889999999


Q ss_pred             EeecCCcce-eEEEEEEc
Q psy10487        340 YAENIRGNA-SGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~-~~~~~L~V  356 (610)
                      +|.|.+|.. +..++|.|
T Consensus        67 ~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          67 EAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEEcCCCcEEEEEEEEEE
Confidence            999999965 45787776

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=116.69  Aligned_cols=82  Identities=28%  Similarity=0.403  Sum_probs=68.4

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS  349 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  349 (610)
                      ..+.+|+++.|.|.+.|+|.|.|.|++||..+............     ...+.|.|.+++.+|+|.|+|.|.|..|.++
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEc-----CCcEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            46788999999999999999999999999998765543222111     1124899999999999999999999999999


Q ss_pred             EEEEEEc
Q psy10487        350 GEISLDL  356 (610)
Q Consensus       350 ~~~~L~V  356 (610)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=130.08  Aligned_cols=126  Identities=25%  Similarity=0.315  Sum_probs=95.9

Q ss_pred             CCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEE
Q psy10487         79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI  158 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  158 (610)
                      +..+|+.|+|++|+|+.++ ..+..+..|+.|||++|+|+.++  .|..+++|++|+|++|.++.+.+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4567888888888888885 45677788888888888888774  37778888888888888888877666777888888


Q ss_pred             EccCccccccCH-HHhhcCccccccccccccccccCc---ccccCCCcccEEe
Q psy10487        159 ELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSE---SVFFPTPNLKTLS  207 (610)
Q Consensus       159 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~  207 (610)
                      +|++|+|..+.. ..+..+++|+.|++++|.++..+.   ..+..+++|+.|+
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888877643 456777888888888888876653   3456677777665

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.9e-15  Score=119.26  Aligned_cols=89  Identities=24%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~  338 (610)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.|.|++++..+........        ....+.|.|.+++.+|.| .|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~--------~~~~~~L~i~~~~~~d~G~~Y~   73 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSG--------GLPSLGLTLANVTSDLNRKNVT   73 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCC--------CSSEEEEEEESCCSTTTTCCEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeee--------eccceeEEEccccccccceEEE
Confidence            58888889999999999999999999999999999999877654322111        123358999999999999 699


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |+|.|.+|.+..++.|.|
T Consensus        74 C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          74 CWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             ECCEETTEECCEEECCCC
T ss_pred             EEEEcCCCEEEEEEEEEE
Confidence            999999999999988876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.3e-13  Score=130.78  Aligned_cols=163  Identities=23%  Similarity=0.383  Sum_probs=108.6

Q ss_pred             cEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487         37 KSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD  114 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~  114 (610)
                      +.+++.+.++++++ .+  .++|++|+|++|.|..+.+  |.  ++++|++|.+.+|.++.+.  .|.+++.|+.+++++
T Consensus        44 ~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~--~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             CEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cc--ccccccccccccccccccc--ccccccccccccccc
Confidence            56778888888775 33  4588888888888887764  44  6788888888888887764  477888888888888


Q ss_pred             CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487        115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                      +.+..+..  +.....+..+.++++.+.....  +..+++|+.|++++|.+..+.  .+.++++|+.|+|++|++++++.
T Consensus       117 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccch--hhcccccceecccCCCccCCChh
Confidence            77665432  4445555556655555544332  445566666666666665542  25566666666776666666543


Q ss_pred             ccccCCCcccEEecCCCccc
Q psy10487        195 SVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       195 ~~~~~~~~L~~l~l~~N~~~  214 (610)
                        +..+++|+.|++++|+++
T Consensus       191 --l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         191 --LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             --GGGCTTCCEEECTTSCCC
T ss_pred             --hcCCCCCCEEECcCCcCC
Confidence              555666666666666554

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=3.9e-14  Score=115.05  Aligned_cols=87  Identities=17%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+.............    ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~   84 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNR----TSGKRLLFKTTLPEDEGVYTCEVDNGV   84 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSS----STTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeee----cCCCEEEEEeccccccEEEEEEEEECC
Confidence            3578889999999999999999999999999999987654433322222    123489999999999999999999999


Q ss_pred             ccee-EEEEEEc
Q psy10487        346 GNAS-GEISLDL  356 (610)
Q Consensus       346 G~~~-~~~~L~V  356 (610)
                      |... .++.|.|
T Consensus        85 G~~~s~s~~L~V   96 (97)
T d1biha3          85 GKPQKHSLKLTV   96 (97)
T ss_dssp             SSCEEEEEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            9864 5788876

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=3.7e-14  Score=113.99  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=73.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      +.|...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+............+       +.|.|.+++.+|+|.|+|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~   74 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-------NYLQIRGIKKTDEGTYRCE   74 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-------SCEEETTCCGGGCEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-------eeEEECCCCHHhCEEEEEE
Confidence            456677889999999999999999999999999999999887766543333222       3799999999999999999


Q ss_pred             eecCCcceeEEEEEEc
Q psy10487        341 AENIRGNASGEISLDL  356 (610)
Q Consensus       341 a~N~~G~~~~~~~L~V  356 (610)
                      |.|..|.......+.|
T Consensus        75 a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          75 GRILARGEINFKDIQV   90 (92)
T ss_dssp             EEEGGGTEEEEEEEEE
T ss_pred             EEECcCCEEEEEEEEE
Confidence            9999887766666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=6.9e-14  Score=119.01  Aligned_cols=103  Identities=22%  Similarity=0.297  Sum_probs=61.6

Q ss_pred             cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487         58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN  137 (610)
Q Consensus        58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls  137 (610)
                      |+|+|++|+|+.++.  +.  .+.+|++|++++|.|+.+++ .|..+++|++|++++|+|+.++  .|..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l~~--l~--~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCcc--cc--cCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECC
Confidence            456667776666642  33  45566666666666666643 4566666666666666666653  25666666666666


Q ss_pred             CccccccCc-CcCCCCCCccEEEccCccccc
Q psy10487        138 GNPITELRA-GQFPKLPYLKTIELQHCQIHS  167 (610)
Q Consensus       138 ~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~  167 (610)
                      +|.++.+.. ..+..+++|+.|++++|.+..
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            666665543 344555666666666665543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=6.4e-14  Score=111.82  Aligned_cols=85  Identities=25%  Similarity=0.337  Sum_probs=69.7

Q ss_pred             Cceee-eecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTI-KESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~-~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.+.+ .+....+.+|+++.|.|.+. |.|.|.+.|+|++..+.....           ....+.|+|.+++.+|+|.|+
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~   70 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----------MDFNGILTIRNVQPSDAGTYV   70 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE-----------EEETTEEEECSCCGGGCEEEE
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc-----------EeeceEEEEecCCcccCEEEE
Confidence            34444 35677889999999999997 678999999998876654331           123458999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..|.++.+++|.|
T Consensus        71 C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          71 CTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=8.9e-14  Score=118.30  Aligned_cols=118  Identities=21%  Similarity=0.318  Sum_probs=95.0

Q ss_pred             cEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCc
Q psy10487         84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC  163 (610)
Q Consensus        84 ~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n  163 (610)
                      |.|+|++|+|+.+..  |..+..|++||+++|+|+.+++ .|..+++|+.|++++|.++.++.  +..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            578999999998863  7889999999999999998864 58889999999999999998853  788899999999999


Q ss_pred             cccccCH-HHhhcCccccccccccccccccC---cccccCCCcccEE
Q psy10487        164 QIHSVHK-DALIHLTALESLNLNGNRLKHLS---ESVFFPTPNLKTL  206 (610)
Q Consensus       164 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~L~~l  206 (610)
                      +|..+.. ..+..+++|+.|++++|.+...+   ......+++|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9988753 56778888999999999887654   2333445566544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.3e-13  Score=139.35  Aligned_cols=164  Identities=24%  Similarity=0.338  Sum_probs=107.6

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      ..+++.++.++.++. ....+++.|++++|.++.++  .+.  .+++|+.|++.+|.+..+.+  |..+++|++|++++|
T Consensus       200 ~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             ceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhh--cccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            456777777776643 34567888888888888764  344  57788888888888877754  777888888888888


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      ++..+.+  +.++..++.+.++.|.++.+..  +..+++++.|++++|+|+.+.  .+..+++|+.|++++|+|+.++  
T Consensus       274 ~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--  345 (384)
T d2omza2         274 QISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--  345 (384)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--
T ss_pred             ccCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--
Confidence            8776643  5556666666666666655432  445566666666666666553  2555666666666666666553  


Q ss_pred             cccCCCcccEEecCCCccc
Q psy10487        196 VFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N~~~  214 (610)
                      .+..+++|+.|++++|++.
T Consensus       346 ~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         346 SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCC
T ss_pred             hHcCCCCCCEEECCCCcCC
Confidence            2455666666666666554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=113.65  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecC---CCeEEEEeCCEEeccCCc-cceeecc--CCceeeeeeEEEEEecCCCCC
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSF-DLLEEEE--GDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~g~~l~~~~~-~~~~~~~--~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.|...|.++.+.+|++++|.|.+.|.|   .|.|.|++++........ .......  ........+.|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4567778889999999999999999999   689999998754332221 1111110  000113456899999999999


Q ss_pred             eEEEEEeecCCcceeEEEEEEcCc
Q psy10487        335 GEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      |.|+|.|.|..|.+++++.|.|.+
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999954

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.3e-14  Score=111.44  Aligned_cols=73  Identities=11%  Similarity=0.082  Sum_probs=63.8

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      +..+.+|++++|.|.+.|.|.|.|.|++++..+....                ..|+|.+++.+|+|.|+|.|.|..|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~----------------~~l~i~~v~~~DsG~Y~C~a~N~~g~~   71 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----------------KTLSVSQLELQDSGTWTCTVLQNQKKV   71 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES----------------SEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceeee----------------eeeeeeecccccccEEEEEEEeCCCEE
Confidence            4568899999999999999999999999776543322                379999999999999999999999999


Q ss_pred             eEEEEEEcC
Q psy10487        349 SGEISLDLP  357 (610)
Q Consensus       349 ~~~~~L~V~  357 (610)
                      ...+.|.|.
T Consensus        72 ~~~~~v~V~   80 (84)
T d2nxyb2          72 EFKIDIVVL   80 (84)
T ss_dssp             EEEEEECEE
T ss_pred             EEEEEEEEE
Confidence            999998884

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.45  E-value=7.6e-14  Score=115.98  Aligned_cols=97  Identities=27%  Similarity=0.376  Sum_probs=69.9

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC----CccceeeccC---CceeeeeeEEEEEecCC
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS----SFDLLEEEEG---DALFEKSVSITLFNVTD  331 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~----~~~~~~~~~~---~~~~~~~~~L~I~~v~~  331 (610)
                      +|.+... |.++++.+|++++|.|.+.|.|.|.|.|++++......    ..........   .......+.|.|.+++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4666554 68899999999999999999999999999976543221    1100000000   00012346899999999


Q ss_pred             CCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        332 LDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|+|.|+|+|.|..|.+.+++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999999987

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=4e-14  Score=115.05  Aligned_cols=89  Identities=29%  Similarity=0.413  Sum_probs=72.0

Q ss_pred             CCceeeeecceEeecC---ceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAG---GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G---~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.|...|.++.+.+|   ++++|.|.+.|.|.|.+.|++||..+............+       ..|.|..++.+|+|.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-------~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-------DLVISNPVKAKDAGS   76 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-------EEEEESCCHHHHCEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-------eEEEEecccccCCEE
Confidence            5788888888887766   789999999999999999999999987665433333222       368888899999999


Q ss_pred             EEEEeecCCcce-eEEEEEE
Q psy10487        337 YTCYAENIRGNA-SGEISLD  355 (610)
Q Consensus       337 Y~C~a~N~~G~~-~~~~~L~  355 (610)
                      |+|+|.|.+|.+ +.++.|.
T Consensus        77 Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          77 YQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEe
Confidence            999999999986 4467764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=111.71  Aligned_cols=85  Identities=26%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      .+....+.|.+.|.|.|++.|++||..+..............  ....+.|.|.+++.+|+|.|+|+|.|..|.+++++.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG--EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN   93 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS--SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeec--ccceEEEEEeecccccceEEEEEEEcCCCEEEEEEE
Confidence            344567888999999999999999999877655333222221  134568999999999999999999999999999999


Q ss_pred             EEcCccc
Q psy10487        354 LDLPEIN  360 (610)
Q Consensus       354 L~V~~~~  360 (610)
                      |.|.+.+
T Consensus        94 v~V~~~P  100 (105)
T d1wwca_          94 GHFLKEP  100 (105)
T ss_dssp             ECCSCCC
T ss_pred             EEEEeCC
Confidence            9986543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=113.23  Aligned_cols=93  Identities=18%  Similarity=0.304  Sum_probs=71.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEecc----CCccceeeccCCceeeeeeEEEEEecC-CCC
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHN----SSFDLLEEEEGDALFEKSVSITLFNVT-DLD  333 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~----~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  333 (610)
                      ||.|...+....+.+|+.++|.|.+.|.|.| .+.|++++.....    ...........    .....|.|.+++ ..|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~~D   77 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS----QGRSELHIENLNMEAD   77 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE----TTEEEEEECSCCTTTS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC----CCEEEEEEeccccccC
Confidence            7888888889999999999999999999988 6999997543221    11111111111    123589999998 579


Q ss_pred             CeEEEEEeecCCcceeEEEEEEc
Q psy10487        334 AGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       334 ~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|+|.|.|..|.++..+.|.|
T Consensus        78 ~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          78 PGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999987

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.8e-14  Score=110.97  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             ecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        267 ESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +....+.+|+++.|.|.+. |.|.|+++|++++..+....     .      ....+.|+|.+++.+|+|.|+|+|.|..
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~-----~------~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ-----S------DTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEE-----E------ESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeee-----c------cCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            3557788999999999985 89999999998765542111     1      1223689999999999999999999999


Q ss_pred             cceeEEEEEEc
Q psy10487        346 GNASGEISLDL  356 (610)
Q Consensus       346 G~~~~~~~L~V  356 (610)
                      |..+.+++|.|
T Consensus        79 g~~~~s~~l~V   89 (90)
T d1gsma1          79 RTFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            99999999887

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=109.60  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             eeeec-ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        264 TIKES-MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       264 ~~~~~-~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      .+.|. .+.+.+|+++.|.|.+.|.|.|.+.|++++..+.....   ..      ....+.|.|.+++.+|+|.|+|+|.
T Consensus         4 ~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~~------~~~~~~L~I~~v~~~d~G~Y~C~a~   74 (90)
T d1vcaa2           4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV---TN------EGTTSTLTMNPVSFGNEHSYLCTAT   74 (90)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEE---EE------ETTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             EEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeee---ee------ecCCcEEEEecccccccceEEEEEE
Confidence            34443 45567899999999999999999999998765543221   11      1224589999999999999999999


Q ss_pred             cCCcceeEEEEEEc
Q psy10487        343 NIRGNASGEISLDL  356 (610)
Q Consensus       343 N~~G~~~~~~~L~V  356 (610)
                      |..|..+.+++|.|
T Consensus        75 N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          75 CESRKLEKGIQVEI   88 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEE
Confidence            99999999999987

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-14  Score=114.35  Aligned_cols=72  Identities=21%  Similarity=0.318  Sum_probs=62.5

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      +..+++.+|+.+.|.|.+.|+|.|+++|+|++..+...                   +.+.+++.+|+|.|+|+|.|.+|
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------------------~~~~~v~~~d~G~Y~C~A~N~~G   71 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------------GESVTVTRDLEGTYLCRARSTQG   71 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------------TSCEECCGGGCEEEEEEEEETTE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------------------eeeeccccCCCCEEEEEEEcCCC
Confidence            46788999999999999999999999999998765432                   23456888999999999999999


Q ss_pred             ceeEEEEEEcC
Q psy10487        347 NASGEISLDLP  357 (610)
Q Consensus       347 ~~~~~~~L~V~  357 (610)
                      .++..+.|.|.
T Consensus        72 ~~~~~~~l~V~   82 (84)
T d2oz4a3          72 EVTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99999999883

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.5e-13  Score=110.51  Aligned_cols=84  Identities=25%  Similarity=0.395  Sum_probs=68.1

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      .+....+.|.+.|+|.|+|.|+++|..+..+.+......... .....+.|+|.+++..|+|.|+|.|+|.+|.+++++.
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN-HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccc-cccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            567788999999999999999999999987665433322111 1134568999999999999999999999999999999


Q ss_pred             EEcCc
Q psy10487        354 LDLPE  358 (610)
Q Consensus       354 L~V~~  358 (610)
                      |.|..
T Consensus        94 v~V~~   98 (103)
T d1wwbx_          94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEEEe
Confidence            98843

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=8.8e-14  Score=112.24  Aligned_cols=89  Identities=20%  Similarity=0.366  Sum_probs=71.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      .|.|...+.++.+.+|+.++|.|.+.|.|.| .+.|++||..+............       .++|.|.+++.+|+|.|+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~-------~~~L~i~~v~~~D~G~Y~   74 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD-------EGSLVFLRPQASDEGHYQ   74 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTT-------SCCEEESSCCGGGCEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeeccc-------ceEEEEeccChhcCeEEE
Confidence            3777788889999999999999999999977 69999999988765543322222       248999999999999999


Q ss_pred             EEeecCCccee-EEEEEE
Q psy10487        339 CYAENIRGNAS-GEISLD  355 (610)
Q Consensus       339 C~a~N~~G~~~-~~~~L~  355 (610)
                      |.|.|.+|.+. ..+.|.
T Consensus        75 C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          75 CFAETPAGVASSRVISFR   92 (94)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEeCCCEEEEEEEEEE
Confidence            99999999864 344443

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.1e-13  Score=109.67  Aligned_cols=91  Identities=24%  Similarity=0.382  Sum_probs=69.2

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCC-CeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      .+.+.|....+.+|+++.|.|.+.|.|+ |.|.|++ ++..+.............    ...+.|.|.+++.+|+|.|+|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec----CcceEEEcccCchhhceEEEE
Confidence            3566788889999999999999999985 7999999 555554433222211111    123589999999999999999


Q ss_pred             EeecCCcce-eEEEEEEc
Q psy10487        340 YAENIRGNA-SGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~-~~~~~L~V  356 (610)
                      .|.|..|.. ++++.|.|
T Consensus        78 ~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EEEETTTEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEE
Confidence            999999975 56788776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.8e-13  Score=128.70  Aligned_cols=172  Identities=16%  Similarity=0.219  Sum_probs=136.8

Q ss_pred             CcEEEcCCCCCCccCcc-c--CCCccEEEeecCCCCC-CChhhhcccCCCCccEEEccc-CCCcccchhhhcCCCCCcEE
Q psy10487         36 KKSALCKDANFTALPST-L--DSDIQVLDLNNNKISY-LTKEAFKSIGLLNLQRIYLKN-SGIREVHRDTFKYLTILVEV  110 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~-l--~~~L~~L~L~~n~i~~-l~~~~~~~~~l~~L~~L~L~~-n~l~~i~~~~f~~l~~L~~L  110 (610)
                      .+.++..++.++.+|.. +  ..+|++|+|++|.+.. ++...|.  ++.++++|.+.. |++..+.+..|.++++|++|
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~--~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE--SCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc--ccccccccccccccccccccccccccccccccc
Confidence            46788999999999874 3  3589999999998865 5677787  788999988764 67888888889999999999


Q ss_pred             EccCCCCCCCCc-------------------------ccccCC-CCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487        111 DLSDNQIAWLHQ-------------------------DTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ  164 (610)
Q Consensus       111 dLs~n~l~~l~~-------------------------~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~  164 (610)
                      ++++|++.....                         ..|.++ ..++.|++++|.++.+....|.....++.+.+++|+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            999988765432                         233333 367788899999998888766544334445678889


Q ss_pred             ccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecC
Q psy10487        165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD  209 (610)
Q Consensus       165 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  209 (610)
                      |+.++...|.++++|+.|+|++|+|+.++...|..+.+|+.+++.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            999988889999999999999999999998888888887766654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=113.61  Aligned_cols=97  Identities=20%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             eeeeecceEeecCceEEEEEEEEecC---CCeEEEEeCCEEeccCCc-c--ceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSF-D--LLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~g~~l~~~~~-~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      |...|.++.+.+|++++|.|.+.|.|   .|.|.|+|++........ .  ................|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            34467788999999999999999999   689999998754322111 1  11000000011334579999999999999


Q ss_pred             EEEEeecCCcceeEEEEEEcCcc
Q psy10487        337 YTCYAENIRGNASGEISLDLPEI  359 (610)
Q Consensus       337 Y~C~a~N~~G~~~~~~~L~V~~~  359 (610)
                      |+|.|.|..|..++++.|.|.+.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcC
Confidence            99999999999999999999543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.1e-13  Score=109.58  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=73.6

Q ss_pred             Cceeeee-cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceee------ccCCceeeeeeEEEEEecCCCC
Q psy10487        261 PNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE------EEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       261 P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~------~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      |.+.... ..+.+.+|++++|.|.+.|.|.|.|.|+++|..+..........      ..........+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            5555544 34567889999999999999999999999999887654322111      1111222445789999999999


Q ss_pred             Ce-EEEEEeecCCcceeEEEEEEc
Q psy10487        334 AG-EYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       334 ~G-~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                      .| .|+|.|.|.+|.+++.+.|..
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~~  105 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLIY  105 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEEC
Confidence            99 599999999999999998875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=1.1e-12  Score=124.28  Aligned_cols=146  Identities=25%  Similarity=0.349  Sum_probs=126.2

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .+|+.|++.+|.|+.+.  .+.  .+++|++|+|++|.+..+.+  |.++.+|++|++++|.++.+.  .|.++++|+.+
T Consensus        41 ~~L~~L~l~~~~i~~l~--~l~--~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE--GVQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred             CCcCEEECCCCCCCcch--hHh--cCCCCcEeecCCceeecccc--ccccccccccccccccccccc--ccccccccccc
Confidence            58999999999999985  355  69999999999999998865  899999999999999999875  48899999999


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .++++....+..  +...+.++.+.++.+.+....  .+....+|+.|++++|.+.....  +..+++|+.|++++|.+.
T Consensus       113 ~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcccccceecccCCCccC
Confidence            999998877654  667789999999999887663  36778899999999999876654  778999999999999875

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-13  Score=116.61  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=69.9

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce-------------------eec-cCCce---eeeee
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL-------------------EEE-EGDAL---FEKSV  322 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~-------------------~~~-~~~~~---~~~~~  322 (610)
                      .+..+.+.+|+.++|.|.+.|.|.|.|.|++++..+........                   ... .+...   .....
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            35678899999999999999999999999998876654321000                   000 00001   01235


Q ss_pred             EEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       323 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      .|.|.+++.+|+|.|+|.|.|.+|.+++++.|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            79999999999999999999999999999999884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=1.7e-12  Score=132.73  Aligned_cols=161  Identities=22%  Similarity=0.320  Sum_probs=95.9

Q ss_pred             cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487         37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN  115 (610)
Q Consensus        37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n  115 (610)
                      +.+++.++.++.++. ....+++.|++++|.++.+.+  +.  ++++|++|+++++.+..+.+  +..+..++.++++.|
T Consensus       222 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n  295 (384)
T d2omza2         222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  295 (384)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CEEECCCCCCCCcchhhcccccchhccccCccCCCCc--cc--ccccCCEeeccCcccCCCCc--ccccccccccccccc
Confidence            445666666666542 112456666666666665543  33  45666666666666665543  556666666666666


Q ss_pred             CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487        116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES  195 (610)
Q Consensus       116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  195 (610)
                      ++..+.  .+..+.+++.|+|++|+++.+.+  +..+++|+.|+|++|+|+.+.  .+.++++|+.|++++|+|+++.+ 
T Consensus       296 ~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         296 QLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             CCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh-
Confidence            666543  25556666666666666666543  555666666666666666553  35566666666666666666543 


Q ss_pred             cccCCCcccEEecCCC
Q psy10487        196 VFFPTPNLKTLSLDGN  211 (610)
Q Consensus       196 ~~~~~~~L~~l~l~~N  211 (610)
                       +..+++|+.|++++|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             555666666666655

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-13  Score=111.42  Aligned_cols=92  Identities=17%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             eeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCc-cce-eeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSF-DLL-EEEEGDALFEKSVSITLFNVTDLDAGEYTCY  340 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~-~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  340 (610)
                      ...++...+.+|+++.|.|.+.|.| .|.|+|+|++..+..... ... ......   .....|.|.+++.+|+|.|+|.
T Consensus         7 i~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           7 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN---ISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             CCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSS---CEEEEEEESSCCGGGCEEEEEE
T ss_pred             EecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCC---ceEEEEEEccccHHHCCeEEEE
Confidence            3456777899999999999999999 489999998766543222 111 111111   2234799999999999999999


Q ss_pred             eecCCccee-EEEEEEcCc
Q psy10487        341 AENIRGNAS-GEISLDLPE  358 (610)
Q Consensus       341 a~N~~G~~~-~~~~L~V~~  358 (610)
                      |.|..|... .++.|.|.+
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            999999864 578888854

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.4e-13  Score=109.38  Aligned_cols=91  Identities=29%  Similarity=0.380  Sum_probs=68.8

Q ss_pred             ceEeecCceE---EEEEEEEecCCCeEEEEeCCEEeccCCccceeecc-CCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        269 MVIREAGGNV---TMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE-GDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       269 ~~~v~~G~~v---~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+.+.+|...   .+.|.+.|+|.|.+.|++||..+............ ........+.|.|.++..+|+|.|+|+|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            3444444444   45668999999999999999999876654333222 2222345578999999999999999999999


Q ss_pred             CcceeEEEEEEcCcc
Q psy10487        345 RGNASGEISLDLPEI  359 (610)
Q Consensus       345 ~G~~~~~~~L~V~~~  359 (610)
                      +|.+++++.|.|.+.
T Consensus        86 ~G~~~~~i~v~v~~~  100 (107)
T d1he7a_          86 FGQASASIMAAFMDN  100 (107)
T ss_dssp             TEEEEEEEEECCCSC
T ss_pred             CCEEEEEEEEEEEcC
Confidence            999999999988543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-13  Score=112.54  Aligned_cols=96  Identities=25%  Similarity=0.323  Sum_probs=71.8

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+.......  ......+......+.|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            445556677889999999999999999999999999765544322211  111111112233468999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..|.+...+.|.|
T Consensus        85 C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEETTSSCEECCEEEC
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            999999999988877776

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.4e-14  Score=114.68  Aligned_cols=97  Identities=19%  Similarity=0.325  Sum_probs=71.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCC-ceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGD-ALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+........+.+|++++|.|.+ .|+|.|.+.|++++..+.............. ......+.|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4555444455678899999999998 5899999999999998876554332222211 1112346899999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      +|+|.|..|.+..++.++|
T Consensus        82 ~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEECSSSCCEECCCBCC
T ss_pred             EEEEEECCCceEEEEEEEE
Confidence            9999999999877655544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.7e-12  Score=106.20  Aligned_cols=96  Identities=25%  Similarity=0.348  Sum_probs=70.9

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.+...+..+.+.+|++++|.|.+.|.|.|.|.|++++........  ........+......++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            5667777888999999999999999999999999985443222111  11111111222234468999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..|.....+.+.|
T Consensus        82 C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEEEETTSSSEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            999999999887776665

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=8.1e-13  Score=109.83  Aligned_cols=99  Identities=23%  Similarity=0.339  Sum_probs=68.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCc--eeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDA--LFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~  336 (610)
                      ||.+........+.+|++++|.|.+. |.|.|.+.|++++..+...............  .....+.|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            34444434445678999999999985 8999999999999988655432221111110  11223589999999999999


Q ss_pred             EEEEeecCCcceeE--EEEEEcCc
Q psy10487        337 YTCYAENIRGNASG--EISLDLPE  358 (610)
Q Consensus       337 Y~C~a~N~~G~~~~--~~~L~V~~  358 (610)
                      |+|.|.|.+|.+..  .+.|.|.+
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEEECCCcEEEEEEEEEEEEe
Confidence            99999999998754  56666643

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=105.92  Aligned_cols=90  Identities=20%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.|. .+.++.+.+|++++|.|.+.|.|.|.+.|++  ++.......... .....    ...++|.|.++..+|+|.|+
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~L~I~~v~~~D~G~Y~   76 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-VTSSR----RFIASFNVVNTTKRDAGKYR   76 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE-EEETT----EEEEEEEECSCCGGGCSEEE
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee-EEEee----cCceEEEECCCCHHHCeEEE
Confidence            6665 5788999999999999999999998765443  222222111111 11111    23468999999999999999


Q ss_pred             EEeecCCccee-EEEEEEc
Q psy10487        339 CYAENIRGNAS-GEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~-~~~~L~V  356 (610)
                      |+|.|..|.+. ..+.|.|
T Consensus        77 C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          77 CMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            99999999864 4578877

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.7e-12  Score=104.96  Aligned_cols=82  Identities=24%  Similarity=0.338  Sum_probs=67.0

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+..+.+|++++|.|.+.| |.+.+.|+++|..+............        +.|.|.+++.+|+|.|+|.|.|..|
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--------~~L~I~~v~~~d~G~Y~C~a~N~~g   80 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--------SILRIDPIKREDAGEYQCEISNPVS   80 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--------TEEEECSCCGGGCEEEEEEEESSSC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--------eEEEEeccchhhceEEEEEEEeCCC
Confidence            46677899999999999876 66899999999998776554332222        3899999999999999999999999


Q ss_pred             cee-EEEEEEcC
Q psy10487        347 NAS-GEISLDLP  357 (610)
Q Consensus       347 ~~~-~~~~L~V~  357 (610)
                      ... ..+.|.|.
T Consensus        81 ~~~S~~~~L~V~   92 (96)
T d1l6za2          81 VRRSNSIKLDII   92 (96)
T ss_dssp             CEECCCCEEEEC
T ss_pred             CeEEEeEEEEEE
Confidence            874 57888884

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.2e-12  Score=100.61  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=64.0

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ...+.++.+.+|++++|.|.+ +.|.|.+.|++++..+.............+    ....|.|.+++.+|+|.|+|+|.|
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEG----KKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEET----TEEEEEEEEECTTTCSEEEEEETT
T ss_pred             EcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeC----CccEEEECccccccCEEEEEEEec
Confidence            345678899999999999998 569999999999998876654332221111    124799999999999999999977


Q ss_pred             CCcceeEEEEEEc
Q psy10487        344 IRGNASGEISLDL  356 (610)
Q Consensus       344 ~~G~~~~~~~L~V  356 (610)
                      .    ..++.|.|
T Consensus        79 ~----~~~a~l~V   87 (90)
T d1x44a1          79 G----QSSAKLSV   87 (90)
T ss_dssp             E----EEEEEEEE
T ss_pred             c----eEEEEEEE
Confidence            4    45566666

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=101.96  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=62.9

Q ss_pred             eecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+....+.+|++++|.|.+.+. |.+.+.|+|||..+.....              .+.|.|.+++.+|+|.|+|.|.|.
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~--------------~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS--------------DPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS--------------CCEEEETTCCGGGCEEEEEEEEET
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc--------------ccccccCccCHHHCCeEEEEEEeC
Confidence            3445568899999999999755 6678999999988754321              237999999999999999999999


Q ss_pred             Ccce-eEEEEEEcC
Q psy10487        345 RGNA-SGEISLDLP  357 (610)
Q Consensus       345 ~G~~-~~~~~L~V~  357 (610)
                      .|.. +..+.|.|.
T Consensus        72 ~g~~~S~~v~l~V~   85 (88)
T d2fcba2          72 YTLYSSKPVTITVQ   85 (88)
T ss_dssp             TEEEECCCEEEEEC
T ss_pred             CCCEEeeeEEEEEe
Confidence            9975 457888884

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=104.28  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ....+.+|+++.|.|.+.| |.|.+.|+++|..+...........+        +.|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~--------~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGR--------KNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTT--------TCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeeccee--------eEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            4567899999999999999 77899999999988765543333322        37999999999999999999999997


Q ss_pred             eeEEEEEEc
Q psy10487        348 ASGEISLDL  356 (610)
Q Consensus       348 ~~~~~~L~V  356 (610)
                      .+....+.+
T Consensus        76 ~~~~~~l~~   84 (92)
T d1olza1          76 KTVFQVVAK   84 (92)
T ss_dssp             SEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            765554433

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.27  E-value=3.4e-12  Score=101.32  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             eeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ...+....+.+|++++|.|.+.+ .|.+.+.|+|||..+....              ..+.|.|.+++.+|+|.|+|+|.
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--------------~~~~l~I~~v~~~dsG~Y~C~a~   71 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------------HNSDFHIPKATLKDSGSYFCRGL   71 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--------------ECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--------------cccccEECccceeccceEEEEEE
Confidence            34455566889999999999975 5667899999998765322              22479999999999999999999


Q ss_pred             cCCcce-eEEEEEEcCc
Q psy10487        343 NIRGNA-SGEISLDLPE  358 (610)
Q Consensus       343 N~~G~~-~~~~~L~V~~  358 (610)
                      |..|.. +..+.|.|.+
T Consensus        72 n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          72 VGSKNVSSETVNITITQ   88 (89)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             eCCCCeEEeeEEEEEEe
Confidence            999875 4578888753

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.25  E-value=1.4e-12  Score=107.34  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=63.2

Q ss_pred             cceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487        268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  346 (610)
                      ..+.+.+|+.+.|.|.+ .|.|.|.|.|+|+|..+............      ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ------TTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT------TTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec------CCCEEeecccccccCcEEEEEEEECCC
Confidence            55789999999999998 79999999999998776543322222211      124899999999999999999999999


Q ss_pred             ceeEEEE
Q psy10487        347 NASGEIS  353 (610)
Q Consensus       347 ~~~~~~~  353 (610)
                      ....++.
T Consensus        86 ~~~~~v~   92 (105)
T d1cs6a2          86 FITKSVF   92 (105)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            8776643

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.3e-12  Score=99.97  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             Cceeeee-cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.|.... ....+.+|+.+.|.|.+ +.|.|.+.|++||..+..+.........+.     ...|.|.+++.+|+|.|+|
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~c   79 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAAYQC   79 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETT-----EEEEEECSCSSSSCEEEEE
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeeccCC-----eEEeecCCCCceecEEEEE
Confidence            4444443 34578899999999998 459999999999999876543333322221     2489999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      +|.|.    ..++.|.|
T Consensus        80 ~a~n~----~~s~~l~V   92 (94)
T d1pd6a_          80 VVGGE----KCSTELFV   92 (94)
T ss_dssp             EETTE----EECCEEEE
T ss_pred             EEeeE----EEEEEEEE
Confidence            99774    44556665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=7.9e-14  Score=129.08  Aligned_cols=128  Identities=23%  Similarity=0.300  Sum_probs=72.9

Q ss_pred             CccEEEeecC--CCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487         56 DIQVLDLNNN--KISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV  133 (610)
Q Consensus        56 ~L~~L~L~~n--~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~  133 (610)
                      .++.+++.++  .++.++ ..+.  .|.+|++|+|++|+|..+.  .|.++++|++|+|++|+|..++. .+..+.+|+.
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~--~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHH--HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCE
T ss_pred             ccceeeeecccCchhhhh-hHHh--cccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccc
Confidence            3444555443  233333 2333  4666666676666666663  26666666666666666666542 2333445666


Q ss_pred             EEeeCccccccCcCcCCCCCCccEEEccCccccccCH-HHhhcCccccccccccccccc
Q psy10487        134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESLNLNGNRLKH  191 (610)
Q Consensus       134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  191 (610)
                      |++++|.++.+..  +..+++|+.|+|++|+|+.+.. ..+..+++|+.|+|++|.+..
T Consensus        98 L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            6666666665532  4555666666666666665532 345566666666666666543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.9e-12  Score=102.57  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...+..+.+.+|++++|.|.+.|.|+ ++|+|+|++..+....+.  ..       ..+++|.|.+++.+|+|.|+
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~--~~-------~~~~~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR--WA-------GMGRRLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEE--EE-------EESSEEEECSCCGGGCEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeE--Ee-------cCCCEEEECCCChhcCEEEE
Confidence            578888888899999999999999998775 589999999887654321  11       22348999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..+.   ++.|.|
T Consensus        77 C~a~n~~~~---t~~l~V   91 (93)
T d1n26a1          77 CYRAGRPAG---TVHLLV   91 (93)
T ss_dssp             EESSSSCSC---EEEEEE
T ss_pred             EEECCcccc---EEEEEE
Confidence            999876433   444444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.4e-13  Score=110.69  Aligned_cols=100  Identities=20%  Similarity=0.271  Sum_probs=74.5

Q ss_pred             cCCCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC-Ce
Q psy10487        258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD-AG  335 (610)
Q Consensus       258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D-~G  335 (610)
                      ..||.+. .+..+.+.+|+.+.|.|.+.|.| .+.+.|++++..+....................+.|.|.+++.+| +|
T Consensus         5 ~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           5 NGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             CSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             ecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            3566664 56677888999999999999964 567999999998876543222211110000223579999999999 69


Q ss_pred             EEEEEeecCCcceeEEEEEEcCc
Q psy10487        336 EYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      .|+|.|.|..|.+++.+.|.|..
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEEEEECCCeEEEEEEEEEEC
Confidence            99999999999999999998854

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.7e-12  Score=98.67  Aligned_cols=81  Identities=16%  Similarity=0.265  Sum_probs=64.8

Q ss_pred             eeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ...+....+.+|++++|.|.+.+. |.+.+.|+|||..+.....              .+.|.|.+++.+|+|.|.|+|.
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------------~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------------NHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------------cceEEEeeeeeecCcEEEEEEE
Confidence            344566678899999999999776 5568999999988754321              2379999999999999999999


Q ss_pred             cCCcce-eEEEEEEcCc
Q psy10487        343 NIRGNA-SGEISLDLPE  358 (610)
Q Consensus       343 N~~G~~-~~~~~L~V~~  358 (610)
                      |..|.. +..+.|.|.+
T Consensus        70 n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          70 VWQLDYESEPLNITVIK   86 (89)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             eCCCCeEeeeEEEEEEe
Confidence            998875 4678888854

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.21  E-value=1.4e-11  Score=96.62  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.+...|....+.+|++++|.|.+.|.|.|. +.|++++..+....                ..|.|.+++.+|+|.|+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------------SSYFIDAATVNDSGEYR   68 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------------SEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc----------------eeeEecCCcccCCEEEE
Confidence            46777888889999999999999999999986 56778887765433                27999999999999999


Q ss_pred             EEeecCCccee
Q psy10487        339 CYAENIRGNAS  349 (610)
Q Consensus       339 C~a~N~~G~~~  349 (610)
                      |.|.|..++..
T Consensus        69 C~a~~s~~S~~   79 (84)
T d1fnla1          69 CQTNLSTLSDP   79 (84)
T ss_dssp             EECSSSCCCCC
T ss_pred             EEccCCCcccc
Confidence            99998766543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.21  E-value=1.2e-11  Score=97.24  Aligned_cols=78  Identities=22%  Similarity=0.428  Sum_probs=64.3

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|++||..+....                +.|.|.+++.+|+|.|+|
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------------~~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------------QPSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------------SSEEEEECCGGGCEEEEE
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------------cceEEeeccccCCcEEEE
Confidence            556777888899999999999999999887 588999998876543                279999999999999999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      .|.|..++..  +.|.|
T Consensus        69 ~a~ns~~S~~--v~l~V   83 (85)
T d2fcba1          69 QTGQTSLSDP--VHLTV   83 (85)
T ss_dssp             ECTTSBCCCC--EEEEE
T ss_pred             ECCCCccccc--EEEEE
Confidence            9999866544  44544

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.9e-12  Score=97.25  Aligned_cols=79  Identities=24%  Similarity=0.432  Sum_probs=61.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      +|.|...|....+.+|++++|.|.+.|.|.|. +.|++++..+....                ..|.|.+++.+|+|.|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~i~~v~~~d~G~Y~   64 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEYK   64 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------------ceeEECCCChhhCCcEE
Confidence            47888888888999999999999999999885 56788887765433                27999999999999999


Q ss_pred             EEeecCCcceeEEEEEEc
Q psy10487        339 CYAENIRGNASGEISLDL  356 (610)
Q Consensus       339 C~a~N~~G~~~~~~~L~V  356 (610)
                      |.|.|..++.  .+.|.|
T Consensus        65 C~a~~s~~S~--~v~l~V   80 (82)
T d1f2qa1          65 CQHQQVNESE--PVYLEV   80 (82)
T ss_dssp             EECTTSSCCC--CEEEEE
T ss_pred             EEecCCCCcc--cEEEEE
Confidence            9999976654  455555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.5e-11  Score=105.64  Aligned_cols=84  Identities=30%  Similarity=0.456  Sum_probs=72.0

Q ss_pred             CccEEEeecC-CCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         56 DIQVLDLNNN-KISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        56 ~L~~L~L~~n-~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      ++++|+|++| .|+.++..+|.  ++++|+.|+|++|+|+.+.+++|..+++|++|+|++|+|+.++.+.|..+ +|+.|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccCeeecCCCccccccCchhhc--cccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            5889999766 59999999888  78899999999999999999999999999999999999998888877654 68888


Q ss_pred             EeeCcccc
Q psy10487        135 YLNGNPIT  142 (610)
Q Consensus       135 ~Ls~N~l~  142 (610)
                      +|++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            88888764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.8e-11  Score=98.75  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=72.5

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEe-cCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      -|+.+.+.+....+.+|+.++|.|.+.| .|.|  ++.|++++..+......     ..    ...+.|.|..+..+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~-----~~----~~~s~l~i~~~~~dd~g   73 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-----GE----PAEVTTTVLVRRDHHGA   73 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-----TT----TEEEEEEEECCSSCSSC
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc-----cc----cceEEEEEeeehhHCCC
Confidence            4788888888888999999999999986 5666  58899999988654321     11    23468999999999999


Q ss_pred             EEEEEeecCCcceeEEEEEEcC
Q psy10487        336 EYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      .|+|+|+|..|.....+.+.+.
T Consensus        74 ~ytC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          74 QFSCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEEEEECGGGTSCEEEEEC
T ss_pred             EEEEEEEeCCCCccCeEeeeEc
Confidence            9999999999998777777763

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.17  E-value=3e-12  Score=101.75  Aligned_cols=83  Identities=20%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      .....++.+.+|+++.|.|.+ +.|.|.+.|++||..+..+.+.....+.+      ...|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGK------KHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSS------CEEEECCSCCSCCCSEECCBCSS
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeece------eEEEEEcCCChhcCEEEEEEECc
Confidence            345678899999999999997 67999999999999998776544433322      24899999999999999999988


Q ss_pred             CCcceeEEEEEEcC
Q psy10487        344 IRGNASGEISLDLP  357 (610)
Q Consensus       344 ~~G~~~~~~~L~V~  357 (610)
                      ..+    ++.|.|.
T Consensus        78 ~~~----sa~l~V~   87 (89)
T d1tiua_          78 AKS----AANLKVK   87 (89)
T ss_dssp             CBC----CEEEEEE
T ss_pred             eEE----EEEEEEE
Confidence            654    4556553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=3e-13  Score=125.10  Aligned_cols=118  Identities=25%  Similarity=0.272  Sum_probs=98.0

Q ss_pred             CCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCC
Q psy10487         44 ANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH  121 (610)
Q Consensus        44 ~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~  121 (610)
                      ..++.+|..+  ..+|++|+|++|+|+.++  .|.  ++.+|+.|+|++|.|+.++. .+..+.+|++|++++|+|+.+.
T Consensus        35 ~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~--~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~  109 (198)
T d1m9la_          35 PPIEKMDATLSTLKACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             TTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHH--HHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH
T ss_pred             CchhhhhhHHhcccccceeECcccCCCCcc--ccc--CCccccChhhcccccccccc-cccccccccccccccccccccc
Confidence            3566666555  358999999999999986  355  68899999999999998863 4455678999999999999874


Q ss_pred             cccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCcccccc
Q psy10487        122 QDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSV  168 (610)
Q Consensus       122 ~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~  168 (610)
                        .+..+++|+.|+|++|.++.+.. ..|..+++|+.|+|++|.+...
T Consensus       110 --~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         110 --GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             --HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             --cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence              47888999999999999988754 4578899999999999988655

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.1e-11  Score=98.39  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             eeeeecceEeecCceEEEEEEEEe-c--CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYG-D--PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g-~--P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +.+.+....+.+|+.++|.|.+.| .  |.++|+|++++..+.............    ...+.|.|.....+|.|.|+|
T Consensus         5 v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~----~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           5 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQ----EATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             CEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTT----CEEEEEEEECCGGGGGCEEEE
T ss_pred             CEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeeccc----ceeEEEEEeeehhcCCcEEEE
Confidence            345667778899999999999986 4  455899999999987654332222222    234578888778888889999


Q ss_pred             EeecCCcceeEEEEEEc
Q psy10487        340 YAENIRGNASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~~~~~~L~V  356 (610)
                      +|+|.+|.....+.+.+
T Consensus        81 ~A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          81 LAVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEEECGGGTCCEEEEE
T ss_pred             EEEecCCCCCCeeEecc
Confidence            99999987766666665

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.1e-11  Score=99.19  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             ecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        267 ESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +..+.+.+|+.+.|.|.+. +.|.++|.|++++..+.........      .....+.|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASR------IHQHKEKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSS------EEEETTEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceE------EeccCCEEEeccceecCCEEEEEEEECCC
Confidence            3455677899999999885 7899999999988655433221111      11233589999999999999999999999


Q ss_pred             cceeEEEEEEcC
Q psy10487        346 GNASGEISLDLP  357 (610)
Q Consensus       346 G~~~~~~~L~V~  357 (610)
                      |....++.|.|.
T Consensus        83 g~~~~~~~L~V~   94 (101)
T d1iray1          83 YCLRIKISAKFV   94 (101)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEE
Confidence            999999999984

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.12  E-value=1.7e-11  Score=101.60  Aligned_cols=87  Identities=15%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             cceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe---EEEEEeec
Q psy10487        268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG---EYTCYAEN  343 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G---~Y~C~a~N  343 (610)
                      .+.++.+|++++|.|++ .|.|.|.+.|+|++..+..........  ........++|.|.+++.+|+|   .|+|.|.|
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFD--RRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCC--TTEEECTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeee--eeeccccccccEEeeeEeeccCCceEEEEEEEe
Confidence            34567899999999997 899999999999877654332211100  0001112358999999998877   79999999


Q ss_pred             CCcceeEEEEEEc
Q psy10487        344 IRGNASGEISLDL  356 (610)
Q Consensus       344 ~~G~~~~~~~L~V  356 (610)
                      .+|.+...+.+.+
T Consensus        88 ~~g~~~~~~~~~~  100 (111)
T d1biha2          88 AAVDEEVVLVEYE  100 (111)
T ss_dssp             TTCSSCEEEEEEE
T ss_pred             CCCCceEEEEEEE
Confidence            9999887765544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.5e-11  Score=96.71  Aligned_cols=70  Identities=17%  Similarity=0.283  Sum_probs=57.7

Q ss_pred             eEeecCceEEEEE------EEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        270 VIREAGGNVTMSC------YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       270 ~~v~~G~~v~l~C------~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      +.+..|+...|.|      .+.|+|.|.|.|++||..+...... ..        ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~-~~--------~~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FS--------GVKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSS-EE--------EETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcE-EE--------ecCCEEEEcccccccCcEEEEEEEE
Confidence            5678899999999      6789999999999999998765432 11        2224899999999999999999999


Q ss_pred             CCcce
Q psy10487        344 IRGNA  348 (610)
Q Consensus       344 ~~G~~  348 (610)
                      ..|..
T Consensus        80 ~~~g~   84 (103)
T d1iray2          80 TYLGK   84 (103)
T ss_dssp             EETTE
T ss_pred             CcCCE
Confidence            88754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.05  E-value=1.4e-09  Score=108.85  Aligned_cols=54  Identities=15%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc
Q psy10487         36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV   96 (610)
Q Consensus        36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i   96 (610)
                      -..+++++.+|+++|. ++.+|++|+|++|+|+.++..      +.+|+.|++.+|+++.+
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~------~~~L~~L~l~~n~l~~l   93 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKAL   93 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCC
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc------hhhhhhhhhhhcccchh
Confidence            4689999999999995 567899999999999988642      23455555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=4.6e-09  Score=104.98  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=99.2

Q ss_pred             CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL  134 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L  134 (610)
                      .++++|||++|.++.++.      .+++|++|+|++|+|+.++.    .+.+|++|++++|++..+..  +  ...|++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~------~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~--l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCCCCCC------CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhh--h--ccccccc
Confidence            478999999999999873      25689999999999998863    24689999999999988753  1  2569999


Q ss_pred             EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487        135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~  213 (610)
                      +|++|.+..++.  +..+++|+.|++++|.+.....    ....+..+.+..+.....  ..+..+..++.+.+.+|..
T Consensus       104 ~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         104 GVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             ECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccccc--ccccccccceecccccccc
Confidence            999999998864  6778999999999998876642    123444444444433322  2234455566666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.4e-09  Score=103.19  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             CccEEEeecCCCCCCC-hhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC-CCCCCCc-ccccCCCCCc
Q psy10487         56 DIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN-QIAWLHQ-DTFLGNDRLK  132 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~-~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n-~l~~l~~-~~f~~l~~L~  132 (610)
                      ++++|||+++.+..-. ...+.  .+++|++|+|++|.+.......|..+++|++|+|+++ .++...- ..+.++++|+
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCEEECCCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4555555555443211 11222  4455555555555554444444555555555555552 3332110 1123345555


Q ss_pred             EEEeeCc-cccc----------------------------cCc-CcCCCCCCccEEEccCc-cccccCHHHhhcCccccc
Q psy10487        133 VLYLNGN-PITE----------------------------LRA-GQFPKLPYLKTIELQHC-QIHSVHKDALIHLTALES  181 (610)
Q Consensus       133 ~L~Ls~N-~l~~----------------------------l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  181 (610)
                      +|+|+++ .++.                            ... ..+.++++|+.|+|++| .++......+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            5555543 2221                            100 01123455566666554 344333344455555666


Q ss_pred             cccccc-cccccCcccccCCCcccEEecCCC
Q psy10487        182 LNLNGN-RLKHLSESVFFPTPNLKTLSLDGN  211 (610)
Q Consensus       182 L~L~~n-~l~~~~~~~~~~~~~L~~l~l~~N  211 (610)
                      |+|+++ .+++.....+..+++|+.|++.++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666552 344333333445555666665543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.1e-09  Score=85.60  Aligned_cols=83  Identities=20%  Similarity=0.173  Sum_probs=58.2

Q ss_pred             cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeecc-CCcee---eeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE-GDALF---EKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      +.+....|++|+|.|.+ +.|.+.|.|++++..+............ .....   ...+.|+|.+++.+|+|.|+|.|.|
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            45678899999999985 5689999999998876432221111111 00000   1235899999999999999999999


Q ss_pred             CCcceeEE
Q psy10487        344 IRGNASGE  351 (610)
Q Consensus       344 ~~G~~~~~  351 (610)
                      ..|.....
T Consensus        82 ~~~t~~~~   89 (93)
T d1ccza1          82 ITDTMKFF   89 (93)
T ss_dssp             CCSCEEEE
T ss_pred             CCcEEEEE
Confidence            88765533

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=6.1e-09  Score=83.62  Aligned_cols=88  Identities=14%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             ceEeecCceEEEEEEEE--ecCCCeEEEEeCCEEeccCCccce-eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        269 MVIREAGGNVTMSCYVY--GDPEPTILWLLNGQVLHNSSFDLL-EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~--g~P~p~v~W~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+....|++|+|.|...  ......|.|++++..+........ ...........+++|+|.+++.+|+|.|+|.+.|..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            45667899999999632  223357999999987754322111 111122222345789999999999999999999999


Q ss_pred             cce--eEEEEEEc
Q psy10487        346 GNA--SGEISLDL  356 (610)
Q Consensus       346 G~~--~~~~~L~V  356 (610)
                      |..  ++++.|.|
T Consensus        84 g~~~~~~~~~L~V   96 (98)
T d1hnga1          84 GTRILNKALDLRI   96 (98)
T ss_dssp             CCEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            986  56777776

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.5e-08  Score=84.01  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             eecceEeecCceEEEEEEEEecC---CCeEEEEeCCEEe--c--cCCc-----------cceeeccCCceeeeeeEEEEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQVL--H--NSSF-----------DLLEEEEGDALFEKSVSITLF  327 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~g~~l--~--~~~~-----------~~~~~~~~~~~~~~~~~L~I~  327 (610)
                      +...+.+.+|++++|.|...+..   ...|.|++.+...  .  ....           .+..... +.......+|+|.
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~sL~I~   86 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK-ESIGEGKVALRIQ   86 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEEC-TTGGGTEEEEEES
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEee-ccccCCeEEEEEE
Confidence            34458889999999999986433   3468999864321  0  0000           0000000 0001124689999


Q ss_pred             ecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487        328 NVTDLDAGEYTCYAENIRGNASGEISLDLPE  358 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  358 (610)
                      +++.+|+|.|.|.+.+..|..+..+.|.|.+
T Consensus        87 ~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          87 NVRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            9999999999999999999999999999853

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=3.8e-08  Score=80.21  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=59.2

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC-----Cc--cceee---ccCCceeeeeeEEEEEecCCCCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-----SF--DLLEE---EEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~-----~~--~~~~~---~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      +.+....+.+|++|.|.|+........+.|+|........     ..  .....   -.++..+..+++|.|.+++.+|+
T Consensus         4 i~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~   83 (107)
T d1l6za1           4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM   83 (107)
T ss_dssp             EEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGC
T ss_pred             EEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhC
Confidence            3333445779999999997433335679999954332111     00  00000   01222334557999999999999


Q ss_pred             eEEEEEeecCCc-ceeEEEEEEc
Q psy10487        335 GEYTCYAENIRG-NASGEISLDL  356 (610)
Q Consensus       335 G~Y~C~a~N~~G-~~~~~~~L~V  356 (610)
                      |.|+|.+.+..+ ..++++.|+|
T Consensus        84 G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          84 GVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Confidence            999999988764 5667777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=4.5e-08  Score=97.80  Aligned_cols=135  Identities=20%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             CccEEEeecCCCCCCChhhhccc--CCCCccEEEcccCCCcccchhh-------------hcCCCCCcEEEccCCCCCCC
Q psy10487         56 DIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVHRDT-------------FKYLTILVEVDLSDNQIAWL  120 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~~~~~~~~--~l~~L~~L~L~~n~l~~i~~~~-------------f~~l~~L~~LdLs~n~l~~l  120 (610)
                      +|+.|+|++|.|.......+...  ..++|++|++++|.+.......             ......|+.|++++|++...
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            56777777776665443332110  3456666666666553211000             12334455555555555432


Q ss_pred             Cc----ccccCCCCCcEEEeeCcccccc-----CcCcCCCCCCccEEEccCccccccCH----HHhhcCccccccccccc
Q psy10487        121 HQ----DTFLGNDRLKVLYLNGNPITEL-----RAGQFPKLPYLKTIELQHCQIHSVHK----DALIHLTALESLNLNGN  187 (610)
Q Consensus       121 ~~----~~f~~l~~L~~L~Ls~N~l~~l-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n  187 (610)
                      ..    ..+....+|+.|+|++|.+..-     ....+..+++|+.|+|++|.+.....    ..+..+++|+.|+|++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            21    1123344555555555554431     12233444555555555555433211    22334455555555555


Q ss_pred             ccc
Q psy10487        188 RLK  190 (610)
Q Consensus       188 ~l~  190 (610)
                      .|.
T Consensus       254 ~i~  256 (344)
T d2ca6a1         254 LLS  256 (344)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.47  E-value=2.2e-08  Score=100.21  Aligned_cols=181  Identities=23%  Similarity=0.259  Sum_probs=125.8

Q ss_pred             cEEEcCCCCCCc-----cCccc--CCCccEEEeecCCCCCCChhhhc-----------ccCCCCccEEEcccCCCcccc-
Q psy10487         37 KSALCKDANFTA-----LPSTL--DSDIQVLDLNNNKISYLTKEAFK-----------SIGLLNLQRIYLKNSGIREVH-   97 (610)
Q Consensus        37 ~~~~C~~~~l~~-----lP~~l--~~~L~~L~L~~n~i~~l~~~~~~-----------~~~l~~L~~L~L~~n~l~~i~-   97 (610)
                      ..++..++.+..     +...+  ..+|+.|+|++|.+.......+.           ..+...|+.|.+++|.+..-. 
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence            457776665543     22222  35899999999987532111110           015678999999999887543 


Q ss_pred             ---hhhhcCCCCCcEEEccCCCCCCC-----CcccccCCCCCcEEEeeCccccccC----cCcCCCCCCccEEEccCccc
Q psy10487         98 ---RDTFKYLTILVEVDLSDNQIAWL-----HQDTFLGNDRLKVLYLNGNPITELR----AGQFPKLPYLKTIELQHCQI  165 (610)
Q Consensus        98 ---~~~f~~l~~L~~LdLs~n~l~~l-----~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~n~l  165 (610)
                         ..++.....|++|+|++|+|...     ....+..+++|+.|+|++|.++...    ...+..+++|+.|+|++|.|
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence               23456788999999999998752     2344677899999999999987532    23456789999999999999


Q ss_pred             cccCHHHh----hc--CccccccccccccccccCc----ccc-cCCCcccEEecCCCcccccC
Q psy10487        166 HSVHKDAL----IH--LTALESLNLNGNRLKHLSE----SVF-FPTPNLKTLSLDGNPWCCDC  217 (610)
Q Consensus       166 ~~~~~~~~----~~--l~~L~~L~L~~n~l~~~~~----~~~-~~~~~L~~l~l~~N~~~c~c  217 (610)
                      .......+    ..  ...|+.|++++|.|.....    ..+ ...+.|+.|++++|.+..+.
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            86544333    22  3579999999999875321    122 24678999999999997643

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.7e-08  Score=80.15  Aligned_cols=98  Identities=23%  Similarity=0.355  Sum_probs=63.3

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCC----eEEEEeCCEEecc--------CCcccee--ecc--CCce-----
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNGQVLHN--------SSFDLLE--EEE--GDAL-----  317 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p----~v~W~~~g~~l~~--------~~~~~~~--~~~--~~~~-----  317 (610)
                      +...+..+...+.+.+|++++|.|...+.+.+    .+.|++.+.....        .......  ...  ++..     
T Consensus         3 ~~l~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   82 (124)
T d1eaja_           3 RSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND   82 (124)
T ss_dssp             SSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC
T ss_pred             cceEEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccC
Confidence            44455555566888999999999998765442    5889873111000        0000000  000  0000     


Q ss_pred             -eeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487        318 -FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL  356 (610)
Q Consensus       318 -~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  356 (610)
                       ......|+|.+++.+|+|.|.|.+.+..|.....+.|.|
T Consensus        83 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          83 LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence             012347999999999999999999999998888888887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1e-07  Score=92.38  Aligned_cols=149  Identities=21%  Similarity=0.209  Sum_probs=97.7

Q ss_pred             cEEEcCCCCCCc--cCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccC-CCcccchh-hhcCCCCCcEE
Q psy10487         37 KSALCKDANFTA--LPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRD-TFKYLTILVEV  110 (610)
Q Consensus        37 ~~~~C~~~~l~~--lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i~~~-~f~~l~~L~~L  110 (610)
                      +.++.++..+..  +..-+  ..+|++|+|+++.+.......+.  .+++|++|+|++| .++...-. .+.++++|++|
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh--cCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            566666655432  22111  24788888888876654444554  5778888888875 45432211 23466778888


Q ss_pred             EccCC-CCCC-------------------------CCc----ccccCCCCCcEEEeeCc-cccccCcCcCCCCCCccEEE
Q psy10487        111 DLSDN-QIAW-------------------------LHQ----DTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYLKTIE  159 (610)
Q Consensus       111 dLs~n-~l~~-------------------------l~~----~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~  159 (610)
                      +|+++ ++..                         +..    ..+.++++|++|+|++| .+++.....+.++++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            87764 3321                         000    11244678999999986 46665556678899999999


Q ss_pred             ccCc-cccccCHHHhhcCccccccccccc
Q psy10487        160 LQHC-QIHSVHKDALIHLTALESLNLNGN  187 (610)
Q Consensus       160 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  187 (610)
                      |++| .++......+.++++|+.|++.++
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9996 676655556788899999999887

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.5e-08  Score=79.59  Aligned_cols=41  Identities=5%  Similarity=-0.083  Sum_probs=36.5

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      +....|.|.+++.+|+|.|+|.|.|..|+.+..+.|.|.+.
T Consensus        53 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   93 (101)
T d2cqva1          53 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK   93 (101)
T ss_dssp             SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECS
T ss_pred             cceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEec
Confidence            44457999999999999999999999999999999888764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=4.4e-08  Score=78.34  Aligned_cols=41  Identities=15%  Similarity=-0.020  Sum_probs=36.0

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      .....|.|.+++.+|+|.|+|+|.|..|..+..+.|.|.+.
T Consensus        54 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          54 GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             TTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECS
T ss_pred             CCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeec
Confidence            34457999999999999999999999999999999888653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.6e-07  Score=96.88  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             CccEEEeecCCCCCCC-hhhhcccCCCCccEEEcccCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcc----ccc
Q psy10487         56 DIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVH----RDTFKYLTILVEVDLSDNQIAWLHQD----TFL  126 (610)
Q Consensus        56 ~L~~L~L~~n~i~~l~-~~~~~~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~LdLs~n~l~~l~~~----~f~  126 (610)
                      +|++||+++|+|+... ...+.  .+.+|+.|+|++|+|+...    ..+|..+++|++|||++|+|......    .+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            6899999999998754 23344  5789999999999987433    34578899999999999998643211    222


Q ss_pred             -CCCCCcEEEeeCccccccC----cCcCCCCCCccEEEccCccccccC
Q psy10487        127 -GNDRLKVLYLNGNPITELR----AGQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus       127 -~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                       ...+|+.|+|++|.++...    ...+..+++|+.|+|++|.|....
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~  128 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  128 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence             2357999999999987643    245677899999999999987643

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.7e-07  Score=70.98  Aligned_cols=41  Identities=12%  Similarity=0.026  Sum_probs=36.0

Q ss_pred             ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ..+..+.|.|.+++.+|+|.|+|+|.|..|..+.+.+|.|+
T Consensus        50 ~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          50 SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            34556789999999999999999999999999999988763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.8e-08  Score=86.21  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=8.8

Q ss_pred             cCCCCCcEEEccCCCCCCC
Q psy10487        102 KYLTILVEVDLSDNQIAWL  120 (610)
Q Consensus       102 ~~l~~L~~LdLs~n~l~~l  120 (610)
                      ..++.|++|+|++|+|+.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l   80 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRL   80 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCC
T ss_pred             HhCCCCCEeeCCCccccCC
Confidence            3444444444444444443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8e-06  Score=66.20  Aligned_cols=75  Identities=23%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             EeecCceEEEEEEEEe-cCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        271 IREAGGNVTMSCYVYG-DPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g-~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      .+.+|+.++|.|.+.| .|.+  .|.|++++..+..........  ..+.....+.|++.-...+|...|+|+|+|.++.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~--~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD--RKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCS--SCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccc--cCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            3678999999999974 6754  689999998876543221111  1222344566777644444455899999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-07  Score=95.23  Aligned_cols=161  Identities=16%  Similarity=0.097  Sum_probs=101.2

Q ss_pred             CCccEEEeecCCCCCCChhhhcc--cCCCCccEEEcccCCCcccchhh-----hcCCCCCcEEEccCCCCCCCCccc---
Q psy10487         55 SDIQVLDLNNNKISYLTKEAFKS--IGLLNLQRIYLKNSGIREVHRDT-----FKYLTILVEVDLSDNQIAWLHQDT---  124 (610)
Q Consensus        55 ~~L~~L~L~~n~i~~l~~~~~~~--~~l~~L~~L~L~~n~l~~i~~~~-----f~~l~~L~~LdLs~n~l~~l~~~~---  124 (610)
                      ..++.|++++|.+.......+..  .....++.+++++|.+.......     ......|+.+++++|.+.......   
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            46888888888776443221110  03667888888888776432221     224457888888888877544332   


Q ss_pred             -ccCCCCCcEEEeeCccccccC-----cCcCCCCCCccEEEccCccccccCH----HHhhcCccccccccccccccccCc
Q psy10487        125 -FLGNDRLKVLYLNGNPITELR-----AGQFPKLPYLKTIELQHCQIHSVHK----DALIHLTALESLNLNGNRLKHLSE  194 (610)
Q Consensus       125 -f~~l~~L~~L~Ls~N~l~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~  194 (610)
                       +....+|++|+|++|.++...     .........|+.|+|++|+|+....    ..+..+++|++|+|++|.|+....
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence             344568888999888876421     1112245678889998888875422    345566888889999888764221


Q ss_pred             c----ccc-CCCcccEEecCCCcccc
Q psy10487        195 S----VFF-PTPNLKTLSLDGNPWCC  215 (610)
Q Consensus       195 ~----~~~-~~~~L~~l~l~~N~~~c  215 (610)
                      .    .+. ....|+.|++.+|.|..
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCH
Confidence            1    121 23468888888888764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=69.06  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=51.8

Q ss_pred             ceEeecCceEEEEEEEEecCCCeEEEEeCCE--EeccCCccceeec----cC-----CceeeeeeEEEEEecCCCCCeEE
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQ--VLHNSSFDLLEEE----EG-----DALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~--~l~~~~~~~~~~~----~~-----~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .+...+|++|+|.|.........+.|++...  .+...........    +.     +.......+|+|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            3567899999999998777777899998432  1111110000000    00     00001124799999999999999


Q ss_pred             EEEeecCCcceeEEEEEEc
Q psy10487        338 TCYAENIRGNASGEISLDL  356 (610)
Q Consensus       338 ~C~a~N~~G~~~~~~~L~V  356 (610)
                      .|.+.+.    ...+.|.|
T Consensus        83 ~C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          83 ICEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEEETTE----EEEEEEEE
T ss_pred             EEEEecC----CeEEEEEC
Confidence            9999763    34555543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.5e-05  Score=61.32  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             cCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487        274 AGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE  351 (610)
Q Consensus       274 ~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  351 (610)
                      .++.++|.|.+.| .|+|.|.|++||..+..... .......++.+...+.|.+.   ..+...|+|.+++..-.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~-~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccce-eeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence            5778999999987 69999999999988865442 23334445566777788875   345679999998876544433

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=1.6e-06  Score=67.99  Aligned_cols=40  Identities=18%  Similarity=0.061  Sum_probs=35.2

Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ...++.|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|.
T Consensus        51 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          51 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            3456789999999999999999999999999988887663

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=7.6e-07  Score=69.56  Aligned_cols=38  Identities=11%  Similarity=-0.010  Sum_probs=33.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .++.|.|.+++.+|+|.|+|.|.|..|+++..+.|.|.
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          51 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            45689999999999999999999999999998888663

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.8e-06  Score=67.32  Aligned_cols=39  Identities=13%  Similarity=-0.052  Sum_probs=34.6

Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ...++.|.|.+++.+|+|.|+|.|+|..|..+..++|.|
T Consensus        50 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          50 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            345678999999999999999999999999998888765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=1.3e-07  Score=74.88  Aligned_cols=38  Identities=11%  Similarity=0.018  Sum_probs=33.9

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|+.+..++|.|
T Consensus        55 ~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            44558999999999999999999999999999888765

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.05  E-value=8.4e-06  Score=64.65  Aligned_cols=82  Identities=22%  Similarity=0.269  Sum_probs=57.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecC--CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+.. .+..|+.++|.|.+.|.-  ...|+|++||..+..+........++++.+...+.|.+.   .++.+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEE
Confidence            5777776543 456788999999999973  357999999988865432222334555566666777664   4566789


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998754

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.04  E-value=1.3e-07  Score=74.47  Aligned_cols=41  Identities=12%  Similarity=-0.044  Sum_probs=36.2

Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ......|.|.+++.+|+|.|+|.|.|..|+.+..+.|.|.+
T Consensus        51 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~e   91 (91)
T d1tnna_          51 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK   91 (91)
T ss_dssp             CSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECCC
T ss_pred             ecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            34566899999999999999999999999999999887753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=6.1e-06  Score=67.99  Aligned_cols=93  Identities=19%  Similarity=0.343  Sum_probs=54.3

Q ss_pred             eeeecceEeecCceEEEEEEEEec----CCCeEEEEeC--CE----Eecc-CCccceeec--c--CCcee-----eeeeE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGD----PEPTILWLLN--GQ----VLHN-SSFDLLEEE--E--GDALF-----EKSVS  323 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~----P~p~v~W~~~--g~----~l~~-~~~~~~~~~--~--~~~~~-----~~~~~  323 (610)
                      ...+..+.+..|++++|.|.....    ....+.|++.  +.    .+.. .........  .  ++..+     .....
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            445777889999999999987532    3347999872  21    1100 000000000  0  00000     11247


Q ss_pred             EEEEecCCCCCeEEEEEeecCCcc--eeEEEEEEc
Q psy10487        324 ITLFNVTDLDAGEYTCYAENIRGN--ASGEISLDL  356 (610)
Q Consensus       324 L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~L~V  356 (610)
                      |.|.+++.+|+|.|.|.+.+..+.  ....++|.|
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            999999999999999999986543  345667766

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.02  E-value=1.8e-06  Score=67.41  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=32.5

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .+..|.|.+++.+|+|.|+|.|.|..|+.+..+.|.|
T Consensus        52 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          52 TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            4456999999999999999999999999988877754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.3e-07  Score=79.90  Aligned_cols=66  Identities=18%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             CCCCccEEEcccCCCcccch--hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcccccc
Q psy10487         79 GLLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL  144 (610)
Q Consensus        79 ~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  144 (610)
                      .+++|++|+|++|+|+.+.+  ..+..+++|+.|||++|+|..+..-.+....+|+.|+|++|++...
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            57899999999999998763  5577889999999999999988765555566788888888887654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=6e-06  Score=65.06  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|..+ +..|++|+|.|+.. .+...+.|+|+|.........  ....     .....+.|.+|+..|+|.|.|
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~--~~~~-----~~~a~F~i~~v~~~~~G~Y~C   74 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK--PPER-----INKVKFYIPDMNSRMAGQYSC   74 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS--SCTT-----CCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc--cCCC-----ccEEEEEEeeeecCCCceEEE
Confidence            47777777554 67999999999864 345678899988653322110  0001     123479999999999999999


Q ss_pred             EeecCCcc--eeEEEEEEc
Q psy10487        340 YAENIRGN--ASGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~--~~~~~~L~V  356 (610)
                      ...+..+.  .+..+.|.|
T Consensus        75 ~y~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          75 IYRVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             EEEETTEECCCCCCEEEEE
T ss_pred             EeCCCCCccCCCCCEEEEE
Confidence            99887653  244566665

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.3e-07  Score=75.25  Aligned_cols=36  Identities=11%  Similarity=-0.105  Sum_probs=30.9

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeee-eeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v  457 (610)
                      ...|.|.++..+|+|.|+|+|.|..|++... ++|.|
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            4579999999999999999999999987554 67765

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.3e-06  Score=67.23  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|.. .+..|++|+|.|++. .+.-.+.|+|+|...............     .....+.|.+|+..|+|.|.|
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~-----~~~a~F~l~~vt~~~~G~Y~C   79 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWN-----ETDPEFVIDHMDANKAGRYQC   79 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC---------CCCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCC-----CceEEEEecCCCHHHCceEEE
Confidence            5778777765 578899999999864 355678999876422111110000000     122478999999999999999


Q ss_pred             EeecCCcce--eEEEEEEc
Q psy10487        340 YAENIRGNA--SGEISLDL  356 (610)
Q Consensus       340 ~a~N~~G~~--~~~~~L~V  356 (610)
                      ...+..+..  +..+.|.|
T Consensus        80 ~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          80 QYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             EEEETTTEEEECCCEEEEE
T ss_pred             EEECCCcccCCCCCEEEEe
Confidence            999876632  34555554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.6e-06  Score=69.67  Aligned_cols=41  Identities=15%  Similarity=-0.142  Sum_probs=37.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP  462 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp  462 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|+++.++++.|.++|-
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             eEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            45799999999999999999999999999999999988763

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.96  E-value=1.1e-05  Score=65.97  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---ecc-CCccceeecc----CCceeeeeeEEEEEecCC
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHN-SSFDLLEEEE----GDALFEKSVSITLFNVTD  331 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~-~~~~~~~~~~----~~~~~~~~~~L~I~~v~~  331 (610)
                      .|...|..+.+.+|++++|.|.........+.|++-  +..   +.. ..........    .........+|+|.+++.
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~   81 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   81 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence            356678889999999999999988777788999972  111   110 0000000000    000012345899999999


Q ss_pred             CCCeEEEEEeecCCc
Q psy10487        332 LDAGEYTCYAENIRG  346 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G  346 (610)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~Y~Ca~~~~~~   96 (114)
T d2cdea1          82 SDSASYICVVSDRGS   96 (114)
T ss_dssp             GGCSEEEEEEECSCT
T ss_pred             hhCcccceeeecCCC
Confidence            999999999987543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=8.9e-06  Score=67.36  Aligned_cols=83  Identities=24%  Similarity=0.384  Sum_probs=55.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe-------ccCC-ccceeeccC---Cceee------e
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL-------HNSS-FDLLEEEEG---DALFE------K  320 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l-------~~~~-~~~~~~~~~---~~~~~------~  320 (610)
                      .|.+...|..+.+.+|++++|.|.+.+...+.+.|++  .|..+       .... ........+   ...+.      .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            3778889999999999999999999888888999998  22211       0010 000111100   00000      1


Q ss_pred             eeEEEEEecCCCCCeEEEEEee
Q psy10487        321 SVSITLFNVTDLDAGEYTCYAE  342 (610)
Q Consensus       321 ~~~L~I~~v~~~D~G~Y~C~a~  342 (610)
                      ...|+|.+++.+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            2379999999999999999875

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=66.56  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=36.4

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ  460 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~  460 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|..+....+.|...
T Consensus        42 ~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          42 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence            45567999999999999999999999999999988888754

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.95  E-value=2.1e-07  Score=74.31  Aligned_cols=37  Identities=14%  Similarity=0.005  Sum_probs=33.7

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ...|.|.+++.+|+|.|+|+|.|..|..+..+.|.|.
T Consensus        60 ~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence            3479999999999999999999999999999888775

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3e-06  Score=66.20  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=34.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|+.+.++++.|.
T Consensus        51 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          51 GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            455689999999999999999999999999998888764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.93  E-value=1.8e-05  Score=63.58  Aligned_cols=82  Identities=21%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec--cCCccceee-ccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH--NSSFDLLEE-EEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~--~~~~~~~~~-~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.........+.|++-  |....  ......... .......   .....|+|.+++.+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            45567888899999999999987666667999982  22111  100000000 0000001   1224799999999999


Q ss_pred             eEEEEEeecC
Q psy10487        335 GEYTCYAENI  344 (610)
Q Consensus       335 G~Y~C~a~N~  344 (610)
                      |.|.|.+.+.
T Consensus        83 A~YyCa~~~~   92 (106)
T d1a0ql1          83 ATYYCLQYYN   92 (106)
T ss_dssp             SEEEEEECSS
T ss_pred             EeEEEEEeCC
Confidence            9999987553

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.93  E-value=2.2e-06  Score=68.72  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=33.5

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|+.++++.|.|.
T Consensus        64 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          64 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence            4579999999999999999999999999998888764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.92  E-value=6e-05  Score=59.29  Aligned_cols=84  Identities=30%  Similarity=0.526  Sum_probs=57.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-C-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-P-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+.+.+.. ....++.++|.|.+.|. | ...|+|.+||..+...........++++.+...+.|.+.   .++...|
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~y   78 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTY   78 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEE
Confidence            5666665432 24557889999999997 3 457999999998865543333445556666667777764   4555689


Q ss_pred             EEEeecCCcc
Q psy10487        338 TCYAENIRGN  347 (610)
Q Consensus       338 ~C~a~N~~G~  347 (610)
                      +|++......
T Consensus        79 tC~V~H~sl~   88 (98)
T d1hdmb1          79 TCVVEHIGAP   88 (98)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEeCCCC
Confidence            9999886543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.5e-07  Score=74.45  Aligned_cols=39  Identities=3%  Similarity=-0.071  Sum_probs=35.0

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ....|.|.++..+|+|.|+|.|.|..|+.+..+.|.|.+
T Consensus        92 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            345799999999999999999999999999999988764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=4.9e-06  Score=66.30  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=35.7

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|+.+..+.|.|..
T Consensus        60 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            4456899999999999999999999999999998888764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-05  Score=62.55  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+.......++.++|.|.+.|. |. ..|+|.+||..+...........++++.+...+.|.|..-.-.....|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            5666654432222245678999999886 43 379999999988654332222333455667778888876665567789


Q ss_pred             EEEeecCCccee
Q psy10487        338 TCYAENIRGNAS  349 (610)
Q Consensus       338 ~C~a~N~~G~~~  349 (610)
                      +|++........
T Consensus        85 tC~V~H~~~~~~   96 (102)
T d1q0xl2          85 SCQVTHEGHSSN   96 (102)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCccEe
Confidence            999998654433

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.7e-06  Score=68.62  Aligned_cols=40  Identities=15%  Similarity=-0.022  Sum_probs=36.1

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ...|.|.+++.+|+|.|+|+|+|..|+++.++.+.|.++|
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          61 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             eEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            3469999999999999999999999999999999988653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.88  E-value=5.8e-07  Score=73.14  Aligned_cols=38  Identities=16%  Similarity=-0.078  Sum_probs=34.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|.+.+++.|.|+
T Consensus        72 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            34579999999999999999999999999999988763

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.87  E-value=4e-06  Score=66.47  Aligned_cols=39  Identities=13%  Similarity=0.125  Sum_probs=34.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      .....|.|.+++.+|+|.|+|.|.|..|.++..+.|.|+
T Consensus        59 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            445689999999999999999999999999998888763

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.5e-07  Score=74.48  Aligned_cols=39  Identities=8%  Similarity=-0.146  Sum_probs=35.5

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ..|.|.+++.+|+|.|+|.|.|..|..++.++|.|.+++
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            469999999999999999999999999999999887654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.9e-05  Score=64.58  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             eeecceEeecCceEEEEEEEEec---CCCeEEEEeCCE--E---eccCCccceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQ--V---LHNSSFDLLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~~g~--~---l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      ..|..+.+.+|++++|.|...+.   ..-.+.|++...  .   +............++...     .....|+|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            35677889999999999986432   234578987321  1   111110000000000000     1124899999999


Q ss_pred             CCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487        332 LDAGEYTCYAENIRGNASGEISLDLP  357 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  357 (610)
                      +|+|.|.|.+..........+.|+|.
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEE
Confidence            99999999987554444556777774

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.7e-07  Score=71.68  Aligned_cols=38  Identities=13%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             ccccceeeeeee-eccCcceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .....|.|.++. ..|+|.|+|.|.|..|+.+..+.|.|
T Consensus        62 ~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             TTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            344579999998 46999999999999999998888766

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.84  E-value=5.7e-05  Score=59.84  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=57.1

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      .+|.+.+.+... ...|+.++|.|.+.|. |. ..|+|.+||..+..+........++++.+...+.|.+..   .+...
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            467777755332 4567888999999987 43 479999999988754332233345555666777787754   44557


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |+|++....
T Consensus        80 ytC~V~H~s   88 (101)
T d1fnga1          80 YDCEVDHWG   88 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.4e-06  Score=70.11  Aligned_cols=37  Identities=16%  Similarity=0.079  Sum_probs=31.3

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ...+.|.|.+++.+|+|.|+|.|+|..|+...++.+.
T Consensus        63 ~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~   99 (104)
T d1nbqa2          63 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR   99 (104)
T ss_dssp             TTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBC
T ss_pred             ecccceEECCCCcccCcEEEEEEEECCCceEEEEEEE
Confidence            4456799999999999999999999999987765543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.82  E-value=3.9e-05  Score=62.63  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCcee-----eeeeEEEEEecCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDALF-----EKSVSITLFNVTDL  332 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~  332 (610)
                      |...+..+.+.+|++++|.|.........+.|+|.  |....   ................     .....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            55667788899999999999998777888999982  22111   0000000000000000     11246999999999


Q ss_pred             CCeEEEEEeecCC
Q psy10487        333 DAGEYTCYAENIR  345 (610)
Q Consensus       333 D~G~Y~C~a~N~~  345 (610)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999876543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.82  E-value=6.6e-07  Score=70.72  Aligned_cols=32  Identities=16%  Similarity=0.057  Sum_probs=28.1

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ..++.|.|.++..+|+|.|+|+|.|..|.+..
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          55 KDEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             TTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            45678999999999999999999999997543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.5e-06  Score=65.00  Aligned_cols=53  Identities=15%  Similarity=0.004  Sum_probs=35.5

Q ss_pred             cccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee-eeeeccccc
Q psy10487        407 KRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAME  459 (610)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~~  459 (610)
                      ..|.+++..+........|.|.+++.+|+|.|.|.|.|..|... ..+.+.|.+
T Consensus        33 ~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          33 VIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK   86 (89)
T ss_dssp             EEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEe
Confidence            33444444443344556799999999999999999999887643 223444443

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.81  E-value=4.3e-05  Score=61.90  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEec--CCCeEEEEeC--CE----EeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLN--GQ----VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~--g~----~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |...|..+.+.+|++++|.|..++.  ....+.|++.  |.    .+....+.......+    .....|+|.+++.+|+
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~----~~~~~L~I~~l~~~Ds   77 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSG----SKSFSLRINDLTVEDG   77 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETT----TTEEEEEECSCCGGGC
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecC----CceeeeEecCCcCccC
Confidence            4566788889999999999988653  4567999982  21    111111111111111    1124899999999999


Q ss_pred             eEEEEEeecCC
Q psy10487        335 GEYTCYAENIR  345 (610)
Q Consensus       335 G~Y~C~a~N~~  345 (610)
                      |.|.|.+.-..
T Consensus        78 a~YyCA~~~~~   88 (112)
T d1sq2n_          78 GTYRCGLGVAG   88 (112)
T ss_dssp             EEEEEEECBTT
T ss_pred             EEEeEEEecCC
Confidence            99999876443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=63.67  Aligned_cols=89  Identities=13%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      .+|.+.+.+.......++.++|.|.+.|. |. ..|.|.+||..+...........++++.+...+.|.|..-.-.....
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            35777665433333346779999999985 43 36999999998876543333334445566777788876554334557


Q ss_pred             EEEEeecCCcc
Q psy10487        337 YTCYAENIRGN  347 (610)
Q Consensus       337 Y~C~a~N~~G~  347 (610)
                      |+|.+......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999987543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.76  E-value=5.9e-05  Score=59.42  Aligned_cols=83  Identities=22%  Similarity=0.272  Sum_probs=51.0

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      .+|.+.+.+.. ..+.++..+|.|.+.|..++  .|+|.+||..+...........++++.+...+.|.   +...+.+.
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~---~~~~~~~~   78 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLE---TVPRSGEV   78 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEE---CCCCTTCE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEee---EcCCCCCE
Confidence            35777665443 23456777899999986443  78999999988655332223344555555555554   45677789


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |+|++....
T Consensus        79 ytC~V~H~s   87 (98)
T d1d5mb1          79 YTCQVEHPS   87 (98)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=8.5e-05  Score=59.61  Aligned_cols=83  Identities=18%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|...+.....+.|++  .+..   +.........-.......   .....|+|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            4556788889999999999998766667799997  2221   111100000000000000   1124799999999999


Q ss_pred             eEEEEEeecCC
Q psy10487        335 GEYTCYAENIR  345 (610)
Q Consensus       335 G~Y~C~a~N~~  345 (610)
                      |.|.|.+.+..
T Consensus        84 a~YyCA~~~~~   94 (108)
T d1jhll_          84 AMYICQQHNEY   94 (108)
T ss_dssp             SEEEEEECSSS
T ss_pred             eEEEEeeCCCc
Confidence            99999766543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.6e-06  Score=66.63  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP  462 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp  462 (610)
                      ..+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+..|
T Consensus        56 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~~~p   98 (101)
T d1iray1          56 QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEP   98 (101)
T ss_dssp             EETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred             ccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEeCCC
Confidence            4556899999999999999999999999999999999887543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.6e-06  Score=66.08  Aligned_cols=41  Identities=12%  Similarity=-0.057  Sum_probs=36.7

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP  461 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p  461 (610)
                      ....|.|.++..+|+|.|+|.|.|..|+++..+.+.+.++|
T Consensus        61 ~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred             cceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            34569999999999999999999999999999999988754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.75  E-value=4.3e-05  Score=61.38  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++|+|.|...+.-.-.+.|++  .|....   ............+...   .....|+|.+++.+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            3445778889999999999998766556799998  222111   0000000000000000   1125899999999999


Q ss_pred             eEEEEEeecC
Q psy10487        335 GEYTCYAENI  344 (610)
Q Consensus       335 G~Y~C~a~N~  344 (610)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (107)
T d1ospl1          84 ATYFCQQYWS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             CcEEEeeccC
Confidence            9999987543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=8.7e-05  Score=58.61  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      -+|.+.+.+.. .+..|+.++|.|.+.|.-+  ..|+|.+||..+...... ....++++.+..++.|.+   ..+|.+.
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~-~~~~~~dgty~~~s~l~v---~~~~~~~   78 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DLSFSKDWSFYLLYYTEF---TPTEKDE   78 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEC-CCEECTTSCEEEEEEEEE---CCCSSCC
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccc-ceecCCCCcEEEEEEeEE---CCCCCCE
Confidence            35777665432 3467889999999999733  368999999988643322 233445555556666665   4566779


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |+|++....
T Consensus        79 ytC~V~H~s   87 (100)
T d1k5nb_          79 YACRVNHVT   87 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=3.4e-05  Score=63.02  Aligned_cols=82  Identities=26%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---ec-cCCccceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LH-NSSFDLLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~-~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      +...+..+.+.+|++++|.|.....-...+.|++  .|+.   +. ................     .....|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            4455778899999999999998876677899998  2221   11 1110000000000000     1123799999999


Q ss_pred             CCCeEEEEEeecC
Q psy10487        332 LDAGEYTCYAENI  344 (610)
Q Consensus       332 ~D~G~Y~C~a~N~  344 (610)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998764

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.7e-05  Score=61.58  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCcc-ceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFD-LLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.+.+.......++.++|.|.+.|. |. ..|.|.+||..+...... .....+.++.+...+.|.|..-.-.+...
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            5777665544444457789999999884 53 589999999988654421 12233445566777888886655555668


Q ss_pred             EEEEeecCCcce
Q psy10487        337 YTCYAENIRGNA  348 (610)
Q Consensus       337 Y~C~a~N~~G~~  348 (610)
                      |+|.+.......
T Consensus        84 ytC~V~H~~l~~   95 (105)
T d1fp5a2          84 FICRAVHEAASP   95 (105)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEEECCCCC
Confidence            999999866543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=2.8e-05  Score=63.29  Aligned_cols=80  Identities=18%  Similarity=0.261  Sum_probs=53.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc-----CCcc-------ceeeccCCceeeeeeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN-----SSFD-------LLEEEEGDALFEKSVSITLFN  328 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~-----~~~~-------~~~~~~~~~~~~~~~~L~I~~  328 (610)
                      |...|..+.+.+|++++|.|...+.....+.|+|  .|.....     ....       .......    .....|+|.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~   78 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKS----SGRSTLYIAA   78 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETT----TTEEEEEESS
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccC----CCEEEeeeec
Confidence            4556778899999999999998877667899998  2221110     0000       0000111    1234899999


Q ss_pred             cCCCCCeEEEEEeecCCc
Q psy10487        329 VTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G  346 (610)
                      ++.+|+|.|.|.+....+
T Consensus        79 ~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          79 SQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             CCGGGCEEEEEEEEESSS
T ss_pred             CCCCCCcEEeEeEecCCC
Confidence            999999999999875543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.73  E-value=6e-06  Score=64.21  Aligned_cols=58  Identities=9%  Similarity=0.101  Sum_probs=38.3

Q ss_pred             EEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      .+.|.....+......|.+++..+........|.|.+++.+|+|.|+|.|.|..|...
T Consensus        21 ~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          21 HLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             EEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeE
Confidence            3344443333322344444444444445667899999999999999999999888643

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.6e-06  Score=65.35  Aligned_cols=38  Identities=16%  Similarity=-0.003  Sum_probs=33.6

Q ss_pred             ccccceeeeeeeeccCc-ceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRH-TGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      .....|.|.+++.+|.| .|+|.|.|..|+++.++.|.|
T Consensus        53 ~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          53 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             ccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            45568999999999999 699999999999999888765

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.73  E-value=6.9e-05  Score=60.83  Aligned_cols=77  Identities=21%  Similarity=0.323  Sum_probs=51.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEec--CCCeEEEEe--CCEE----eccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLL--NGQV----LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~--~g~~----l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |...|..+.+.+|++++|.|..++.  ....+.|++  .+..    +....+.....+..    .....|+|.+++.+|+
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKG----SKSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETT----TTEEEEEECSCCGGGC
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECC----CCceeeeecccccCCc
Confidence            4566788899999999999999754  445689997  2221    11111111111111    1124899999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        79 a~YyCa~~~   87 (113)
T d1vesa_          79 GTYKCQAFY   87 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeeec
Confidence            999999854

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.73  E-value=9e-05  Score=58.40  Aligned_cols=82  Identities=24%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+.. .+..|+..+|.|.+.|.-+  ..|+|.+||..+..+........++++.+...+.|.+..   +|...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~y   80 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIY   80 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEE
Confidence            5777665432 2456788899999999733  468999999988654322233344555666666777653   455689


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        81 tC~V~H~s   88 (99)
T d1uvqa1          81 DCKVEHWG   88 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=4.1e-05  Score=61.37  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc--CCccceeeccCCce-e---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN--SSFDLLEEEEGDAL-F---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~--~~~~~~~~~~~~~~-~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|...+.....+.|++  .|.....  ...........+.. .   .....|+|.+++.+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            3456778889999999999998766666799997  3322110  00000000000000 0   1124799999999999


Q ss_pred             eEEEEEeecC
Q psy10487        335 GEYTCYAENI  344 (610)
Q Consensus       335 G~Y~C~a~N~  344 (610)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (106)
T d1i8ka_          84 GDYYCLQSFN   93 (106)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEeEecCcc
Confidence            9999986543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=6.2e-06  Score=66.97  Aligned_cols=38  Identities=11%  Similarity=-0.214  Sum_probs=35.0

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ...|.|.+++..|+|.|+|.|.|..|..++.+.|.|.+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            34799999999999999999999999999999998875

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.71  E-value=6.2e-06  Score=63.99  Aligned_cols=57  Identities=9%  Similarity=0.009  Sum_probs=37.2

Q ss_pred             EEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        394 CVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      +.|.....+......|.+++..+........|.|.+++.+|+|.|+|.|.|..|...
T Consensus        20 L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2          20 LRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             EEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEE
Confidence            344443332222234444444444444566899999999999999999999988654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00014  Score=56.69  Aligned_cols=80  Identities=21%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             CCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCc-cceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        259 CPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSF-DLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      .||.+.+..    ...++.++|.|.+.|. |.. .|+|.+||..+..... ......++++.+...+.|.+   ...|..
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~~   75 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEEQ   75 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCGG
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCCC
Confidence            366665522    2346778999999995 544 7999999999865432 22233445555555556655   445667


Q ss_pred             EEEEEeecCC
Q psy10487        336 EYTCYAENIR  345 (610)
Q Consensus       336 ~Y~C~a~N~~  345 (610)
                      .|+|++....
T Consensus        76 ~ytC~V~H~s   85 (94)
T d1de4a1          76 RYTCQVEHPG   85 (94)
T ss_dssp             GEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999998763

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.68  E-value=8e-05  Score=59.65  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.........+.|++  .|....   ............+...   .....|.|.+++.+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            3456778889999999999998777777799998  332211   1110000000000000   1135899999999999


Q ss_pred             eEEEEEeecC
Q psy10487        335 GEYTCYAENI  344 (610)
Q Consensus       335 G~Y~C~a~N~  344 (610)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (107)
T d1c5cl1          84 ADYYCLQYAS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEecCcC
Confidence            9999977543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.64  E-value=7.1e-05  Score=60.09  Aligned_cols=81  Identities=17%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++|+|.|...+.....+.|++-  +..   +.................   .....|+|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            34567788899999999999988776677999972  221   110000000000000000   1235799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1kcvl1          84 ADYYCGQSY   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEecC
Confidence            999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00026  Score=55.67  Aligned_cols=81  Identities=19%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+.. ....|+.++|.|.+.|. |. ..|+|.+||..+...... ....++++.+...+.|.+.   .++.+.|
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~-~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMS-DMSFSKDWSFYILAHTEFT---PTETDTY   78 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEE-EEEECTTCCEEEEEEEEEC---CCSSCCE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEEC-ceeECCCCCEEEEEEeEec---CcCCCEE
Confidence            5777665432 24568889999999996 33 478999999988654432 2233445556666677664   4566789


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        79 tC~V~H~s   86 (99)
T d1lk2b_          79 ACRVKHDS   86 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=1.8e-06  Score=67.81  Aligned_cols=36  Identities=19%  Similarity=0.033  Sum_probs=29.0

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .++.|.|.+++.+|+|.|+|.|.|.+|.......+.
T Consensus        54 ~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~   89 (92)
T d1epfa2          54 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ   89 (92)
T ss_dssp             TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             eeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEE
Confidence            445799999999999999999999887665544443

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.63  E-value=4.1e-05  Score=62.58  Aligned_cols=85  Identities=15%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-CCCeEEEEe--CCE-E--ec-cCCccceee--ccCCcee-----eeeeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLL--NGQ-V--LH-NSSFDLLEE--EEGDALF-----EKSVSITLFN  328 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~--~g~-~--l~-~~~~~~~~~--~~~~~~~-----~~~~~L~I~~  328 (610)
                      +...+..+.+.+|++++|.|...+. ....+.|++  .+. +  +. .........  ..++...     .....|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            4556778889999999999998644 567899997  222 1  11 111000000  0011111     1124799999


Q ss_pred             cCCCCCeEEEEEeecCCcc
Q psy10487        329 VTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ++.+|+|.|.|.+....+.
T Consensus        83 ~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             CCGGGCEEEEEEEECTTTT
T ss_pred             ccccccccceeeEecCCCC
Confidence            9999999999987765443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.6e-06  Score=69.87  Aligned_cols=36  Identities=14%  Similarity=0.011  Sum_probs=30.2

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceee-eeeccccc
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAME  459 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~  459 (610)
                      .|.|.+++.+|+|.|+|.|.|..|..+. ...+.|.+
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            5999999999999999999999998654 56666554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=59.05  Aligned_cols=83  Identities=14%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-CCCeEEEEe--CCEEec----cCCccceeeccCCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLL--NGQVLH----NSSFDLLEEEEGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~--~g~~l~----~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~  330 (610)
                      +...|..+.+.+|++++|.|...+. ....+.|++  .|....    ..........+++...     .....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            5567888999999999999998653 446789998  232110    0000000000111011     112479999999


Q ss_pred             CCCCeEEEEEeecCC
Q psy10487        331 DLDAGEYTCYAENIR  345 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~  345 (610)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          82 RNDSGIYLCGAISLH   96 (114)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999886543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.62  E-value=4.8e-05  Score=62.06  Aligned_cols=81  Identities=19%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---ec-cC-CccceeeccCCc-e---eeeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LH-NS-SFDLLEEEEGDA-L---FEKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~-~~-~~~~~~~~~~~~-~---~~~~~~L~I~~v~~  331 (610)
                      |...+..+.+.+|++++|.|.........+.|++  .|..   +. .. ............ .   ......|+|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            4455677889999999999998876677889997  2221   11 00 000000000000 0   01124799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|+|.|.|.+..
T Consensus        83 ~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 SDSAVYFCAVSG   94 (115)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceecccccC
Confidence            999999998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=0.00011  Score=58.89  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             eeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCCeE
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~  336 (610)
                      ..|..+.+.+|++++|.|...+.-...+.|++  .|..   +.............+...   .....|.|.+++.+|+|.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            34556888999999999999766667799997  2221   111110000000011111   112489999999999999


Q ss_pred             EEEEee
Q psy10487        337 YTCYAE  342 (610)
Q Consensus       337 Y~C~a~  342 (610)
                      |.|.+.
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.61  E-value=0.00012  Score=58.60  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++|+|.|.....-...+.|++  .|..   +.-...............   .....|+|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            4566888899999999999998765567899998  2221   111100000000000001   1234799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.60  E-value=8.5e-05  Score=59.61  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc--C-CccceeeccCCce---eeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN--S-SFDLLEEEEGDAL---FEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~--~-~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.....-...+.|++  .|..+..  . .............   ......|+|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            4456788899999999999998766667799997  2322110  0 0000000000000   01235899999999999


Q ss_pred             eEEEEEeecC
Q psy10487        335 GEYTCYAENI  344 (610)
Q Consensus       335 G~Y~C~a~N~  344 (610)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (107)
T d1j1pl_          84 GMYFCQQANS   93 (107)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEcCCC
Confidence            9999976543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.4e-06  Score=71.50  Aligned_cols=37  Identities=19%  Similarity=0.079  Sum_probs=33.4

Q ss_pred             cceeeeeeeecc-CcceeeeecCCCcceeeeeeccccc
Q psy10487        423 KKLLDVSITTTD-RHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       423 ~~L~i~~v~~~D-~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ..|.|.++..+| +|.|+|.|+|..|+++..++|.|..
T Consensus        69 s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          69 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence            469999999999 6999999999999999999998764

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00012  Score=58.45  Aligned_cols=90  Identities=24%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             CCceeeeecc--eEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487        260 PPNVTIKESM--VIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       260 ~P~i~~~~~~--~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  335 (610)
                      ||.+.+....  .....+..++|.|.+.|. |.. .|+|.++|..+......... ...++.+...+.|.|..-.-....
T Consensus         4 pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~~~y~~~S~L~v~~~~w~~~~   82 (104)
T d1o0va1           4 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST-TQEGELASTQSELTLSQKHWLSDR   82 (104)
T ss_dssp             CCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEE-EEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeE-eCCCCeEEEEEEEEECHHHcCCCC
Confidence            5666554322  122445679999999984 554 68999999998754332222 223345666778888765544566


Q ss_pred             EEEEEeecCCcceeE
Q psy10487        336 EYTCYAENIRGNASG  350 (610)
Q Consensus       336 ~Y~C~a~N~~G~~~~  350 (610)
                      .|+|++.........
T Consensus        83 ~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          83 TYTCQVTYQGHTFED   97 (104)
T ss_dssp             CEEEEEEETTEEEEE
T ss_pred             EEEEEEEECCEeEEe
Confidence            799999987654433

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.57  E-value=0.00012  Score=58.64  Aligned_cols=81  Identities=20%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---ccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---HNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.....-...+.|++  .|...   .............+...   .....|+|.+++.+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            3455677889999999999998766566799997  22221   11100000000001000   1225799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1mexl1          84 AEYFCQQYN   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eeEEEeECC
Confidence            999997654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.57  E-value=0.00014  Score=56.98  Aligned_cols=82  Identities=23%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+... ...|+..+|.|.+.|.-+  ..|+|.+||..+...........++++.+...+.|.+   ...+...|
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~y   77 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVY   77 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEE
Confidence            46666654332 345677899999998644  4789999998876544333334455556666666665   45566789


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        78 tC~V~H~s   85 (97)
T d1uvqb1          78 TCHVEHPS   85 (97)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.1e-05  Score=61.91  Aligned_cols=35  Identities=17%  Similarity=0.065  Sum_probs=30.6

Q ss_pred             eeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        425 LLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       425 L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      +.+.+++.+|+|.|+|+|.|..|+.+..+.|.|..
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEEC
Confidence            45678899999999999999999999888887764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.56  E-value=3.3e-05  Score=60.86  Aligned_cols=37  Identities=16%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceee-eeeccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLA  457 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v  457 (610)
                      ....|.|.+++.+|+|.|+|.|.|..|..+. +..|.|
T Consensus        59 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             CCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            4457999999999999999999999998654 566665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=2.3e-05  Score=61.69  Aligned_cols=42  Identities=12%  Similarity=-0.039  Sum_probs=33.7

Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCcceee-eeecccccC
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAMEQ  460 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~~  460 (610)
                      ....+.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+
T Consensus        52 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          52 SQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD   94 (96)
T ss_dssp             ETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCS
T ss_pred             cCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcC
Confidence            345568999999999999999999999998754 466666644

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=3.3e-06  Score=68.66  Aligned_cols=39  Identities=15%  Similarity=0.053  Sum_probs=31.1

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeee--eecccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELI--EQSLAM  458 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~v~  458 (610)
                      .....|.|.+++.+|+|.|+|.|+|..|+...+  .++.|+
T Consensus        64 ~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          64 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            445689999999999999999999999987653  334444

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.54  E-value=0.00011  Score=59.09  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=51.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCce---eeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDAL---FEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.........+.|++  .+..   +................   ......|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            3456788889999999999998766667799998  2221   11111000000000000   01235899999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 a~YyCA~~~   92 (109)
T d1mqkl_          84 GSYYCQHHY   92 (109)
T ss_dssp             EEEEEEECS
T ss_pred             eeEEEeeeC
Confidence            999998753

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3e-05  Score=59.49  Aligned_cols=63  Identities=11%  Similarity=-0.099  Sum_probs=37.5

Q ss_pred             EEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceee-eeecc
Q psy10487        393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSL  456 (610)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~  456 (610)
                      .+.|...+.+.+....|.+++..+.. .....+.+.....+|+|.|+|.|.|..|.... .+.+.
T Consensus        20 ~l~C~~~g~P~P~~i~W~k~g~~i~~-~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~   83 (85)
T d1rhfa2          20 QLSCEAVGPPEPVTIVWWRGTTKIGG-PAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVH   83 (85)
T ss_dssp             EEEEEEECSSSCCEEEEEETTEECSC-SEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEecCCcceEEEEEECCEECCC-CCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEE
Confidence            44565555544322344444333322 23345667777778999999999999996533 34443

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.51  E-value=0.0001  Score=59.05  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---ccCCccceeeccCC---ceeeeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---HNSSFDLLEEEEGD---ALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++|+|.|.........+.|++  .|..+   ..............   ........|+|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            4456778889999999999998777777799997  23221   10000000000000   0011235899999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d3cx5k1          84 ATYFCQHHI   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEeeeCC
Confidence            999997643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.51  E-value=0.00014  Score=58.53  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCcee-----eeeeEEEEEecCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDALF-----EKSVSITLFNVTDL  332 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~  332 (610)
                      |...|..+.+.+|++++|.|...+.-...+.|++-  |....   ................     .....|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            34456778889999999999987655567999972  22111   0000000000000000     11358999999999


Q ss_pred             CCeEEEEEee
Q psy10487        333 DAGEYTCYAE  342 (610)
Q Consensus       333 D~G~Y~C~a~  342 (610)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (110)
T d1u3ha1          82 DSATYFCAAS   91 (110)
T ss_dssp             SCSEEEECCE
T ss_pred             CceeEeeeec
Confidence            9999999875

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00018  Score=57.68  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             ecceEeecCceEEEEEEEEec--CCCeEEEEeC--CEE---e-ccCCccceeeccCCcee-----eeeeEEEEEecCCCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD--PEPTILWLLN--GQV---L-HNSSFDLLEEEEGDALF-----EKSVSITLFNVTDLD  333 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~--g~~---l-~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D  333 (610)
                      ++.+.+.+|++++|.|...+.  ....+.|+|.  +..   + .......... .++...     .....|.|.+++.+|
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~-~~r~~~~~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAW-TSRFTIWDDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBC-STTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccce-eeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence            345678899999999986533  2345789872  211   1 1111000000 000000     123589999999999


Q ss_pred             CeEEEEEeecCCc
Q psy10487        334 AGEYTCYAENIRG  346 (610)
Q Consensus       334 ~G~Y~C~a~N~~G  346 (610)
                      +|.|.|.+.....
T Consensus        82 sG~Y~C~v~~~~~   94 (108)
T d1hkfa_          82 SGHYWCRIYRPSD   94 (108)
T ss_dssp             CEEEEEEEECTTT
T ss_pred             CEEEEEEEecCCC
Confidence            9999998875443

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.00023  Score=54.83  Aligned_cols=80  Identities=24%  Similarity=0.352  Sum_probs=53.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+..   ....++.++|.|.+.|..+.  .|+|.++|..+...........++++.+...+.|.|..   .+...|
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~y   76 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYY   76 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTC
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEE
Confidence            45555422   12345689999999996544  57999999988765443334455666667777887753   334479


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        77 tC~V~H~~   84 (89)
T d2mhaa1          77 TCHVYHQG   84 (89)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99997643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.49  E-value=8.3e-05  Score=60.55  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             eeeecceEeecCceEEEEEEEEec-CCCeEEEEeC-----CEEe---c-cCCccceee----ccCCcee-----eeeeEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN-----GQVL---H-NSSFDLLEE----EEGDALF-----EKSVSI  324 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~-----g~~l---~-~~~~~~~~~----~~~~~~~-----~~~~~L  324 (610)
                      ...|..+.+.+|++++|.|.+.+. ....+.|++-     ++.+   . .........    .......     .....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            456788899999999999998763 4567999973     2211   0 000000000    0000000     123479


Q ss_pred             EEEecCCCCCeEEEEEeec
Q psy10487        325 TLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       325 ~I~~v~~~D~G~Y~C~a~N  343 (610)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=9.4e-06  Score=63.62  Aligned_cols=79  Identities=14%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             cccccccCCcceeehhhhHHHHHHHHHhhee-EEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCccee
Q psy10487        361 LATTLSKTDSWYMLVLGISVCVVSVIVSIGM-SFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGS  439 (610)
Q Consensus       361 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  439 (610)
                      ..|.+...+.......+..+.+.|.+.+... ..+.|.+.+.+..        .........+++|.|.+++.+|+|.|+
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~--------~~~~~~~~~~~~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG--------SHPSRWAGMGRRLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSS--------CCCEEEEEESSEEEECSCCGGGCEEEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccc--------ceeeEEecCCCEEEECCCChhcCEEEE
Confidence            3455555555555544444444444443322 1233443332221        111122345668999999999999999


Q ss_pred             eeecCCCc
Q psy10487        440 CEALGSQP  447 (610)
Q Consensus       440 C~A~N~~G  447 (610)
                      |.|.|..+
T Consensus        77 C~a~n~~~   84 (93)
T d1n26a1          77 CYRAGRPA   84 (93)
T ss_dssp             EESSSSCS
T ss_pred             EEECCccc
Confidence            99998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.49  E-value=0.00024  Score=56.88  Aligned_cols=81  Identities=21%  Similarity=0.298  Sum_probs=50.9

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.........+.|++-  +..   +.................   .....|.|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            34567788899999999999987766777899972  221   110000000000000000   1225899999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.6e-05  Score=60.05  Aligned_cols=79  Identities=18%  Similarity=0.310  Sum_probs=48.8

Q ss_pred             ceEeecCceEEEEEEEEecC----CCeEEEEeCCEEeccCCccceeec---cCCceee--eeeEEEEEecCCCCCeEEEE
Q psy10487        269 MVIREAGGNVTMSCYVYGDP----EPTILWLLNGQVLHNSSFDLLEEE---EGDALFE--KSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~g~~l~~~~~~~~~~~---~~~~~~~--~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      .+++..|++++|.|......    .-.+.|.+++..+...........   .++....  ...+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            46788999999999765322    235789888766532111100000   0000001  12389999999999999999


Q ss_pred             EeecCCcc
Q psy10487        340 YAENIRGN  347 (610)
Q Consensus       340 ~a~N~~G~  347 (610)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            98765443

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00024  Score=56.70  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCCe
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAG  335 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G  335 (610)
                      ...|..+.+.+|++++|.|...+.-...+.|++-  |+.   +.............+...   .....|.|.+++.+|+|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            3567888999999999999987655667999982  221   111000000000000000   12247999999999999


Q ss_pred             EEEEEeec
Q psy10487        336 EYTCYAEN  343 (610)
Q Consensus       336 ~Y~C~a~N  343 (610)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00023  Score=58.10  Aligned_cols=83  Identities=24%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec--c--CCccceeec----cCCcee----eeeeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH--N--SSFDLLEEE----EGDALF----EKSVSITLFN  328 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~--~--~~~~~~~~~----~~~~~~----~~~~~L~I~~  328 (610)
                      |...|..+.+.+|++++|.|...+.....+.|++  .|+.+.  .  .........    ......    .....|+|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            4556777889999999999998776677899998  333211  0  000000000    001011    1134799999


Q ss_pred             cCCCCCeEEEEEeecCC
Q psy10487        329 VTDLDAGEYTCYAENIR  345 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~  345 (610)
                      ++.+|+|.|.|.+.-..
T Consensus        84 ~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CCGGGCEEEEEEEECSS
T ss_pred             cccccCceEEEEEecCC
Confidence            99999999999886543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.47  E-value=0.00025  Score=56.96  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|...+.-...+.|++  .+..   +.............+...   .....|+|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            4456778889999999999998776667789998  2221   110000000000001000   1124799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.9e-05  Score=59.81  Aligned_cols=37  Identities=14%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ..++.|.|.+++.+|+|.|+|.|.|..|..+....+.
T Consensus        47 ~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~   83 (92)
T d1olza1          47 MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA   83 (92)
T ss_dssp             TTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred             ceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEE
Confidence            3456799999999999999999999999876655443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00013  Score=59.25  Aligned_cols=82  Identities=21%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             ceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeC--CE--E----eccCCccceeec---cCCcee---eeeeEEEE
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN--GQ--V----LHNSSFDLLEEE---EGDALF---EKSVSITL  326 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~--g~--~----l~~~~~~~~~~~---~~~~~~---~~~~~L~I  326 (610)
                      .+...|..+++.+|++++|.|...+. ....+.|++-  +.  .    +...........   ..+...   .....|+|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            35677888999999999999998654 3456899982  11  1    111110000000   001001   11247999


Q ss_pred             EecCCCCCeEEEEEeec
Q psy10487        327 FNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N  343 (610)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999998763

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.44  E-value=0.00012  Score=59.39  Aligned_cols=84  Identities=21%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             eeeeecceEeecCceEEEEEEEEe-cCCCeEEEEe--CCEEec----cCCccceeeccCCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLL--NGQVLH----NSSFDLLEEEEGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~--~g~~l~----~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~  330 (610)
                      |...+..+.+.+|++|+|.|.... .....+.|++  .+....    ............+...     .....|+|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            445677888999999999998653 3456689998  232211    0000000000011001     113489999999


Q ss_pred             CCCCeEEEEEeecCCc
Q psy10487        331 DLDAGEYTCYAENIRG  346 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G  346 (610)
                      .+|+|.|.|.+....+
T Consensus        83 ~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGGCEEEEEEEECSBT
T ss_pred             cccCCCceEeCCCCCC
Confidence            9999999998766544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=7.7e-06  Score=65.33  Aligned_cols=36  Identities=11%  Similarity=-0.072  Sum_probs=30.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  456 (610)
                      .+++|.|.+++.+|+|.|+|.|+|..|.......+.
T Consensus        63 ~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~   98 (102)
T d1f97a1          63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH   98 (102)
T ss_dssp             ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEE
T ss_pred             cCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEE
Confidence            456799999999999999999999999877765554

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00013  Score=58.63  Aligned_cols=88  Identities=13%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             ceEeecCceEEEEEEEEecCC---Ce--EEEEeCCEEe-cc---CCccceee-ccCCce---eeeeeEEEEEecCCCCCe
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE---PT--ILWLLNGQVL-HN---SSFDLLEE-EEGDAL---FEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~---p~--v~W~~~g~~l-~~---~~~~~~~~-~~~~~~---~~~~~~L~I~~v~~~D~G  335 (610)
                      .+.+..|++++|.|.....+.   ..  +.|.++.... ..   ........ ......   .....+|+|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            356788999999998864332   22  3444543322 11   00000000 000000   012247999999999999


Q ss_pred             EEEEEeecC--Ccce---eEEEEEEc
Q psy10487        336 EYTCYAENI--RGNA---SGEISLDL  356 (610)
Q Consensus       336 ~Y~C~a~N~--~G~~---~~~~~L~V  356 (610)
                      .|.|.+...  .|..   ...+.|.|
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEE
Confidence            999998643  3332   33455554

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.41  E-value=0.0003  Score=56.70  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec----cCCccceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH----NSSFDLLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~----~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      |...|..+.+.+|++++|.|...+.....+.|++  .|....    ......... .+....     .....|.|.+++.
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNA-DGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEE-ETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceecccc-CCcceEEEEccCCEEEEEECCCcc
Confidence            4455677888999999999998777777899998  232111    000000000 000000     1246899999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=8.1e-06  Score=65.53  Aligned_cols=36  Identities=14%  Similarity=-0.044  Sum_probs=31.0

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      +..|.|.+++.+|+|.|+|.|.|..|.+...+.+.+
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             CceEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            457999999999999999999999999877665543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=8.6e-05  Score=58.16  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=51.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|.. .+..|++|+|.|+......-.+.|+|+|.......    . ..     .......|.+++.+|+|.|.|
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~----~-~~-----~~~a~F~l~~v~~~~~G~Y~C   73 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH----Q-SG-----EHPANFSLGPVDLNVSGIYRC   73 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE----E-EC-----SSSEEEECCSCCGGGCEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE----c-CC-----CcccEEEEeccccccCcEEEE
Confidence            4777776654 68899999999986333444688999885322211    0 01     112478999999999999999


Q ss_pred             EeecC
Q psy10487        340 YAENI  344 (610)
Q Consensus       340 ~a~N~  344 (610)
                      .....
T Consensus        74 ~y~~~   78 (96)
T d1ucta2          74 YGWYN   78 (96)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            87543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.40  E-value=0.00029  Score=56.95  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec--cCCccceeeccC-----CceeeeeeEEEEEecCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH--NSSFDLLEEEEG-----DALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~--~~~~~~~~~~~~-----~~~~~~~~~L~I~~v~~~D  333 (610)
                      |...|..+.+.+|++++|.|...+ -...+.|++  .+....  ............     .........|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            456678889999999999999765 345799998  222111  000000000000     0000123579999999999


Q ss_pred             CeEEEEEeecCCc
Q psy10487        334 AGEYTCYAENIRG  346 (610)
Q Consensus       334 ~G~Y~C~a~N~~G  346 (610)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (113)
T d1h5ba_          83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEecCCCC
Confidence            9999999876544

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00026  Score=56.60  Aligned_cols=88  Identities=19%  Similarity=0.388  Sum_probs=57.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCcc-ceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFD-LLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.+.+.......++.++|.|.+.|. |. ..|+|.+||..+...... ......+++.+...+.|.|..-.-.....
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            4666655432222246679999999885 44 479999999987654321 12233445566777888887665444668


Q ss_pred             EEEEeecCCcc
Q psy10487        337 YTCYAENIRGN  347 (610)
Q Consensus       337 Y~C~a~N~~G~  347 (610)
                      |+|.+......
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1mjul2          85 YTCEATHKTST   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999876543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.40  E-value=0.00019  Score=56.99  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeeccCCc---eeeeeeEEEEEecCCCCCeEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEEGDA---LFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |..+.+.+|++|+|.|...+.....+.|++  .|....   ..............   .......|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            346778899999999988766666789998  222211   00000000000000   0012358999999999999999


Q ss_pred             EEeecC
Q psy10487        339 CYAENI  344 (610)
Q Consensus       339 C~a~N~  344 (610)
                      |.+...
T Consensus        85 CA~~~~   90 (103)
T d8faba1          85 CQAWDN   90 (103)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            976543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.39  E-value=0.00016  Score=58.71  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec----cCCccceeeccC-Cc---eeeeeeEEEEEecCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH----NSSFDLLEEEEG-DA---LFEKSVSITLFNVTDL  332 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~----~~~~~~~~~~~~-~~---~~~~~~~L~I~~v~~~  332 (610)
                      +...|..+.+.+|++++|.|...+. ...+.|++  .|..+.    ............ ..   .......|+|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            3455778889999999999997654 34799998  222110    000000000000 00   0022358999999999


Q ss_pred             CCeEEEEEeecCCcce--eEEEEEEc
Q psy10487        333 DAGEYTCYAENIRGNA--SGEISLDL  356 (610)
Q Consensus       333 D~G~Y~C~a~N~~G~~--~~~~~L~V  356 (610)
                      |+|.|.|.+....+..  -.-..|.|
T Consensus        82 Dsa~YyCa~~~~~~~~~FG~GT~LtV  107 (115)
T d1ogad1          82 DTGLYLCAGAGSQGNLIFGKGTKLSV  107 (115)
T ss_dssp             GCEEEEEEEECTTSSEEECCCEEEEE
T ss_pred             ceeeEcccccCCCCCcEECCCEEEEE
Confidence            9999999887554432  12345555

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=9.3e-06  Score=65.29  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=29.9

Q ss_pred             ccccccceeeeeeeeccCcceeeeecCCCcceeee
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI  452 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~  452 (610)
                      ....++.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        56 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          56 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             eecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            33556789999999999999999999999987654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=6.1e-05  Score=59.26  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=30.4

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcce-eeeeecccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDM-ELIEQSLAM  458 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~  458 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|+. +..+.|.|+
T Consensus        59 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          59 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            4579999999999999999999999974 345666554

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00046  Score=53.73  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=52.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+.+....   ..++.++|.|.+.|..+.  .|+|.+||..+...........++++.+...+.|.+.   ..+...|
T Consensus         3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~y   76 (95)
T d1k5na1           3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRY   76 (95)
T ss_dssp             CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGE
T ss_pred             CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEE
Confidence            5666553221   235679999999997554  5799999998876544333344555555666666664   3445579


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        77 tC~V~H~~   84 (95)
T d1k5na1          77 TCHVQHEG   84 (95)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECc
Confidence            99998753

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.37  E-value=3e-06  Score=67.19  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceee-eeec
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQS  455 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l  455 (610)
                      .+..|+|..+..+|+|.|+|+|.|..|++.. .+.|
T Consensus        60 ~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             eeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            3446777888999999999999999998643 3443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.37  E-value=3.9e-05  Score=61.34  Aligned_cols=88  Identities=16%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+.+.+.......++.++|.|.+.|. |. ..|.|.+||..+......... ...++.+...+.|.|..-.-.+...|
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~~tys~~S~l~v~~~~w~~~~~y   83 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP-SKQGQNYMTSSYLSLTADQWKSHNRV   83 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC-BCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccc-cCCCceEEEEEEEEEcHHHcCCCCEE
Confidence            4555554322222246678999999985 44 379999999988754332222 22233455667777776665566789


Q ss_pred             EEEeecCCcce
Q psy10487        338 TCYAENIRGNA  348 (610)
Q Consensus       338 ~C~a~N~~G~~  348 (610)
                      +|.+.......
T Consensus        84 tC~V~H~~~~~   94 (104)
T d1nfde2          84 SCQVTHEGETV   94 (104)
T ss_dssp             EEEEECTTTTC
T ss_pred             EEEEEECCCcE
Confidence            99999876543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00015  Score=58.21  Aligned_cols=86  Identities=17%  Similarity=0.280  Sum_probs=58.0

Q ss_pred             CCceeeee-cceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccc----eeeccCCceeeeeeEEEEEecCCC
Q psy10487        260 PPNVTIKE-SMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDL----LEEEEGDALFEKSVSITLFNVTDL  332 (610)
Q Consensus       260 ~P~i~~~~-~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~  332 (610)
                      +|.+.+.+ .......++.++|.|.+.|. |.. .|.|++||..+.......    .....+++.+...+.|+|..-.-.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            56666543 33445568899999999985 543 799999999887653211    111234555667778887765544


Q ss_pred             CCeEEEEEeecCC
Q psy10487        333 DAGEYTCYAENIR  345 (610)
Q Consensus       333 D~G~Y~C~a~N~~  345 (610)
                      ....|+|.+....
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            5668999998754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.00015  Score=59.30  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCCe
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAG  335 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G  335 (610)
                      ...|..+.+.+|++++|.|...+.-...+.|++-  +..   +.................   .....|.|.+++.+|+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA   84 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCe
Confidence            3456777889999999999887655567999982  221   111110000000000000   11247999999999999


Q ss_pred             EEEEEeec
Q psy10487        336 EYTCYAEN  343 (610)
Q Consensus       336 ~Y~C~a~N  343 (610)
                      .|.|.+..
T Consensus        85 vYyCa~~~   92 (119)
T d1f3rb2          85 TYFCYQYN   92 (119)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99998754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00013  Score=59.97  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=46.0

Q ss_pred             ecceEeecCceEEEEEEEEec--C-----CCeEEEEeCCEEeccCCc------cceeecc--CCce-----eeeeeEEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD--P-----EPTILWLLNGQVLHNSSF------DLLEEEE--GDAL-----FEKSVSITL  326 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~--P-----~p~v~W~~~g~~l~~~~~------~~~~~~~--~~~~-----~~~~~~L~I  326 (610)
                      +..+++.+|++|+|.|.....  +     ...+.|++....-.....      .......  ++..     .....+|+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            567889999999999997521  1     135789885332111000      0000000  0000     012358999


Q ss_pred             EecCCCCCeEEEEEeecC
Q psy10487        327 FNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.0005  Score=54.56  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec--cCCccceee-ccCCcee---eeeeEEEEEecCCCCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH--NSSFDLLEE-EEGDALF---EKSVSITLFNVTDLDA  334 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~--~~~~~~~~~-~~~~~~~---~~~~~L~I~~v~~~D~  334 (610)
                      +...|..+.+.+|++++|.|.... ....+.|++-  +....  ......... .......   .....|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            345678888999999999998654 3445899972  21110  000000000 0000000   1224799999999999


Q ss_pred             eEEEEEee
Q psy10487        335 GEYTCYAE  342 (610)
Q Consensus       335 G~Y~C~a~  342 (610)
                      |.|.|.+.
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.31  E-value=0.00027  Score=56.62  Aligned_cols=79  Identities=18%  Similarity=0.229  Sum_probs=48.7

Q ss_pred             eeeecceEeecCceEEEEEEEEec-CCCeEEEEeC--CEE---eccCCccceeeccCCce----eeeeeEEEEEecCCCC
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN--GQV---LHNSSFDLLEEEEGDAL----FEKSVSITLFNVTDLD  333 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D  333 (610)
                      ...|..+.+.+|++++|.|...+. ....+.|++-  |..   +..... .......+..    ......|+|.+++.+|
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~-~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGAS-SRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTT-BCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeec-ccccCCccceeeecCCCEEEEEehHheecc
Confidence            345777889999999999987644 3456899982  321   111100 0000000000    0112479999999999


Q ss_pred             CeEEEEEeec
Q psy10487        334 AGEYTCYAEN  343 (610)
Q Consensus       334 ~G~Y~C~a~N  343 (610)
                      +|.|.|.+.+
T Consensus        84 sa~YyCa~~~   93 (108)
T d2fx7l1          84 FAVYYCQQYG   93 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             cEEEeeecCC
Confidence            9999998753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00066  Score=52.30  Aligned_cols=78  Identities=21%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+.+....   ..++.++|.|.+.|. |. ..|+|.+||..+.....  ....++++.+...+.|.+.   ..|...|
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~--~~~~~~dgty~~~S~l~v~---~~~~~~y   74 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC--STGPNGDGSFHAWSLLEVK---RGDEHHY   74 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE--EEEECSSSCEEEEEEEEEE---TTCGGGE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCc--cceecCCCCEeEEEEEEEC---CCCCCEE
Confidence            5666653321   234578999999996 54 37999999988754432  2334555666777788875   3455689


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        75 tC~V~H~s   82 (91)
T d3frua1          75 QCQVEHEG   82 (91)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=0.00011  Score=64.11  Aligned_cols=68  Identities=10%  Similarity=0.004  Sum_probs=32.8

Q ss_pred             hcCCCCCcEEEccCCCCCCCC----cccccCCCCCcEEEeeCccccccC----cCcCCCCCCccEEEccCcccccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLH----QDTFLGNDRLKVLYLNGNPITELR----AGQFPKLPYLKTIELQHCQIHSV  168 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~  168 (610)
                      +.....|++|+|++|.+..-.    ...+...+.|+.|+|++|.+..-.    ..++...+.|+.|+|++|++..+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            445555666666666554211    122333455555555555554321    11234445566666665554443

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.26  E-value=0.002  Score=50.72  Aligned_cols=82  Identities=12%  Similarity=0.096  Sum_probs=54.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .|.+.+.+.. .++.|+..+|.|.+.|.-+  ..|.|.+||..+..... .....++++.+...+.|.|.   .+|...|
T Consensus         4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~-~~~~~~~dgty~~~S~L~v~---~~~~~~y   78 (103)
T d1hdma1           4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGP-TFVSAVDGLSFQAFSYLNFT---PEPSDIF   78 (103)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCC-EEEEEETTTEEEEEEEEEEC---CCTTCCE
T ss_pred             CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEe-ceEEeCCCCcEEEEEEEEEe---cCCCCEE
Confidence            4566554422 2456888899999999643  46899999998654332 23333455566777778764   3455679


Q ss_pred             EEEeecCCc
Q psy10487        338 TCYAENIRG  346 (610)
Q Consensus       338 ~C~a~N~~G  346 (610)
                      +|++....-
T Consensus        79 tC~V~H~~l   87 (103)
T d1hdma1          79 SCIVTHEPD   87 (103)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEeCCC
Confidence            999998743

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.26  E-value=0.00049  Score=53.67  Aligned_cols=80  Identities=14%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+......  ...++.++|.|.+.|. |.. .|+|.+|+..+...... ....++++.+...+.|.|..   +|...|
T Consensus         3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~-~~~~~~dgty~~~S~L~v~~---~~~~~y   76 (96)
T d2h26a1           3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLG-DILPNANWTWYLRATLDVAD---GEAAGL   76 (96)
T ss_dssp             CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEEC-CCEECTTSCEEEEEEEEEEG---GGCTTE
T ss_pred             CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeC-ccEeCCCCcEEEEEEEEEeC---ccCCEE
Confidence            4555554332  2345689999999985 554 79999999877554322 23345566677788888864   345579


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        77 tC~V~H~s   84 (96)
T d2h26a1          77 SCRVKHSS   84 (96)
T ss_dssp             EEEEEEGG
T ss_pred             EEEEEeCC
Confidence            99998754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.26  E-value=0.00044  Score=53.78  Aligned_cols=69  Identities=16%  Similarity=0.315  Sum_probs=43.3

Q ss_pred             CceEEEEEEEEecCCCeEEEEe--CCEE---eccCCccceeeccCCcee-----eeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        275 GGNVTMSCYVYGDPEPTILWLL--NGQV---LHNSSFDLLEEEEGDALF-----EKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      |++++|.|.........+.|++  .+..   +.... .......++...     .....|+|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~-~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIY-SNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEC-SSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeee-eeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999998877778899998  2211   11000 000111111000     11358999999999999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.26  E-value=0.00021  Score=58.07  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=51.0

Q ss_pred             eeeeecceEeecCceEEEEEEEE-ecCCCeEEEEe--CCEEec----cCCccceeeccCCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLL--NGQVLH----NSSFDLLEEEEGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~--~g~~l~----~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~  330 (610)
                      |...+..+.+.+|++|+|.|... +.....+.|++  .+....    ...........++...     .....|+|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            45567788999999999999875 34456789998  222111    0000000000011111     112479999999


Q ss_pred             CCCCeEEEEEeecCC
Q psy10487        331 DLDAGEYTCYAENIR  345 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~  345 (610)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999876543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00056  Score=54.58  Aligned_cols=88  Identities=17%  Similarity=0.293  Sum_probs=57.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccce-eeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLL-EEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.+.+.......++.++|.|.+.|. |. ..|+|.+||..+........ .....++.+...+.|.|..-.-.....
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            5666654432222346789999999985 54 47999999998765443221 223345566777888887655444558


Q ss_pred             EEEEeecCCcc
Q psy10487        337 YTCYAENIRGN  347 (610)
Q Consensus       337 Y~C~a~N~~G~  347 (610)
                      |+|++......
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1c5cl2          85 YACEVTHQGLS   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999986543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9.7e-05  Score=57.21  Aligned_cols=28  Identities=14%  Similarity=-0.018  Sum_probs=25.3

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus        53 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1          53 IGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             EEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             eeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            3479999999999999999999999974

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.24  E-value=0.00023  Score=57.22  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=46.5

Q ss_pred             ecceEeecCceEEEEEEEEec-CCCeEEEEe--CCEEec---c-CCc------cceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD-PEPTILWLL--NGQVLH---N-SSF------DLLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~--~g~~l~---~-~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      |..+.+.+|++++|.|...+. ....+.|++  .|....   . ...      ........    .....|.|.+++.+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D   80 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITED----RKSSTLILPHATLRD   80 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTT----CSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeeccc----CCeeeehhcccccCC
Confidence            446788999999999987543 445689998  232111   0 000      00001111    123589999999999


Q ss_pred             CeEEEEEeec
Q psy10487        334 AGEYTCYAEN  343 (610)
Q Consensus       334 ~G~Y~C~a~N  343 (610)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (110)
T d2esvd1          81 TAVYYCIVVR   90 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEEEeC
Confidence            9999998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.24  E-value=0.00072  Score=54.22  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---c-cCCccceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---H-NSSFDLLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~-~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      |...+..+.+.+|++++|.|.....-...+.|++  .|..+   . ..... ..........     .....|+|.+++.
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~-~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDK-EKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTT-CEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeec-ccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            5566778899999999999998765556799998  22211   0 00000 0000000000     1134899999999


Q ss_pred             CCCeEEEEEeecC
Q psy10487        332 LDAGEYTCYAENI  344 (610)
Q Consensus       332 ~D~G~Y~C~a~N~  344 (610)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          82 SDSAVYYCALSGG   94 (110)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCcccceeecCC
Confidence            9999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00042  Score=56.01  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             eecceEeecCceEEEEEEEEe---cC---CCeEEEEeCCE----EeccCCccceeecc--CCce-----eeeeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYG---DP---EPTILWLLNGQ----VLHNSSFDLLEEEE--GDAL-----FEKSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g---~P---~p~v~W~~~g~----~l~~~~~~~~~~~~--~~~~-----~~~~~~L~I~~  328 (610)
                      .|..+.+.+|+.|+|.|....   .+   .-.+.|++.+.    .+............  ++..     .....+|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            366788999999999999862   11   12356776321    11111100000000  0000     01234799999


Q ss_pred             cCCCCCeEEEEEeecCCc
Q psy10487        329 VTDLDAGEYTCYAENIRG  346 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~G  346 (610)
                      ++.+|+|.|.|.++...+
T Consensus        86 v~~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISDS  103 (118)
T ss_dssp             CCGGGCEEEEEEEECC-C
T ss_pred             CChhHCEEEEEEEEeCCC
Confidence            999999999999976543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.22  E-value=0.00034  Score=56.46  Aligned_cols=76  Identities=18%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             eecceEeecCceEEEEEEEEecC-CCeEEEEe--CCEEec----cCC-----ccceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP-EPTILWLL--NGQVLH----NSS-----FDLLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~--~g~~l~----~~~-----~~~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      .|..+.+.+|++++|.|...+.. ...+.|++  .|..+.    ...     .........+   .....|+|.+++.+|
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED---RKSSTLILHRATLRD   80 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT---SSEEEEEESSCCGGG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc---CCeeEEEEeeccccc
Confidence            45667889999999999986544 45689998  232211    000     0000000011   123479999999999


Q ss_pred             CeEEEEEeecC
Q psy10487        334 AGEYTCYAENI  344 (610)
Q Consensus       334 ~G~Y~C~a~N~  344 (610)
                      +|.|.|.+...
T Consensus        81 sa~YyCa~~~~   91 (112)
T d1kgcd1          81 AAVYYCILPLA   91 (112)
T ss_dssp             CEEEEEECCCC
T ss_pred             ceeEeeeEecC
Confidence            99999987543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00054  Score=55.30  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             ecceEeecCceEEEEEEEEec--CCCeEEEEeC--CEE---eccC-Ccc--ceeeccCCcee-----eeeeEEEEEecCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD--PEPTILWLLN--GQV---LHNS-SFD--LLEEEEGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~--g~~---l~~~-~~~--~~~~~~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      .....+.+|++++|.|...+.  ....+.|+|-  +..   +... ...  ......++...     .....|+|.+++.
T Consensus         6 e~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~   85 (113)
T d1smoa_           6 EEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV   85 (113)
T ss_dssp             EEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc
Confidence            345677899999999987643  4457889972  211   1110 000  00000011001     1124799999999


Q ss_pred             CCCeEEEEEeecC
Q psy10487        332 LDAGEYTCYAENI  344 (610)
Q Consensus       332 ~D~G~Y~C~a~N~  344 (610)
                      +|+|.|.|.+...
T Consensus        86 ~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          86 EDSGLYQCVIYQP   98 (113)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceEEEEEECC
Confidence            9999999987543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.20  E-value=0.0005  Score=55.28  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             ecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCCeE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~  336 (610)
                      |..+.+.+|++++|.|...+.-  ...+.|++-  +..   +.............+...   .....|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4467889999999999886532  345999972  221   111000000000000000   112589999999999999


Q ss_pred             EEEEeec
Q psy10487        337 YTCYAEN  343 (610)
Q Consensus       337 Y~C~a~N  343 (610)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (111)
T d1rzfl1          87 YYCGTWD   93 (111)
T ss_dssp             EEEEEEE
T ss_pred             eEEeecC
Confidence            9998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.19  E-value=0.00084  Score=53.87  Aligned_cols=82  Identities=17%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-C---CCeEEEEe--CCEEe---ccCCccceeeccCCcee---eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-P---EPTILWLL--NGQVL---HNSSFDLLEEEEGDALF---EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-P---~p~v~W~~--~g~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~  330 (610)
                      +...|..+.+.+|++++|.|.+++. .   .-.+.|++  .|...   .........-...+...   .....|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            3456778889999999999988642 2   23489998  23221   11100000000001000   112479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|+|.|.|.+...
T Consensus        84 ~~DsA~YyCa~~~~   97 (111)
T d2gsia1          84 EEDAATYYCSHIRE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             ccCCceEEEEECCC
Confidence            99999999976543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.18  E-value=0.00065  Score=54.78  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEec---C---CCeEEEEeC--CEEe---ccCCccceeeccCCcee---eeeeEEEEEe
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD---P---EPTILWLLN--GQVL---HNSSFDLLEEEEGDALF---EKSVSITLFN  328 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~---P---~p~v~W~~~--g~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~  328 (610)
                      +...|..+.+.+|++++|.|...+.   .   ...+.|++.  |...   .................   .....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            4456788889999999999987542   1   234899982  2211   10000000000000000   1124799999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|+|.|.|.+.+
T Consensus        84 l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          84 VQAEDLAVYYCKQSY   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccCCCeEEEecccC
Confidence            999999999997653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00044  Score=54.56  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.+.+.+........+.++|.|.+.|. |. ..|+|.+||..+........ ..+.++.+...+.|.|..-.-.....|+
T Consensus         4 P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~-~~~~dgtys~~S~L~v~~~~w~~~~~yt   82 (101)
T d1cqka_           4 PQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQP-IMDTDGSYFVYSKLNVQKSNWEAGNTFT   82 (101)
T ss_dssp             CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCC-EECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeee-ecCCCCcEEEEEEEEECHHHhCCCCEEE
Confidence            555543322222245678999999985 53 47999999998754332222 2334455677788888655444566899


Q ss_pred             EEeecCC
Q psy10487        339 CYAENIR  345 (610)
Q Consensus       339 C~a~N~~  345 (610)
                      |++....
T Consensus        83 C~V~H~~   89 (101)
T d1cqka_          83 CSVLHEG   89 (101)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.17  E-value=0.00044  Score=55.52  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=51.2

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---c-cC--Cc-cceeeccCCc---eeeeeeEEEEEec
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---H-NS--SF-DLLEEEEGDA---LFEKSVSITLFNV  329 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~-~~--~~-~~~~~~~~~~---~~~~~~~L~I~~v  329 (610)
                      .|...|..+.+.+|++++|.|...+ ....+.|++  .|...   . ..  .. ......+...   .......|+|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            4566788889999999999998764 356799998  23211   1 10  00 0000001100   0012358999999


Q ss_pred             CCCCCeEEEEEeec
Q psy10487        330 TDLDAGEYTCYAEN  343 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N  343 (610)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.17  E-value=0.00085  Score=53.93  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             eeeecceEeecCceEEEEEEEEecC-----CCeEEEEe--CCEEe---ccCCccceeeccCCcee---eeeeEEEEEecC
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLL--NGQVL---HNSSFDLLEEEEGDALF---EKSVSITLFNVT  330 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~--~g~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~  330 (610)
                      ...|..+.+.+|++|+|.|.+.+..     ..-+.|++  .|...   .........-.......   .....|+|.+++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            3457788899999999999976432     24588997  23221   11100000000000000   112479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|+|.|.|...+
T Consensus        85 ~eDsAvYYC~~~~   97 (112)
T d1ncwl1          85 AEDLGVYYCWQGT   97 (112)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCcCEeEEEEcCC
Confidence            9999999996544

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0017  Score=50.22  Aligned_cols=79  Identities=19%  Similarity=0.405  Sum_probs=52.1

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      ||.+.+....   ..|+.++|.|.+.|. |. ..|+|.+||..+..... .....++++.+...+.|.+   ...|...|
T Consensus         3 PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~-~~~~~~~~~t~~~~s~l~~---~~~~~~~y   75 (94)
T d1t7va1           3 PPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELR-GDVLHNGNGTYQSWVVVAV---PPQDTAPY   75 (94)
T ss_dssp             CCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEE-EEEEETTTTEEEEEEEEEE---CTTCCSCE
T ss_pred             CCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEE-eeeecCCCCeEEEEEEeEe---CCCCCCEE
Confidence            5666653322   347889999999995 44 37899999998764332 2233344555555566665   45566689


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|++....
T Consensus        76 tC~V~H~s   83 (94)
T d1t7va1          76 SCHVQHSS   83 (94)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99998754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00047  Score=54.52  Aligned_cols=84  Identities=19%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             CceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.+...+.......++.++|.|.+.|. |. ..|+|.+||.......... ...+.++.+...+.|.|..-.......|+
T Consensus         5 P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~-~~~~~dgtys~~S~L~v~~~~w~~g~~yt   83 (102)
T d1l6xa2           5 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP-PVLDSDGSFFLYSKLTVDKSRWQQGNVFS   83 (102)
T ss_dssp             CEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC-CEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcc-eEECCCCCEEEEEEEEECHHHcCCCCEEE
Confidence            555443322222246789999999985 54 4799999998765432222 22334556677788888765544455799


Q ss_pred             EEeecCC
Q psy10487        339 CYAENIR  345 (610)
Q Consensus       339 C~a~N~~  345 (610)
                      |++....
T Consensus        84 C~V~H~~   90 (102)
T d1l6xa2          84 CSVMHEA   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998865

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.15  E-value=0.00042  Score=55.49  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeeccCCce---eeeeeEEEEEecCCCCCeEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |..+.+.+|++++|.|.........+.|++  .|....   ...............   ......|.|.+++.+|+|.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            345778899999999997655556799997  222111   110000000000000   012348999999999999999


Q ss_pred             EEeecC
Q psy10487        339 CYAENI  344 (610)
Q Consensus       339 C~a~N~  344 (610)
                      |.+...
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            987643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.15  E-value=0.00092  Score=53.83  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEec-----CCCeEEEEe--CCEEec---cCCccceeeccCCce---eeeeeEEEEEec
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD-----PEPTILWLL--NGQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNV  329 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~-----P~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v  329 (610)
                      +...|..+.+.+|++|+|.|...+.     ....+.|++  .|....   ............+..   ......|+|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4456778889999999999998643     225689997  222111   000000000000000   012358999999


Q ss_pred             CCCCCeEEEEEeecC
Q psy10487        330 TDLDAGEYTCYAENI  344 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N~  344 (610)
                      +.+|+|.|.|...+.
T Consensus        85 ~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          85 EAEDLGIYYCFQGSH   99 (113)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcccCEEEEEEECCC
Confidence            999999999965543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=0.00075  Score=54.04  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCC---eEEEEe--CCEEecc--CCccceeecc--CCc---eeeeeeEEEEEecCCCCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP---TILWLL--NGQVLHN--SSFDLLEEEE--GDA---LFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~--~g~~l~~--~~~~~~~~~~--~~~---~~~~~~~L~I~~v~~~D~  334 (610)
                      +..+.+.+|++++|.|...+...-   .+.|++  .|+....  ... ......  .+.   .......|.|.+++.+|+
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~-~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Ds   85 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGT-NNRAPGVPARFSGSLIGNKAALTITGAQTEDE   85 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETT-TEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeee-ceeccccceeeeecccccceeeecCCCCcccc
Confidence            345778999999999999754322   288997  2322210  000 000000  000   001235899999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        86 a~YyCa~~~   94 (110)
T d1oaql_          86 AIYFCALWY   94 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEccc
Confidence            999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.14  E-value=0.00069  Score=54.43  Aligned_cols=79  Identities=18%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             eecceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEec---cCCccceeeccCCcee-----eeeeEEEEEecCCCC
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVLH---NSSFDLLEEEEGDALF-----EKSVSITLFNVTDLD  333 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D  333 (610)
                      .|..+.+.+|++++|.|...+.-.  --+.|++  .+....   ...........+....     .....|.|.+++.+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            456688999999999999876432  3489998  222211   0000000000010001     123589999999999


Q ss_pred             CeEEEEEeecC
Q psy10487        334 AGEYTCYAENI  344 (610)
Q Consensus       334 ~G~Y~C~a~N~  344 (610)
                      +|.|.|.+.+.
T Consensus        86 sa~YyCA~~~~   96 (111)
T d1cd0a_          86 EADYYCQSYDA   96 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcEEEEeeccC
Confidence            99999987543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.11  E-value=0.00069  Score=55.25  Aligned_cols=82  Identities=15%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEE---eccCCccceeeccCCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQV---LHNSSFDLLEEEEGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~---l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~  330 (610)
                      +...+..+.+.+|++++|.|...+..  ...+.|++  .|+.   +............++...     .....|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            44556677889999999999998654  45699997  2221   111100000000000000     123589999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|+|.|.|.....
T Consensus        84 ~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          84 ERDEGSYYCACDTL   97 (120)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccCCceeecCcccC
Confidence            99999999986553

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.11  E-value=0.00069  Score=54.64  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             ecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---eccCCccceeeccCCcee---eeeeEEEEEecCCCCCeE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~  336 (610)
                      +..+.+.+|++++|.|.+.+.-  ...+.|++-  +..   +.............+...   .....|.|.+++.+|++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            3457888999999999987643  467999972  211   111000000000000001   113589999999999999


Q ss_pred             EEEEeec
Q psy10487        337 YTCYAEN  343 (610)
Q Consensus       337 Y~C~a~N  343 (610)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (114)
T d2rhea_          87 YYCAAWN   93 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecC
Confidence            9998753

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00061  Score=53.35  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=46.9

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|.. .+..|++|+|.|+.. ...-.+.++|+|...............    ........|.+|+..|+|.|+|
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~----~~~~a~F~l~~v~~~~~G~Y~C   77 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHAR----GSSRAIFSVGPVSPSRRWWYRC   77 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC----------CCEEEEEECCCCTTSCEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCC----CceEEEEEeeecccCCCeEEEE
Confidence            4777777754 488999999999853 234567777777643221110000000    0123479999999999999999


Q ss_pred             Eeec
Q psy10487        340 YAEN  343 (610)
Q Consensus       340 ~a~N  343 (610)
                      ....
T Consensus        78 ~y~~   81 (98)
T d1ugna2          78 YAYD   81 (98)
T ss_dssp             EEEC
T ss_pred             eeEc
Confidence            8643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00031  Score=54.46  Aligned_cols=70  Identities=21%  Similarity=0.355  Sum_probs=49.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|. -.+..|++|+|.|+.. .+.-.+.|+|+|..-....     ...     .....+.|.+|+..|+|.|+|
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~-----~~~-----~~~a~F~i~~v~~~~~G~Y~C   71 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR-----GYG-----KVQAEFPLGPVTTAHRGTYRC   71 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEE-----EEC-----SSEEEEEEEECCGGGCEEEEE
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceee-----cCC-----CceeEEEecccChhcCceEEE
Confidence            577777764 4577899999999864 3456788998775322110     001     123589999999999999999


Q ss_pred             Ee
Q psy10487        340 YA  341 (610)
Q Consensus       340 ~a  341 (610)
                      ..
T Consensus        72 ~~   73 (93)
T d1olla2          72 FG   73 (93)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.10  E-value=0.00062  Score=54.82  Aligned_cols=79  Identities=18%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEE---ecc-CCccceee--ccCCcee-----eeeeEEEEEec
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQV---LHN-SSFDLLEE--EEGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~---l~~-~~~~~~~~--~~~~~~~-----~~~~~L~I~~v  329 (610)
                      |...|..+.+.+|++++|.|...+ ....+.|++  .++.   +.. ........  ...+...     .....|+|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            345677888999999999998643 456799998  2221   100 00000000  0000000     12357999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|+|.|.|.+.
T Consensus        81 ~~~Dsa~YyCa~~   93 (112)
T d1kgce1          81 QQEDSAVYLCASS   93 (112)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCCCEEEEEeee
Confidence            9999999999875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.09  E-value=0.00017  Score=55.05  Aligned_cols=54  Identities=7%  Similarity=0.070  Sum_probs=35.1

Q ss_pred             EEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        393 FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .+.|.....+......|.+++..+  ....+.|.|.+++.+|+|.|.|.|.|+.++
T Consensus        23 ~L~C~~~~~~~~~~~~w~~~g~~~--~~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S   76 (85)
T d2fcba1          23 TLTCRGTHSPESDSIQWFHNGNLI--PTHTQPSYRFKANNNDSGEYTCQTGQTSLS   76 (85)
T ss_dssp             EEEEECSSCCCTTCCEEEETTEEC--TTCCSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred             EEEEEEeeccceeEEEeecccccc--cccccceEEeeccccCCcEEEEECCCCccc
Confidence            345555444433333343333322  234568999999999999999999997664

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.09  E-value=0.00055  Score=54.12  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+...+.......++.++|.|.+.|. |. ..|+|.+||......... .....+++.+...+.|.|..-.-.....|
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~-~~~~~~dgtys~~S~L~v~~~~W~~~~~y   82 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT-EPVLDSDGSYFMYSKLRVEKKNWVERNSY   82 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC-CCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEc-cceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence            3555544322222247789999999985 54 479999999875443221 12223445566778888765554445679


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|.+....
T Consensus        83 tC~V~H~~   90 (102)
T d1igtb4          83 SCSVVHEG   90 (102)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.00061  Score=53.82  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT  338 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  338 (610)
                      |.|.+.+........+.++|.|.+.|.-+  ..|+|.++|.+....... ....+.++.+...+.|.|..-...+...|+
T Consensus         5 P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~-~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt   83 (102)
T d1i1ca2           5 PQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT-PPTMDTDGSYFLYSKLNVKKETWQQGNTFT   83 (102)
T ss_dssp             CEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC-CCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEc-ccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence            55554432222223567899999988643  469999999876543222 122334456677788888776655566899


Q ss_pred             EEeecCC
Q psy10487        339 CYAENIR  345 (610)
Q Consensus       339 C~a~N~~  345 (610)
                      |++....
T Consensus        84 C~V~H~~   90 (102)
T d1i1ca2          84 CSVLHEG   90 (102)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.07  E-value=0.00086  Score=53.92  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             ecceEeecCceEEEEEEEEec---CCCeEEEEe--CCEEe--ccCCccceeeccCCc----eeeeeeEEEEEecCCCCCe
Q psy10487        267 ESMVIREAGGNVTMSCYVYGD---PEPTILWLL--NGQVL--HNSSFDLLEEEEGDA----LFEKSVSITLFNVTDLDAG  335 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~--~g~~l--~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G  335 (610)
                      |..+.+.+|++++|.|...+.   ....+.|++  .|...  .............+.    .......|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            566788999999999998653   234589998  22211  100000000000000    0012358999999999999


Q ss_pred             EEEEEeecCC
Q psy10487        336 EYTCYAENIR  345 (610)
Q Consensus       336 ~Y~C~a~N~~  345 (610)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999886544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00018  Score=56.64  Aligned_cols=40  Identities=13%  Similarity=-0.016  Sum_probs=33.5

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcce--eeeeeccccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPDM--ELIEQSLAME  459 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~--~~~~~l~v~~  459 (610)
                      ..++.|.|.+++.+|+|.|+|.+.|..|..  +..+.|.|+|
T Consensus        57 ~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          57 LANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE   98 (98)
T ss_dssp             CTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             CCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEEC
Confidence            456789999999999999999999999976  5566676654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.002  Score=46.58  Aligned_cols=58  Identities=21%  Similarity=0.416  Sum_probs=40.8

Q ss_pred             ecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        273 EAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      ..|..+.|.|.....+.+  .-.|.|+|+.+..+....           ..-.++|..  .+|+|+|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-----------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-----------CceEEEEec--CCCCceEEEEEcC
Confidence            568889999998765443  468999999998764311           112455543  6789999999653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.05  E-value=0.00082  Score=53.96  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEec----CCCeEEEEe--CCEEec----cCCc------cceeeccCCceeeeeeEEEE
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGD----PEPTILWLL--NGQVLH----NSSF------DLLEEEEGDALFEKSVSITL  326 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~----P~p~v~W~~--~g~~l~----~~~~------~~~~~~~~~~~~~~~~~L~I  326 (610)
                      +...|..+.+.+|++++|.|.....    -...+.|++  .|....    ....      ........    .....|.|
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~----~~~~~L~I   79 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS----RTDFTLII   79 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS----SSEEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecC----CCEEEEEE
Confidence            3455778888999999999987532    223489998  332111    1000      00000000    12358999


Q ss_pred             EecCCCCCeEEEEEeecC
Q psy10487        327 FNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+++.+|+|.|.|.+.+.
T Consensus        80 ~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          80 DPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             cccccccCccEEEeecCC
Confidence            999999999999987543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.05  E-value=0.00078  Score=52.80  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|.. .+..|++|+|.|+... +.-.+.|+|+|.......... ...      .......|..+...|+|.|.|
T Consensus         6 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~-~~~------~~~~~f~~~~~~~~~~G~Y~C   76 (99)
T d1nkra2           6 KPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG-PKV------NGTFQADFPLGPATHGGTYRC   76 (99)
T ss_dssp             CCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE-EEE------TTEEEEEEEEEECCSCEEEEE
T ss_pred             CCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEcc-ccC------CccEEEEEeccccccCEEEEE
Confidence            5777777744 6788999999998643 456788999885432211100 000      112356788888999999999


Q ss_pred             Eeec
Q psy10487        340 YAEN  343 (610)
Q Consensus       340 ~a~N  343 (610)
                      ....
T Consensus        77 ~y~~   80 (99)
T d1nkra2          77 FGSF   80 (99)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            7643

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.04  E-value=0.0002  Score=54.49  Aligned_cols=29  Identities=17%  Similarity=0.090  Sum_probs=24.8

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      .....|.|.+++.+|+|.|+|.|.|+.++
T Consensus        49 ~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          49 SQASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             SSCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             ecceeeEecCCcccCCEEEEEEccCCCcc
Confidence            34567999999999999999999987654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.02  E-value=0.00098  Score=53.57  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=46.5

Q ss_pred             eeecceEeecCceEEEEEEEEecC-----CCeEEEEe--CCEEec--cCCccceeec-cCCcee---eeeeEEEEEecCC
Q psy10487        265 IKESMVIREAGGNVTMSCYVYGDP-----EPTILWLL--NGQVLH--NSSFDLLEEE-EGDALF---EKSVSITLFNVTD  331 (610)
Q Consensus       265 ~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~--~g~~l~--~~~~~~~~~~-~~~~~~---~~~~~L~I~~v~~  331 (610)
                      ..|..+.+.+|++|+|.|.+++.-     ...+.|++  .|....  .......... ..+...   .....|.|.+++.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            446677888999999999987632     45689997  222211  0000000000 000000   1224799999999


Q ss_pred             CCCeEEEEEee
Q psy10487        332 LDAGEYTCYAE  342 (610)
Q Consensus       332 ~D~G~Y~C~a~  342 (610)
                      +|+|.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00019  Score=55.68  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             ccccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487        418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL  451 (610)
Q Consensus       418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  451 (610)
                      ....++.|.|.+++.+|+|.|+|.|.|..|+++.
T Consensus        55 ~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~   88 (93)
T d1ccza1          55 LDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKF   88 (93)
T ss_dssp             ECTTTCCEEECSCCGGGCEEEEEECTTCCSCEEE
T ss_pred             EcCCeeEEEEEecChhhCEEEEEEEECCCcEEEE
Confidence            3455678999999999999999999998887653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00031  Score=54.88  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...|. ..+..|++|+|.|+.. .+.-.+.++|+|.........  ....     .....+.|.+|+..|+|.|.|
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~--~~~~-----~~~a~F~i~~v~~~~~G~Y~C   74 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI--PQEL-----VKKGQFPIPSITWEHTGRYRC   74 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS--CHHH-----HTTTEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc--cCCC-----CCEEEEEEEecCHHHCCeEEE
Confidence            466766665 4478999999999963 345567788877532211100  0000     012378999999999999999


Q ss_pred             Eeec
Q psy10487        340 YAEN  343 (610)
Q Consensus       340 ~a~N  343 (610)
                      ....
T Consensus        75 ~y~~   78 (96)
T d1ugna1          75 YYGS   78 (96)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.01  E-value=0.00079  Score=54.27  Aligned_cols=81  Identities=19%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc----CCccceeecc-CCce-e----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN----SSFDLLEEEE-GDAL-F----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~----~~~~~~~~~~-~~~~-~----~~~~~L~I~~v~  330 (610)
                      |...|..+.+.+|++++|.|...+ -...+.|++  .++....    .......... .... .    .....|+|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            345677888999999999998654 346789998  3332210    0000000000 0000 0    112479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          81 LGDSALYLCASSLA   94 (113)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cccceeeeeeeeCC
Confidence            99999999987643

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00034  Score=55.81  Aligned_cols=35  Identities=14%  Similarity=-0.102  Sum_probs=31.3

Q ss_pred             ccceeeeeeeeccCcc-eeeeecCCCcceeeeeecc
Q psy10487        422 EKKLLDVSITTTDRHT-GSCEALGSQPDMELIEQSL  456 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~-Y~C~A~N~~G~~~~~~~l~  456 (610)
                      ...|.|.+++.+|.|. |+|.|.|..|..++..+|.
T Consensus        69 ~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          69 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             eEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            3479999999999995 9999999999999988875

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.00064  Score=54.61  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---c-CCccceeec---cCCcee----eeeeEEEEEec
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---N-SSFDLLEEE---EGDALF----EKSVSITLFNV  329 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~-~~~~~~~~~---~~~~~~----~~~~~L~I~~v  329 (610)
                      |...|..+.+.+|++++|.|...+ -...+.|++  .|....   . .........   .+....    .....|+|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            445678888999999999998544 345799997  222111   0 000000000   000000    11258999999


Q ss_pred             CCCCCeEEEEEeec
Q psy10487        330 TDLDAGEYTCYAEN  343 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N  343 (610)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999998653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.99  E-value=0.00096  Score=53.83  Aligned_cols=81  Identities=21%  Similarity=0.313  Sum_probs=49.2

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe--cc--CC-ccceeeccCCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL--HN--SS-FDLLEEEEGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l--~~--~~-~~~~~~~~~~~~~-----~~~~~L~I~~v~  330 (610)
                      |...|..+.+.+|++++|.|... .....+.|++  .|..+  ..  .. .........+...     .....|.|.+++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            34456778899999999999975 3456799997  22211  10  00 0000000000000     112479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|+|.|.|.+...
T Consensus        81 ~~DSa~YyCa~~~~   94 (114)
T d1ogae1          81 KNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCCEEEEEEEESS
T ss_pred             cCCceeEEEeeccC
Confidence            99999999977643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.99  E-value=0.00013  Score=63.65  Aligned_cols=112  Identities=11%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             cCCCCCcEEEccCC-CCCCCC----cccccCCCCCcEEEeeCccccccCcC----cCCCCCCccEEEccCccccccCHH-
Q psy10487        102 KYLTILVEVDLSDN-QIAWLH----QDTFLGNDRLKVLYLNGNPITELRAG----QFPKLPYLKTIELQHCQIHSVHKD-  171 (610)
Q Consensus       102 ~~l~~L~~LdLs~n-~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~-  171 (610)
                      .+.+.|++|+|+++ .+..-.    ...+....+|+.|+|++|.+..-...    .+...+.|+.|+|++|.|...... 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45678888888864 454321    23466778999999999998764332    233457899999999998764332 


Q ss_pred             ---HhhcCccccccccccccccccCc-------ccccCCCcccEEecCCCcc
Q psy10487        172 ---ALIHLTALESLNLNGNRLKHLSE-------SVFFPTPNLKTLSLDGNPW  213 (610)
Q Consensus       172 ---~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~~L~~l~l~~N~~  213 (610)
                         ++.....|+.|+|++|.+..+..       ..+...+.|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence               34556789999999987765542       2344567888898877654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.98  E-value=0.0029  Score=48.82  Aligned_cols=80  Identities=25%  Similarity=0.471  Sum_probs=51.6

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccc-eeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      ||.+.+....   ..++.++|.|.+.|. |. -.|+|.++|..+....... ....++++.+...+.|.+.   ..|...
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~   76 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQR   76 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGG
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCE
Confidence            5666653322   234568999999986 43 3689999999887654322 2233445556666677665   344457


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |+|++....
T Consensus        77 ytC~V~H~~   85 (94)
T d1hyrc1          77 FTCYMEHSG   85 (94)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998643

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=2.5e-05  Score=59.50  Aligned_cols=29  Identities=14%  Similarity=0.074  Sum_probs=24.7

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcce
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDM  449 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  449 (610)
                      .+..|.|.+++.+|+|.|.|.|.|+.++.
T Consensus        46 ~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~   74 (82)
T d1f2qa1          46 TNSSLNIVNAKFEDSGEYKCQHQQVNESE   74 (82)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred             ccceeEECCCChhhCCcEEEEecCCCCcc
Confidence            34579999999999999999999976653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.94  E-value=0.00064  Score=54.82  Aligned_cols=84  Identities=14%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEe--c--cCCccceeec--cCCcee----eeeeEEEEEe
Q psy10487        261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVL--H--NSSFDLLEEE--EGDALF----EKSVSITLFN  328 (610)
Q Consensus       261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l--~--~~~~~~~~~~--~~~~~~----~~~~~L~I~~  328 (610)
                      +.|...|..+.+.+|++++|.|..... ...+.|++-  |+.+  .  ..........  ..+...    .....|+|.+
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            345667888899999999999986532 457999982  2211  0  0000000000  000000    1124899999


Q ss_pred             cCCCCCeEEEEEeecCC
Q psy10487        329 VTDLDAGEYTCYAENIR  345 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~~  345 (610)
                      ++.+|+|.|.|.+....
T Consensus        81 ~~~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          81 LELEDSAMYFCASSLRW   97 (113)
T ss_dssp             CCGGGCEEECEEEESSS
T ss_pred             cCcCCceeEEEEeecCC
Confidence            99999999999875433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=2.6e-05  Score=62.27  Aligned_cols=44  Identities=11%  Similarity=-0.047  Sum_probs=33.0

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCccee
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHIT  466 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~  466 (610)
                      ....|.|..+..+|.|.|+|.|.|.+|+...+..+.+-+  |+++.
T Consensus        58 ~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~--p~~L~  101 (103)
T d1iama1          58 AEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA--PYQLQ  101 (103)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECC--CEECE
T ss_pred             ceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcC--CCEEE
Confidence            345788888888899999999999999876655555443  55544

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=3.2e-05  Score=60.06  Aligned_cols=34  Identities=18%  Similarity=0.042  Sum_probs=26.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ....|.|.+++.+|+|.|+|.|.|..    .++.|.|.
T Consensus        55 ~~~~L~I~~v~~~D~G~Y~C~a~n~~----~~a~l~V~   88 (90)
T d1x44a1          55 KKHILIIEGATKADAAEYSVMTTGGQ----SSAKLSVD   88 (90)
T ss_dssp             TEEEEEEEEECTTTCSEEEEEETTEE----EEEEEEEE
T ss_pred             CccEEEECccccccCEEEEEEEecce----EEEEEEEE
Confidence            34479999999999999999999854    44555554

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0033  Score=49.66  Aligned_cols=92  Identities=12%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             CCceeee-ecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCC--CC
Q psy10487        260 PPNVTIK-ESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL--DA  334 (610)
Q Consensus       260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~--D~  334 (610)
                      +|.+... +........+.++|.|.+.|. |. ..|+|.++|..+........... .++.+...+.|+|..-.-.  ..
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~gtys~~S~L~v~~~eW~~~~~   83 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTD   83 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEc-cCCCEEEEEEEEEcHHHhccCCC
Confidence            4555432 222333346779999999985 54 47999999887654332211111 2234555667776544422  23


Q ss_pred             eEEEEEeecCCcceeEEE
Q psy10487        335 GEYTCYAENIRGNASGEI  352 (610)
Q Consensus       335 G~Y~C~a~N~~G~~~~~~  352 (610)
                      ..|+|++....+.....+
T Consensus        84 ~~ytC~V~H~~~~~~~~v  101 (105)
T d1dn0b2          84 EHVVCKVQHPNGNKEKNV  101 (105)
T ss_dssp             CEEEEEEECTTCCEEEEE
T ss_pred             CEEEEEEEECCCCEEeEE
Confidence            479999998876655544

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.87  E-value=0.0017  Score=52.17  Aligned_cols=80  Identities=15%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc----CCccceeecc--CCcee----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN----SSFDLLEEEE--GDALF----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~----~~~~~~~~~~--~~~~~----~~~~~L~I~~v~  330 (610)
                      |...|....+.+|++++|.|.... -...+.|++  .|+.+..    ..........  .....    .....|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            455677788999999999998754 346799998  2322110    0000000000  00000    112479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|+|.|.|.+..
T Consensus        81 ~~DsavYyCA~~~   93 (112)
T d2bnub1          81 PSQTSVYFCASSY   93 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEeecC
Confidence            9999999998754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.86  E-value=0.0013  Score=51.08  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +|.+...| ...+..|++|+|.|+.. .....+.++|+|............ ...    .....+.|.+|+..|+|.|.|
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~-~~~----~~~a~F~l~~v~~~~~G~Y~C   74 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEH-HDG----VSKANFSISRMTQDLAGTYRC   74 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEE-ETT----EEEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeee-cCC----ceEEEEEEcccCcccCeEEEE
Confidence            35666666 45678899999999964 245567888876432111100000 011    234579999999999999999


Q ss_pred             Eeec
Q psy10487        340 YAEN  343 (610)
Q Consensus       340 ~a~N  343 (610)
                      ....
T Consensus        75 ~y~~   78 (96)
T d1nkra1          75 YGSV   78 (96)
T ss_dssp             EEEB
T ss_pred             EEEc
Confidence            8643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.84  E-value=0.0022  Score=51.54  Aligned_cols=81  Identities=16%  Similarity=0.320  Sum_probs=49.4

Q ss_pred             eeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec----cCCccceeecc-CCcee-----eeeeEEEEEecC
Q psy10487        263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH----NSSFDLLEEEE-GDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~----~~~~~~~~~~~-~~~~~-----~~~~~L~I~~v~  330 (610)
                      |...|..+.+.+|++++|.|.... -...+.|++  .|..+.    ........... .....     .....|+|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            455677888999999999998642 346789998  232111    00000000000 00000     112479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999988643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.84  E-value=0.00095  Score=54.61  Aligned_cols=78  Identities=19%  Similarity=0.365  Sum_probs=47.2

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEec---c-CCccceeec----cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVLH---N-SSFDLLEEE----EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l~---~-~~~~~~~~~----~~~~~~~-----~~~~L~I~~  328 (610)
                      .+..+.+.+|++++|.|.++|..  ...+.|++  .|+.+.   . .........    .++....     ....|+|.+
T Consensus         7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~   86 (123)
T d1hxmb1           7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (123)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccc
Confidence            34557778899999999998753  34689998  232111   0 000000000    0111111     124799999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|+|.|.|.+..
T Consensus        87 l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          87 VEKQDIATYYCALWE  101 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccCcEEEEeeeC
Confidence            999999999998643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0002  Score=56.86  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=26.9

Q ss_pred             cccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487        419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDME  450 (610)
Q Consensus       419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  450 (610)
                      ...++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        54 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          54 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            34556799999999999999999999887544

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.83  E-value=0.00083  Score=53.93  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             ccccceeeeeeeeccCc---ceeeeecCCCcceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRH---TGSCEALGSQPDMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G---~Y~C~A~N~~G~~~~~~~l~v  457 (610)
                      ..++.|.|.+++.+|+|   .|+|.|.|..|..+....+.+
T Consensus        60 ~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             ccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            45678999999999888   599999999998876554443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.81  E-value=0.00077  Score=53.80  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=47.4

Q ss_pred             eecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---ccCCccceeeccCCcee---eeeeEEEEEecCCCCCeEE
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---HNSSFDLLEEEEGDALF---EKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y  337 (610)
                      .|..+.+.+|++++|.|.........+.|++  .|..+   .............+...   .....|.|.+++.+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            3556778899999999987655555789998  23211   10000000000000000   1134899999999999999


Q ss_pred             EEEeec
Q psy10487        338 TCYAEN  343 (610)
Q Consensus       338 ~C~a~N  343 (610)
                      .|.+.-
T Consensus        85 yCA~~~   90 (108)
T d1nfde1          85 YCLSSY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            998753

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0013  Score=51.72  Aligned_cols=85  Identities=21%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+...........++.++|.|.+.|. |. ..|.|.+++......... ...  .++.+...+.|+|..-.. +.|.|
T Consensus         5 aP~V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~-~~~--~~g~~s~~S~L~v~~~~w-~~~~y   80 (101)
T d1kcvh2           5 APSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVS-AVL--QSGLYTLSSNTTVASGTW-PSASV   80 (101)
T ss_dssp             CCEEEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC-CEE--ETTEEEEEEEEEEETTTT-TTSCC
T ss_pred             CCEEEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeee-eec--CCCCEEEEEEEEEchhhc-CCCeE
Confidence            3555443222223457889999999984 43 479998877543221111 111  233456667888765544 46789


Q ss_pred             EEEeecCCcce
Q psy10487        338 TCYAENIRGNA  348 (610)
Q Consensus       338 ~C~a~N~~G~~  348 (610)
                      +|.+....+..
T Consensus        81 tC~V~H~~~~~   91 (101)
T d1kcvh2          81 TCLVAHPKSST   91 (101)
T ss_dssp             EEEEEEGGGTE
T ss_pred             EEEEEeCCCCe
Confidence            99998765543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.78  E-value=0.00092  Score=53.74  Aligned_cols=82  Identities=16%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             eeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEe---c-cCCccceeeccC--Cce----eeeeeEEEEEecCC
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVL---H-NSSFDLLEEEEG--DAL----FEKSVSITLFNVTD  331 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l---~-~~~~~~~~~~~~--~~~----~~~~~~L~I~~v~~  331 (610)
                      ...|..+.+.+|++++|.|.... -...+.|++  .|..+   . ............  ...    ......|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            45677788999999999998753 245799998  22211   0 000000000000  000    01235799999999


Q ss_pred             CCCeEEEEEeecCCc
Q psy10487        332 LDAGEYTCYAENIRG  346 (610)
Q Consensus       332 ~D~G~Y~C~a~N~~G  346 (610)
                      +|+|.|.|.+....|
T Consensus        81 ~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          81 SHTSQYLCASSENIG   95 (112)
T ss_dssp             TTCSEEEEEEECSSS
T ss_pred             cccccEEEEEecCCC
Confidence            999999998765443

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.78  E-value=0.0012  Score=54.34  Aligned_cols=87  Identities=18%  Similarity=0.292  Sum_probs=56.8

Q ss_pred             CCceeeee-cceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCcc-----ceeeccCCceeeeeeEEEEEecCC
Q psy10487        260 PPNVTIKE-SMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFD-----LLEEEEGDALFEKSVSITLFNVTD  331 (610)
Q Consensus       260 ~P~i~~~~-~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~  331 (610)
                      ||.+...+ .......++.++|.|.+.|. |. ..|+|++||..+......     .......++.+...+.|.|..-.-
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            67776543 33334456789999999986 43 368999999988653221     111123345566778888876665


Q ss_pred             CCCe-EEEEEeecCCc
Q psy10487        332 LDAG-EYTCYAENIRG  346 (610)
Q Consensus       332 ~D~G-~Y~C~a~N~~G  346 (610)
                      .+.| .|+|++.....
T Consensus        84 ~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          84 QNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             TCTTCEEEEEEEECCB
T ss_pred             CCCCCEEEEEEEECCC
Confidence            6655 79999987543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.77  E-value=0.0024  Score=51.88  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             eeeecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEE---ec-cCC-ccceeecc--CCceee-----eeeEEEEE
Q psy10487        264 TIKESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQV---LH-NSS-FDLLEEEE--GDALFE-----KSVSITLF  327 (610)
Q Consensus       264 ~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~---l~-~~~-~~~~~~~~--~~~~~~-----~~~~L~I~  327 (610)
                      ...+..+...+|++++|.|.+.+.-  ...+.|++  .|+.   +. ... ......+.  ++....     ....|+|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3445567788999999999987653  45689998  2221   11 000 00011010  000111     12479999


Q ss_pred             ecCCCCCeEEEEEeec
Q psy10487        328 NVTDLDAGEYTCYAEN  343 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~N  343 (610)
                      +++.+|+|.|.|.+.-
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999997643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.72  E-value=0.00011  Score=57.57  Aligned_cols=77  Identities=22%  Similarity=0.347  Sum_probs=45.9

Q ss_pred             eEeecCceEEEEEEEEecCCCeEEEEe--CCEEecc--C-CccceeeccCCcee-----eeeeEEEEEecCCCCCeEEEE
Q psy10487        270 VIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHN--S-SFDLLEEEEGDALF-----EKSVSITLFNVTDLDAGEYTC  339 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~--~-~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C  339 (610)
                      +.|.+|++++|.|...+ ....+.|++  .|+.+..  . .........++...     .....|+|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46789999999998754 345799998  2322110  0 00000000000000     112479999999999999999


Q ss_pred             EeecCCcc
Q psy10487        340 YAENIRGN  347 (610)
Q Consensus       340 ~a~N~~G~  347 (610)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            88765553

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.71  E-value=0.007  Score=48.30  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             ceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec--c--CCc-cceeeccCCcee----eeeeEEEEEecC
Q psy10487        262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH--N--SSF-DLLEEEEGDALF----EKSVSITLFNVT  330 (610)
Q Consensus       262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~--~--~~~-~~~~~~~~~~~~----~~~~~L~I~~v~  330 (610)
                      .|...|..+.+.+|++++|.|...+.-...+.|++  .|+.+.  .  ... ...........+    .....|.|..++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            35566788889999999999998765567899998  232211  0  000 000000001111    122478999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|.+.-
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999998643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0039  Score=45.59  Aligned_cols=86  Identities=17%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             cceEeecCceEEEEEEEEe-cCCCeEEEEe-CCEEecc-C--Cccc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487        268 SMVIREAGGNVTMSCYVYG-DPEPTILWLL-NGQVLHN-S--SFDL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA  341 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~-~g~~l~~-~--~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  341 (610)
                      +...+-.|+...|.|.+.- .-.|.++|-| +|..-.. .  ...+ .+.++++   ..--.|.+..+-.+|.|.|+|.|
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~n---is~FvLhF~pvl~sDnGsYrCSa   87 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS---VPVFVLHFKPIHLSDNGSYSCST   87 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSS---SCEEEEEETTCCGGGCEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCC---eeEEEEEeeeeeecCCCceEEec
Confidence            3456778999999999863 4679999998 5543221 1  1111 2222221   12237888999999999999999


Q ss_pred             ecCCcce-eEEEEEEc
Q psy10487        342 ENIRGNA-SGEISLDL  356 (610)
Q Consensus       342 ~N~~G~~-~~~~~L~V  356 (610)
                      .-..|.. ++++++.|
T Consensus        88 nf~s~vieSHSvti~V  103 (104)
T d1xaua_          88 NFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             CCChhheecceEEEEe
Confidence            8777654 45666665

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0017  Score=52.69  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             ecceEeecCceEEEEEEEEecCCC---eEEEEe--CCEEe--c----cCCccceeeccC---CceeeeeeEEEEEecCCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP---TILWLL--NGQVL--H----NSSFDLLEEEEG---DALFEKSVSITLFNVTDL  332 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~--~g~~l--~----~~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~  332 (610)
                      |..+.+.+|+.++|.|.....-.+   .+.|++  .|+..  .    ............   .........|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            556778899999999998543333   488998  22211  1    001000000000   000122358999999999


Q ss_pred             CCeEEEEEeec
Q psy10487        333 DAGEYTCYAEN  343 (610)
Q Consensus       333 D~G~Y~C~a~N  343 (610)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.002  Score=52.08  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             ecceEeecCceEEEEEEEEecCCC---eEEEEe--CCEEe--c--c-CCccceeeccCCc-e---eeeeeEEEEEecCCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP---TILWLL--NGQVL--H--N-SSFDLLEEEEGDA-L---FEKSVSITLFNVTDL  332 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~--~g~~l--~--~-~~~~~~~~~~~~~-~---~~~~~~L~I~~v~~~  332 (610)
                      |..+.+.+|++++|.|.....-.+   .+.|++  .|+..  .  . .........+... .   ......|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            566788899999999997543222   478998  23221  1  0 0000000000000 0   012358999999999


Q ss_pred             CCeEEEEEeec
Q psy10487        333 DAGEYTCYAEN  343 (610)
Q Consensus       333 D~G~Y~C~a~N  343 (610)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998753

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.00041  Score=57.06  Aligned_cols=38  Identities=11%  Similarity=-0.034  Sum_probs=34.3

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      +..|.|.+++.+|+|.|.|.+.+..|..+....|.|.+
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            56899999999999999999999999888888888765

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.56  E-value=0.0026  Score=50.44  Aligned_cols=86  Identities=15%  Similarity=0.040  Sum_probs=52.6

Q ss_pred             CCceeeee-cceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487        260 PPNVTIKE-SMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       260 ~P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  336 (610)
                      +|.+.+.+ .......++.++|.|.+.|.-+.  .|+|.+||..+.......... ..++.+...+.|+|..-..  ...
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~-~~~gt~~~~S~L~v~~~~w--~~~   84 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSL--DKE   84 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGG--GSC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEcccee-cCCCeEEEEEEEEEecccC--CCe
Confidence            45555543 33344557789999999986433  689999998776543322221 2233445566777644332  236


Q ss_pred             EEEEeecCCcce
Q psy10487        337 YTCYAENIRGNA  348 (610)
Q Consensus       337 Y~C~a~N~~G~~  348 (610)
                      |+|.+.......
T Consensus        85 ytC~V~H~s~~~   96 (107)
T d1hxmb2          85 HRCIVRHENNKN   96 (107)
T ss_dssp             EEEEEEETTSGG
T ss_pred             EEEEEEECCCCC
Confidence            999998865543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0034  Score=50.00  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             cceEeecCceEEEEEEEEec--CCCeEEEEe--CCEE----eccCCccc--eeeccCCcee-----eeeeEEEEEecCCC
Q psy10487        268 SMVIREAGGNVTMSCYVYGD--PEPTILWLL--NGQV----LHNSSFDL--LEEEEGDALF-----EKSVSITLFNVTDL  332 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~--~g~~----l~~~~~~~--~~~~~~~~~~-----~~~~~L~I~~v~~~  332 (610)
                      +...+.+|++++|.|..++.  ..-.+.|++  .|+.    +.......  .....++...     .....|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            45678899999999998764  455688998  3331    11111100  0000111111     11247999999999


Q ss_pred             CCeEEEEEeecC
Q psy10487        333 DAGEYTCYAENI  344 (610)
Q Consensus       333 D~G~Y~C~a~N~  344 (610)
                      |+|.|.|.....
T Consensus        83 Dsa~YyCa~~~~   94 (110)
T d1u9ka_          83 DSGLYRCVIYHP   94 (110)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEeCC
Confidence            999999987543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0027  Score=49.88  Aligned_cols=85  Identities=22%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+......-....++.++|.|.+.|. |. ..|+|..++....... .....  .++.+...+.|+|..-.- +.+.|
T Consensus         5 ~PsV~~l~p~~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~~~~--~~g~ys~~S~L~v~~~~w-~~~~y   80 (102)
T d1mjuh2           5 APSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT-FPAVL--QSDLYTLSSSVTVTSSTW-PSQSI   80 (102)
T ss_dssp             CCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEE--ETTEEEEEEEEEECTTTT-TTSCC
T ss_pred             CCEEEEECCCccccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe-ccccc--CCCCEEEEEEEEEehhHc-CCceE
Confidence            4655433222222457889999999986 43 3699977664321111 11112  233556667787766554 35789


Q ss_pred             EEEeecCCcce
Q psy10487        338 TCYAENIRGNA  348 (610)
Q Consensus       338 ~C~a~N~~G~~  348 (610)
                      +|++....+..
T Consensus        81 tC~V~H~~~~~   91 (102)
T d1mjuh2          81 TCNVAHPASST   91 (102)
T ss_dssp             EEEEEEGGGTE
T ss_pred             EEEEEECCCCE
Confidence            99999876544

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.41  E-value=0.0045  Score=50.10  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             CCceeeee-cce-EeecCceEEEEEEEEec-CC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC
Q psy10487        260 PPNVTIKE-SMV-IREAGGNVTMSCYVYGD-PE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD  333 (610)
Q Consensus       260 ~P~i~~~~-~~~-~v~~G~~v~l~C~~~g~-P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  333 (610)
                      .|.+.+.+ ... ....++.++|.|.+.|. |.   .+|+|.++|..+........ ....++.+...+.|.|..-.-..
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~-~~~~~gt~s~~S~L~v~~~eW~~   93 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTH-REDYNSTLRVVSALPIQHQDWMS   93 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCC-EEECSSSEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECcc-EECCCCcEEEEEEEEEeHHHhCC
Confidence            46665543 222 23457889999999985 43   47889999998765433222 23344455666777765444344


Q ss_pred             CeEEEEEeecCC
Q psy10487        334 AGEYTCYAENIR  345 (610)
Q Consensus       334 ~G~Y~C~a~N~~  345 (610)
                      ...|+|.|....
T Consensus        94 g~~ytC~V~H~~  105 (119)
T d1igtb3          94 GKEFKCKVNNKD  105 (119)
T ss_dssp             TCEEEEEEECTT
T ss_pred             CCeEEEEEEECC
Confidence            567999999754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.28  E-value=0.0076  Score=48.34  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=43.6

Q ss_pred             eEeecCceEEEEEEEEecC----CCeEEEEe--CCEEec------cCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        270 VIREAGGNVTMSCYVYGDP----EPTILWLL--NGQVLH------NSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P----~p~v~W~~--~g~~l~------~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ..+.+|++++|.|.++|..    ...+.|++  .|+.+.      .... ....+  .++...     .....|+|.+++
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~-~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDA-KRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGC-EEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcc-cccchhhccccceecccccceeeeeEEeee
Confidence            4467799999999998753    24688997  332110      0000 00000  111111     112579999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999996543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0058  Score=46.95  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             ecceEeecCceEEEEEEEEecCCCeE-EEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEPTI-LWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p~v-~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +..+.+.+|+++.+.|.++ +|..++ .|.+++..+...... ...+..       -..+|.+++..|+|.|.|.|... 
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~-v~~Dpk-------~Gf~I~~~~~~~~g~y~C~a~~~-   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKR-IIWDSR-------KGFIISNATYKEIGLLTCEATVN-   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSS-EEEETT-------TEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCE-EEECCC-------CCEEEeCCCcccCeEEEEEEEEC-
Confidence            3456788999999999987 577765 466577666543321 222222       26899999999999999999765 


Q ss_pred             cceeEEEEE
Q psy10487        346 GNASGEISL  354 (610)
Q Consensus       346 G~~~~~~~L  354 (610)
                      |....+..|
T Consensus        82 g~~~~S~yl   90 (95)
T d1fltx_          82 GHLYKTNYL   90 (95)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            444344444

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0039  Score=49.22  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             eecCceEEEEEEEEec-CC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        272 REAGGNVTMSCYVYGD-PE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       272 v~~G~~v~l~C~~~g~-P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ...++.++|.|.+.|. |.   ..+.|.+++..+...... ......++.+...+.|.|..-.-.....|+|.+......
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~-~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   93 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC-CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEEC-CcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCC
Confidence            3457889999999985 43   467899999987654322 222334455666777877655434455899999986543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0088  Score=46.76  Aligned_cols=73  Identities=15%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             ecCceEEEEEEEEec-CCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487        273 EAGGNVTMSCYVYGD-PEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN  347 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~-P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  347 (610)
                      ..++.++|.|.+.|. |.-  .+.|.+++..+.....  ......++.+...+.|.|..-.-.....|+|.|......
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~--~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF--PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC--CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe--eeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            346789999999995 542  4678888766543222  122233345666778888777655666899999876543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0043  Score=48.78  Aligned_cols=72  Identities=19%  Similarity=0.333  Sum_probs=46.4

Q ss_pred             cCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487        274 AGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA  348 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  348 (610)
                      .++.++|.|.+.|. |. ..|+|.+++......  .......+++.+...+.|+|..-.. ....|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~--t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH--TFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--ECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE--ECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            46779999999886 33 369998777542111  1112223455667778888875543 2457999999876654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=50.37  Aligned_cols=28  Identities=11%  Similarity=-0.012  Sum_probs=23.8

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ....|.|.+++.+|+|.|+|.|.|..++
T Consensus        54 ~~~~L~I~~~~~~D~G~Y~c~a~n~~~s   81 (89)
T d1tiua_          54 KKHILILHNCQLGMTGEVSFQAANAKSA   81 (89)
T ss_dssp             SCEEEECCSCCSCCCSEECCBCSSCBCC
T ss_pred             eeEEEEEcCCChhcCEEEEEEECceEEE
Confidence            3447999999999999999999986554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.17  E-value=0.00098  Score=57.76  Aligned_cols=41  Identities=20%  Similarity=0.136  Sum_probs=18.5

Q ss_pred             hcCCCCCcEEEccCCCCCCCCc----ccccCCCCCcEEEeeCccc
Q psy10487        101 FKYLTILVEVDLSDNQIAWLHQ----DTFLGNDRLKVLYLNGNPI  141 (610)
Q Consensus       101 f~~l~~L~~LdLs~n~l~~l~~----~~f~~l~~L~~L~Ls~N~l  141 (610)
                      +...+.|++|+|++|.+.....    ..+....+|+.|++++|.+
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3445555555555555543211    1223334455555544443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=50.74  Aligned_cols=34  Identities=12%  Similarity=0.125  Sum_probs=26.4

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ....|.|.+++.+|+|.|+|.|.|..    .+++|.|.
T Consensus        60 ~~~~L~I~~~~~~D~G~Y~c~a~n~~----~s~~l~V~   93 (94)
T d1pd6a_          60 AKRTLTISQCSLADDAAYQCVVGGEK----CSTELFVK   93 (94)
T ss_dssp             TEEEEEECSCSSSSCEEEEEEETTEE----ECCEEEEE
T ss_pred             CeEEeecCCCCceecEEEEEEEeeEE----EEEEEEEE
Confidence            34579999999999999999998854    44555543

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.13  E-value=0.017  Score=44.58  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             CceEEEEEEEEecCCC--eEEEEeCCEEeccCCc----cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487        275 GGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSF----DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI  344 (610)
Q Consensus       275 G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  344 (610)
                      .+.++|.|.+.|.-+.  .|+|.+||..+.....    ......++++.+..++.|.|.   ..+...|+|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVD---GGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEEC---TTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEEC---CCCCCEEEEEEEeC
Confidence            4578999999997554  5889999876543221    112234556667777778774   44556899999753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0056  Score=45.17  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=48.0

Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEEEEEeecCC-cceeE
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEYTCYAENIR-GNASG  350 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~-G~~~~  350 (610)
                      ..|.+|+|+|.-  .....|.|.+++..+...........+.       -.|.+.+-+. +++|.|+|.+...- ..+..
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~-------~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~   78 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDE-------DHLSLKEFSELEQSGYYVCYPRGSKPEDANF   78 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEET-------TEEEETTCCHHHHCEEEEEEETTSCGGGCCE
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCccccccccc-------ceEEecccCccccCceEEEEcCCCCCCCcce
Confidence            358999999953  3457799999998887654322111111       2567766655 78999999985432 23344


Q ss_pred             EEEEEc
Q psy10487        351 EISLDL  356 (610)
Q Consensus       351 ~~~L~V  356 (610)
                      -..|.+
T Consensus        79 ~LYLKA   84 (91)
T d1xiwa_          79 YLYLRA   84 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555554

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.04  E-value=0.0056  Score=48.04  Aligned_cols=71  Identities=11%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             cCceEEEEEEEEec-CC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        274 AGGNVTMSCYVYGD-PE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       274 ~G~~v~l~C~~~g~-P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      .+..++|.|.+.|. |.   .+|+|.++|..+....... ...+.++.+...+.|.|..-.-...-.|+|++....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~-~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHA-PEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECC-CEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECC-cEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46778999999884 54   4789999998876543222 223344455666777765443333446999998754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.03  E-value=0.00039  Score=60.41  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             hhhcCCCCCcEEEccC-CCCCCCC----cccccCCCCCcEEEeeCccccccCc----CcCCCCCCccEEEccCccccccC
Q psy10487         99 DTFKYLTILVEVDLSD-NQIAWLH----QDTFLGNDRLKVLYLNGNPITELRA----GQFPKLPYLKTIELQHCQIHSVH  169 (610)
Q Consensus        99 ~~f~~l~~L~~LdLs~-n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~  169 (610)
                      ....+.+.|++|+|++ ++|+.-.    ...+..+++|+.|+|++|.++.-..    ..+.....|+.|++++|.+....
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            3345678888899887 4565322    2345678999999999998876432    23445689999999999886543


Q ss_pred             H----HHhhcCccccc--cccccccccccC----cccccCCCcccEEecCCCccc
Q psy10487        170 K----DALIHLTALES--LNLNGNRLKHLS----ESVFFPTPNLKTLSLDGNPWC  214 (610)
Q Consensus       170 ~----~~~~~l~~L~~--L~L~~n~l~~~~----~~~~~~~~~L~~l~l~~N~~~  214 (610)
                      .    ..+...++|+.  |++++|.+....    ...+...++|+.|++..+...
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            2    34455677876  455667775422    234456788999999887654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.02  E-value=0.0092  Score=47.58  Aligned_cols=72  Identities=21%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             ceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      ...+.+|++++|.|.++|...-  .+.|++  .|+-+      ...... .+.+  .++..+.     ....|.|.+++.
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~-~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGST-NYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCE-EECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccc-hhccceeeeeEEeccCchheeccccccccc
Confidence            4457789999999999987544  478987  33221      111110 0000  0111111     124699999999


Q ss_pred             CCCeEEEEEe
Q psy10487        332 LDAGEYTCYA  341 (610)
Q Consensus       332 ~D~G~Y~C~a  341 (610)
                      +|++.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999943

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.00  E-value=0.014  Score=46.34  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=44.6

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|...-  .+.|++  .|+-      +........+.+  .++..+     .....|+|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34556789999999999987543  478987  3322      111111001100  011111     112479999999


Q ss_pred             CCCCeEEEEEe
Q psy10487        331 DLDAGEYTCYA  341 (610)
Q Consensus       331 ~~D~G~Y~C~a  341 (610)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999953

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.99  E-value=0.013  Score=46.47  Aligned_cols=78  Identities=21%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCcccee--eccCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLE--EEEGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|...  -.+.|++  .|+-+      ........+  ...++..+.     ....|+|.+++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3456788999999999998643  3478987  33321      111100000  001111111     12369999999


Q ss_pred             CCCCeEEEEEeecCC
Q psy10487        331 DLDAGEYTCYAENIR  345 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~  345 (610)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          88 SDDTAVYYCAVPDPD  102 (117)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             cCcceEEEEeEcCCC
Confidence            999999999865443

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.99  E-value=0.014  Score=46.13  Aligned_cols=76  Identities=21%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|...-  .+.|++  .|+-+      ...... .+.+  .++...     .....|+|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~-~y~~~~kgR~tis~D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTT-LLDPSLRGRVTMLVNTSKNQFSLRLSSVT   86 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCE-EECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccc-eeccceeecceeecccchhhhhccccccc
Confidence            34567789999999999986544  578987  33311      111110 0000  011111     113479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|++.|.|...-.
T Consensus        87 ~eDtAvYyCAr~~~  100 (116)
T d7fabh1          87 AADTAVYYCARNLI  100 (116)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccceEEEeeeecC
Confidence            99999999975433

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.87  E-value=0.013  Score=46.58  Aligned_cols=75  Identities=17%  Similarity=0.283  Sum_probs=44.9

Q ss_pred             ceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccc-eeeccCCcee-----eeeeEEEEEecCCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDL-LEEEEGDALF-----EKSVSITLFNVTDL  332 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~-~~~~~~~~~~-----~~~~~L~I~~v~~~  332 (610)
                      .-.+.+|++++|.|.++|....  .+.|++  .|+-+      ..+...+ .....++..+     .....|.|.+++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            3467889999999999986543  478987  22211      1111000 0000011111     11247999999999


Q ss_pred             CCeEEEEEeec
Q psy10487        333 DAGEYTCYAEN  343 (610)
Q Consensus       333 D~G~Y~C~a~N  343 (610)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997654

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0003  Score=55.59  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CCCceeeee-cceEeecCceEEEEEEEEec--CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        259 CPPNVTIKE-SMVIREAGGNVTMSCYVYGD--PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       259 c~P~i~~~~-~~~~v~~G~~v~l~C~~~g~--P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.|.+...+ ....+..++.++|.|.+.|.  |. ..|+|.+++........   .....++.+...+.|.|..-.-...
T Consensus         1 ~~P~V~l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~---~~~~~~gt~s~~S~L~v~~~~W~~g   77 (101)
T d1ow0a1           1 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP---PERDLCGCYSVSSVLPGCAEPWNHG   77 (101)
T ss_dssp             CCCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECC---CCCCSTTCCCEEEECTTTHHHHHHT
T ss_pred             CCCEEEEECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecc---eEECCCCCEEEEEEEEEcHHHcCCC
Confidence            678887764 34445568899999999985  43 37999987754322111   1122233334444554332222235


Q ss_pred             eEEEEEeecCC
Q psy10487        335 GEYTCYAENIR  345 (610)
Q Consensus       335 G~Y~C~a~N~~  345 (610)
                      ..|+|.|....
T Consensus        78 ~~ftC~V~H~~   88 (101)
T d1ow0a1          78 KTFTCTAAYPE   88 (101)
T ss_dssp             CEEEEEECCSS
T ss_pred             CeEEEEEEeCC
Confidence            68999998754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.019  Score=46.11  Aligned_cols=74  Identities=16%  Similarity=0.042  Sum_probs=41.0

Q ss_pred             eEeecCceEEEEEEEEecCCC--e-EEEEeC-CEE---ec--c-CCccceeeccCCcee-----eeeeEEEEEecCCCCC
Q psy10487        270 VIREAGGNVTMSCYVYGDPEP--T-ILWLLN-GQV---LH--N-SSFDLLEEEEGDALF-----EKSVSITLFNVTDLDA  334 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~p--~-v~W~~~-g~~---l~--~-~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~  334 (610)
                      ..+.+|+.++|.|...+.-..  . +.|++. +..   +.  . ..........+....     .....|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            456789999999998755433  2 345552 211   11  0 000000000011011     1124799999999999


Q ss_pred             eEEEEEeec
Q psy10487        335 GEYTCYAEN  343 (610)
Q Consensus       335 G~Y~C~a~N  343 (610)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0062  Score=47.77  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             EeecCceEEEEEEEEec-CC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        271 IREAGGNVTMSCYVYGD-PE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~-P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      ....++.++|.|.+.|. |.   .++.|.+++......... ......++.+...+.|.|..-.-.....|+|++.+..
T Consensus        12 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~-~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          12 DLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTR-KEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEE-EEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEc-ccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            34457788999999985 54   367788888765543222 2222334455666777765444344568999998864

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.77  E-value=0.018  Score=45.56  Aligned_cols=76  Identities=24%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v  329 (610)
                      .....+..|++++|.|.++|..--  .+.|++  .|+-      +........+.+  .++..+     .....|.|.++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            345567889999999999986543  578987  3322      111110000000  011111     11246999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.53  E-value=0.026  Score=44.57  Aligned_cols=73  Identities=16%  Similarity=0.347  Sum_probs=44.0

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+-      |........+.+  .++..+.     ....|+|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            3456788999999999998643  3588987  3321      111111000000  1111111     12469999999


Q ss_pred             CCCCeEEEEE
Q psy10487        331 DLDAGEYTCY  340 (610)
Q Consensus       331 ~~D~G~Y~C~  340 (610)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (118)
T d1nlbh1          88 NEDTATYFCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceEEEEe
Confidence            9999999994

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.51  E-value=0.035  Score=44.22  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=45.7

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+.+      ........+.+  .++..+     .....|+|.+++
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            3456788999999999998643  4588987  34322      11110000000  011111     112369999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDtA~YYCAr~~  100 (120)
T d1pg7x1          88 SNDSAVYYCARED  100 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEeeecC
Confidence            9999999998643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.50  E-value=0.042  Score=43.30  Aligned_cols=76  Identities=14%  Similarity=0.291  Sum_probs=45.9

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      -...+..|++++|.|.++|..-  -.+.|++  .|+-      |........+.+  .++..+     .....|.+.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            4456788999999999998653  3578887  3321      111110000000  011111     112469999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999996544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.47  E-value=0.03  Score=44.57  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=46.2

Q ss_pred             ecceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .....+.+|++++|.|.++|...  -.+.|++  .|+.      +........+.+  .++..+.     ....|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            44556789999999999998654  3478987  3322      111110000000  0111111     1236999999


Q ss_pred             CCCCCeEEEEEeec
Q psy10487        330 TDLDAGEYTCYAEN  343 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N  343 (610)
                      +.+|++.|.|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999997643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.47  E-value=0.024  Score=44.72  Aligned_cols=75  Identities=16%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccce-eeccCCceee-----eeeEEEEEecCC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLL-EEEEGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~-~~~~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      ....+..|++++|.|.++|...  -.+.|++  .|+.+      ........ .-..++..+.     ....|+|.+++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            3446788999999999998754  3578887  33321      11111000 0000111111     124799999999


Q ss_pred             CCCeEEEEEee
Q psy10487        332 LDAGEYTCYAE  342 (610)
Q Consensus       332 ~D~G~Y~C~a~  342 (610)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.46  E-value=0.038  Score=43.99  Aligned_cols=75  Identities=28%  Similarity=0.402  Sum_probs=44.4

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|..-  -.+.|++  .|+.+      ........+.+  .++..+     .....|+|.+++
T Consensus         8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            3446778999999999987542  3488987  33321      11111000000  011111     112469999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDsAvYYCA~~   99 (119)
T d1qnzh_          88 SDDSAVYYCAIH   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccceeEEEEEEe
Confidence            999999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.46  E-value=0.022  Score=45.11  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .....+..|++++|.|.++|...-  .+.|++  .|+-      +........+.+  .++..+.     ....|+|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            344567889999999999987643  588987  3332      111110000000  1111111     1247999999


Q ss_pred             CCCCCeEEEEEe
Q psy10487        330 TDLDAGEYTCYA  341 (610)
Q Consensus       330 ~~~D~G~Y~C~a  341 (610)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999943

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.45  E-value=0.022  Score=45.08  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=43.9

Q ss_pred             ceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      ...+..|++++|.|.++|.-  .-.+.|++  .|+.+      ........+.+  .++....     ....|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            44578899999999999863  34588987  33322      11110000000  0111111     124699999999


Q ss_pred             CCCeEEEEEe
Q psy10487        332 LDAGEYTCYA  341 (610)
Q Consensus       332 ~D~G~Y~C~a  341 (610)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999954

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.44  E-value=0.03  Score=44.28  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=47.5

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-.  .+.|++  .|+-      +........+.+  .++..+     .....|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            34567889999999999986544  478887  3322      111111000000  011111     122469999999


Q ss_pred             CCCCeEEEEEeecCCc
Q psy10487        331 DLDAGEYTCYAENIRG  346 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G  346 (610)
                      .+|++.|.|......+
T Consensus        88 ~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          88 SEDTALYYCARLHYYG  103 (118)
T ss_dssp             GGGCEEEEEEEEETTT
T ss_pred             CCcceEEEeeEecCCC
Confidence            9999999998655443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.33  E-value=0.027  Score=43.90  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCc-cceeec---cCCcee-----eeeeEEEEEe
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSF-DLLEEE---EGDALF-----EKSVSITLFN  328 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~-~~~~~~---~~~~~~-----~~~~~L~I~~  328 (610)
                      ....+.+|++++|.|.++|....  -+.|++  .|+-+      ..... ......   .++..+     .....|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            45567889999999999986543  588987  33221      11100 000000   011111     1124799999


Q ss_pred             cCCCCCeEEEEEee
Q psy10487        329 VTDLDAGEYTCYAE  342 (610)
Q Consensus       329 v~~~D~G~Y~C~a~  342 (610)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999753

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.33  E-value=0.033  Score=44.13  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             cceEeecCceEEEEEEEEecCCC---eEEEEe--CCEEe------ccCCccc-eeeccCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP---TILWLL--NGQVL------HNSSFDL-LEEEEGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~--~g~~l------~~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|..--   .+.|++  .|+-+      ....... .....++..+.     ....|+|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            34567789999999999997653   368987  34321      1111100 00000111111     12479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1ncwh1          88 TEDTATYYCAGL   99 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEeEe
Confidence            999999999643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.012  Score=43.93  Aligned_cols=54  Identities=28%  Similarity=0.556  Sum_probs=39.7

Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEEEEEeec
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEYTCYAEN  343 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N  343 (610)
                      ..|.+|+|+|...+.  -.|.|.+|+..+......               .|.+.+.+. +|+|-|.|...+
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~---------------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK---------------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCS---------------EEEEESCCTTTSCEEEEEECSS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCc---------------EEEEccccccccCcceEEecCC
Confidence            358999999986543  469999999988764421               566666544 799999997543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0039  Score=50.45  Aligned_cols=37  Identities=8%  Similarity=0.055  Sum_probs=31.8

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM  458 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  458 (610)
                      ...|.|.+++.+|+|.|.|.+.|..|..+....|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4579999999999999999999998887777777653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.25  E-value=0.031  Score=45.00  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             eecceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      ......+..|++++|.|.++|..-  -.+.|++  .|+-+      ........+.+  .++..+.     ....|+|.+
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~   84 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence            344556788999999999998643  3578987  33321      11110000000  0111111     124699999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          85 LRSDDTAVYYCARDF   99 (130)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCcEEEEEEeec
Confidence            999999999997654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.23  E-value=0.025  Score=45.15  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+-      |........+.+  .++..+     .....|.|.+++
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            3446778999999999998653  3478987  3332      111111000000  011111     112469999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (123)
T d1mqkh_          88 SEDTAMYYCVRHE  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcccceeEEecC
Confidence            9999999997554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.22  E-value=0.0029  Score=50.16  Aligned_cols=38  Identities=13%  Similarity=-0.049  Sum_probs=30.0

Q ss_pred             ccccceeeeeeeeccCcceeeeecCCCc-ceeeeeeccc
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGSQP-DMELIEQSLA  457 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v  457 (610)
                      ..+++|.|.+++.+|+|.|+|.+.+..+ ..+...+|.|
T Consensus        68 ~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             cccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            3467899999999999999999988754 4555566655

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.21  E-value=0.04  Score=43.27  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=45.4

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      +....+..|++++|.|.++|...-  .+.|++  .|+-      |........+.+  .++..+.     ....|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            445677889999999999986543  478987  3321      111111000000  0111111     1247999999


Q ss_pred             CCCCCeEEEEEe
Q psy10487        330 TDLDAGEYTCYA  341 (610)
Q Consensus       330 ~~~D~G~Y~C~a  341 (610)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (116)
T d1mjuh1          87 TSDDSAVYYCAN   98 (116)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEcc
Confidence            999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.20  E-value=0.034  Score=44.07  Aligned_cols=76  Identities=20%  Similarity=0.377  Sum_probs=45.4

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-.  .+.|++  .|+-      +........+.+  .++..+     .....|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            34456789999999999986543  578987  3322      111111000000  011111     112479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1rz7h1          88 SEDTAVYYCAADP  100 (119)
T ss_dssp             GGGCEEEEEEECT
T ss_pred             cccceEEEEeecC
Confidence            9999999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.18  E-value=0.046  Score=42.87  Aligned_cols=74  Identities=16%  Similarity=0.228  Sum_probs=44.6

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+-      +........+.+  .++..+.     ....|+|.+++
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            3456788999999999998654  3578987  3321      111111000000  0111111     12369999999


Q ss_pred             CCCCeEEEEEe
Q psy10487        331 DLDAGEYTCYA  341 (610)
Q Consensus       331 ~~D~G~Y~C~a  341 (610)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.11  E-value=0.024  Score=44.74  Aligned_cols=75  Identities=13%  Similarity=0.235  Sum_probs=45.0

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|..--  .+.|++  .|+-      +...... .+.+  .++..+     .....|+|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~-~y~~s~kgR~tis~D~s~n~~~L~~~~l~   86 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNT-DYNSALKSRLSISKDNSKSQVFLKMNSLH   86 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCE-EECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccc-eecccccccceEeccCCCceEEcceeeee
Confidence            34457889999999999986543  477887  2322      1111110 0000  001011     112469999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        87 ~eDTAvYYCAr~~   99 (116)
T d1a2yb_          87 TDDTARYYCARER   99 (116)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             eccceEEEEEEeC
Confidence            9999999997543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.11  E-value=0.021  Score=46.15  Aligned_cols=75  Identities=24%  Similarity=0.391  Sum_probs=44.4

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE---e---cc-----CCccceeec--cCCcee-----eeeeEEEE
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV---L---HN-----SSFDLLEEE--EGDALF-----EKSVSITL  326 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~---l---~~-----~~~~~~~~~--~~~~~~-----~~~~~L~I  326 (610)
                      ...+.+|++++|.|.++|..-  -.+.|++  .|+-   +   ..     ......+.+  .++..+     .....|+|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            445678999999999998643  3578997  2221   1   10     000000000  011111     11247999


Q ss_pred             EecCCCCCeEEEEEeec
Q psy10487        327 FNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       327 ~~v~~~D~G~Y~C~a~N  343 (610)
                      .+++.+|++.|.|.+.-
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999998643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.08  E-value=0.051  Score=42.83  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=44.5

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+..|+++.|.|.++|..-.  .+.|++  .|+-      +........+.+  .++..+.     ....|.|.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            34456789999999999987544  478987  3322      111110000000  0111111     12479999999


Q ss_pred             CCCCeEEEEEe
Q psy10487        331 DLDAGEYTCYA  341 (610)
Q Consensus       331 ~~D~G~Y~C~a  341 (610)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1jnhb1          88 SEDSAVYSCSR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.06  E-value=0.032  Score=44.59  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             ceEeecCceEEEEEEEEecCC----CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE----PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~----p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      ...+.+|++++|.|.++|..-    -.+.|++  .|+.+      ...... ...+  .++..+.     ....|+|.++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~-~y~~~~k~Rftis~D~s~~~~~L~i~sl   87 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDN-RYNPSLKSRLTVSKDTSNNQAFLNMMTV   87 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCC-EECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccc-cccceeeEEEEccccccceeEEcceeec
Confidence            446778999999999997532    2467987  33221      111110 0000  0111111     1246999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999743

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.05  E-value=0.048  Score=43.05  Aligned_cols=76  Identities=21%  Similarity=0.345  Sum_probs=45.3

Q ss_pred             eecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~  328 (610)
                      .+....+.+|++++|.|.++|.-  .--+.|++  .|+-+      ........+.+  .++..+     .....|+|.+
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~   85 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence            34456678899999999999854  34578887  34322      11110000000  001111     1124799999


Q ss_pred             cCCCCCeEEEEEe
Q psy10487        329 VTDLDAGEYTCYA  341 (610)
Q Consensus       329 v~~~D~G~Y~C~a  341 (610)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999964

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.04  E-value=0.029  Score=43.45  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             cCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecCCCCCeE
Q psy10487        274 AGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVTDLDAGE  336 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~~D~G~  336 (610)
                      .|++++|.|.++|..--  .+.|++  .|+.+      ........+.+  .++..+     .....|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48899999999986543  588987  33322      11110000000  011111     223479999999999999


Q ss_pred             EEEEeecCC
Q psy10487        337 YTCYAENIR  345 (610)
Q Consensus       337 Y~C~a~N~~  345 (610)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999765443

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.01  E-value=0.064  Score=42.85  Aligned_cols=75  Identities=21%  Similarity=0.366  Sum_probs=45.9

Q ss_pred             ceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      .-.+.+|++++|.|.++|....  .+.|++  .|+-      |........+.+  .++..+     .....|.|.+++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            4467789999999999986544  578987  3321      211111101000  111111     1224799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (124)
T d1zvya1          88 EDTAIYTCGATR   99 (124)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeecc
Confidence            999999997654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.98  E-value=0.051  Score=43.58  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=45.7

Q ss_pred             ecceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v  329 (610)
                      .....+.+|++++|.|.++|..-  -.+.|++  .|+-+      ..........+  .++..+     .....|+|.++
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            34556788999999999998653  3578887  33321      11111000000  011111     11246999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAR~   99 (125)
T d1rihh1          87 TSEDSAVYYCARE   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEeee
Confidence            9999999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.96  E-value=0.058  Score=43.11  Aligned_cols=76  Identities=18%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             eecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEe
Q psy10487        266 KESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFN  328 (610)
Q Consensus       266 ~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~  328 (610)
                      .+....+..|++++|.|.++|..--  .+.|++  .|+-      +........+.+  .++..+.     ....|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            3445677889999999999986543  478987  3322      111111000000  0111111     124699999


Q ss_pred             cCCCCCeEEEEEe
Q psy10487        329 VTDLDAGEYTCYA  341 (610)
Q Consensus       329 v~~~D~G~Y~C~a  341 (610)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999963

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.96  E-value=0.037  Score=44.05  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             cceEeecCceEEEEEEEEecCC----CeEEEEe--CCEEe------ccCCcc-ceeeccCCceee-----eeeEEEEEec
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE----PTILWLL--NGQVL------HNSSFD-LLEEEEGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~----p~v~W~~--~g~~l------~~~~~~-~~~~~~~~~~~~-----~~~~L~I~~v  329 (610)
                      ....+.+|++++|.|.++|...    -.+.|++  .|+.+      ...... +.....++..+.     ....|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            3445778999999999998643    2478987  33221      111110 000000111111     1246999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999643

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0065  Score=47.93  Aligned_cols=41  Identities=10%  Similarity=-0.087  Sum_probs=25.9

Q ss_pred             ceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCccee
Q psy10487        424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHIT  466 (610)
Q Consensus       424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~  466 (610)
                      .|.+.....+|.|.|+|+|.|.+|.......+.+-  .|+.++
T Consensus        64 ~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~s--~p~~l~  104 (106)
T d1zxqa1          64 TFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS--APKMLE  104 (106)
T ss_dssp             EEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEEC--CCEECE
T ss_pred             EEEEeeehhcCCcEEEEEEEecCCCCCCeeEeccc--CCcEEe
Confidence            45555556667779999999998865444333332  255444

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.92  E-value=0.047  Score=44.24  Aligned_cols=75  Identities=15%  Similarity=0.243  Sum_probs=44.5

Q ss_pred             ceEeecCceEEEEEEEEecCC----CeEEEEe--CCEEe------ccCCccc-eeeccCCceee-----eeeEEEEEecC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE----PTILWLL--NGQVL------HNSSFDL-LEEEEGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~----p~v~W~~--~g~~l------~~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ...+.+|++++|.|.++|...    .-+.|++  .|+.+      ....... .....++..+.     ....|+|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            456788999999999997542    3588997  22221      1111000 00001111111     12369999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (132)
T d1tjgh1          89 PVDTATYFCAHRR  101 (132)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEEEec
Confidence            9999999997654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.85  E-value=0.015  Score=46.18  Aligned_cols=76  Identities=17%  Similarity=0.282  Sum_probs=45.7

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------cc--CCccceee--ccCCcee-----eeeeEEEEE
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HN--SSFDLLEE--EEGDALF-----EKSVSITLF  327 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~--~~~~~~~~--~~~~~~~-----~~~~~L~I~  327 (610)
                      .....+.+|++++|.|.++|.-.-  .+.|++  .|+-+      ..  +.....+.  ..++..+     .....|.|.
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~   86 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMN   86 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceec
Confidence            345678899999999999986543  468987  33321      11  11000000  0011011     122469999


Q ss_pred             ecCCCCCeEEEEEee
Q psy10487        328 NVTDLDAGEYTCYAE  342 (610)
Q Consensus       328 ~v~~~D~G~Y~C~a~  342 (610)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          87 RLRVDDTAIYYCTRA  101 (121)
T ss_dssp             SCCGGGCEECEEEEE
T ss_pred             ccCCCcceEEEEecc
Confidence            999999999999653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.83  E-value=0.024  Score=45.26  Aligned_cols=76  Identities=14%  Similarity=0.247  Sum_probs=45.5

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      -...+.+|++++|.|.++|..-  -.+.|++  .|+-+      ........+.+  .++..+.     ....|+|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            3445678999999999998653  3478987  33211      11110000000  1111111     12479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997644

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.83  E-value=0.068  Score=42.69  Aligned_cols=76  Identities=16%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|...  -.+.|++  .|+-      +........+.+  .++..+.     ....|.|.+++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            3456788999999999998653  3578987  3322      111111100000  1111111     12479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997544

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.83  E-value=0.064  Score=42.63  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=44.8

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceeee-----eeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFEK-----SVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~~-----~~~L~I~~v~~  331 (610)
                      ...+.+|++++|.|.++|.--  -.+.|++  .|+.      |........+.+  .++..+..     ...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            445678999999999998543  3478987  3332      111110000000  11111111     24799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1ol0a_          89 EDTAVYYCAREP  100 (121)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccceEEEEEEec
Confidence            999999997543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=94.80  E-value=0.049  Score=43.05  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=45.1

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+-      +........+.+  .++..+     .....|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            4456788999999999998553  3578887  3332      111111000000  011111     122479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.76  E-value=0.07  Score=42.20  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccC-Cccceeecc---CCceee-----eeeEEEEEe
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNS-SFDLLEEEE---GDALFE-----KSVSITLFN  328 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~-~~~~~~~~~---~~~~~~-----~~~~L~I~~  328 (610)
                      ....+..|++++|.|.++|...  -.+.|++  .|+-+      ... ........+   ++..+.     ....|+|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            3445778999999999998643  3578987  34322      110 000010000   111111     124799999


Q ss_pred             cCCCCCeEEEEEeec
Q psy10487        329 VTDLDAGEYTCYAEN  343 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N  343 (610)
                      ++.+|++.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999996543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.026  Score=42.31  Aligned_cols=68  Identities=12%  Similarity=0.137  Sum_probs=46.2

Q ss_pred             CeEEEEeCC--EEeccCCccc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcC
Q psy10487        290 PTILWLLNG--QVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLP  357 (610)
Q Consensus       290 p~v~W~~~g--~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~  357 (610)
                      -.|.|.+.+  ..+....+.. .....+...+..+|+|.|.++..+|+|.|.-.+-|.-|..  ..++.|.|.
T Consensus        28 ddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          28 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             EEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ceeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            358899843  4444333222 2222222344566899999999999999999999999974  567777663

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.73  E-value=0.3  Score=39.07  Aligned_cols=90  Identities=12%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..-  -.+.|++  .|+-      |........+.+  .++..+.     ....|.|.+++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~   87 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK   87 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence            3445778999999999998643  3478987  3321      111110000000  0111111     12479999999


Q ss_pred             CCCCeEEEEEeecCCcce--eEEEEEEcC
Q psy10487        331 DLDAGEYTCYAENIRGNA--SGEISLDLP  357 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~~G~~--~~~~~L~V~  357 (610)
                      .+|++.|.|......+.+  -.-..|+|.
T Consensus        88 ~eDTAvYYCAr~~~~~~d~WGqGT~VTVs  116 (135)
T d1ieha_          88 SEDTAVYYCAKYSGGALDAWGQGTQVTVS  116 (135)
T ss_dssp             SSSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred             cccceeeEEEEecCCccceeCCCEEEEEE
Confidence            999999999765443322  223455553

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.68  E-value=0.072  Score=42.12  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=44.9

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|...-  .+.|++  .|+-+      ........+.+  .++..+     .....|+|.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34567889999999999986543  578887  33221      11110000000  011111     112479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999653

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.66  E-value=0.0041  Score=49.62  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=45.2

Q ss_pred             CCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487        260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY  337 (610)
Q Consensus       260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  337 (610)
                      +|.+...+.......++.++|.|.+.|. |. ..|+|.+++..-   ..........++.+...+.|.|..-.-.....|
T Consensus        12 ~P~V~l~~p~~~~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~---~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   88 (111)
T d1pfca_          12 IPEVYLLPPPRNELSKKKVSLTCMITGFYPADINVEWDSSEPSD---YKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESF   88 (111)
T ss_dssp             CCCCCBCCCCSCCCCTTSCCEEEEEESCCSSCCEEESSSCCTTT---EEEEEEECCSSCCCEEEEEECCCSSCCHHHHCC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEeeECCCcEEEEeeCCCCC---cEEcccEECCCCcEEEEEEEEECHHHhCCCCEE
Confidence            3555443322222245678999999985 43 579998887421   111111223344455556666533322224469


Q ss_pred             EEEeecCC
Q psy10487        338 TCYAENIR  345 (610)
Q Consensus       338 ~C~a~N~~  345 (610)
                      +|.+....
T Consensus        89 tC~V~H~~   96 (111)
T d1pfca_          89 TCSVMHEA   96 (111)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99998864

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.64  E-value=0.085  Score=42.17  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      ...+..|++++|.|.++|.--  -.+.|++  .|+-+      ........+.+  .++..+.     ....|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            445678999999999998643  3478987  33221      11110000000  0111111     124799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|++.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.64  E-value=0.057  Score=42.82  Aligned_cols=75  Identities=20%  Similarity=0.340  Sum_probs=44.7

Q ss_pred             cceEeecCceEEEEEEEEecCC--CeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      -...+.+|++++|.|.++|...  -.+.|++  .|+-      +........+.+  .++..+     .....|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            3456788999999999998643  4578987  3321      111110000000  011111     112479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999753

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.62  E-value=0.021  Score=45.72  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v  329 (610)
                      .....+.+|+++.|.|.++|...-  .+.|++  .|+-      |........+.+  .++..+     .....|.|.++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            345567889999999999987543  478887  3322      111111000000  111111     12247999999


Q ss_pred             CCCCCeEEEEEe
Q psy10487        330 TDLDAGEYTCYA  341 (610)
Q Consensus       330 ~~~D~G~Y~C~a  341 (610)
                      +.+|++.|.|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.59  E-value=0.086  Score=41.92  Aligned_cols=76  Identities=21%  Similarity=0.303  Sum_probs=45.7

Q ss_pred             ecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      .....+..|++++|.|.++|..  .-.+.|++  .|+.+      ........+.+  .++..+.     ....|.|.++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            3445678899999999998754  34588987  34321      11110000000  1111111     1246999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1j05b_          87 TSEDTAVYYCAPF   99 (121)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCcceEEEeEee
Confidence            9999999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.57  E-value=0.053  Score=43.10  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=45.1

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+.+|+++.|.|.++|..--  .+.|++  .|+-      |........+.+  .++..+     .....|+|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            44567789999999999986543  578887  3321      111111000000  011111     112479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.56  E-value=0.062  Score=42.72  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCc-cceeecc---CCceee-----eeeEEEEEe
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSF-DLLEEEE---GDALFE-----KSVSITLFN  328 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~-~~~~~~~---~~~~~~-----~~~~L~I~~  328 (610)
                      ....+..|++++|.|.++|....  .+.|++  .|+-+      ..... ......+   ++..+.     ....|+|.+
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            34467789999999999986543  588997  33321      11100 0000000   111111     124699999


Q ss_pred             cCCCCCeEEEEEeecC
Q psy10487        329 VTDLDAGEYTCYAENI  344 (610)
Q Consensus       329 v~~~D~G~Y~C~a~N~  344 (610)
                      ++.+|++.|.|.....
T Consensus        88 L~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          88 LRAEDSATYYCARDHD  103 (122)
T ss_dssp             CCGGGCEEEEEEECCC
T ss_pred             eccCcceEEEEEecCC
Confidence            9999999999986443

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.55  E-value=0.019  Score=45.46  Aligned_cols=73  Identities=14%  Similarity=0.290  Sum_probs=43.8

Q ss_pred             eEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecCCC
Q psy10487        270 VIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVTDL  332 (610)
Q Consensus       270 ~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~~  332 (610)
                      ..+.+|++++|.|.++|..-  -.+.|++  .|+.+      ...... .+.+  .++..+     .....|++.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t-~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYT-AYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCE-EECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccc-cccccccceEEEccccccchhhcceeccCCC
Confidence            34668999999999998654  3578987  33321      111110 0000  011111     11246999999999


Q ss_pred             CCeEEEEEeec
Q psy10487        333 DAGEYTCYAEN  343 (610)
Q Consensus       333 D~G~Y~C~a~N  343 (610)
                      |++.|.|....
T Consensus        89 DTAvYyCAr~~   99 (116)
T d1fn4b1          89 DTGTYYCTRDL   99 (116)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CCEEEEEEeec
Confidence            99999996543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.50  E-value=0.068  Score=42.83  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|..--  .+.|++  .|+-+      ........+.+  .++..+     .....|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34557889999999999986544  467876  33211      11111000000  011111     122479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.49  E-value=0.054  Score=43.22  Aligned_cols=75  Identities=19%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             ecceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      +....+..|++++|.|.++|..--  .+.|++  .|+-+      ........+.+  .++..+.     ....|+|.++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            344567889999999999986543  478987  33221      11111000000  0111111     1247999999


Q ss_pred             CCCCCeEEEEEe
Q psy10487        330 TDLDAGEYTCYA  341 (610)
Q Consensus       330 ~~~D~G~Y~C~a  341 (610)
                      +.+|++.|.|..
T Consensus        87 ~~eDTA~YYCAR   98 (124)
T d2b1hh1          87 KPSDTALYYCAR   98 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEEee
Confidence            999999999954

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.39  E-value=0.091  Score=41.86  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      .-.+..|++++|.|.++|.-.  -.+.|++  .|+-+      ........+.+  .++..+.     ....|+|.+++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            456788999999999998543  4578987  33221      11110000000  0111111     124799999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999997543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.011  Score=47.30  Aligned_cols=38  Identities=8%  Similarity=0.108  Sum_probs=26.9

Q ss_pred             cccceeeeeeeeccCcceeeeecCCCc--ceeeeeecccc
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGSQP--DMELIEQSLAM  458 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G--~~~~~~~l~v~  458 (610)
                      .+..|.|.+++.+|+|.|.|.+.+..+  ......+|.|.
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            445799999999999999999988543  33444555554

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=94.27  E-value=0.081  Score=41.70  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=45.2

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+..|++++|.|.++|..--  .+.|++  .|+-+      ...... .+.+  .++..+.     ....|.|.+++
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t-~y~~s~kgR~tiSrD~s~nt~~L~i~~l~   86 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLL-YFSDSVKGRFTISRDIVRNILTLQMSRLR   86 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCE-EECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccch-hhccccceeEEEeccccceeeeecccccc
Confidence            34457789999999999986543  578887  33221      111110 0000  0111111     12479999999


Q ss_pred             CCCCeEEEEEeec
Q psy10487        331 DLDAGEYTCYAEN  343 (610)
Q Consensus       331 ~~D~G~Y~C~a~N  343 (610)
                      .+|++.|.|...-
T Consensus        87 ~eDtA~YyCAr~~   99 (118)
T d1lo4h1          87 SEDTAIYYCARGT   99 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEecccC
Confidence            9999999997543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.24  E-value=0.081  Score=42.57  Aligned_cols=74  Identities=15%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccC-Cccceeec---cCCcee-----eeeeEEEEEec
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNS-SFDLLEEE---EGDALF-----EKSVSITLFNV  329 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~-~~~~~~~~---~~~~~~-----~~~~~L~I~~v  329 (610)
                      ...+..|++++|.|.++|...  -.+.|++  .|+-+      ... ........   .++..+     .....|+|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            445788999999999997643  3578887  33321      100 00000000   011111     11247999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.23  E-value=0.023  Score=44.23  Aligned_cols=70  Identities=20%  Similarity=0.442  Sum_probs=40.1

Q ss_pred             EeecCceEEEEEEEEecC--CCeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecCCCC
Q psy10487        271 IREAGGNVTMSCYVYGDP--EPTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVTDLD  333 (610)
Q Consensus       271 ~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~~D  333 (610)
                      .+..|++++|.|.++|.-  .-.+.|++  .|+-      +...... .+.+  .++..+     .....|+|.+++.+|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t-~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGIT-NYADFVKGRFTISRDNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCE-EECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeecccc-ccccccccceEEecCCceeEEEEeecCCCccc
Confidence            356799999999998753  33478887  2221      1111100 0000  011111     112479999999999


Q ss_pred             CeEEEEEe
Q psy10487        334 AGEYTCYA  341 (610)
Q Consensus       334 ~G~Y~C~a  341 (610)
                      ++.|.|..
T Consensus        83 tAvYyCA~   90 (107)
T d1sjva_          83 TAVYYCYT   90 (107)
T ss_dssp             CSEEEEEE
T ss_pred             ceeeeEec
Confidence            99999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.21  E-value=0.083  Score=42.28  Aligned_cols=73  Identities=18%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             ceEeecCceEEEEEEEEecCC---CeEEEEe--CCEEe------ccCCccceeec--cCCcee-----eeeeEEEEEecC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE---PTILWLL--NGQVL------HNSSFDLLEEE--EGDALF-----EKSVSITLFNVT  330 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~---p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~  330 (610)
                      ...+..|++++|.|.++|..-   -.+.|++  .|+-+      ...... .+.+  .++..+     .....|+|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~-~y~~s~kgR~tis~d~s~nt~yL~l~~l~   87 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDN-NYNPSLKDRLSITRDTSKNQFFLKLNSVT   87 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCE-EECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccc-hhcccccccceeecccccceeecceeccc
Confidence            345678999999999998653   3578987  34322      111110 0000  001111     122479999999


Q ss_pred             CCCCeEEEEEee
Q psy10487        331 DLDAGEYTCYAE  342 (610)
Q Consensus       331 ~~D~G~Y~C~a~  342 (610)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.16  E-value=0.067  Score=42.98  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             ceEeecCceEEEEEEEEecC----CCeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        269 MVIREAGGNVTMSCYVYGDP----EPTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P----~p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      ...+.+|++++|.|.++|.-    ...+.|++  .|+.+      ...... ...+  .++..+.     ....|+|.++
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~-~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKK-YYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCE-EECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCc-eeceeeeEeeEEecccCCcEEEcceecc
Confidence            34577899999999999743    23567986  33221      111110 0000  0111111     1247999999


Q ss_pred             CCCCCeEEEEEee
Q psy10487        330 TDLDAGEYTCYAE  342 (610)
Q Consensus       330 ~~~D~G~Y~C~a~  342 (610)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999753

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.95  E-value=0.11  Score=41.50  Aligned_cols=75  Identities=16%  Similarity=0.324  Sum_probs=43.9

Q ss_pred             ceEeecCceEEEEEEEEecCCC--eEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      ...+..|++++|.|.++|....  .+.|++  .|+-      |........+.+  .++..+     .....|+|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3456789999999999986543  478987  3322      111111000000  011111     1224699999999


Q ss_pred             CCCeEEEEEeec
Q psy10487        332 LDAGEYTCYAEN  343 (610)
Q Consensus       332 ~D~G~Y~C~a~N  343 (610)
                      +|++.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.07  Score=38.81  Aligned_cols=60  Identities=28%  Similarity=0.434  Sum_probs=37.0

Q ss_pred             ecCceEEEEEEEEecCCCeEEEEeCCEE-eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eE
Q psy10487        273 EAGGNVTMSCYVYGDPEPTILWLLNGQV-LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SG  350 (610)
Q Consensus       273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~  350 (610)
                      ..|+.+.|.|...-  .-.|.|.+++.. +....                .+++|.--...|+|.|+|. .  .|.. +.
T Consensus        19 ~~~~~V~L~C~t~e--E~~I~W~kd~~se~~~~G----------------ntltV~VkE~~~aGnYTCh-k--~g~~Lnh   77 (87)
T d3d85d1          19 APGEMVVLTCDTPE--EDGITWTLDQSSEVLGSG----------------KTLTIQVKEFGDAGQYTCH-K--GGEVLSH   77 (87)
T ss_dssp             CCCEEEEEECSSSC--CSSCEEEETTCCCCCEES----------------SEEEEEECSGGGCEEEEEE-E--TTEEEEE
T ss_pred             CCccEEEEecCCCc--ccccEEeeCCccccccCC----------------CEEEEEEEeccCCcceeEe-C--CCcEeee
Confidence            34678999994321  236999998754 22221                1566654456799999996 3  2654 44


Q ss_pred             EEE
Q psy10487        351 EIS  353 (610)
Q Consensus       351 ~~~  353 (610)
                      ++.
T Consensus        78 t~l   80 (87)
T d3d85d1          78 SLL   80 (87)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.93  E-value=0.11  Score=41.84  Aligned_cols=77  Identities=21%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             cceEeecCceEEEEEEEEecCCC--eEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEecC
Q psy10487        268 SMVIREAGGNVTMSCYVYGDPEP--TILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNVT  330 (610)
Q Consensus       268 ~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v~  330 (610)
                      ....+.+|++++|.|.++|..--  .+.|++  .|+-+      ........+.+  .++..+.     ....|++.+++
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            34567889999999999986543  478887  33221      11110000000  0111111     12479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy10487        331 DLDAGEYTCYAENI  344 (610)
Q Consensus       331 ~~D~G~Y~C~a~N~  344 (610)
                      .+|++.|.|.....
T Consensus        87 ~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          87 SDDTAVYYCASNSI  100 (133)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeeeccC
Confidence            99999999965443

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.86  E-value=0.07  Score=39.83  Aligned_cols=62  Identities=10%  Similarity=0.034  Sum_probs=38.2

Q ss_pred             ceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487        276 GNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR  345 (610)
Q Consensus       276 ~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  345 (610)
                      +.++|.|.+.|.-++  .|.|.+||..+.....   .....++.+...+.+   .+...  ..|+|.+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~---~~~~~~gtys~~s~~---~~~~~--~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPA---IVISPSGKYNAVKLG---KYEDS--NSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCE---EEECTTSSEEEEEEE---EETTT--TTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEE---eeeccCCcEEEEEEE---ecCCC--CEEEEEEEECC
Confidence            456899999987544  5789999987754432   112223333333333   33433  46999998754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.86  E-value=0.11  Score=41.60  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             ecceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCccceeec--cCCceee-----eeeEEEEEec
Q psy10487        267 ESMVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLEEE--EGDALFE-----KSVSITLFNV  329 (610)
Q Consensus       267 ~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~~~--~~~~~~~-----~~~~L~I~~v  329 (610)
                      +....+..|++++|.|.++|..-  -.+.|++  .|+-+      ........+.+  .++..+.     ....|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL   86 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL   86 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence            34456788999999999998643  4588987  33211      11111000000  0111111     1246999999


Q ss_pred             CCCCCeEEEEEeec
Q psy10487        330 TDLDAGEYTCYAEN  343 (610)
Q Consensus       330 ~~~D~G~Y~C~a~N  343 (610)
                      +.+|++.|.|....
T Consensus        87 ~~eDtA~YYCAr~~  100 (130)
T d1rzga1          87 RSEDTAVFYCASPY  100 (130)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             CCCccEEEEEEEec
Confidence            99999999997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.63  E-value=0.18  Score=40.28  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=45.4

Q ss_pred             ceEeecCceEEEEEEEEecCC--CeEEEEe--CCEEe------ccCCcccee--eccCCceee-----eeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDPE--PTILWLL--NGQVL------HNSSFDLLE--EEEGDALFE-----KSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P~--p~v~W~~--~g~~l------~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~v~~  331 (610)
                      ...+.+|++++|.|.++|.-.  -.+.|++  .|+-+      ........+  ...++..+.     ....|+|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            445678999999999998543  3578887  33221      111110000  001111111     124799999999


Q ss_pred             CCCeEEEEEeecC
Q psy10487        332 LDAGEYTCYAENI  344 (610)
Q Consensus       332 ~D~G~Y~C~a~N~  344 (610)
                      +|++.|.|.....
T Consensus        89 eDTA~YYCAr~~~  101 (127)
T d2fb4h1          89 EDTGVYFCARDGG  101 (127)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             cceeEEEEEEecC
Confidence            9999999976543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.095  Score=37.76  Aligned_cols=54  Identities=19%  Similarity=0.362  Sum_probs=38.0

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      +.+.|.|.|.   ....+|.|++++..+.....             ...+|.+-+....=.|.|.|.+.+
T Consensus        16 ~dg~V~L~Cn---~~~k~i~W~kdg~~i~~~~~-------------~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          16 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTE-------------DKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSSEEEEEEC---SCSSEEEEEETTEEEEEEES-------------SCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             cCCeEEEEeC---CCCcEEEEecCCeEeecccC-------------CcceeecCCcccCCCcceEcCCCC
Confidence            3567999994   34568999999987653210             112677777777778999997644

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.2  Score=36.32  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=37.8

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN  343 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  343 (610)
                      +...|.|.|..   ...+|.|++++..+.....             ...+|.+-+....=.|.|.|.+..
T Consensus        21 ~dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~-------------~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------------TKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSC-------------CSSCCEEEETTSCCEEEEEEEESS
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCceeccccc-------------ccceeecCCcccCCCcceEcCCCc
Confidence            35679999943   4468999999988764431             012566777777778999997543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.025  Score=43.41  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=21.5

Q ss_pred             ccceeeeeeeeccCcceeeeecCC
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      +..|.|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC
Confidence            347999999999999999999874

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.029  Score=43.78  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      +.+|.|.+++.+|+|.|.|.+.+..+.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~   90 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEKD   90 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCCC
Confidence            458999999999999999998765443

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.05  E-value=0.067  Score=42.10  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=43.0

Q ss_pred             ceEeecCceEEEEEEEEecC--CCeEEEEe--CCEE------eccCCccceeec--cCCcee-----eeeeEEEEEecCC
Q psy10487        269 MVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQV------LHNSSFDLLEEE--EGDALF-----EKSVSITLFNVTD  331 (610)
Q Consensus       269 ~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~------l~~~~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~  331 (610)
                      ...+.+|++++|.|.++|.-  .-.+.|++  .|+.      |........+.+  .++..+     .....|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            44578899999999998763  33577887  2321      111110000000  011011     1224799999999


Q ss_pred             CCCeEEEEEe
Q psy10487        332 LDAGEYTCYA  341 (610)
Q Consensus       332 ~D~G~Y~C~a  341 (610)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1b2wh1          89 EDTAVYYCAR   98 (117)
T ss_dssp             GGCEEEECCE
T ss_pred             CcceEEEEcc
Confidence            9999999954

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.038  Score=43.88  Aligned_cols=37  Identities=8%  Similarity=-0.037  Sum_probs=27.5

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME  459 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~  459 (610)
                      ..|.|.+++.+|+|.|.|.+............|.|.+
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            4799999999999999998875443334445666654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.08  Score=41.34  Aligned_cols=26  Identities=12%  Similarity=0.040  Sum_probs=22.2

Q ss_pred             ccccceeeeeeeeccCcceeeeecCC
Q psy10487        420 DQEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      ..+..|.|.+++.+|+|.|.|.....
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEec
Confidence            45668999999999999999998643

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.23  E-value=0.0061  Score=49.01  Aligned_cols=84  Identities=14%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             Cceeeee-cc-eEeecCceEEEEEEEEec-CC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487        261 PNVTIKE-SM-VIREAGGNVTMSCYVYGD-PE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA  334 (610)
Q Consensus       261 P~i~~~~-~~-~~v~~G~~v~l~C~~~g~-P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  334 (610)
                      |.+...+ .. .....++.++|.|.+.|. |.   .++.|.+++..+...... ......++.+...+.|.|..-.-...
T Consensus        13 p~V~i~pPs~~e~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~-~~~~~~~gt~s~~S~L~v~~~~W~~g   91 (116)
T d1igyb3          13 SSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQ-PREEQFNSTFRVVSALPIMHQDWLNG   91 (116)
T ss_dssp             CCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCC-CCCCCCSSSCCCCCCEECCHHHHHHT
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEc-ccEECCCCCEEEEEEEEECHHHhCCC
Confidence            5555443 22 234568889999999985 43   356789988765433221 22222333455566777654433345


Q ss_pred             eEEEEEeecCC
Q psy10487        335 GEYTCYAENIR  345 (610)
Q Consensus       335 G~Y~C~a~N~~  345 (610)
                      -.|+|+|.+..
T Consensus        92 ~~ytC~V~H~~  102 (116)
T d1igyb3          92 KEFKCRVNSAA  102 (116)
T ss_dssp             CCCBCCBCCSS
T ss_pred             CEEEEEEEeCC
Confidence            58999998754

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.34  Score=34.05  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487        274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS  353 (610)
Q Consensus       274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  353 (610)
                      ..+.|.|.|.      -+|.|++++..+.....               .+|.+-+....-.|.|.|.+.......+.+++
T Consensus         8 ~e~~V~L~Cn------~si~W~k~~~~~~~~~~---------------k~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~lQ   66 (74)
T d1xiwb_           8 LEDRVFVNCN------TSITWVEGTVGTLLSDI---------------TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQ   66 (74)
T ss_dssp             ETTEEEEECS------SCEEEEEECCCEEEGGG---------------TEEEEEEGGGCCEEEEEEC--------CEEEE
T ss_pred             cCCeEEEEcc------CeeEEecCCcccccCCc---------------cEeecCCcccCCCcceEeCCcccccccCccEE
Confidence            3457899994      47999997643322211               15677777777789999987655444455555


Q ss_pred             EEc
Q psy10487        354 LDL  356 (610)
Q Consensus       354 L~V  356 (610)
                      +..
T Consensus        67 VyY   69 (74)
T d1xiwb_          67 VHY   69 (74)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.17  Score=38.38  Aligned_cols=26  Identities=12%  Similarity=-0.023  Sum_probs=21.9

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQP  447 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G  447 (610)
                      ...+.|.+|+..|+|.|.|...+..+
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          56 KVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEEeeeecCCCceEEEEeCCCCC
Confidence            34789999999999999999877544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.22  Score=37.92  Aligned_cols=27  Identities=4%  Similarity=0.012  Sum_probs=22.6

Q ss_pred             ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487        422 EKKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       422 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ...+.|.+|+..|+|.|.|...+..+-
T Consensus        61 ~a~F~l~~vt~~~~G~Y~C~y~~~~~~   87 (99)
T d1ucta1          61 DPEFVIDHMDANKAGRYQCQYRIGHYR   87 (99)
T ss_dssp             CCEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             eEEEEecCCCHHHCceEEEEEECCCcc
Confidence            346889999999999999999886553

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=0.41  Score=36.91  Aligned_cols=22  Identities=9%  Similarity=0.045  Sum_probs=19.6

Q ss_pred             cceeeeeeeeccCcceeeeecC
Q psy10487        423 KKLLDVSITTTDRHTGSCEALG  444 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N  444 (610)
                      -.|.|.+++.+|+|.|.|....
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~   91 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYR   91 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEhhhCCCCCEEEEEEEec
Confidence            4799999999999999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.73  E-value=0.32  Score=37.75  Aligned_cols=25  Identities=20%  Similarity=-0.024  Sum_probs=21.6

Q ss_pred             cccceeeeeeeeccCcceeeeecCC
Q psy10487        421 QEKKLLDVSITTTDRHTGSCEALGS  445 (610)
Q Consensus       421 ~~~~L~i~~v~~~D~G~Y~C~A~N~  445 (610)
                      .+..|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeC
Confidence            4557999999999999999998654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=80.17  E-value=0.6  Score=35.18  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             cceeeeeeeeccCcceeeeecCCCcc
Q psy10487        423 KKLLDVSITTTDRHTGSCEALGSQPD  448 (610)
Q Consensus       423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~  448 (610)
                      ..|.|.+++.+|+|.|.|.+....|.
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             cccCcCCCCcccCEEEeEeEecCCCC
Confidence            47999999999999999988766554