Psyllid ID: psy10521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MTSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSYT
Secondary Structure (PSIPRED)
cccccccccEEEEcccccEEEEEccccccccEEEEEEccEEccEEEEccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccEEEEEEccHccccccEEEEEEEEccccEEEEccccEEEEEcEEEEEEcc
Coil and Loop (DISEMBL)
mtsddfvggkyvvlssgdlyvfnatpndgyksyrcrtvnkitgesqASVFQTRLSITGFRAVYSYT
Flexible Loop (DISEMBL)
MTSDDFVGGKYVVLssgdlyvfnatpndgyksYRCRTVNKitgesqasvfqtrlsitgfravysyt
Low Complexity Region (SEG)
MTSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSYT
Disordered region (IsUnstruct)
*****FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVY***
Disordered Region (DISOPRED)
*********KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG********
Disordered Region (DISEMBL)
MTSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSYT
Disordered Region (DISPRO)
****DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSYT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSYT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
270009929	621	hypothetical protein TcasGA2_TC009253 [T	0.772	0.082	0.627	3e-12
189238865	1918	PREDICTED: similar to AGAP007092-PA [Tri	0.772	0.026	0.627	3e-12
115646214	506	IP05371p [Drosophila melanogaster]	0.772	0.100	0.607	1e-11
195325943	1531	GM25036 [Drosophila sechellia] gi|194118	0.772	0.033	0.607	2e-11
195167540	944	GL22542 [Drosophila persimilis] gi|19410	0.772	0.054	0.588	2e-11
442630978	1935	down syndrome cell adhesion molecule 4,	0.772	0.026	0.607	3e-11
221330976	1918	down syndrome cell adhesion molecule 4,	0.772	0.026	0.607	3e-11
221330980	1874	down syndrome cell adhesion molecule 4,	0.772	0.027	0.607	3e-11
194865958	1774	GG14294 [Drosophila erecta] gi|190653471	0.772	0.028	0.607	4e-11
195491267	1815	GE20723 [Drosophila yakuba] gi|194179590	0.772	0.028	0.607	4e-11

>gi|270009929|gb|EFA06377.1| hypothetical protein TcasGA2_TC009253 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKYVVLS+GDLY+ NA P DGYK+Y CRTVN++TGE Q S++  R+ +T
Sbjct: 182 IGGKYVVLSNGDLYISNAGPGDGYKNYGCRTVNRLTGEVQTSMYPGRIIVT 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238865|ref|XP_972891.2| PREDICTED: similar to AGAP007092-PA [Tribolium castaneum]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKYVVLS+GDLY+ NA P DGYK+Y CRTVN++TGE Q S++  R+ +T
Sbjct: 182 IGGKYVVLSNGDLYISNAGPGDGYKNYGCRTVNRLTGEVQTSMYPGRIIVT 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646214|gb|ABJ16979.1| IP05371p [Drosophila melanogaster]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 103 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 153

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195325943|ref|XP_002029690.1| GM25036 [Drosophila sechellia] gi|194118633|gb|EDW40676.1| GM25036 [Drosophila sechellia]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7  VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
          +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 39 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167540|ref|XP_002024591.1| GL22542 [Drosophila persimilis] gi|194107996|gb|EDW30039.1| GL22542 [Drosophila persimilis]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 7  VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
          +GGKY VLS+G+LY+ NA PND YK+Y CRTVN++TGE Q S +  R+ +T
Sbjct: 39 IGGKYTVLSNGELYINNAGPNDAYKTYTCRTVNRLTGEIQISTYPGRIIVT 89

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630978|ref|NP_001261571.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|442630980|ref|NP_001261572.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster] gi|440215478|gb|AGB94266.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|440215479|gb|AGB94267.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 177 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330976|ref|NP_001137908.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|221330978|ref|NP_001036596.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster] gi|220902513|gb|ACL83263.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|220902514|gb|ABI31245.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 177 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330980|ref|NP_001137909.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster] gi|220902515|gb|ACL83264.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7   VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 177 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865958|ref|XP_001971688.1| GG14294 [Drosophila erecta] gi|190653471|gb|EDV50714.1| GG14294 [Drosophila erecta]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7  VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
          +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 39 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491267|ref|XP_002093489.1| GE20723 [Drosophila yakuba] gi|194179590|gb|EDW93201.1| GE20723 [Drosophila yakuba]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 7  VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
          +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 39 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.772	0.026	0.607	8.3e-12
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.818	0.026	0.509	1.8e-08

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query:     7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
             +GGKY VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct:   177 IGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query:     3 SDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
             SD++  GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct:   186 SDNY-DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        66   0.00091  102 3  11 22  0.42    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  432 (46 KB)
  Total size of DFA:  75 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  7.31u 0.07s 7.38t   Elapsed:  00:00:12
  Total cpu time:  7.31u 0.07s 7.38t   Elapsed:  00:00:14
  Start:  Thu Aug 15 11:53:56 2013   End:  Thu Aug 15 11:54:10 2013

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.7
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.51
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.45
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.4
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.37
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.34
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.32
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.27
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.26
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.21
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.19
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.19
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.09
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.09
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.08
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.02
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.02
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.02
KOG3513|consensus	1051		97.98
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	97.96
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.95
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.9
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.9
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.89
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.87
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.85
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	97.85
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.81
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.8
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.8
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.79
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	97.71
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.69
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.68
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.68
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.63
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.62
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	97.6
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.6
PHA02785	326	IL-beta-binding protein; Provisional	97.6
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	97.59
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.59
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.58
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.55
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.55
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.54
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.52
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.51
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.51
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.51
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	97.51
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.47
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.46
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.46
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	97.44
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.44
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.43
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.42
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.41
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.41
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.39
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.37
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	97.34
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.33
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.33
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.33
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.32
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.32
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.31
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.31
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.29
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	97.28
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.28
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	97.27
KOG4221|consensus	1381		97.27
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.24
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.23
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.22
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.21
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	97.21
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.19
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.18
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.17
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.15
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	97.12
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.11
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.11
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.1
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.09
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.07
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.07
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.06
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.06
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.05
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.03
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	96.99
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	96.96
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	96.95
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.91
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	96.9
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	96.86
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	96.86
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	96.84
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.84
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.82
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	96.79
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.79
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	96.76
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	96.76
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.76
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	96.76
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.74
smart00409	86	IG Immunoglobulin.	96.74
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	96.73
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.71
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	96.69
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	96.68
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.66
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	96.66
KOG3513|consensus	1051		96.65
smart00406	81	IGv Immunoglobulin V-Type.	96.56
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	96.56
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	96.54
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.53
PHA02826	227	IL-1 receptor-like protein; Provisional	96.53
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.4
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.39
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	96.36
PHA02826	227	IL-1 receptor-like protein; Provisional	96.35
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.32
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	96.31
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.16
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.08
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.06
KOG4222|consensus	1281		96.05
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.97
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	95.88
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	95.83
PHA02785	326	IL-beta-binding protein; Provisional	95.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	95.65
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	95.52
PHA03376	221	BARF1; Provisional	95.27
KOG4221|consensus	1381		94.98
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	94.9
KOG4194|consensus	873		94.86
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.82
PHA02633	63	hypothetical protein; Provisional	94.68
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.47
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.05
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	93.55
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	93.53
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	92.26
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	91.9
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	91.16
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	89.85
KOG4222|consensus	1281		86.22
PHA02987	189	Ig domain OX-2-like protein; Provisional	86.05
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	85.83
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	85.51
KOG4194|consensus	873		84.9
smart00407	75	IGc1 Immunoglobulin C-Type.	82.41
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	80.54

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.70  E-value=2.6e-08  Score=61.92  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521          5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus         5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      +..++|+.+.++|+|+|.||+.+|....|.|.+.|+.+++.++++
T Consensus        46 i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~~~~~~   90 (95)
T cd05845          46 ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRTIVQKE   90 (95)
T ss_pred             ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccceEecC
Confidence            345789999999999999999999743899999999999988776

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.52  E-value=3.9e-07  Score=53.74  Aligned_cols=50  Identities=28%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      ..+||.+.++|.|.|.||+.+|. +.|.|.+.|.. |....   .+.|.|.+...
T Consensus        37 ~~~r~~v~~~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~~~---~~~l~V~~~~~   86 (90)
T cd05726          37 SSSRFSVSQTGDLTITNVQRSDV-GYYICQTLNVA-GSILT---KAYLEVTDVIA   86 (90)
T ss_pred             CCCeEEECCCCeEEEeeCChhhC-EEEEEEEEcCC-CceEE---EEEEEEeeccc
Confidence            46799999999999999999996 99999999976 44332   45888887543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.51  E-value=1e-07  Score=55.30  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++||.++++|.|.|.||+.+|. +.|.|.+.|.+
T Consensus        29 ~~~r~~~~~~g~L~I~~v~~~D~-G~Y~C~A~N~~   62 (73)
T cd05852          29 NNSRISIWDDGSLEILNITKLDE-GSYTCFAENNR   62 (73)
T ss_pred             cCCCEEEcCCCEEEECcCChhHC-EEEEEEEECCC
Confidence            35799999999999999999996 99999999987

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.45  E-value=3.6e-07  Score=55.36  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=38.6

Q ss_pred             cCCeEEE----eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~i----lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+++|.+    ..+|.|.|+||+.+|. |.|.|.+.|.+-..   +. .+.|+|..|
T Consensus        33 ~~~~~~~~~~~~~~~~L~I~nv~~~ds-G~YtC~a~n~~~~~---~a-~a~L~V~~p   84 (85)
T cd05853          33 DGDHFERVGGQDSAGDLMIRSIQLKHA-GKYVCMVQTSVDKL---SA-AADLIVRGP   84 (85)
T ss_pred             CCccEEEeccCCCCCcEEEecCCHHHC-EEEEEEEEcccCce---EE-EEEEEEecC
Confidence            3558877    3679999999999996 99999999998543   33 568988876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.40  E-value=3.8e-07  Score=56.76  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=34.4

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      .+++..++|+|+|.+|+.+|. +.|.|.+.|..+++.+.++
T Consensus        52 r~~~~~~~G~L~fs~v~~~D~-g~Y~C~A~n~~~~~~~~~~   91 (96)
T cd05727          52 RRFVSQTNGNLYIAKVEASDR-GNYSCFVSSPSSTKSVFSK   91 (96)
T ss_pred             CeEEeCCCCcEEEeecCHhhC-ceeEEEEEecccCCcccCC
Confidence            355555699999999999997 9999999999999977766

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.37  E-value=8.3e-07  Score=50.87  Aligned_cols=46  Identities=26%  Similarity=0.383  Sum_probs=36.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+++|.+.++|.|.|.+++.+|. +.|.|.+.|.+-.....   .+.|.|
T Consensus        28 ~~~~~~~~~~g~L~i~~~~~~D~-G~Y~C~a~N~~G~~~s~---~a~l~v   73 (74)
T cd05738          28 SNGRIKQLRSGALQIENSEESDQ-GKYECVATNSAGTRYSA---PANLYV   73 (74)
T ss_pred             CCCCEEEcCCcEEEECCCChhhC-EEEEEEEECCCCceEcc---cEEEEE
Confidence            45789999999999999999995 99999999997554322   446665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.34  E-value=7.5e-07  Score=51.28  Aligned_cols=36  Identities=25%  Similarity=0.531  Sum_probs=31.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ..+|+.+.++|.|.|.+++.+|. +.|.|.+.|.+-.
T Consensus        34 ~~~r~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~   69 (79)
T cd05734          34 LAGRIQLLSNGSLLIKHVLEEDS-GYYLCKVSNDVGA   69 (79)
T ss_pred             cCCCEEEecCCeEEECcCCcccC-EEEEEEEEeCCCC
Confidence            56789888999999999999995 9999999998643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.32  E-value=2e-06  Score=48.90  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.++.+...|.|.|.+++.+|. |.|.|.+.|.+
T Consensus        28 ~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~   60 (71)
T cd05723          28 SDYFKIVKEHNLQVLGLVKSDE-GFYQCIAENDV   60 (71)
T ss_pred             CCCEEEEecCCEEEEcCCcccC-EEEEEEEEcCC
Confidence            4578888999999999999996 99999999986

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.27  E-value=8.9e-07  Score=50.28  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|+.+.++|.|.|.+|+.+|. +.|.|.+.|++-
T Consensus        29 ~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~G   63 (73)
T cd04969          29 NSSRICIWPDGSLEILNVTKSDE-GKYTCFAENFFG   63 (73)
T ss_pred             cCCCEEECCCCeEEEccCChhHC-EEEEEEEECCCC
Confidence            35688889999999999999996 899999999963

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.26  E-value=1.5e-06  Score=50.56  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=33.3

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+|.|.|.+|+.+|+ |.|.|.+.|.+ |..  +. .++|.|..|
T Consensus        44 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~p   84 (85)
T cd04970          44 DSNGDLMIRNAQLKHA-GKYTCTAQTVV-DSL--SA-SADLIVRGP   84 (85)
T ss_pred             cccceEEEccCCHHhC-eeeEEEEecCC-CcE--EE-EEEEEEECC
Confidence            3578999999999996 99999999977 443  32 568998875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.21  E-value=4.1e-06  Score=49.56  Aligned_cols=39  Identities=26%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .|.|.|.||+.+|+ |.|.|.+.|.. |+...   .+.|.|.+|
T Consensus        46 ~~~L~I~~v~~~D~-G~YtC~A~n~~-g~~~~---~~~L~V~~~   84 (85)
T cd05854          46 IGDLVIVNAQLSHA-GTYTCTAQTVV-DSASA---SATLVVRGP   84 (85)
T ss_pred             EeEEEEccCChhhC-eEEEEEEecCC-CCEEE---EEEEEEECC
Confidence            68999999999996 99999999988 65443   458888764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.19  E-value=1.8e-06  Score=48.79  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=31.2

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+++|.+.++|.|.|.+|+.+|. |.|.|.+.|.+=
T Consensus        26 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G   60 (69)
T cd05746          26 ESGKFHISPEGYLAIRDVGVADQ-GRYECVARNTIG   60 (69)
T ss_pred             CCCCEEECCCCEEEECcCChhhC-EEEEEEEECCCC
Confidence            35789898999999999999996 999999999873

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.19  E-value=1.9e-06  Score=49.14  Aligned_cols=35  Identities=34%  Similarity=0.546  Sum_probs=30.6

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.++.+.++|.|.|.+|+.+|. +.|.|.+.|.+-
T Consensus        30 ~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G   64 (74)
T cd05745          30 VDRRHLVLSSGTLRISRVALHDQ-GQYECQAVNIVG   64 (74)
T ss_pred             CCCCeEEccCCeEEEeeCCHHhC-EEEEEEEEeCCC
Confidence            34578888999999999999995 999999999863

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.09  E-value=3.7e-06  Score=47.11  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+++.+.+.+.|.|.+|+.+|. |.|.|.+.|.+-
T Consensus        26 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   59 (69)
T cd05725          26 KGRAEILDDKSLKIRNVTAGDE-GSYTCEAENMVG   59 (69)
T ss_pred             CCcEEEeeCCEEEECcCChhHC-EEEEEEEEcCCC
Confidence            4678888999999999999996 999999999864

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.09  E-value=7.3e-06  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.++.+...|.|.|.+++.+|. +.|.|.+.|..-
T Consensus        42 ~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G   75 (86)
T cd05724          42 NERVRIVDDGNLLIAEARKSDE-GTYKCVATNMVG   75 (86)
T ss_pred             CCCEEEccCCEEEEeECCcccC-EEEEEEEEeccC
Confidence            4578888899999999999995 999999999763

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.08  E-value=9.3e-06  Score=47.49  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             CCeEEEeec--c--cEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521          8 GGKYVVLSS--G--DLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus         8 ~~ry~ilps--G--eL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ++||.+..+  |  .|.|.+++.+|+ |.|+|.+.|.. |+.
T Consensus        28 ~~r~~~~~~~~g~~~L~I~~~~~~D~-G~Y~C~A~N~~-G~~   67 (75)
T cd05892          28 TDRISLYQDNSGRVTLLIKNVNKKDA-GWYTVSAVNEA-GVA   67 (75)
T ss_pred             CCeEEEEEcCCCcEEEEECCCChhhC-EEEEEEEEcCc-CeE
Confidence            458888764  3  699999999996 99999999976 443

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.02  E-value=1.1e-05  Score=46.86  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|+.+..+|.|.|.|++.+|+ |.|.|++...-
T Consensus        48 ~~R~~~~~~~sL~I~~l~~~Ds-G~Y~c~v~~~~   80 (92)
T cd05741          48 SGRETIYPNGSLLIQNLTKEDS-GTYTLQIISTN   80 (92)
T ss_pred             CCeEEEcCCceEEEccCCchhc-EEEEEEEEcCC
Confidence            5799999999999999999996 99999999876

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.02  E-value=9.1e-06  Score=49.33  Aligned_cols=39  Identities=31%  Similarity=0.598  Sum_probs=33.0

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQA   47 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~   47 (66)
                      .++|+.+..+|   .|.|.+|+.+|. |.|+|.+.|. .|+...
T Consensus        43 ~~~r~~~~~~g~~~~L~I~~v~~~D~-G~Y~C~A~N~-~G~~~~   84 (92)
T cd05866          43 SSQRVVVQKEGVRSRLTIYNANIEDA-GIYRCQATDA-KGQTQE   84 (92)
T ss_pred             CCCCEEEEeCCCeeEEEEecCChHHC-EEEEEEEEcC-CCcEEE
Confidence            45688888888   799999999996 9999999999 566553

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.02  E-value=8.8e-06  Score=50.85  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      -.||..+.++|.|.|+||+.+|. |.|.|++.+.-
T Consensus        60 ~~gR~~~~~ngSL~I~~v~~~D~-G~Y~~~v~~~~   93 (105)
T cd05774          60 YSGRETIYPNGSLLIQNVTQKDT-GFYTLQTITTN   93 (105)
T ss_pred             cCCcEEEeCCCcEEEecCCcccC-EEEEEEEEeCC
Confidence            36899999999999999999996 99999998865

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>KOG3513|consensus

Probab=97.98  E-value=1.2e-05  Score=66.75  Aligned_cols=49  Identities=24%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      -.+|||.++++|.|-|.|++.+|+ |.|.|.+.|++-..   .+ -++|+|+++
T Consensus       468 ~~~~r~~i~edGtL~I~n~t~~Da-G~YtC~A~N~~G~a---~~-~~~L~Vkd~  516 (1051)
T KOG3513|consen  468 LQSGRIRILEDGTLEISNVTRSDA-GKYTCVAENKLGKA---ES-TGNLIVKDA  516 (1051)
T ss_pred             ccCceEEECCCCcEEecccCcccC-cEEEEEEEcccCcc---ce-EEEEEEecC
Confidence            457899999999999999999997 99999999987432   22 456666654

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.96  E-value=2.4e-05  Score=46.46  Aligned_cols=46  Identities=20%  Similarity=0.456  Sum_probs=35.1

Q ss_pred             CeEEEee--c-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          9 GKYVVLS--S-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~ilp--s-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +||.+..  .     ..|.|.++..+|. |.|.|.+.|.+ |+...   .++|.|.++
T Consensus        32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~-G~YtC~A~N~~-G~~~~---~~~L~V~~~   84 (88)
T cd05735          32 SRYLVSTKEVGDEVISTLQILPTVREDS-GFFSCHAINSY-GEDRG---IIQLTVQEP   84 (88)
T ss_pred             CcEEEEEecCCCcEEEEEEECCCCcccC-EEEEEEEEcCC-CcceE---EEEEEEeCC
Confidence            5887754  2     5699999999996 99999999998 44333   357888764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.95  E-value=1.9e-05  Score=44.79  Aligned_cols=36  Identities=36%  Similarity=0.613  Sum_probs=28.9

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      +++.+...+.|.|.+++.+|. +.|.|.+.|.. |+..
T Consensus        39 ~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~   74 (81)
T cd05765          39 GNVVVTNIGQLVIYNAQPQDA-GLYTCTARNSG-GLLR   74 (81)
T ss_pred             CCEEEccccEEEEccCCcccC-EEEEEEEecCC-ceEE
Confidence            345566678999999999996 99999999976 4433

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.90  E-value=3.7e-05  Score=46.80  Aligned_cols=41  Identities=32%  Similarity=0.535  Sum_probs=32.3

Q ss_pred             CCeEEEeec----ccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521          8 GGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus         8 ~~ry~ilps----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      +.|+.+..+    +.|.|.+|+.+|. |.|+|.+.|..-|+...+.
T Consensus        47 ~~r~~v~~~~~~~~~L~I~~v~~~D~-G~YtC~A~N~~~g~~~~s~   91 (96)
T cd05865          47 QQRISVVRNDDYSSTLTIYNANIDDA-GIYKCVVSNEDEGESEATV   91 (96)
T ss_pred             CCeEEEEeCCCCceEEEEeccChhhC-EEEEEEEEcCCCCcEEEEE
Confidence            346666543    6799999999996 9999999999877766543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.90  E-value=4.6e-05  Score=43.23  Aligned_cols=44  Identities=18%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..++.+.+ .+.|.|.+++.+|. +.|.|.+.|.. |+.  +. .++|.|
T Consensus        30 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~A~N~~-G~~--~~-~~~l~V   74 (75)
T cd05763          30 ERRMHVMPEDDVFFIVDVKIEDT-GVYSCTAQNTA-GSI--SA-NATLTV   74 (75)
T ss_pred             ccceEEecCCCEEEEeeCCcccC-EEEEEEEEcCC-CEE--Ee-eEEEEE
Confidence            34677765 57899999999995 99999999984 443  22 345554

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.89  E-value=6.1e-05  Score=43.38  Aligned_cols=45  Identities=36%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +++.+.. .+.|.|.+++.+|. |.|.|.+.|.+ |+...+. ...|.|
T Consensus        29 ~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~s~~-~~~l~v   74 (77)
T cd05760          29 GNYSVSSKERTLTLRSAGPDDS-GLYYCCAHNAF-GSVCSSQ-NFTLSI   74 (77)
T ss_pred             ccEEEeCCCCEEEEeeCCcccC-EEEEEEEEeCC-CeEeeCc-eEEEEE
Confidence            4555543 46899999999995 99999999976 4444333 334444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.87  E-value=5.6e-05  Score=45.82  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS   48 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S   48 (66)
                      ...+.|.|.+|+.+|+ |.|.|.+.|..-+....-
T Consensus        49 ~~~~~L~I~~v~~~Ds-G~YtC~~~n~~~~~~~~~   82 (92)
T cd05757          49 VKGSKLLIQNVTEEDA-GNYTCKLTFTHNGKQYNV   82 (92)
T ss_pred             ecCCEEEEeeCChhhC-EEEEEEEEecCCCEEEEE
Confidence            3789999999999997 999999999877765543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.85  E-value=4.6e-05  Score=43.92  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..||.+..++    .|.|.+++.+|. |.|.|.+.|..
T Consensus        28 ~~r~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   64 (75)
T cd05744          28 TDRISLYQDNCGRICLLIQNANKEDA-GWYTVSAVNEA   64 (75)
T ss_pred             CCcEEEEEcCCCeEEEEECCCCcccC-EEEEEEEEcCC
Confidence            3577776654    399999999996 99999999987

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=97.85  E-value=3.3e-05  Score=44.96  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521          8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus         8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      .+|+.+...+    .|.|.+|+.+|+ |.|.|.+.|.+ |+.
T Consensus        28 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~-G~~   67 (75)
T cd05893          28 TDRVSMHQDNCGYICLLIQGATKEDA-GWYTVSAKNEA-GIV   67 (75)
T ss_pred             CCeEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEcCC-CEE
Confidence            4678886654    599999999996 99999999986 543

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.81  E-value=6.7e-05  Score=42.51  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CeEEEeeccc-EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSSGD-LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilpsGe-L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++.+.++|. |.|.+++.+|. +.|.|.+.|.+-.. .  . ...|.|.+
T Consensus        30 ~~~~~~~~~~~l~I~~~~~~D~-G~Y~C~a~N~~G~~-~--~-~~~l~V~~   75 (76)
T cd05736          30 KQLTLIANGSELHISNVRYEDT-GAYTCIAKNEAGVD-E--D-ISSLFVED   75 (76)
T ss_pred             ccEEEeCCCCEEEECcCCcccC-EEEEEEEEcCCCCc-c--e-EEEEEEEc
Confidence            5777777774 99999999995 99999999986432 2  2 44777754

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.80  E-value=5.8e-05  Score=45.43  Aligned_cols=46  Identities=15%  Similarity=0.278  Sum_probs=34.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++++.+ ..+.|.|.+++.+|. +.|.|.+.++.-++...   ...|.|-+
T Consensus        45 ~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~~~~~~~~~~---~~~l~v~~   90 (91)
T cd05871          45 EERLIH-TERGLLLRSLQRSDA-GVYTCTAVEHSFSQTLA---KYTLHVIE   90 (91)
T ss_pred             cccEEE-ecCeEEEeeCChhHC-EEEEEEEEccCCeEEEE---EEEEEEec
Confidence            456765 456799999999997 99999999777676655   34666543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.80  E-value=3.2e-05  Score=43.54  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ...++.+.+.|.|.|.+++.+|. +.|.|.+.|.+
T Consensus        30 ~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~   63 (74)
T cd05764          30 NSSRTLVYDNGTLDILITTVKDT-GSFTCIASNAA   63 (74)
T ss_pred             CCCeEEEecCCEEEEEECChhhC-EEEEEEEECCC
Confidence            34678888999999999999995 99999999986

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.79  E-value=2.6e-05  Score=45.69  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=32.1

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS   48 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S   48 (66)
                      .+|.+ ..+.|.|.||+.+|+ |.|.|.+.|+..|+++.-
T Consensus        29 ~~~~~-~~~~L~I~~v~~~D~-G~YtC~a~~~~~~~~~~~   66 (72)
T cd07702          29 SRYHV-DGYSLVIKDVTEEDA-GIYTILLGIKQYNLFKNL   66 (72)
T ss_pred             cEEEe-CCCEEEECcCCHHHC-EEEEEEEEccccceEeeE
Confidence            56665 345899999999997 999999999999988754

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=97.71  E-value=5.8e-05  Score=45.07  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=29.2

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ++||.+..   .+.|.|.||+.+|. +.|.|.+.|.+-.
T Consensus        52 ~~r~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~   89 (98)
T cd05870          52 DGRIEVKGQHGESSLHIKDVKLSDS-GRYDCEAASRIGG   89 (98)
T ss_pred             CceEEEeecCCeeEEEEeeCCcCCC-EEEEEEEeccCCc
Confidence            46888764   35799999999996 9999999998754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.69  E-value=0.00014  Score=42.84  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.6

Q ss_pred             CeEEEeecc-cEEEeecCCCCCCcceeEEeecccc
Q psy10521          9 GKYVVLSSG-DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         9 ~ry~ilpsG-eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+|.+...| .|.|.+|+.+| .+.|.|.+.|.+-
T Consensus        49 ~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~~G   82 (95)
T cd05730          49 EKYSFNEDGSEMTILDVDKLD-EAEYTCIAENKAG   82 (95)
T ss_pred             CEEEEeCCCCEEEECCCChhh-CEEEEEEEEcCCC
Confidence            567666655 59999999999 5999999999984

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.68  E-value=9.8e-05  Score=43.99  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=27.6

Q ss_pred             CeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          9 GKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         9 ~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +++.+..++    .|.|.+|+.+|. |.|+|.+.|.+-+.
T Consensus        45 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~g~~   83 (92)
T cd04977          45 QQISVVQNDDVRSTLTIYNANIEDA-GIYKCVATDAKGTE   83 (92)
T ss_pred             CCEEEEeCCCCEEEEEEecCCcccC-EEEEEEEEcCCCCc
Confidence            455555444    799999999996 99999999986553

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.68  E-value=9.1e-05  Score=44.42  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +++.+.. .+.|.|.+|+.+|. |.|+|.+.|.+-..  .|. +..|.|
T Consensus        46 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~--~S~-~~~L~V   90 (91)
T cd05740          46 PRLQLSNDNRTLTFNNVTRSDT-GHYQCEASNEVSNM--TSD-PYILNV   90 (91)
T ss_pred             CCEEEeCCCCEEEECcCChhhC-EEEEEEEEcCCCCE--Eee-eEEEEe
Confidence            4555554 46899999999996 99999999998432  233 556665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.63  E-value=0.00012  Score=43.68  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=35.2

Q ss_pred             cCCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~   57 (66)
                      ..+||.+..+     -.|.|.|++.+|. +.|.|++.+.-- ......+ +.+|.|.
T Consensus        55 ~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~g~-gt~l~V~  109 (109)
T cd04983          55 EKGRFSATLDKSRKSSSLHISAAQLSDS-AVYFCALSESGGTGKLTFGK-GTRLTVE  109 (109)
T ss_pred             cCCcEEEEEcccCCEEEEEECCCCHHHC-EEEEEEEecCCCCcceEECC-CEEEEEC
Confidence            3578877643     3799999999996 999999987642 2333343 7788763

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.62  E-value=7.1e-05  Score=43.35  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+.|.|.+|+.+|. |.|.|.+.|.+..
T Consensus        48 ~s~L~I~~v~~~Ds-G~Y~C~a~n~~~~   74 (84)
T cd05742          48 SSTLTIPNATLKDS-GTYTCAASSGTMD   74 (84)
T ss_pred             EEEEEECCCChhhC-EEEEEEEccCCCc
Confidence            56899999999996 9999999999744

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.60  E-value=7.7e-05  Score=42.59  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=27.6

Q ss_pred             eEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521         10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus        10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ++. ..+|.|.|.+++.+|. +.|.|.+.|.. |+..
T Consensus        35 ~~~-~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~   68 (76)
T cd05867          35 RRH-VSSGALILTDVQPSDT-AVYQCEARNRH-GNLL   68 (76)
T ss_pred             eEE-eeCCEEEECCCChhhC-EEEEEEEECCC-CeEE
Confidence            444 4689999999999996 99999999974 5543

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.60  E-value=0.00013  Score=42.69  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=29.3

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+++.+..   .+.|.|.+|+.+|. |.|.|++.|.+-..
T Consensus        50 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~   88 (96)
T cd05732          50 DGRIVVRGHARVSSLTLKDVQLTDA-GRYDCEASNRIGGD   88 (96)
T ss_pred             cceEEEeCCccEEEEEECcCCcCcC-EEeEEEEEeCCCCc
Confidence            45777754   35899999999996 99999999998653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.60  E-value=0.00014  Score=52.43  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ++|+...++|.|.|.||+.+|+ |.|.|.+.|...+..
T Consensus       168 ~~r~~~~~~~~L~i~~v~~~d~-G~Y~C~~~n~~g~~~  204 (326)
T PHA02785        168 NKRLKQRTPGIITIEDVRKNDA-GYYTCVLKYIYGDKT  204 (326)
T ss_pred             CcceEecCCCeEEEeecChhhC-eEEEEEEEeccCCEE
Confidence            4688888999999999999996 999999999877754

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=97.59  E-value=7.9e-05  Score=42.51  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=27.3

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ....+.|.|.|++.+|+ |.|.|.+.|++-+..
T Consensus        31 ~~~~~~L~I~~v~~~D~-G~YtC~a~N~~g~~~   62 (71)
T cd04976          31 KKSGHSLTIKDVTEEDA-GNYTVVLTNKQAKLE   62 (71)
T ss_pred             EcCCCEEEECcCCHHHC-EEEEEEEEcCCccEE
Confidence            45678999999999996 999999999886643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.59  E-value=0.00016  Score=42.28  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA   47 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~   47 (66)
                      .++.+.+ +.|.|.+++.+|. |.|+|.+.+..=+++..
T Consensus        44 ~~~~~~~-~~L~I~~~~~~D~-G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979          44 ERLLVTE-DGLLIRSVSPADA-GVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             ceEEEcC-CCEEEccCCHHHC-EEEEEEEecCccceeEe
Confidence            4666654 5699999999996 99999999875444443

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.58  E-value=7.9e-05  Score=42.81  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|+.+...   +.|.|.||+.+|. +.|.|.+.|.+-
T Consensus        30 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   66 (78)
T cd05743          30 SARVSITSEGGYGTLTIRDVKESDQ-GAYTCEAINTRG   66 (78)
T ss_pred             CCCEEEEECCCEEEEEECCCChHHC-EEEEEEEEecCC
Confidence            456766543   6799999999995 999999999764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.55  E-value=7.1e-05  Score=43.60  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=29.3

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ...|.|.|.+|+.+|. +.|.|.+.|.+-. ...   .++|.|
T Consensus        50 ~~~~~L~i~~v~~~D~-G~Y~C~a~N~~G~-~~~---~~~l~V   87 (88)
T cd04968          50 MSGAVLKIPNIQFEDE-GTYECEAENIKGK-DTH---QGRIYV   87 (88)
T ss_pred             EeCCEEEECCCCcccC-EEEEEEEEECCCc-EEE---EEEEEE
Confidence            5789999999999995 9999999998543 222   346655

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.55  E-value=0.00016  Score=42.99  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=34.6

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..++.   |.|.+++.+|. +.|.|.+.+.  .+....+ +.+|+|
T Consensus        51 ~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~--~~~~fg~-gT~L~V   98 (98)
T cd04984          51 PDRFSGSKSGNTASLTISGAQTEDE-ADYYCQVWDS--NSYVFGG-GTKLTV   98 (98)
T ss_pred             CCCEEEEccCCEEEEEECCCChhhC-EEEEEEEccC--CCCEECC-CEEEeC
Confidence            45888876555   99999999996 9999999864  4555565 777765

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.54  E-value=0.00028  Score=41.69  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CeEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .++.++++|.|.|.++     +.+| .+.|+|.+.|.--|+.. |. .++|+|
T Consensus        46 ~~~~~~~~~~l~i~~v~~~~~~~~D-~G~Y~C~a~N~~~G~~~-s~-~~~l~v   95 (95)
T cd05722          46 ERRQQLPNGSLLITSVVHSKHNKPD-EGFYQCVAQNDSLGSIV-SR-TARLTV   95 (95)
T ss_pred             cceEEccCCeEEEeeeeccCCCCCc-CEEEEEEEECCccCcEE-Ee-eeEEeC
Confidence            4578889999999998     4677 49999999998345543 33 455543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.52  E-value=7e-05  Score=44.56  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++++|.+|+.+|+ |.|+|+..+..++-...|+ +..|.|+
T Consensus        52 ~~~f~i~~v~~~~~-G~Y~C~~~~~~~~~S~~Sd-~lel~Vt   91 (91)
T cd05751          52 KAKFFIPSMKREHA-GRYRCYYRSGVALWSEPSD-PLELVVT   91 (91)
T ss_pred             eEEEEccCCChhHC-EEEEEEEECCCCccCCCCC-cEEEEeC
Confidence            56799999999996 9999999997644333444 7777774

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.52  E-value=0.00013  Score=43.48  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             CCeEEEeec-------ccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSS-------GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilps-------GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ++||.+...       +.|.|.+|+.+|..+.|.|.+.|.+-
T Consensus        48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            368888764       37999999998866999999999864

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.51  E-value=0.0001  Score=41.88  Aligned_cols=28  Identities=29%  Similarity=0.577  Sum_probs=24.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      .+.|.|.+++.+|. |.|.|++.|.+ |+.
T Consensus        43 ~~~L~I~~~~~~Ds-G~Y~C~a~N~~-g~~   70 (76)
T cd05895          43 SSELQISKASLADN-GEYKCMVSSKL-GND   70 (76)
T ss_pred             EEEEEECcCCcccC-EEEEEEEEeCC-Cce
Confidence            46799999999996 99999999998 443

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.51  E-value=0.00021  Score=43.09  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521          9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      +|+.+.+ ++.|.|+|++.+|. |.|.|++.+.- |+..
T Consensus        52 ~R~~~~~~~~sL~I~~~~~~Ds-G~Y~c~v~~~~-~~~~   88 (97)
T cd05775          52 ERVNFSQNDYSLQISNLKMEDA-GSYRAEINTKN-GVTI   88 (97)
T ss_pred             eeEEecCCceeEEECCCchHHC-EEEEEEEEcCC-CCeE
Confidence            5787876 59999999999996 99999999876 4443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.51  E-value=0.00013  Score=43.42  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+++.+..   .+.|.|.+|+.+|. |.|.|.+.|.+=.
T Consensus        51 ~~~~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~   88 (97)
T cd05869          51 DGHIVVRSHARVSSLTLKYIQYTDA-GEYLCTASNTIGQ   88 (97)
T ss_pred             CccEEEEcCccEEEEEEecCccCcC-EEEEEEEecCCCC
Confidence            35666643   36899999999996 9999999998654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.51  E-value=0.00011  Score=41.56  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ....|.|.|.+++.+|. |.|.|.+.|.+-
T Consensus        32 ~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   60 (71)
T cd05876          32 LNNNKTLQLDNVLESDD-GEYVCTAENSEG   60 (71)
T ss_pred             EcCCCEEEEcccCHHhC-EEEEEEEEcCCC
Confidence            45689999999999995 999999999984

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.47  E-value=0.00021  Score=42.10  Aligned_cols=33  Identities=12%  Similarity=0.122  Sum_probs=28.1

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.||.+.+.   +.|.|.+++.+|. |.|.|.+.|.+
T Consensus        47 ~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~   82 (92)
T cd05747          47 SQRHQITSTEYKSTFEISKVQMSDE-GNYTVVVENSE   82 (92)
T ss_pred             CCcEEEEEcCCeeEEEECCCCcccC-EeEEEEEEcCC
Confidence            457887664   5899999999996 99999999976

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.46  E-value=0.00023  Score=36.76  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=23.9

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ....+.|.|.+++.+|. +.|+|++.|..
T Consensus        35 ~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~   62 (63)
T smart00408       35 SASGSTLTIKSVSLEDS-GEYTCVAENSA   62 (63)
T ss_pred             ecCCcEEEEeeCCcccC-EEEEEEEecCC
Confidence            34578999999999996 99999998863

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.46  E-value=0.00025  Score=41.99  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=29.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +..|.|.+++.+|. |.|.|.+.|.. |  ..+. .++|+|.|
T Consensus        49 ~s~L~I~~~~~~Ds-G~Y~C~a~n~~-~--~~~~-~t~~~V~~   86 (86)
T cd05862          49 SSTLTIENVTLSDL-GRYTCTASSGQ-M--IAKN-STIVIVHE   86 (86)
T ss_pred             eeEEEEecCCcccC-EEEEEEEeecc-e--Eecc-cEEEEEeC
Confidence            56899999999996 99999998842 2  2232 56888764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=97.44  E-value=0.00032  Score=39.28  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=27.0

Q ss_pred             EEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         11 YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        11 y~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ......+.|.|.+|+.+|. +.|.|.+.|. -|+.
T Consensus        35 ~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~-~G~~   67 (76)
T cd04978          35 RRRVDGGTLILSNVQPNDT-AVYQCNASNV-HGYL   67 (76)
T ss_pred             eEEccCCEEEECCCChhhC-EEEEEEEEcc-CCeE
Confidence            3445689999999999995 9999999998 3443

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.44  E-value=0.00019  Score=42.30  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEE
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v   56 (66)
                      .+|+.+..++     .|.|.||+.+|. |.|.|.+.+... .+...++ +.+|.|
T Consensus        53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~~~~~-gt~l~v  105 (105)
T cd00099          53 KGRFSGTRDSSKSSFTLTISSLQPEDS-AVYYCAVSLSGGTYKLYFGQ-GTRLTV  105 (105)
T ss_pred             CCcEEEEEeccCCEEEEEECCCCHHHC-EEEEEEEecCCCceeeEECC-CEEEeC
Confidence            4677776443     799999999996 999999986653 2444454 667654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.43  E-value=0.0002  Score=41.66  Aligned_cols=46  Identities=24%  Similarity=0.500  Sum_probs=33.9

Q ss_pred             cCCeEEEeeccc-----EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          7 VGGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         7 ~~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      -.+|+.+..++.     |.|.|++.+|. |.|.|++...  ++..... ..+|.|
T Consensus        64 ~~~r~~~~~~~~~~~~sL~i~~l~~~Ds-G~Y~C~v~~~--~~~~~~~-~~~L~V  114 (114)
T PF07686_consen   64 YSGRFTFSGNGSQNNFSLTIKNLQPSDS-GTYFCQVSTS--NEQSFGN-GTKLTV  114 (114)
T ss_dssp             ETTTEEEEEETTTTEEEEEESSESGGGE-EEEEEEEEES--SEEEEEE-EEEEEE
T ss_pred             eeeeeeeeecccCCeEEEEECCCCcCcC-EEEEEEEEEC--CCCEECC-cEEEEC
Confidence            356778777777     99999999996 9999999988  3333333 445544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.42  E-value=0.00048  Score=42.36  Aligned_cols=25  Identities=12%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             ccEEEeecCCCCCCcceeEEeecccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|.|.+|..+|+ |.|+|.+.|.+-
T Consensus        65 ~~L~i~~v~~~D~-G~Ytc~A~N~~G   89 (101)
T cd04975          65 SELKLVRLKESEA-GTYTFLASNSDA   89 (101)
T ss_pred             EEEEEeecCHhhC-eeEEEEEECCCc
Confidence            6799999999996 999999999974

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.41  E-value=0.00021  Score=41.68  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=27.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ++++.+ .+|.|.|.+++.+|. +.|+|.+.|.+-
T Consensus        43 ~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a~N~~G   75 (85)
T cd05728          43 ENRIEV-EAGDLRITKLSLSDS-GMYQCVAENKHG   75 (85)
T ss_pred             CCeEEE-eCCEEEEeeCCHHHC-EEEEEEEECCCC
Confidence            345554 689999999999994 999999999764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.41  E-value=0.00011  Score=43.37  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .|.|.|.+++.+|. |.|+|.|.|.+-
T Consensus        45 ~~~L~I~~~~~~D~-G~YtC~A~N~~G   70 (81)
T cd04971          45 HGCLQFDNPTHVNN-GNYTLVASNEYG   70 (81)
T ss_pred             EEEEEECCCCcccC-eEEEEEEEeCCC
Confidence            56799999999996 999999999873

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.39  E-value=0.00016  Score=42.78  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=22.6

Q ss_pred             ccEEEeecCCCCCCcceeEEeecccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|.|.||+.+|+ |.|.|.+.|.+=
T Consensus        55 ~~L~I~~v~~~D~-G~Y~C~A~N~~G   79 (90)
T cd04974          55 EVLYLRNVSFDDA-GEYTCLAGNSIG   79 (90)
T ss_pred             ceEEEeccccccC-cEEEEEeecccC
Confidence            5799999999996 999999999864

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.37  E-value=0.00037  Score=40.95  Aligned_cols=38  Identities=16%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +..|.|.+++.+|. |.|.|.+.|...++....  ...|.|
T Consensus        45 ~s~L~I~~~~~~Ds-G~Y~C~a~n~~~~~~~~~--sv~i~V   82 (84)
T cd05861          45 RSTLTFPHATVEDS-GTYECAAHESTQDQKAFK--KVNITV   82 (84)
T ss_pred             EEEEEECCCCcCCC-EEEEEEEEECccCcceeE--EEEEEE
Confidence            45799999999996 999999999877654422  335544

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=97.34  E-value=0.0006  Score=39.16  Aligned_cols=30  Identities=13%  Similarity=0.288  Sum_probs=24.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ..+.|.|.+|+.+|+ +.|.|.+.|.+ |+..
T Consensus        39 ~~~~l~i~~v~~~D~-G~Y~C~A~N~~-G~~~   68 (76)
T cd05868          39 DGDTIIFSKVQERSS-AVYQCNASNEY-GYLL   68 (76)
T ss_pred             cCCEEEECCCCHhhC-EEEEEEEEcCC-CEEE
Confidence            345899999999996 99999999987 4443

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.33  E-value=0.00025  Score=43.08  Aligned_cols=30  Identities=37%  Similarity=0.730  Sum_probs=26.1

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +||.+ ..|.|.|.||+.+|+ |.|.|.+.+.
T Consensus        41 ~r~~~-~~~~L~I~nv~~~Ds-G~Y~C~a~e~   70 (87)
T cd05873          41 AKYLL-YRDGLLIFNASEADA-GRYQCLSVEK   70 (87)
T ss_pred             ceEEE-ECCcEEEeCCCHHHC-EEEEEEEEec
Confidence            57755 678999999999996 9999999976

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.33  E-value=0.00033  Score=40.45  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.++.+. .+.|.|.+++.+|. |.|.|.+.|.+
T Consensus        37 ~~~~~~~-~~~L~I~~~~~~Ds-G~Y~C~a~n~~   68 (79)
T cd04973          37 NNRTRIT-GEEVQIKDAVPRDS-GLYACVTSSPS   68 (79)
T ss_pred             CceEEEe-CCEEEECCCChhhC-EEEEEEEeCCC
Confidence            4566653 56799999999996 99999999985

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.33  E-value=0.00038  Score=42.39  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=26.2

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ++||.+..    .+.|.|.||+.+|+ |.|.|.+..-
T Consensus        49 ~~r~~~~~~~~~~~~L~I~nV~~~D~-G~YtC~~~t~   84 (95)
T cd05882          49 DNRIQLVKSTPTELIISISNVQLSDE-GEYTCSIFTM   84 (95)
T ss_pred             CCeEEEEeCCCceEEEEECCCCcccC-EEEEEEEEee
Confidence            46777652    46899999999996 9999999873

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.32  E-value=0.00036  Score=41.01  Aligned_cols=29  Identities=28%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             EeecccEEEeecCC-CCCCcceeEEeecccc
Q psy10521         13 VLSSGDLYVFNATP-NDGYKSYRCRTVNKIT   42 (66)
Q Consensus        13 ilpsGeL~I~nv~~-~D~~~~Y~C~~~~~lT   42 (66)
                      ...+|.|.|+++.. +|. +.|+|++.|.+-
T Consensus        54 ~~~~~~L~i~~~~~~~d~-G~Y~C~a~N~~G   83 (91)
T cd04967          54 SLVGGNLVISNPSKAKDA-GRYQCLASNIVG   83 (91)
T ss_pred             EEECCEEEEecCCccCCC-EEEEEEEEcCCC
Confidence            34689999999985 785 999999999864

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.32  E-value=0.00032  Score=41.38  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             CCeEEEeec-c---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilps-G---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +++|.+... |   .|.|.+++.+|. |.|.|.+.|.+-
T Consensus        45 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   82 (92)
T cd05737          45 SDHYNVKVEQGKYASLTIKGVSSEDS-GKYGIVVKNKYG   82 (92)
T ss_pred             CCCEEEEEcCCCEEEEEEccCChhhC-EEEEEEEEECCC
Confidence            456666543 3   699999999996 999999999764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.31  E-value=0.00061  Score=40.23  Aligned_cols=37  Identities=30%  Similarity=0.529  Sum_probs=28.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..+.|.|.||+.+|. |.|.|.+.|.+-.. ..   .++|.|
T Consensus        51 ~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~~-~~---~~~l~V   87 (88)
T cd05851          51 SGAVLKIFNIQPEDE-GTYECEAENIKGKD-KH---QARVYV   87 (88)
T ss_pred             CCCEEEECcCChhhC-EEEEEEEEcCCCce-EE---EEEEEE
Confidence            456899999999995 99999999997543 21   346655

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.31  E-value=0.00041  Score=41.68  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             CCeEEEeecccEEEeecC-CCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNAT-PNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~-~~D~~~~Y~C~~~~~lT   42 (66)
                      +++| .+.+|.|.|.++. .+|. |.|.|.+.|.+-
T Consensus        49 ~~~~-~~~~g~L~I~~~~~~~D~-G~Y~C~A~N~~G   82 (93)
T cd05849          49 NDRY-SMVGGNLVINNPDKYKDA-GRYVCIVSNIYG   82 (93)
T ss_pred             CCeE-EEECCEEEECcCCcCCCC-EEEEEEEEeCcc
Confidence            3466 4578999999996 5785 999999999864

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.29  E-value=0.00045  Score=41.25  Aligned_cols=31  Identities=32%  Similarity=0.658  Sum_probs=25.1

Q ss_pred             eEEEeecccEEEeecC-CCCCCcceeEEeecccc
Q psy10521         10 KYVVLSSGDLYVFNAT-PNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        10 ry~ilpsGeL~I~nv~-~~D~~~~Y~C~~~~~lT   42 (66)
                      +|. +.+|.|.|.++. .+| .|.|+|.+.|.+-
T Consensus        52 ~~~-~~~g~L~I~~~~~~~D-~G~Y~C~A~N~~G   83 (94)
T cd05850          52 RYT-LVAGNLVINNPQKARD-AGSYQCLAINRCG   83 (94)
T ss_pred             eEE-EECCeEEEccCCccCc-CEEEEEEEEcCcC
Confidence            444 468999999976 578 4999999999875

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=97.28  E-value=0.00058  Score=38.40  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             cCCeEEEee---cccEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .++++.+..   .+.|.|.+++.+|. |.|.|.+.|.+-
T Consensus        27 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G   64 (74)
T cd05748          27 LSGRVQIETTASSTSLVIKNAERSDS-GKYTLTLKNPAG   64 (74)
T ss_pred             CCCeEEEEECCCeEEEEECCCCcCcC-EEEEEEEECCCc
Confidence            345677654   45799999999996 999999999863

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.28  E-value=0.00041  Score=40.99  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=28.4

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ++|+.+..   .+.|.|.+++.+|. |.|.|.+.|.+=.
T Consensus        40 ~~r~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~N~~G~   77 (86)
T cd05894          40 EGRVRVESYKDLSSFVIEGAEREDE-GVYTITVTNPVGE   77 (86)
T ss_pred             CCeEEEEEcCCeEEEEECCCccCcC-EEEEEEEEeCCCc
Confidence            45777754   36799999999996 9999999998643

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=97.27  E-value=0.00023  Score=41.10  Aligned_cols=29  Identities=28%  Similarity=0.379  Sum_probs=24.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..+.|.|.++..+|. |.|.|.+.|.+-..
T Consensus        32 ~~~~L~I~~v~~~D~-G~YtC~a~N~~G~~   60 (70)
T cd05864          32 RGVHLTIYEVTEKDA-GNYTVVLTNPITKE   60 (70)
T ss_pred             cCCEEEECcCCHHHC-EEEEEEEEECCCce
Confidence            356899999999996 99999999998543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG4221|consensus

Probab=97.27  E-value=0.00048  Score=58.41  Aligned_cols=49  Identities=24%  Similarity=0.412  Sum_probs=38.4

Q ss_pred             CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +.+++|+.++|+|.|.|.+++..|. +.|||.+.+.-...+  |+ -+.|.|.
T Consensus       181 l~~~~r~i~lpsG~L~I~~~qp~d~-g~yrc~vt~g~~~r~--S~-~a~ltv~  229 (1381)
T KOG4221|consen  181 LPLDSRVIVLPSGALEISGLQPSDT-GEYRCVVTGGASQRT--SN-EAELTVL  229 (1381)
T ss_pred             ccCCCcEEEcCCCcEEecccccCCC-ceEEEEEecCCcCCc--cc-eeEEEec
Confidence            3456799999999999999999996 999999987655544  44 4455554

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.24  E-value=0.0004  Score=41.56  Aligned_cols=27  Identities=33%  Similarity=0.625  Sum_probs=23.4

Q ss_pred             eecccEEEeecC-CCCCCcceeEEeeccc
Q psy10521         14 LSSGDLYVFNAT-PNDGYKSYRCRTVNKI   41 (66)
Q Consensus        14 lpsGeL~I~nv~-~~D~~~~Y~C~~~~~l   41 (66)
                      ..+|.|.|.++. .+|. |.|+|.+.|.+
T Consensus        55 ~~~g~L~i~~~~~~~D~-G~Y~C~A~N~~   82 (94)
T cd05848          55 LIDGNLIISNPSEVKDS-GRYQCLATNSI   82 (94)
T ss_pred             eeCCeEEEccCCccCcC-EEEEEEEEcCC
Confidence            468999999986 5785 99999999987

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.23  E-value=0.00064  Score=40.12  Aligned_cols=33  Identities=12%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++||.+..    ++.|.|.||+.+|. +.|.|++....
T Consensus        49 ~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~   85 (95)
T cd05717          49 DNRIQLVNFSANELSISISNVSLSDE-GRYTCSLYTMP   85 (95)
T ss_pred             cCcEEEEcCCCCeeEEEEccCCcccC-EEEEEEEecCC
Confidence            46888742    35699999999996 99999998654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.22  E-value=0.00027  Score=39.00  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ..+.|.|.+|+.+|. |.|.|.+.|..-
T Consensus        34 ~~~~L~i~~v~~~D~-G~Y~C~a~N~~G   60 (71)
T cd05731          34 FNKTLKIDNVSEEDD-GEYRCTASNSLG   60 (71)
T ss_pred             CCCEEEECCCCHHHC-EEEEEEEEeCCc
Confidence            467899999999995 999999999864

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.21  E-value=0.00055  Score=41.29  Aligned_cols=32  Identities=9%  Similarity=0.242  Sum_probs=26.4

Q ss_pred             cCCeEEEe----ecccEEEeecCCCCCCcceeEEeec
Q psy10521          7 VGGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         7 ~~~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .++||.+.    ..+.|.|.||+.+|+ |.|.|++..
T Consensus        48 ~~~r~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~t   83 (95)
T cd07701          48 RDNRIELVRASWHELSISISDVSLSDE-GQYTCSLFT   83 (95)
T ss_pred             cCCCEEEEECCCCcEEEEECcCCcccC-EEEEEEeEe
Confidence            35788774    236799999999996 999999997

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=97.21  E-value=0.00029  Score=40.68  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=25.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+.|.|.+|..+|+ |.|.|.+.|.+-+.
T Consensus        30 ~~~L~i~~v~~~D~-G~YtC~a~N~~g~~   57 (67)
T cd05863          30 QHSLQIKDVTEASA-GTYTLVLWNSAAGL   57 (67)
T ss_pred             cCEEEECCCCHHHC-EEEEEEEEECCccE
Confidence            56899999999996 99999999997754

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.19  E-value=0.0005  Score=41.40  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +||.+..++   .|.|.|++.+|. +.|.|++.+-  .+....+ +.+|.|
T Consensus        60 ~r~~~~~~~~~~~L~I~~~~~~Ds-g~Y~Ca~~~~--~~~~fg~-gT~L~v  106 (106)
T cd04980          60 SRFSGSGSGTDFTLTISRVEPEDA-AVYYCQQYGT--FPYTFGG-GTKLEI  106 (106)
T ss_pred             CCEEEeccCCEEEEEECCCChHHC-EEEEEEEeCC--CCCEECC-CEEEeC
Confidence            577775543   499999999996 9999999753  3455554 666654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.18  E-value=0.00076  Score=40.83  Aligned_cols=29  Identities=31%  Similarity=0.541  Sum_probs=25.5

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ++.|.|+||+.+|. |.|.|.+.+.=-|..
T Consensus        63 ~~sL~I~nv~~sD~-GtY~C~v~~~p~g~~   91 (100)
T cd05888          63 DGALILRNAVQADE-GKYKCRVITFPAGNF   91 (100)
T ss_pred             ceEEEEecCccccc-eEEEEEEEeCCCCCe
Confidence            77899999999996 999999998767753

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.17  E-value=0.0014  Score=38.33  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+|..+..    ++.|.|+||+.+|+ |.|.|++...-.|.
T Consensus        49 ~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~g~   88 (98)
T cd05718          49 EGRVSFLNSSLEDATISISNLRLEDE-GNYICEFATFPQGN   88 (98)
T ss_pred             CceEEEeCCCCCceEEEEccCCcccC-EEEEEEEEeCCCCc
Confidence            45555443    57999999999997 99999987543343

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.15  E-value=0.00087  Score=38.82  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=28.0

Q ss_pred             cCCeEEE-eecccEEEeecCC---CCCCcceeEEeecccc
Q psy10521          7 VGGKYVV-LSSGDLYVFNATP---NDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~i-lpsGeL~I~nv~~---~D~~~~Y~C~~~~~lT   42 (66)
                      .++++.+ ..+|.|.|.+++.   +|..+.|.|.+.|.+-
T Consensus        28 ~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05875          28 KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLG   67 (77)
T ss_pred             CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence            3567777 4789999999853   4445999999999975

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=97.12  E-value=0.00058  Score=41.32  Aligned_cols=47  Identities=17%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.++.+..   ...|.|.+++.+|. |.|.|.+.|.+=....    .+.|.|.+.
T Consensus        44 ~~~~~~~~~~~~s~L~I~~~~~~D~-G~Ytc~a~N~~G~~~~----~~~l~V~~~   93 (98)
T cd05762          44 GEGIKIENTENSSKLTITEGQQEHC-GCYTLEVENKLGSRQA----QVNLTVVDK   93 (98)
T ss_pred             CCcEEEEecCCeeEEEECCCChhhC-EEEEEEEEcCCCceeE----EEEEEEecC
Confidence            44666653   67799999999996 9999999998754322    347777663

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.11  E-value=0.00042  Score=39.64  Aligned_cols=38  Identities=32%  Similarity=0.544  Sum_probs=29.8

Q ss_pred             CCeEEEe---ecccEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521          8 GGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQA   47 (66)
Q Consensus         8 ~~ry~il---psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~   47 (66)
                      +++|.+.   ....|.|.+|+.+|+ |.|+|.+.|. .|+...
T Consensus        44 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~-~g~~~~   84 (90)
T PF07679_consen   44 SQRYQIESDGGSSSLTIKNVTREDA-GTYTCVASNS-SGEATA   84 (90)
T ss_dssp             SSSEEEEEETTEEEEEESSESGGGS-EEEEEEEEET-TEEEEE
T ss_pred             eeeeeeecccceeEEccCCCChhhC-EEEEEEEEEC-CCEEEE
Confidence            4566664   367899999999996 9999999999 555443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.11  E-value=0.0012  Score=37.88  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=26.6

Q ss_pred             CCeEEE-eecccEEEeecCC----CCCCcceeEEeecccc
Q psy10521          8 GGKYVV-LSSGDLYVFNATP----NDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~i-lpsGeL~I~nv~~----~D~~~~Y~C~~~~~lT   42 (66)
                      +.++.+ .++|.|.|.+++.    +| .+.|.|.+.|.+-
T Consensus        29 ~~~~~~~~~~g~L~i~~~~~~~~~~d-~G~Y~C~A~N~~G   67 (77)
T cd05733          29 DPRVTMKPDSGTLVIDNMNGGRAEDY-EGEYQCYASNELG   67 (77)
T ss_pred             CCCEEEeCCCCEEEEeccCCCCCcCC-CEEEEEEEEcCCC
Confidence            345655 3589999999965    56 4999999999984

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.10  E-value=0.00043  Score=38.57  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|.|.+++.+|. +.|.|.+.|.+-
T Consensus        42 ~~~L~I~~~~~~D~-G~Y~C~a~N~~G   67 (75)
T cd05750          42 NSELQINKAKLADS-GEYTCVVENILG   67 (75)
T ss_pred             eEEEEEccCCcccC-eEEEEEEEEcCC
Confidence            57899999999996 999999999973

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.09  E-value=0.0011  Score=40.91  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+|-....    ++.|.|+||+.+|+ |.|+|.+.+.=.|.
T Consensus        50 ~~Rv~f~~~~~~daSi~i~nl~~~D~-G~Y~C~v~t~P~g~   89 (99)
T cd05886          50 RERVTFKNPSFEDGTISLSRLELEDE-GVYICEFATFPTGN   89 (99)
T ss_pred             cCcEEEcCCCCCcceEEEcCCccccC-EEEEEEEEeCCCCC
Confidence            35665542    48999999999996 99999999977774

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.07  E-value=0.00024  Score=41.76  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=22.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeecccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|.|++|+.+|+ |.|.|.+.|.+=
T Consensus        55 ~~L~I~~v~~~D~-G~Y~C~A~N~~G   79 (90)
T cd05858          55 EVLYLRNVTFEDA-GEYTCLAGNSIG   79 (90)
T ss_pred             eEEEEccCCHHHC-EEEEEEEEeCCC
Confidence            4699999999996 999999999874

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.07  E-value=0.0012  Score=37.95  Aligned_cols=45  Identities=29%  Similarity=0.517  Sum_probs=31.0

Q ss_pred             CCeEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..+..++++|.+.+..+     +.+|. +.|.|.+.|.+ |... |. .+.|.|
T Consensus        50 ~~~~~~~~~~~~~~~~i~~~~~~~~D~-G~Y~C~a~N~~-G~~~-s~-~~~l~v   99 (100)
T cd07693          50 RSHRIVLPSGSLFFLRVVHGRKGRSDE-GVYVCVAHNSL-GEAV-SR-NASLEV   99 (100)
T ss_pred             CcceEEecCCcEEEEEeeccCCCcCcC-EEEEEEEEccc-ccee-cc-eEEEEe
Confidence            34567788999877665     67785 99999999997 3322 32 445544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.06  E-value=0.00064  Score=40.26  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             CeEEEee------cccEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +|..+..      ...|.|.||+.+|+ |.|+|++.+.
T Consensus        51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~   87 (100)
T cd05713          51 GRTELLKDAIAEGSVALRIHNVRASDE-GLYTCFFQSD   87 (100)
T ss_pred             ceEEeecccccCCcEEEEEEcCChhhC-EEEEEEEecC
Confidence            6776642      24699999999996 9999999874

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.06  E-value=0.0012  Score=40.76  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      ++.|.|+||+.+|. |.|+|.+...=.|..+.+.
T Consensus        59 d~sl~i~nv~~~D~-G~Y~C~v~tfP~G~~~~~~   91 (96)
T cd05887          59 DATIMLENVGFSDI-GVYICKAVTFPLGNTQSST   91 (96)
T ss_pred             ccEEEEeCCCcccc-EEEEEEEEeCCCCCeeEEE
Confidence            78999999999996 9999999999999887764

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.05  E-value=0.0011  Score=40.07  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEE
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v   56 (66)
                      .+||.+.-    +-.|.|.+++.+|. +.|.|++.+.-. .+..... +.+|.|
T Consensus        59 ~~r~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~Ca~~~~~~~~~~~fg~-gT~L~V  110 (110)
T cd05899          59 KDRFSASRPSLTRSSLTIKSAEPEDS-AVYLCASSLGGGADEAYFGP-GTRLTV  110 (110)
T ss_pred             CCceEEECcCCCccEEEECCCChhhC-EEEEEEeeCCCCccceEECC-CEEEeC
Confidence            46887753    23699999999996 999999987542 2344443 666654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.03  E-value=0.002  Score=39.93  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .|||.++  +   +-.|.|.|++.+|. +.|.|++...
T Consensus        66 ~gR~~~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~  102 (119)
T cd05712          66 RGRFRLLGDLGKKNCSLLISDAQPEDS-GKYFFRVELG  102 (119)
T ss_pred             cccEEEecCCCCCEEEEEEccCChhhC-eEEEEEEEcC
Confidence            3688773  2   23599999999996 9999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.99  E-value=0.0012  Score=38.76  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +|+-+-...+.|.|.++ .+|. |.|+|++.|.
T Consensus        38 ng~~l~~~~~~l~i~~~-~~ds-G~Y~C~a~~~   68 (78)
T cd05752          38 NGKLLETTTNSYRIRAA-NNDS-GEYRCQTQGS   68 (78)
T ss_pred             CCEEeeccCCeEEEeec-ccCC-EEeEEECCCC
Confidence            34433345788999999 8886 9999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=96.96  E-value=0.0026  Score=39.21  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ++-|.|.+|+.+|+ |.|+|.+.+..-|..
T Consensus        54 ~~~L~I~~v~~~D~-G~YtC~~~~~~~g~~   82 (95)
T cd05897          54 STYLHIIDVSLNDS-GYYTCKLQFTHEGKK   82 (95)
T ss_pred             CCEEEEEEcChhhC-EEEEEEEEEeeCCEE
Confidence            46899999999996 999999999876654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=96.95  E-value=0.00063  Score=40.56  Aligned_cols=26  Identities=23%  Similarity=0.146  Sum_probs=23.5

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .|.|.|.++..+|+ |.|+|.|.|.+=
T Consensus        43 ~~~L~i~~~~~~D~-G~YtC~A~N~~G   68 (79)
T cd05855          43 HGCLQLDNPTHLNN-GIYTLVAKNEYG   68 (79)
T ss_pred             EEEEEECCCCcccC-EEEEEEEEcCCc
Confidence            57899999999996 999999999864

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.91  E-value=0.0015  Score=40.39  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=26.5

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .||+.+..      +..|.|+|++.+|+ +.|+|++.+..
T Consensus        57 ~gR~~~~~~~~~~~~asL~I~~l~~sD~-G~Y~C~v~~~~   95 (110)
T cd05878          57 QGRVSLPNYPENRGDASLEISRLRSSDS-GVYRCEVMHGI   95 (110)
T ss_pred             cCeEEeccCCCCCCcEEEEECCCChhhC-EEEEEEEEeCC
Confidence            46877732      35599999999996 99999999864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.90  E-value=0.0022  Score=38.66  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=24.9

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ..|.|.|.+++.+|. |.|.|.+.|.. |..+
T Consensus        58 ~~~~L~I~~~~~~Ds-G~Y~C~~~N~~-g~~~   87 (94)
T cd05756          58 QKDLLWFLPAALEDS-GLYTCVVRNST-YCMK   87 (94)
T ss_pred             cCCeEEEccCCcccC-eEEEEEEcCCC-ccEE
Confidence            368899999999997 99999999964 4433

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=96.86  E-value=0.0015  Score=39.15  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|+.+..    +..|.|.|++.+|. +.|+|.+.+.
T Consensus        55 ~~R~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~   90 (106)
T cd05877          55 QGRVFLRRAHDLDASLVITDLRLEDY-GRYRCEVIDG   90 (106)
T ss_pred             cCcEEecCCCCCcEEEEEccCChHHC-EEEEEEEEec
Confidence            46777753    34799999999996 9999999874

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=96.86  E-value=0.0012  Score=39.69  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=22.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +..|.|.||+.+|. |.|+|.+.+.
T Consensus        67 ~~sL~I~~v~~sD~-G~Y~C~v~~~   90 (106)
T cd05714          67 DASLVITDLRLEDS-GRYRCEVIDG   90 (106)
T ss_pred             cceEEECCCCHHHC-EEEEEEEEcC
Confidence            67899999999996 9999999975

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=96.84  E-value=0.00067  Score=38.02  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.5

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.|.|.+++.+|. +.|.|++.|..
T Consensus        47 ~~~L~i~~v~~~D~-G~Y~C~a~N~~   71 (82)
T cd05856          47 KWTLSLKNLKPEDS-GKYTCHVSNRA   71 (82)
T ss_pred             eEEEEEccCChhhC-EEEEEEEEcCC
Confidence            46799999999995 99999999986

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.84  E-value=0.0019  Score=40.23  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEe
Q psy10521          8 GGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.  ++.   .|.|.+++.+|. +.|.|.+....   +++..... +.+|.|.
T Consensus        62 ~~rf~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~-GT~L~V~  117 (117)
T cd04981          62 KGRFTITRDTSKSTVYLQLNSLTPEDT-AVYYCARGLGGYGYGYFDYWGQ-GTLVTVS  117 (117)
T ss_pred             CCcEEEEEEccCCEEEEEECCCCHHHC-EEEEEEEEcCCCCCccEeeECC-CEEEEEC
Confidence            4688885  222   599999999996 99999998643   45666666 7888874

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.82  E-value=0.0013  Score=39.86  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeec
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      ..++|+.+...| |.|++++.+|+ |.|.|.+.-
T Consensus        37 ~~~~r~~~~~~G-LlI~~~~~~ds-G~Y~C~s~E   68 (85)
T cd05872          37 NAQFSYRVGTDG-LLILVTSPEHS-GTYRCYSEE   68 (85)
T ss_pred             CCCcceEEeCCC-CEEEECCHhhC-EEEEEEEec
Confidence            345788888888 77999999996 999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=96.79  E-value=0.003  Score=36.52  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             CCeEEEee-cccEEEeecCCCC---CCcceeEEeeccc
Q psy10521          8 GGKYVVLS-SGDLYVFNATPND---GYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D---~~~~Y~C~~~~~l   41 (66)
                      +.++.+.+ +|.|.|..++.++   ..+.|.|.|.|.+
T Consensus        29 ~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~   66 (77)
T cd05874          29 DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNER   66 (77)
T ss_pred             CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCC
Confidence            34566654 7999999998653   2599999999964

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.79  E-value=0.001  Score=41.38  Aligned_cols=26  Identities=19%  Similarity=0.560  Sum_probs=22.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +..|.|.+|+.+|+ +.|+|.+.|.-.
T Consensus        78 ~~sL~I~~v~~~D~-G~Y~C~v~~~~~  103 (115)
T cd05880          78 DASILIWQLQPTDN-GTYTCQVKNPPD  103 (115)
T ss_pred             ceEEEEeeCChhhC-EEEEEEEEeCCC
Confidence            45599999999996 999999997644

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=96.76  E-value=0.00075  Score=38.97  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..|.|.|.+|+.+|. +.|.|.+.|..
T Consensus        50 ~~~~L~I~~v~~~Ds-G~Y~C~a~n~~   75 (85)
T cd05754          50 FNGILTIRNVQLSDA-GTYVCTGSNML   75 (85)
T ss_pred             cCCEEEECCCCHHHC-EEEEEEEeccC
Confidence            478999999999996 99999999876

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=96.76  E-value=0.0011  Score=41.99  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ++.|.|+||+.+|. |.|.|.++|+-..
T Consensus        79 daSI~I~nv~~sD~-G~Y~C~v~n~p~~  105 (116)
T cd05879          79 DGSIVIHNLDYTDN-GTFTCDVKNPPDI  105 (116)
T ss_pred             eeEEEEccCCcccC-EEEEEEEEcCCCc
Confidence            45699999999996 9999999988654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.76  E-value=0.0034  Score=38.67  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             cCCeEEEee-ccc---EEEeecCCCCCCcceeEEeec
Q psy10521          7 VGGKYVVLS-SGD---LYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         7 ~~~ry~ilp-sGe---L~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+.||.+.. +|+   |.|.+|+.+|+ |.|.|++..
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~-G~Y~Cqv~t   83 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDE-GRYFCQLYT   83 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccC-EEEEEEEEc
Confidence            467888765 454   89999999996 999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=96.76  E-value=0.0012  Score=37.67  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.|.|.+++.+|+ +.|.|.+.|.+
T Consensus        50 ~~~l~i~~~~~~D~-G~Y~C~a~N~~   74 (85)
T cd05857          50 HWSLIMESVVPSDK-GNYTCVVENEY   74 (85)
T ss_pred             ceEEEEccCCcccC-EEEEEEEEeCC
Confidence            56799999999996 99999999986

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>smart00410 IG_like Immunoglobulin like

Probab=96.74  E-value=0.005  Score=33.00  Aligned_cols=35  Identities=31%  Similarity=0.580  Sum_probs=27.7

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+++.+...   ..|.|.+++.+|+ +.|.|.+.+....
T Consensus        39 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~~~~~   76 (86)
T smart00410       39 SGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATNSSGS   76 (86)
T ss_pred             CCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEcCCCe
Confidence            456666655   6899999999997 9999999965443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=96.74  E-value=0.005  Score=33.00  Aligned_cols=35  Identities=31%  Similarity=0.580  Sum_probs=27.7

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+++.+...   ..|.|.+++.+|+ +.|.|.+.+....
T Consensus        39 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~~~~~   76 (86)
T smart00409       39 SGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATNSSGS   76 (86)
T ss_pred             CCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEcCCCe
Confidence            456666655   6899999999997 9999999965443

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=96.73  E-value=0.0024  Score=39.22  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=27.4

Q ss_pred             ccEEEeecC-CCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         17 GDLYVFNAT-PNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~-~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.|.|.+|. .+| .+.|.|.+.|.+ |+.  +. ...|.+.++
T Consensus        69 s~L~I~~v~~~~D-~G~Y~C~A~N~~-G~~--~~-~i~L~~~~~  107 (109)
T cd05773          69 SILTIINVSAALD-YALFTCTAHNSL-GED--SL-DIQLVSTSR  107 (109)
T ss_pred             eEEEECcCCccCC-CEEEEEEEEeCC-ccC--cE-EEEEEecCC
Confidence            579999998 477 589999999998 332  22 346666653

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.71  E-value=0.0016  Score=35.27  Aligned_cols=18  Identities=39%  Similarity=0.739  Sum_probs=17.0

Q ss_pred             EEEeecCCCCCCcceeEEe
Q psy10521         19 LYVFNATPNDGYKSYRCRT   37 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~   37 (66)
                      |.|.+|+++|+ +.|.|.+
T Consensus        47 L~i~~v~~~d~-G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDS-GTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGT-EEEEEEE
T ss_pred             EEEccCCHHHC-EEEEEEC
Confidence            99999999996 9999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.69  E-value=0.0013  Score=38.46  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ..+.|.|.+|..+| .+.|.|.+.|.+-
T Consensus        54 ~~~~L~I~~v~~~D-~g~Y~C~A~N~~G   80 (90)
T cd04972          54 DIYNLQLSNITSET-QTTVTCTAENPVG   80 (90)
T ss_pred             CEEEEEEecCCccc-CEEEEEEEECCCC
Confidence            45789999999999 6999999999873

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=96.68  E-value=0.0026  Score=38.89  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..|.|.+++.+|. |.|.|.+.|.. |+
T Consensus        65 s~L~I~~v~~~D~-G~Ytc~A~N~~-g~   90 (101)
T cd05859          65 SKLKLIRAKEEDS-GLYTALAQNED-AV   90 (101)
T ss_pred             cEEEEeeCCHHHC-EEEEEEEEcCC-ce
Confidence            5799999999996 99999999985 44

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.66  E-value=0.0017  Score=40.84  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             cEEEeecCCCCCCcceeEEeecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .|.|.||+.+|+ |.|.|++.+.
T Consensus         2 sL~i~~v~~~D~-G~Y~C~~~~~   23 (139)
T cd05771           2 SLTLPGLTVHDE-GTYICSVSTP   23 (139)
T ss_pred             eEEECCCCHHHC-EEEEEEEEcc
Confidence            489999999996 9999999875

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=96.66  E-value=0.0034  Score=39.50  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=28.6

Q ss_pred             CeEEEee------cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          9 GKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         9 ~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +|+.+..      +..|.|.|++.+|. +.|+|.+.+-+-.+
T Consensus        60 ~R~sl~~~~~~~~~asL~I~nl~~sDs-G~Y~C~V~~g~~~~  100 (112)
T cd05900          60 DRVSLPNYPAIPSDATLEITELRSNDS-GTYRCEVMHGIEDN  100 (112)
T ss_pred             CeEEecccCCCCCCcEEEEeecccccC-EEEEEEEecCCCCc
Confidence            4777742      77899999999996 99999999875544

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG3513|consensus

Probab=96.65  E-value=0.0038  Score=52.25  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             ccCccCC--eEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          3 SDDFVGG--KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         3 ps~~~~~--ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      |.+..+.  |+.+..+|+|||.||..+|. +.|.|-+.++.|..-+... +..|++.
T Consensus       177 ~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~-~~Y~C~a~~~~~~~~v~~~-~~~L~~~  231 (1051)
T KOG3513|consen  177 PHFVQIDNRRVFSQENGNLYFSNVETSDF-GNYICSATFPSTQTIVQGP-PFPLIVR  231 (1051)
T ss_pred             CcccccCcceeEecccceEEEeecchhhc-CceEEEEEchhhcccccCC-ceeEEEc
Confidence            4444444  88888999999999999997 9999999999998888877 7778773

>smart00406 IGv Immunoglobulin V-Type

Probab=96.56  E-value=0.0013  Score=36.45  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=24.0

Q ss_pred             cCCeEEEeec-----ccEEEeecCCCCCCcceeEEe
Q psy10521          7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRT   37 (66)
Q Consensus         7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~   37 (66)
                      ..+|+.+...     ..|.|.|++.+|. +.|.|++
T Consensus        47 ~~~R~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~v   81 (81)
T smart00406       47 YKGRVTISKDTSKNDVSLTISNLRVEDT-GTYYCAV   81 (81)
T ss_pred             cCCcEEEEecCcCCEEEEEEcCCCHHHC-EEEEEcC
Confidence            3578877644     4589999999996 9999974

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=96.56  E-value=0.004  Score=38.55  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             CCeEEEee-------cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS-------SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp-------sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+||.|..       .=+|.|.|+..+|-.+.|.|.+.|.+=.
T Consensus        48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~   90 (98)
T cd05898          48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS   90 (98)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence            57998854       3379999999888668999999998743

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.54  E-value=0.0015  Score=38.39  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +++|.|.+++.+|. |.|+|++.+..
T Consensus        47 ~~~l~I~~~~~~ds-G~Y~C~~~~~~   71 (83)
T cd05753          47 NSNLSIPQATLSDS-GSYHCSGIIGS   71 (83)
T ss_pred             CceEEECccCHHHC-EEEEEEEEeCC
Confidence            57899999999996 99999999875

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.53  E-value=0.0054  Score=37.21  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEE
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v   56 (66)
                      .+||.+..+     -.|.|.+++.+|. +.|.|++...-.  .+..... +.+|.|
T Consensus        63 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-gt~l~V  116 (116)
T cd04982          63 KNKFEARKDVGKSTSTLTIQNLEKEDS-ATYYCAYWESGSSYYIKVFGS-GTKLIV  116 (116)
T ss_pred             CCCEEEEEECCCCEEEEEEEECCHHHC-EEEEEEEecCCCCccceEECC-CEEEeC
Confidence            578887633     3699999999996 999999975311  2333333 555554

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=96.53  E-value=0.0056  Score=42.62  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             CCeEEEeec-ccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521          8 GGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         8 ~~ry~ilps-GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ++++.+..+ +.|.|.||+.+|+ |.|.|.+....-|...
T Consensus       178 ~~r~~~~~~~~~L~I~~V~~~Ds-G~YtC~a~~~~~g~~y  216 (227)
T PHA02826        178 TDRIQLRNNNSTLVIKSATHDDS-GIYTCNLRFNKNSNNY  216 (227)
T ss_pred             CCCEEEeCCCCEEEECcCCHHhC-EEEEEEEEEeECCEEE
Confidence            446666554 4799999999996 9999999987655443

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.40  E-value=0.0028  Score=38.89  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ..|.|.||+.+|+ +.|.|++.|.
T Consensus        80 ~sL~I~~v~~~D~-G~Y~C~v~~~  102 (116)
T cd05715          80 ASIVIHNLQFTDN-GTYTCDVKNP  102 (116)
T ss_pred             eEEEEeeCCcccC-EEEEEEEEeC
Confidence            4599999999996 9999999976

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.39  E-value=0.0072  Score=36.83  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeecccc-----CcEEecccceeEEEe
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKIT-----GESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~lT-----ge~~~S~~~~~l~v~   57 (66)
                      .+||.+.  .+   -.|.|.+++.+|. +.|.|++.....     .+..... +.+|.|.
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~fg~-gt~l~v~  115 (116)
T cd07706          58 KGRYSVNFQKAQKSISLTISALQLEDS-AKYFCALSTLGMGSYDTDKLIFGK-GTRVTVE  115 (116)
T ss_pred             CCeEEEEEeccCCEEEEEECCCCHHHC-EEEEEEEECCCCCcccccCCEECC-CeEEEEc
Confidence            4789885  22   2599999999996 999999996543     3344454 7788775

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=96.36  E-value=0.0077  Score=35.72  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             CCeEEEe-ecc---cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~il-psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +++|.+. .+|   .|.|.+++.+|. +.|.|.+.|.+-.+
T Consensus        45 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G~~   84 (92)
T cd05891          45 SEHYSVKLEQGKYASLTIKGVTSEDS-GKYSINVKNKYGGE   84 (92)
T ss_pred             CCCEEEEEcCCCEEEEEECCCChhhC-EEEEEEEEeCCCce
Confidence            3455543 333   699999999996 99999999975443

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=96.35  E-value=0.0043  Score=43.20  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..+.|.|.+|+.+|+ |.|.|++.|..
T Consensus        96 r~~~L~I~~v~~~Ds-G~Y~C~a~N~~  121 (227)
T PHA02826         96 RSENLWIGNVINIDE-GIYICTISSGN  121 (227)
T ss_pred             CCCeEEECCCChHHC-EEEEEEEEECC
Confidence            367999999999996 99999999955

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.32  E-value=0.0054  Score=36.54  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +..|.|+||+.+|. +.|+|.+...-.|.
T Consensus        60 ~~sL~I~nv~~~D~-G~Y~C~~~~~p~g~   87 (97)
T cd05846          60 STSITIWNVTLEDE-GCYKCIFNTFPDGS   87 (97)
T ss_pred             ccEEEEeCCceeee-EEEEEEEEeCCCCC
Confidence            55699999999996 99999998766665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=96.31  E-value=0.0019  Score=39.59  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.9

Q ss_pred             EEEeecCCCCCCcceeEEeecc
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      |.|.|++.+|. ++|.|.+-|+
T Consensus        67 L~I~~l~~sDs-gtY~C~v~~~   87 (94)
T cd07690          67 LIIKNLKIEDS-DTYICEVEDK   87 (94)
T ss_pred             EEECCCCHHHC-EEEEEEECCc
Confidence            99999999996 9999999887

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.16  E-value=0.007  Score=37.25  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS   48 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S   48 (66)
                      ++.|.|+||+.+|. |.|+|.+...=+|.....
T Consensus        59 d~sI~i~nvt~~D~-G~Y~C~~~t~P~g~~~~~   90 (96)
T cd05889          59 DMSLSFNNATEEDV-GLYCCSLVTYPQGSWEKV   90 (96)
T ss_pred             ccEEEEcCCCcccC-EEEEEEEEeCCCCCeEEE
Confidence            68999999999996 999999998878776543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.08  E-value=0.0059  Score=32.84  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             EEEeecccEEEeecCCCCCCcceeEEeec
Q psy10521         11 YVVLSSGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus        11 y~ilpsGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      ..-..++.|.|.+|..+|. +.|.|++.|
T Consensus        48 ~~~~~~~~L~i~~v~~~~~-g~y~C~a~N   75 (75)
T PF13927_consen   48 GSSSSNSTLTISNVTRSDN-GTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEEEESSCCGGGT-EEEEEEEEE
T ss_pred             eccceeeEEEEccCCHHhC-cEEEEEEEC
Confidence            3344588999999999995 889999976

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.06  E-value=0.0066  Score=33.92  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..|.|.+++.+|. +.|.|.+.|.+
T Consensus        51 ~~l~i~~~~~~d~-g~Y~C~~~n~~   74 (85)
T cd05729          51 WTLILESVVPSDS-GKYTCIVENKY   74 (85)
T ss_pred             EEEEEeECCcccC-EEEEEEEEECC
Confidence            4699999999995 99999999876

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>KOG4222|consensus

Probab=96.05  E-value=0.01  Score=50.50  Aligned_cols=48  Identities=29%  Similarity=0.478  Sum_probs=38.8

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++.+...|.|.|.||..+|+ |+|.|.+.|. -||. .|. +++|.|.|.-
T Consensus       179 ~~~~lisgG~LlIsnvrksD~-GtY~CVatNm-vG~R-eS~-~A~lsv~e~P  226 (1281)
T KOG4222|consen  179 PIIALISGGNLLISNVRKSDE-GTYACVATNM-VGER-ESI-PARLSVQEKP  226 (1281)
T ss_pred             eeEEEecCCcEEEeccccCCC-ceeeeeeccc-cccc-ccc-cceeeeccCC
Confidence            456667899999999999996 9999999885 4553 354 8899998753

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.97  E-value=0.011  Score=35.79  Aligned_cols=45  Identities=29%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             CCeEEE--eecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVV--LSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~i--lpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+  .+++   .|.|.+++.+|. +.|.|...+.  ......+ +.+|.|
T Consensus        58 ~~rf~~~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~~--~~~~Fg~-gT~L~V  107 (107)
T cd07700          58 QEKFSIRVTSDSSRYRLHINRVKPEDS-GTYFCMTVGS--PELTFGT-GTQLSV  107 (107)
T ss_pred             cCcEEEEEECCCCEEEEEECCCCHHHC-EEEEEeEcCC--CCCEECc-CEEEeC
Confidence            357765  3333   399999999996 9999998743  3344454 666654

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=95.88  E-value=0.01  Score=37.23  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=26.9

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .||..+..      +..|.|.||+.+|. +.|+|.+.+-.
T Consensus        57 ~gRvsl~~~~~~~~~asL~i~nv~~~D~-G~Y~C~v~~g~   95 (110)
T cd05902          57 QGRVSLPGYPKNRYNASLVLSRLRYSDS-GTYRCEVVLGI   95 (110)
T ss_pred             ccEEEeecCCCCCceEEEEECCCCHHHC-EEEEEEEEECC
Confidence            46777743      55899999999996 99999999843

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=95.83  E-value=0.011  Score=34.77  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=26.9

Q ss_pred             cCCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..+|+.+..+     -.|.|.+|+.+|. +.|.|++....
T Consensus        49 ~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~   87 (98)
T cd05716          49 YEGRVSLTDDPDNGVFTVTLNQLRKEDA-GWYWCGVGDDG   87 (98)
T ss_pred             cCCCEEEEecCCCCEEEEEEcCCCHHHC-EEEEEEcccCC
Confidence            3578887532     2599999999996 99999998764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PHA02785 IL-beta-binding protein; Provisional

Probab=95.66  E-value=0.012  Score=42.48  Aligned_cols=25  Identities=12%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +|.|.|.+|+.+|. +.|.|.|.|..
T Consensus       291 ~~~L~I~~V~~~D~-G~Y~C~A~n~~  315 (326)
T PHA02785        291 TSRLNINPVKEEDA-TTFTCMAFTIP  315 (326)
T ss_pred             eEEEEECCcchhcC-eeeEEEEEecc
Confidence            57899999999996 99999999976

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=95.65  E-value=0.013  Score=37.63  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .||-.+..      +..|.|.||+.+|. |.|+|.+.+....+
T Consensus        64 ~gRv~l~~~~~~~g~asL~i~~v~~sD~-G~Y~C~V~~g~~~~  105 (117)
T cd05901          64 MGRVSVPSHPEDQGDASLTIVKLRASDA-GVYRCEVMHGIEDT  105 (117)
T ss_pred             cCcEEeeccCCcCCceEEEEcccccccC-EEEEEEEEECCccc
Confidence            45666642      57899999999996 99999999876433

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=95.52  E-value=0.028  Score=30.68  Aligned_cols=24  Identities=33%  Similarity=0.702  Sum_probs=20.3

Q ss_pred             cEEEeecCCCCCCcceeEEeecccc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .|+|.+++.+|. +.|.|++.+.-.
T Consensus        46 ~~~~~~~~~~~~-g~y~C~~~~~~~   69 (80)
T PF13895_consen   46 GLFIPNVSPEDS-GNYTCRASNGSG   69 (80)
T ss_dssp             EEEESSEEGGGT-EEEEEEEEETTE
T ss_pred             eeeeeeeccccC-EEEEEEEEeCCC
Confidence            399999999985 999999988543

...

>PHA03376 BARF1; Provisional

Probab=95.27  E-value=0.057  Score=38.48  Aligned_cols=50  Identities=20%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEeccc----ceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF----QTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~----~~~l~v~e   58 (66)
                      .|++.|..   +=.|.|.|++.+|. |+|+|.+...-+|-.++.-.    +-.|.|..
T Consensus        75 RGrtD~~~~~gnvsLvI~~l~lSDd-GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a  131 (221)
T PHA03376         75 RGFFDIHRSANTFFLVVTAANISHD-GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS  131 (221)
T ss_pred             ccEEEEEecCCeEEEEEEeeeecCC-ceEEEEEEcCCCceeeeeeeeeeecceEEEEe
Confidence            46677743   33589999999995 99999999988888887531    22366654

>KOG4221|consensus

Probab=94.98  E-value=0.055  Score=46.52  Aligned_cols=48  Identities=25%  Similarity=0.437  Sum_probs=37.1

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      -|+.++-.++|+|.|++.+|. +.|.|++.|  |.+....  .+.|.|..|-+
T Consensus       283 ~rivl~g~~slliS~a~~~dS-g~YtC~Atn--~~D~ida--saev~V~a~P~  330 (1381)
T KOG4221|consen  283 YRIVLVGGSSLLISNATDDDS-GKYTCRATN--TNDSIDA--SAEVTVLAPPG  330 (1381)
T ss_pred             eEEEEecccceEEeccccccC-ceEEEEecC--CCccccc--ceEEEEEcCCC
Confidence            477777899999999999995 999999999  5554433  45666665543

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=94.90  E-value=0.038  Score=31.27  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=19.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.|.|.|++  | .+.|.|.+.|.+
T Consensus        37 ~~~L~i~~~~--d-~G~Y~C~A~N~~   59 (69)
T cd05739          37 RNVLELTNIY--E-SANYTCVAISSL   59 (69)
T ss_pred             ccEEEEeccc--c-CeeEEEEEEeCC
Confidence            4579999986  4 379999999987

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>KOG4194|consensus

Probab=94.86  E-value=0.056  Score=44.27  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec-cccccc
Q psy10521          8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG-FRAVYS   64 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e-p~~~~~   64 (66)
                      +.|-+++| .-..+|.||..||. |-|.|.+.|. .|+.+.+   |.|+|-| |.-+.|
T Consensus       659 eRRl~Vmpedd~f~Itnvk~eD~-GiYtC~A~n~-AG~isan---AtL~V~e~p~f~~P  712 (873)
T KOG4194|consen  659 ERRLHVMPEDDVFFITNVKIEDQ-GIYTCTAQNV-AGQISAN---ATLTVLETPSFSIP  712 (873)
T ss_pred             hheeeecCCCCEEEEeccccccc-ceeEEeeecc-ccceeec---eEEEEecCCccccc
Confidence            34777888 66789999999995 9999999986 6776655   3777776 566655

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.82  E-value=0.026  Score=34.22  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+||.+..   .-.|.|.+++.+|. +.|.|++..
T Consensus        57 ~~rf~~~~~~~~~~L~I~~~~~sDs-gtY~Ca~~~   90 (104)
T cd05720          57 SKRFSGSRSSNSFVLTLKNFQKENE-GYYFCSVAS   90 (104)
T ss_pred             CceEEEEecCCEEEEEECCCCHHHC-EEEEEEEcc
Confidence            46788744   33599999999996 999999863

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02633 hypothetical protein; Provisional

Probab=94.68  E-value=0.036  Score=32.73  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      -...|.|.++..+|. |.|.|+++|.
T Consensus        16 ~~~nLwilpa~~sDS-GiYiC~~rn~   40 (63)
T PHA02633         16 NCNNMLILNPTQSDS-GIYMCITKNE   40 (63)
T ss_pred             ccccEEEeccccccC-cEEEEEEcCC
Confidence            578899999999996 9999999975

>cd00096 Ig Immunoglobulin domain

Probab=94.47  E-value=0.038  Score=27.53  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=23.8

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ......|.|.+++.+|. +.|.|.+.+..
T Consensus        39 ~~~~~~l~i~~~~~~d~-g~y~C~~~~~~   66 (74)
T cd00096          39 SSGSSTLTISNVTLEDS-GTYTCVASNSA   66 (74)
T ss_pred             ceeEEEEEECccCcccC-cEEEEEEecCc
Confidence            44577799999999996 99999999876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.05  E-value=0.08  Score=38.80  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++.-|.++|+|.+.|.+.++. |.|.|...++.
T Consensus        29 ~~~nIT~TG~L~~~~F~esmS-G~YTCtLsYk~   60 (271)
T PF07354_consen   29 SYVNITETGKLMFKNFQESMS-GSYTCTLSYKP   60 (271)
T ss_pred             CeEEEccCceEEeeccccccC-CceEEEEEEEe
Confidence            356778999999999999996 99999999998

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=93.55  E-value=0.091  Score=31.42  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ..++.|.+++.+|+ |.|+|+....
T Consensus        54 ~a~f~I~~~~~~~~-G~Y~C~~~~~   77 (94)
T cd05711          54 QASFPLGPVTPAHA-GTYRCYGSYN   77 (94)
T ss_pred             EEEEEecCCCcccC-EEEEEEEECC
Confidence            33689999999997 9999998644

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=93.53  E-value=0.1  Score=33.17  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=24.0

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .-...|.|..+..||. |.|.|+++|.-
T Consensus        67 ~~~~~Lwf~Pa~~eDS-G~Y~C~~rN~t   93 (104)
T cd05896          67 KEEDSIWFRPAELQDS-GLYTCVLRNST   93 (104)
T ss_pred             EeCCEEEEEeCChhhC-eEEEEEECCCC
Confidence            4578899999999996 99999999873

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd00098 IgC Immunoglobulin Constant domain

Probab=92.26  E-value=0.15  Score=29.29  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=21.4

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+|.|.+  ..-|.|....++| .+.|.|++.|.--.
T Consensus        54 ~~gt~~~--~s~l~v~~~~~~~-~~~y~C~v~h~~~~   87 (95)
T cd00098          54 SDGTYSV--SSQLTVSPSDWNS-GDTYTCVVTHESLP   87 (95)
T ss_pred             CCCCEEE--EEEEEECHHHhCC-CCCEEEEEEeCCCC
Confidence            3445554  3335555555556 59999999998554

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=91.90  E-value=0.17  Score=28.85  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=19.1

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .|.|....++| .+.|+|++.|+.-.+
T Consensus        47 ~L~i~~~~~~~-~~~y~C~a~n~~l~~   72 (82)
T cd05759          47 TLPITPSDHDT-GRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEeCceecC-CCEEEEEEcCccCCC
Confidence            46677666666 489999999986433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=91.16  E-value=0.24  Score=29.67  Aligned_cols=29  Identities=10%  Similarity=0.037  Sum_probs=22.6

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      -+|.|.|.=+..+| .+.|.|++.|+...+
T Consensus        41 ~~s~L~~~~~~~Dd-g~~~~C~A~n~a~~~   69 (80)
T cd05885          41 VSNTIRFPVDRKDD-GAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEEEEeeeccC-CcEEEEEEEChhhCC
Confidence            37889986666555 599999999997654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=89.85  E-value=0.32  Score=28.56  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=19.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|.|.++.  | .+.|.|.+.|.+=
T Consensus        48 ~s~L~i~~~~--d-~g~Y~C~A~N~~G   71 (81)
T cd05749          48 PSVLNVPGLN--E-TSKFSCEAHNAKG   71 (81)
T ss_pred             CCEEEEcccc--C-CeEEEEEEEeccC
Confidence            4679999985  4 3799999999854

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>KOG4222|consensus

Probab=86.22  E-value=0.52  Score=40.58  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             CccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      -...+|..+-+.|.|.|.||+.+|. +-|-|++.+-
T Consensus       364 ~~~~~r~svs~~g~L~it~v~~~d~-g~Yvcq~~~~  398 (1281)
T KOG4222|consen  364 PSSNGRGSVSPTGTLTITNVRQSDE-GYYVCQTQTS  398 (1281)
T ss_pred             CCcCccceecCCCCccccccccccc-ceEeeccccc
Confidence            3457899999999999999999995 9999997643

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=86.05  E-value=1.4  Score=30.81  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             CeEEEe----ecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          9 GKYVVL----SSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         9 ~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +|..++    -+-.|.|.||+.+|+ |-|+|.+.-.-.|
T Consensus        73 ~Rve~mS~s~~~StItIknVt~sDe-GcY~C~F~tfp~G  110 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLKDN-GCYTCIFNTLLSK  110 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChhhC-eEEEEEEEecCCC
Confidence            466642    267899999999996 9999999887777

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=85.83  E-value=1.6  Score=24.93  Aligned_cols=32  Identities=34%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +.+|.|.+...  |.|.   +++ ...|.|++.|.-..
T Consensus        48 ~~dgty~~~s~--l~v~---~~~-~~~ysC~V~H~~l~   79 (83)
T PF07654_consen   48 NSDGTYSVTSS--LTVT---WNS-GDEYSCRVTHESLP   79 (83)
T ss_dssp             ETTSEEEEEEE--EEEE---TTT-TGGEEEEEEETTSS
T ss_pred             ccccceeeeEE--EEec---CCC-CCEEEEEEEECCCC
Confidence            45778887544  4444   544 36999999997543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=85.51  E-value=1.2  Score=25.58  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=16.5

Q ss_pred             EEEeecCCCCCCcceeEEeeccccC
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      |.| ....+|....|+|++.|+--.
T Consensus        47 l~~-~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          47 LRF-QVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEE-EcchhhCCCEEEEEEeChhcC
Confidence            444 445555558999999998554

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG4194|consensus

Probab=84.90  E-value=0.75  Score=37.99  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      -.+.|+..||..+|+ +.|.|.+.|++-..  -|. -+||.|..
T Consensus       572 ~~~~L~L~nVt~td~-grYQCVvtN~FGSt--ysq-k~KltV~~  611 (873)
T KOG4194|consen  572 YTAILHLDNVTFTDE-GRYQCVVTNHFGST--YSQ-KAKLTVNQ  611 (873)
T ss_pred             hhheeeeeeeecccC-ceEEEEEecccCcc--hhh-eeEEEeec
Confidence            378999999999996 99999999986432  122 45676654

>smart00407 IGc1 Immunoglobulin C-Type

Probab=82.41  E-value=2.8  Score=23.69  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=13.8

Q ss_pred             EEEeecCCCCCCcceeEEeeccc
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      |.|.-..+.+ ...|.|++.|.-
T Consensus        50 L~v~~~~~~~-~~~~tC~V~H~~   71 (75)
T smart00407       50 LTVSASTWES-GDTYTCQVTHEG   71 (75)
T ss_pred             EEEccccCCC-CCEEEEEEEEcC
Confidence            3333334444 489999999873

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=80.54  E-value=1.7  Score=27.34  Aligned_cols=26  Identities=15%  Similarity=0.220  Sum_probs=22.6

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+|.+..+..+|+ |.|.|++.|..-.
T Consensus        65 S~L~L~Rlk~~E~-G~YTf~a~N~~~~   90 (101)
T cd05860          65 SELHLTRLKGTEG-GTYTFLVSNSDAS   90 (101)
T ss_pred             EEEEEeecChhhC-cEEEEEEECCCCe
Confidence            5799999999996 9999999998643

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-10
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-10
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-10
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		5e-10

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 9   GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 158 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 206

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 9   GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 191 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 9   GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 204

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 9   GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
           GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 162 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 8   GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
            GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 204

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.5 bits (123), Expect = 7e-10
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 3   SDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
                 GKY+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 8   GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
             ++V   +G+LY+     +D   +Y C   N +T           +   
Sbjct: 148 NRRFVSQETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRN 196

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 39.9 bits (93), Expect = 9e-06
 Identities = 10/41 (24%), Positives = 12/41 (29%)

Query: 10  KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 50
           +     +GDLY  N    D    Y C      T   Q    
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 37.5 bits (87), Expect = 6e-05
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 8   GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46
           G ++V  ++G+LY+     +D   +Y C   + I   ++
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHIDFITK 186

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 9   GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 50
           G+ ++  +  L + N   ND    Y    +       +A+  
Sbjct: 63  GREIIYPNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 34.4 bits (79), Expect = 9e-04
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   GKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 56
            ++ +L++ +L + N   +D G   YRC    +  GE         +++
Sbjct: 145 NRFAMLANNNLQILNINKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.79
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.48
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.39
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.37
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.27
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.27
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.27
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.22
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.22
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.2
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.14
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.05
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.03
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.02
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.01
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.01
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.0
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.0
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.0
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.0
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.99
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.99
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.99
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.98
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	97.97
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.97
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.96
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.94
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.93
3khq_A	133	B-cell antigen receptor complex-associated protei	97.93
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.92
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	97.92
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.92
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.91
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	97.9
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	97.9
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.9
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.89
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	97.88
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.88
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	97.87
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	97.86
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	97.86
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.86
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.86
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.86
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.84
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	97.84
2ens_A	96	Advanced glycosylation END product-specific recept	97.82
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.82
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	97.81
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.8
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.8
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.79
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.78
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.77
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.77
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	97.77
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	97.77
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	97.77
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	97.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.76
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.75
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.73
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.72
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.72
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	97.71
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.71
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.71
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.71
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	97.71
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.7
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.7
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	97.69
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.69
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	97.69
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.68
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	97.68
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	97.68
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.67
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	97.67
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.67
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	97.67
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	97.67
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.66
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.66
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.65
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	97.65
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	97.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.65
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	97.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.64
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.64
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.63
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.62
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.62
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.62
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.61
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	97.61
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	97.61
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.61
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.61
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.61
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.6
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.6
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.6
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	97.6
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.59
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	97.59
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.59
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.59
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.59
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.59
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	97.59
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.59
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	97.58
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.74
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.58
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.58
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.58
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	97.58
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	97.58
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.57
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	97.57
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.57
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.56
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.56
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.56
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.56
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.56
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.56
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	97.56
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.56
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.55
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.55
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	97.54
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.54
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.54
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.54
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	97.54
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.53
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.53
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.53
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.53
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.53
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.52
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	97.52
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.52
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	97.51
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.51
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.5
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.5
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.5
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	97.5
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.5
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.49
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.49
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	97.48
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.48
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.48
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.47
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.47
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.47
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	97.47
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.46
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.46
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	97.46
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.46
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.45
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.45
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.45
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.45
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.44
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	97.44
1c5d_H	215	Monoclonal antibody against the main immunogenic t	97.44
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	97.43
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.43
1xt5_A	135	Variable region-containing chitin-binding protein	97.43
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.43
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	97.43
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	97.43
3kg5_A	134	B-cell antigen receptor complex-associated protei	97.43
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	97.43
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	97.42
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	97.41
1p4b_L	135	Antibody variable light chain; FV antibody, antige	97.41
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.41
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.41
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.41
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.41
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.4
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.39
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	97.39
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.39
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	97.39
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.39
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	97.39
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	97.38
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.38
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.38
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	97.38
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	97.38
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.38
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.37
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.37
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.37
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.36
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	97.36
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.36
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.36
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.36
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	97.36
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.36
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	97.35
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	97.35
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.35
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	97.34
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	97.34
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.34
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.34
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	97.34
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	97.33
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.33
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.33
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	97.33
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.32
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.32
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.32
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.32
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.32
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	97.32
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	97.31
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.31
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.31
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.31
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.3
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.3
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.3
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.29
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.29
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	97.29
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	97.28
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.27
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.27
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.26
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	97.26
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	97.26
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.25
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	97.25
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	97.25
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.25
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.24
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.24
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	97.24
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	97.23
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.23
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	97.23
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.23
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.22
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	97.22
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	97.22
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.21
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	97.21
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.2
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.2
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.2
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.2
1dqt_A	117	CTLA4, cytotoxic T lymphocyte associated antigen 4	97.19
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.19
3b9v_A	120	Heavy chain variable domain; antibody engineering,	97.19
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.18
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.17
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.17
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	97.16
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	97.16
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	97.16
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.16
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.15
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	97.15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	97.15
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	97.15
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	97.14
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.13
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	97.12
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.12
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.12
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.12
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.12
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.11
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.11
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	97.11
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	97.1
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	97.09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	97.09
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	97.07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.07
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	97.07
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	97.07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.06
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	97.06
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	97.06
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	97.06
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	97.05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.05
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	97.04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	97.04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.03
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.02
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	97.01
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.01
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.01
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.01
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.0
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.0
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	96.99
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	96.99
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	96.98
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	96.97
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	96.96
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	96.96
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	96.95
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	96.95
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	96.95
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	96.94
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	96.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.92
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	96.92
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	96.92
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	96.92
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.92
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.91
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	96.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	96.89
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	96.89
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.89
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	96.88
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	96.86
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	96.86
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	96.86
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	96.86
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	96.85
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	96.83
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	96.83
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	96.83
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	96.83
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	96.82
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	96.81
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	96.81
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	96.8
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	96.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	96.8
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	96.79
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.79
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	96.79
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	96.79
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	96.78
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	96.78
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	96.77
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	96.76
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	96.75
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	96.75
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	96.74
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	96.74
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	96.73
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	96.73
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	96.73
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	96.72
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	96.71
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	96.7
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	96.7
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	96.7
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	96.7
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	96.7
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	96.7
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	96.7
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	96.69
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	96.69
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.68
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	96.67
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	96.66
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	96.66
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	96.65
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	96.63
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	96.62
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	96.61
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	96.61
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	96.6
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	96.6
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	96.58
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	96.58
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	96.57
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.57
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	96.56
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	96.56
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	96.54
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	96.54
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	96.53
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	95.54
1he7_A	126	High affinity nerve growth factor receptor; transf	96.52
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	96.52
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	96.51
2vyr_E	153	Human single domain antibody; zinc, complex, nucle	96.51
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	96.51
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	96.5
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	96.49
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	96.47
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.46
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	96.45
3k1k_C	123	Enhancer; nanobody, antibody-complex, chromophore,	96.45
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	96.44
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	96.44
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	96.43
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	96.43
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	96.41
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	96.41
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	96.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.39
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	96.37
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.37
3qyc_A	146	VH domain of IGG molecule; immunoglobulin V domain	96.35
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	96.35
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	96.33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	96.33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	96.33
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	96.32
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	96.32
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	96.32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	96.32
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	96.29
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	96.28
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	96.28
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	96.27
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	96.27
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	96.26
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	96.26
3k3q_A	151	Llama AA1 VHH domain; llama, VHH, antibody, BONT,	96.24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	96.23
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	96.23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	96.23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	96.23
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	96.21
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	96.21
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	96.2
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	96.19
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	96.19
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	96.19
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	96.18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	96.18
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	96.18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	96.17
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	96.14
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	96.12
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	96.11
3v0a_C	152	Llama antibody F12; botulinum neurotoxin, toxin, n	96.11
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	96.07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	96.05
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	96.04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	96.04
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	95.95
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	95.94
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	95.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	95.9
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	95.89
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	95.87
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	95.87
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	95.86
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	95.85
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	95.84
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	95.84
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	95.83
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	95.79
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	95.76
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	95.76
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	95.75
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	95.73
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	95.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	95.72
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	95.72
3r0m_A	143	Llama VHH A12; IG domain, immune system; 1.50A {La	95.71
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	95.68
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	95.65

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.79  E-value=9.5e-09  Score=76.04  Aligned_cols=56  Identities=46%  Similarity=0.742  Sum_probs=50.1

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      ..++||.++++|.|+|.||+.+|+.+.|+|++.|+.+++.+.+....+|.|.+|..
T Consensus       188 ~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~  243 (816)
T 3dmk_A          188 EYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS  243 (816)
T ss_dssp             CBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCS
T ss_pred             CCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCC
Confidence            35789999999999999999999779999999999999999988778899887643

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.48  E-value=2.1e-07  Score=56.56  Aligned_cols=48  Identities=13%  Similarity=0.201  Sum_probs=38.0

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .||..++++|.|.|.||+.+|. |.|.|++.+..-+ . .+. .+.|.|.++
T Consensus        63 ~gR~~~~~ngSL~I~nvt~~D~-G~Ytc~v~~~~~~-~-~~~-~~~L~V~~~  110 (111)
T 2qsq_A           63 SGREIIYPNASLLIQNIIQNDA-GFYTLHVIKSDLV-N-EEA-TGQFRVYPE  110 (111)
T ss_dssp             CSCEEECTTSCEEECSCCGGGC-EEEEEEEEETTSC-C-EEE-EEEEEEECC
T ss_pred             CCcEEEecCCcEEEccCcccCC-eEEEEEEEeCCCc-E-EEE-EEEEEEecC
Confidence            6899999999999999999996 9999999987432 2 232 456777654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.39  E-value=4.9e-07  Score=60.66  Aligned_cols=54  Identities=48%  Similarity=0.787  Sum_probs=47.0

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++|+.+.++|.|.|.+|+.+|..+.|+|++.|...++...+.....|.|.+|.
T Consensus       154 ~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~  207 (388)
T 2v5m_A          154 YDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI  207 (388)
T ss_dssp             BTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCC
T ss_pred             CCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCC
Confidence            467899999999999999999965999999999999998888766788888753

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=5.1e-07  Score=52.81  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             ccCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          6 FVGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         6 ~~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      ..++||.+..+|   .|.|.+|+.+|+ |.|.|.+.|.     ..+. .++|.|.+|..
T Consensus        47 ~~~~r~~i~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~-----~~~~-~a~L~V~~~P~   98 (100)
T 2yuz_A           47 QESDRLKVVQKGRIHKLVIANALTEDE-GDYVFAPDAY-----NVTL-PAKVHVISGPS   98 (100)
T ss_dssp             CCCSSEEEEECSSEEEEEESSCCGGGC-SEEEEEESSS-----CCCE-EEEEEEECCSC
T ss_pred             CCCCcEEEEEeCCEEEEEECCCChhhC-EEEEEEEcCC-----CeeE-EEEEEEeCCCC
Confidence            346789888877   699999999996 9999999997     2343 67999988643

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.27  E-value=1.1e-06  Score=55.09  Aligned_cols=50  Identities=24%  Similarity=0.368  Sum_probs=38.4

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++||.+.++|.|.|.||+.+|+ |.|.|++.|.. |+...+. ...|.|.++
T Consensus        51 ~~~r~~~~~~gsL~I~~v~~~D~-G~Y~C~~~n~~-g~~~~~~-~~~l~V~~~  100 (176)
T 1hng_A           51 KSGAFEILANGDLKIKNLTRDDS-GTYNVTVYSTN-GTRILNK-ALDLRILEM  100 (176)
T ss_dssp             SSTTEEECTTSCEEESSCCGGGC-EEEEEEEEETT-CCEEEEE-EEEEEEECC
T ss_pred             CCCeEEECCCCcEEEcccccccC-EEEEEEEEeCC-CCEEEEE-EEEEEEeCC
Confidence            36899999999999999999996 99999999976 4432232 346666553

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.27  E-value=7.6e-07  Score=51.68  Aligned_cols=44  Identities=11%  Similarity=0.162  Sum_probs=36.0

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++||.+..+|   .|.|.+|+.+|+ |.|.|.+.|.       +. .++|.|.+|
T Consensus        47 ~~~~~~i~~~g~~~~L~I~~v~~~D~-G~Y~C~a~n~-------~~-sa~L~V~~~   93 (93)
T 1waa_A           47 ASPDCEIIEDGKKHILILHNCQLGMT-GEVSFQAANT-------KS-AANLKVKEL   93 (93)
T ss_dssp             CBTTEEEEEETTEEEEEECSCCGGGC-EEEEEEETTE-------EE-EEEEEEECC
T ss_pred             CCCCEEEEEECCEEEEEECCCChhhC-EEEEEEECCC-------cE-EEEEEEEcC
Confidence            35688888777   699999999996 9999999884       22 579999875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.27  E-value=1.2e-06  Score=56.30  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=36.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++|+.++++|.|.|.||+.+|+ |.|.|.+.|..- ....+. ...|.|.+
T Consensus        56 ~~~R~~~~~ngsL~I~~v~~~Ds-G~Y~c~~~n~~g-~~~~~~-~~~L~V~~  104 (182)
T 1hnf_A           56 EKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSIYDTKG-KNVLEK-IFDLKIQE  104 (182)
T ss_dssp             SCTTEEECTTSCEEECSCCGGGC-EEEEEEEEETTS-CEEEEE-EEEEEEEC
T ss_pred             CCCeEEECCCCCEEECCCChhhC-EEEEEEEEeCCC-ceeEEE-EEEEEEcC
Confidence            46899999999999999999996 999999998743 322222 23455554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=2.9e-06  Score=47.98  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=38.0

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.++.+..+|.|.|.+|+.+|. +.|.|++.|.. |+.  +. ...|.|.++
T Consensus        53 ~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~~   99 (100)
T 2edj_A           53 DPRATIQEQGTLQIKNLRISDT-GTYTCVATSSS-GET--SW-SAVLDVTES   99 (100)
T ss_dssp             CSSCEECTTCCEEEESCCTTTC-CEEEEEEECSS-CCC--BC-CEEEEEESC
T ss_pred             CCCEEEcCCCEEEEccCCcccC-EEEEEEEEcCC-CCE--EE-EEEEEEecC
Confidence            5678888899999999999996 99999999985 332  33 568888775

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.22  E-value=2.2e-06  Score=49.25  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=35.8

Q ss_pred             ccCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          6 FVGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         6 ~~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+++|.+...|   .|.|.+++.+|+ |.|.|++.|.       + ..++|.|.+|
T Consensus        37 ~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~-------~-~~a~l~V~eP   84 (84)
T 2lu7_A           37 ASQGRVQLEQAGARQVLRVQGARSGDA-GEYLCDAPQD-------S-RIFLVSVEEP   84 (84)
T ss_dssp             CCCSSEEEEECSSCEEEEESSCSSTTC-EEEEEECTTT-------C-EEEEEEECCC
T ss_pred             cccccEEEeecCCeEEEEecCCCCccc-EEEEEEECCE-------E-EEEEEEEECC
Confidence            346788888776   499999999996 9999998552       2 2568999887

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.20  E-value=1.6e-06  Score=51.41  Aligned_cols=49  Identities=24%  Similarity=0.384  Sum_probs=37.3

Q ss_pred             ccCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          6 FVGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         6 ~~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..++||.+..+|   .|.|.+|+.+|+ |.|+|++.|.. |+...   .++|.|.+|
T Consensus        55 ~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~~~---~~~l~V~~p  106 (107)
T 3knb_B           55 AASERLSFPADGAEHGLLLTAALPTDA-GVYVCRARNAA-GEAYA---AAAVTVLEP  106 (107)
T ss_dssp             CCCSSEECCEETTEEEEEESSCCGGGC-EEEEEEEEETT-EEEEE---EEEEEEEC-
T ss_pred             cceeeEEEeecCceEEEEEecCChhhC-EEEEEEEEECC-CEEEE---EEEEEEEcC
Confidence            346788887765   599999999996 99999999986 54332   458888764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=3.9e-06  Score=49.04  Aligned_cols=47  Identities=21%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++++.+..+|.|.|.+|+.+|. +.|.|.+.|.. |+..  . ...|.|.++
T Consensus        53 ~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~~--~-~~~l~V~~~   99 (118)
T 2eo9_A           53 DSRIKQLENGVLQIRYAKLGDT-GRYTCIASTPS-GEAT--W-SAYIEVQEF   99 (118)
T ss_dssp             STTEEEEETTEEEEESCCGGGC-CCEEEEEECSS-CEEE--E-ECCEEEECC
T ss_pred             CCeEEEccCCEEEEccCCcCCC-EEEEEEEEcCC-CcEE--E-EEEEEEEeC
Confidence            5788889999999999999996 99999999986 3322  2 346777764

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.14  E-value=3.9e-06  Score=48.31  Aligned_cols=46  Identities=15%  Similarity=0.241  Sum_probs=36.0

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++||.+..+|   .|.|.+|+.+|. +.|.|++.|.     ..+. .+.|.|.+.
T Consensus        50 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~-----~~~~-~~~l~V~~~   98 (106)
T 2dlt_A           50 PSKRITISHVGRFHKLVIDDVRPEDE-GDYTFVPDGY-----ALSL-SAKLNFLEI   98 (106)
T ss_dssp             CCSSCEEEEETTEEEEEESSCCTTTC-SCEEEEEETS-----CCCC-CBCEEEECC
T ss_pred             CCCCEEEEEeCCEEEEEECCCCcCCC-EEEEEEEccC-----CceE-EEEEEEEEE
Confidence            45688888777   899999999996 9999999997     2233 567777653

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.09  E-value=4.4e-06  Score=47.15  Aligned_cols=46  Identities=13%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             CCeEEEe----ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++||.+.    .++.|.|.||+.+|+ |.|.|++.| . |..  +. .+.|.|.+|
T Consensus        58 ~~r~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n-~-~~~--~~-~~~L~V~~~  107 (108)
T 3m45_A           58 DNRIELVRASWHELSISVSDVSLSDE-GQYTCSLFT-M-PVK--TS-KAYLTVLGV  107 (108)
T ss_dssp             CTTEEEEEESSSEEEEEECSCCGGGC-EEEEEEECS-S-SCE--EE-EEEEEEECC
T ss_pred             cCcEEEeecCCCcEEEEECCCChhHC-eEEEEEEEc-C-CCc--EE-EEEEEEEcC
Confidence            4588876    467899999999996 999999999 3 443  22 457777654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=7.1e-06  Score=46.71  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=35.4

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.+|.+..+|.   |.|.+|+.+|. +.|.|++.|.       +. .+.|.|.++
T Consensus        50 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~-------~~-~~~l~V~~~   96 (103)
T 2edf_A           50 KSQKYDVVCEGTMAMLVIRGASLKDA-GEYTCEVEAS-------KS-TASLHVEEK   96 (103)
T ss_dssp             CSSSEEEEEETTEEEEEESSCCTTTC-SEEEEECSSC-------EE-EEEEEECCC
T ss_pred             CCCCEEEEECCCEEEEEECCCCcccC-EEEEEEEccC-------Cc-EEEEEEeCC
Confidence            356888888885   99999999996 9999999991       22 568888763

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.03  E-value=1.4e-05  Score=46.31  Aligned_cols=46  Identities=22%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+   ..|.|.||+.+|. +.|.|++.|.  +...... +.+|.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~--~~~~fg~-gt~L~V~  107 (108)
T 1jhl_L           59 PSRFSGSGSGTDFTLTISSLEPEDF-AMYICQQHNE--YPWTFGG-GTKLEIK  107 (108)
T ss_dssp             CTTEEEEESSSEEEEEECSCCTTCC-SEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CceEEEEecCCEEEEEECCCCHHHC-EEEEEEEccC--CccEECC-CEEEEEE
Confidence            468887643   4799999999996 9999999986  3344454 7888885

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.02  E-value=9.4e-06  Score=45.70  Aligned_cols=50  Identities=18%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVY   63 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~   63 (66)
                      ++++.+ .++.|.|.+++.+|. |.|.|.+.|.. |..  +. ...|.|.+|....
T Consensus        43 ~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~~~~~~   92 (95)
T 4hwu_A           43 NNRTVL-IGEYLQIKGATPRDS-GLYACTAARTV-DSE--TW-IFMVNVTDAAENL   92 (95)
T ss_dssp             CSSEEE-ETTEEEECSCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEECCC----
T ss_pred             CceEEE-eCCEEEECcCCcccC-EEEEEEEccCC-CcE--EE-EEEEEEeCCcccc
Confidence            345555 478999999999996 99999999987 432  32 5688888876543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.1e-05  Score=47.06  Aligned_cols=45  Identities=16%  Similarity=0.172  Sum_probs=35.5

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++||.+..+|   .|.|.||+.+|+ |.|.|.+.|.       +. .++|.|.++.
T Consensus        52 ~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~-------~~-~a~L~V~~~p   99 (104)
T 2eny_A           52 SSSRFQATRQGRKYILVVREAAPSDA-GEVVFSVRGL-------TS-KASLIVRERS   99 (104)
T ss_dssp             BCSSCEEEEETTEEEEEECSCCTTTC-SCEEEEETTE-------EE-EECEEEECCC
T ss_pred             CCCCEEEEEcCCEEEEEECCCCHHHC-EEEEEEECCe-------eE-EEEEEEeCCC
Confidence            45688888777   599999999996 9999988552       22 6789998754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.01  E-value=8.4e-06  Score=46.77  Aligned_cols=43  Identities=21%  Similarity=0.478  Sum_probs=34.3

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++||.+..+|.   |.|.+|+.+|+ +.|.|.+.|.       +. .+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~-------~~-~~~l~V~~   94 (108)
T 2dm7_A           49 DGGRYSLKQDGTRCELQIHDLSVADA-GEYSCMCGQE-------RT-SATLTVRA   94 (108)
T ss_dssp             SSSSCEEEEETTEEEEEESSCCTTTC-SEEEEEETTE-------EE-EEECEEEC
T ss_pred             CCCCEEEEecCCEEEEEECCCCcccC-EEEEEEEcCC-------EE-EEEEEEec
Confidence            457899988888   99999999996 9999999552       22 45777765

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.00  E-value=1.6e-05  Score=45.97  Aligned_cols=44  Identities=18%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++||.+..+|   .|.|.+|+.+|. +.|.|++     |....   .+.|.|.++
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a-----~~~~~---~~~l~V~~~  106 (113)
T 2edh_A           60 DGDRHSLRQDGARCELQIRGLVAEDA-GEYLCMC-----GKERT---SAMLTVRAM  106 (113)
T ss_dssp             CSSSEEEEEETTEEEEEECSCCSTTC-EEEEEEE-----TTEEE---EEEEEECCC
T ss_pred             CCCcEEEEECCCEEEEEECCCChhhC-EEEEEEe-----CCCCE---EEEEEEeCC
Confidence            46799999888   799999999996 9999999     43222   458888764

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.00  E-value=1e-05  Score=46.13  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..+      +.|.|.||+.+|. |.|.|++.+...   ..+. ...|.|.+|
T Consensus        74 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~---~~~~-~~~L~V~~p  126 (126)
T 1eaj_A           74 KGRVHFTSNDLKSGDASINVTNLQLSDI-GTYQCKVKKAPG---VANK-KIHLVVLVK  126 (126)
T ss_dssp             TTTEEECCSCGGGTBCCEEECSCCGGGC-EEEEEEEEETTE---EEEE-EEEEEEEC-
T ss_pred             cCeeEEEcccccCCeEEEEECcCChHHC-eEEEEEEEcCCc---cCCc-EEEEEEEcC
Confidence            578888765      8899999999996 999999998532   2233 557777654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.00  E-value=8.1e-06  Score=50.28  Aligned_cols=49  Identities=16%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+|+.+..+|.|.|.||+.+|. |.|+|++.+...+..  +. ...|.|.++
T Consensus        61 ~~~r~~~~~~~~L~i~~v~~~D~-G~Y~C~~~~~~~~~~--~~-~~~l~V~~~  109 (208)
T 3r4d_A           61 YSGREIIYSNGSLLFQMITMKDM-GVYTLDMTDENYRRT--QA-TVRFHVHQP  109 (208)
T ss_dssp             CCSSEEECTTSCEEECSCCGGGC-EEEEEEEECSSCEEE--EE-EEEEEEECC
T ss_pred             ccceeEEecCCeEEEccccccCC-eEEEEEEEcccCcee--EE-EEEEEeccC
Confidence            36789999999999999999996 999999999864332  22 345666543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.00  E-value=9.9e-06  Score=48.40  Aligned_cols=48  Identities=17%  Similarity=0.045  Sum_probs=36.4

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+.+++.|.|.||+.+|+ +.|.|++...-.|...  . ...|.|..|
T Consensus        62 ~~R~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~g~~~--~-~~~L~V~~p  109 (117)
T 3q0h_A           62 KDRVAPGPGLGLTLQSLTVNDT-GEYFCIYHTYPDGTYT--G-RIFLEVLES  109 (117)
T ss_dssp             TTTEEECSTTCEEECSCCGGGC-EEEEEEEEEETTCCEE--E-EEEEEEECC
T ss_pred             cCcEEeCCceEEEEeeCChhhC-EEEEEEEEECCCCCeE--E-EEEEEEEcc
Confidence            5788887899999999999996 9999998754445432  2 357777654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.99  E-value=7e-06  Score=48.79  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             cCCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++||.+..    .+.|.|.||+.+|. |.|.|++.|.  |....   ...|.|..+
T Consensus        52 ~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~--g~~~~---~~~l~V~~~  102 (124)
T 3rbg_A           52 KNSKYQLLHHSANQLSITVPNVTLQDE-GVYKCLHYSD--SVSTK---EVKVIVLAT  102 (124)
T ss_dssp             CSSCCEEEEEETTEEEEEESSCCGGGC-EEEEEEEESS--SEEEE---EEEEEEECC
T ss_pred             cCCcEEEEeCCCCEEEEEECCCChHHC-EEEEEEEEcC--CCCcE---EEEEEEEeC
Confidence            456787764    58999999999996 9999999998  55333   347777653

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.99  E-value=7.8e-06  Score=47.88  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             CCeEEEeecc------cEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG------DLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG------eL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..++      .|.|.||+.+|. +.|.|++.|... .+....+ +.+|.|.+.
T Consensus        56 ~~r~~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~~~~~~~~fg~-gT~L~V~~~  112 (113)
T 1h5b_A           56 NGRLKSAFDSERARYSTLHIRDAQLEDS-GTYFCAAEASSGSWQLIFGS-GTQLTVMPV  112 (113)
T ss_dssp             ETTEEEECCSSSSSEEEEEECSCCGGGC-EEEEEEEECSSSSSSCEECC-CEEEEEECC
T ss_pred             CCceEEEEccCCCCEEEEEECCCChhhC-EEEEEEEecCCCCcEEEECC-CcEEEEEEC
Confidence            5778876554      899999999996 999999998753 2344444 889988753

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.98  E-value=2.1e-05  Score=44.95  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             eEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         10 KYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        10 ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      ||.+...   +.|.|.+++.+|. +.|.|.+.|       .+. .+.|.|.++.
T Consensus        54 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n-------~~~-~~~l~V~~~p   98 (103)
T 1x44_A           54 RYRIRVEGKKHILIIEGATKADA-AEYSVMTTG-------GQS-SAKLSVDLKS   98 (103)
T ss_dssp             SEEEEEETTEEEEEEEEECTTTC-SEEEEEETT-------EEE-EEEEEEECCC
T ss_pred             EEEEEEcCCEEEEEECCCCcccC-EEEEEEECC-------CcE-EEEEEEeCCC
Confidence            7888765   5799999999996 999999988       233 5688888743

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=9e-06  Score=50.50  Aligned_cols=40  Identities=18%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+.|.|+||..+|+ |.|+|.+.|+. |  ..|. .+.|.|.+|.
T Consensus        79 ~~~L~I~~v~~~D~-G~Y~Cevsn~~-g--~~s~-~~~L~V~~~~  118 (118)
T 2edn_A           79 TVELHIGKVVLGDR-GYYRLEVKAKD-T--CDSC-GFNIDVEAPR  118 (118)
T ss_dssp             EEEEEESSCCTTTC-SCEEEEEECSS-C--EEEE-EECCEEECCC
T ss_pred             eEEEEEeeCChhhC-EEEEEEEEEcC-C--cEEE-EEEEEEEcCC
Confidence            58899999999996 99999999987 3  3444 6788988864

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.97  E-value=2.5e-05  Score=44.42  Aligned_cols=43  Identities=23%  Similarity=0.396  Sum_probs=34.1

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++|.+...|.   |.|.+++.+|. +.|.|.+     |+...   .+.|.|.++
T Consensus        51 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a-----g~~~~---~~~l~V~~~   96 (100)
T 2yuv_A           51 STKYIFEHKGCQRILFINNCQMTDD-SEYYVTA-----GDEKC---STELFVRSG   96 (100)
T ss_dssp             BTTEEEEEETTEEEEEEEEECTTTC-CEEEEEE-----TTEEE---EEEEEECCS
T ss_pred             CCCEEEEecCCEEEEEEcCCCcCcC-EEEEEEE-----CCceE---EEEEEEecC
Confidence            56888887774   99999999996 9999999     44332   468888875

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.96  E-value=1e-05  Score=46.90  Aligned_cols=46  Identities=17%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             CeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          9 GKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         9 ~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      +|+.+. .++.|.|.||+.+|. |.|.|++.+....    + ...+|.|.+|+
T Consensus        64 ~R~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~~~----~-~~~~L~V~dpv  110 (110)
T 2ptt_A           64 GRVYLEENNGALHISNVRKEDK-GTYYMRVLRETEN----E-LKITLEVFDPV  110 (110)
T ss_dssp             TTEEECTTTCCEEESSCCGGGC-EEEEEEEESSSBC----C-EEEEEEEECCC
T ss_pred             CcEEEeCCCccEEECCCCcccC-eEEEEEEEcCCCc----E-EEEEEEEEccC
Confidence            688886 689999999999996 9999999876422    2 14578887764

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=1.3e-05  Score=45.72  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++|.+...|   .|.|.+++.+|. +.|.|++.|.       +. .+.|.|.++
T Consensus        53 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~-------~~-~~~l~V~~~   98 (104)
T 2e6p_A           53 SELLVVKMDGRKHRLILPEAKVQDS-GEFECRTEGV-------SA-FFGVTVQDP   98 (104)
T ss_dssp             BTTBEEEEETTEEEEEESSCCTTTC-EEEEEECSSC-------CC-CEEEEEECC
T ss_pred             CCCEEEEeCCCEEEEEECCCChhhC-EEEEEEECCc-------eE-EEEEEEcCC
Confidence            4577777666   499999999996 9999999986       22 568888774

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.93  E-value=1.3e-05  Score=46.74  Aligned_cols=46  Identities=20%  Similarity=0.412  Sum_probs=34.8

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++   .|.|.+++.+|+ |.|.|.+.|.. |+.  +. ...|.|++
T Consensus        51 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~--~~-~~~l~V~~   99 (100)
T 3knb_A           51 QGRFHIENTDDLTTLIIMDVQKQDG-GLYTLSLGNEF-GSD--SA-TVNIHIRS   99 (100)
T ss_dssp             GGTEEEEECSSEEEEEESSCCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEEC
T ss_pred             cceeeeecccceEEEEEcCCCccCC-EEEEEEEEECC-CEE--EE-EEEEEEEE
Confidence            4578887765   599999999996 99999999986 442  22 45777764

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.93  E-value=9.2e-06  Score=49.95  Aligned_cols=50  Identities=24%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~e   58 (66)
                      ..+||.+..+|.   |.|.|++.+|. +.|.|++.|..- .+...+. +++|.|.+
T Consensus        64 ~~~r~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~a~n~~g~~~~~~g~-gt~L~V~~  117 (133)
T 3khq_A           64 EEGRIVQTQNGSVYTLTIQNIQYEDN-GIYFCKQKCDSANHNVTDSC-GTELLVLG  117 (133)
T ss_dssp             TTTTEEEEEETTEEEEEECSCCGGGC-EEEEEEESSCC-------CC-CEEEEEC-
T ss_pred             eCCCEEEEcCCCEEEEEECCCChHHC-EEEEEEEEeCCCCcceeECC-CEEEEEEe
Confidence            367999987775   99999999996 999999998752 1333454 78999987

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.92  E-value=1.6e-05  Score=51.08  Aligned_cols=52  Identities=12%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..++.     |.|.+|+.+|+ |.|.|++.|.-......-..+.+|.|+.+.
T Consensus       199 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~g~gt~l~V~~~~  255 (256)
T 3ux9_B          199 KGRFTISRDNSKNTLYLQMNSLRAEDT-AVYYCARYIDFGDHMDFWGQGTLVTVSSLE  255 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEETTTTEEEEECCCEEEEECCC-
T ss_pred             cceEEEEecCCCCEEEEEECCCChhhC-EEEEEEEEcCCCcceEEECCCeEEEEecCC
Confidence            45888876554     99999999996 999999998532222233348899998653

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=1.2e-05  Score=46.38  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++|.+...|   .|.|.+++.+|. +.|.|.+.|       .+. .+.|.|.++
T Consensus        56 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n-------~~~-~~~l~V~~~  101 (113)
T 2cpc_A           56 SPALLLQKEDTVRRLVLPAVQLEDS-GEYLCEIDD-------ESA-SFTVTVTEP  101 (113)
T ss_dssp             BTTBEEEECSSEEEEEESSCCTTTC-EEEEEESSS-------CEE-EEEEEEECC
T ss_pred             CCCEEEEECCCEEEEEECCCCcccC-EEEEEEEec-------CcE-EEEEEEecC
Confidence            4577777665   799999999996 999999998       222 567777764

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.92  E-value=2.3e-05  Score=48.62  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..   ++.|.|.||+.+|+ |.|.|++.|...+....+. ...|.|..
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~-~~~l~V~~  109 (213)
T 3mj8_L           58 PDHFSGSNSGNMATLTISKAQAGDE-ADYYCQSWDGTNSAWVFGS-GTKVTVLG  109 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEETTTTEEEEBC-CEEEEEEC
T ss_pred             cCcEEEEecCCEEEEEECCCChhhC-EEEEEEeccCCcceeEEcC-ceEEEEeC
Confidence            46787654   45699999999996 9999999998765444454 66777763

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.91  E-value=2.5e-05  Score=43.92  Aligned_cols=49  Identities=37%  Similarity=0.607  Sum_probs=36.5

Q ss_pred             cCCeEEE-eecc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          7 VGGKYVV-LSSG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         7 ~~~ry~i-lpsG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+++|.+ ...|  .|.|.+|+.+|. +.|.|++.|.. |+..  . .+.|.|.+.+
T Consensus        45 ~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~~--~-~~~l~V~~~~   96 (97)
T 2bk8_A           45 NSEKYEITYEDGVAILYVKDITKLDD-GTYRCKVVNDY-GEDS--S-YAELFVKGVR   96 (97)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGGGC-EEEEEEEECSS-CEEE--E-EEEEEETTTC
T ss_pred             CCCCEEEEEcCCeEEEEEecCChhhC-eEEEEEEECCC-CeEe--E-EEEEEEEecC
Confidence            3567777 3566  899999999996 99999999985 3322  2 4578887643

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=97.90  E-value=2.1e-05  Score=44.04  Aligned_cols=46  Identities=26%  Similarity=0.554  Sum_probs=34.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..++.+..+|   .|.|.+++.+|. +.|.|++.|.. |+.  +. ...|.|.+
T Consensus        50 ~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~-g~~--~~-~~~l~V~~   98 (99)
T 1u2h_A           50 QRRFAEEAEGGLCRLRILAAERGDA-GFYTCKAVNEY-GAR--QC-EARLEVRG   98 (99)
T ss_dssp             TTEEEEECGGGEEEEEESSCCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEEC
T ss_pred             CCEEEEECCCCEEEEEEccCCcCCC-EEEEEEEEECC-Cce--eE-EEEEEEEC
Confidence            4567777776   499999999996 99999999986 332  22 44777764

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=97.90  E-value=2.5e-05  Score=44.17  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=32.6

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++|.+...|   .|.|.+|+.+|+ |.|.|.+     |+..  . .++|.|.|
T Consensus        50 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a-----g~~~--~-~~~l~V~e   95 (95)
T 2k1m_A           50 ASNKYGLATEGTRHTLTVREVGPADQ-GSYAVIA-----GSSK--V-KFDLKVIE   95 (95)
T ss_dssp             SSTTCEEEEETTEEEEEESSCCTTCC-SEEEEEE-----TTEE--E-EEEEEEEC
T ss_pred             CCCcEEEEEcCCEEEEEEcCCCcccC-EEEEEEE-----CCce--E-EEEEEEeC
Confidence            34678887776   499999999996 9999999     4422  2 46888765

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.90  E-value=1.5e-05  Score=45.36  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             CCeEEEee--------cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS--------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp--------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+.+        ++.|.|.||+.+|+ +.|.|++.+.-.|  ..+. ...|.|..
T Consensus        62 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~--~~~~-~~~L~V~~  116 (118)
T 3udw_C           62 SKRLEFVAARLGAELRNASLRMFGLRVEDE-GNYTCLFVTFPQG--SRSV-DIWLRVLA  116 (118)
T ss_dssp             CSSEEETTCCTTSCCCBCCEEECSCCGGGC-EEEEEEEEEETTE--EEEE-EEEEEEEC
T ss_pred             cCcEEEecccccCCCCCcEEEEeecChHHC-eEEEEEEEECCCC--Cccc-eEEEEEEe
Confidence            56777766        67999999999996 9999999884333  2333 45677654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=97.88  E-value=3e-05  Score=47.07  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+.  +   +..|.|.|++.+|. +.|.|++.+.........+..++|.|++..
T Consensus        61 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           61 DCRFRVTQLPNGRDFHMSVVRARRNDS-GTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             -CCEEEEECTTSSEEEEEESSCCGGGC-EEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhHC-EEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            4688886  3   24699999999996 999999998765543333337899998743

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.88  E-value=1.8e-05  Score=50.91  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..++   .|.|.+|+.+|. +.|.|++.|...+....+. ..+|.|.++.
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~  115 (256)
T 3ux9_B           62 PDRFSGSKSGTSASLAITGLQSEDE-ADYYCQVRDNNENEWVFGG-GTKLTVLGSG  115 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTTTEEEECC-CEEEEEC---
T ss_pred             CCcEEEEccCCEEEEEECCCChhhC-EEEEEEEEECCCCceEECC-CEEEEEECCC
Confidence            4688887655   699999999996 9999999987666655555 6678777643

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.88  E-value=1e-05  Score=49.22  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS   48 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S   48 (66)
                      .+++|.+..+|.|.|.+++.+|. |.|.|.+.|..+++....
T Consensus       145 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~~~~~~~~  185 (191)
T 1epf_A          145 KDVRFIVLSNNYLQIRGIKKTDE-GTYRCEGRILARGEINFK  185 (191)
T ss_dssp             CCTTEEECTTSCEEETTCCGGGC-EEEEEEEEEGGGTEEEEE
T ss_pred             CCceEEEecCCeEEECCCChhhC-EEEEEEEEEecceeEEEE
Confidence            35688999999999999999995 999999999998886543

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.87  E-value=3.3e-05  Score=43.76  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++++.+...|   .|.|.+++.+|. +.|.|++.|.       + ....|.|.+|
T Consensus        53 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~~~-------~-~~~~l~V~~p   99 (102)
T 2eo1_A           53 SSSKVRVEAVGCTRRLVVQQAGQAEA-GEYSCEAGGQ-------Q-LSFRLQVAGQ   99 (102)
T ss_dssp             CCSSEEEEEETTEEEEEETTCCTTTC-SCEEEEETTE-------E-CCEEEEEESC
T ss_pred             CCCCEEEEEcCCEEEEEECCCCcccC-EEEEEEcCCC-------c-EEEEEEEeCC
Confidence            35688888776   799999999996 9999999542       2 2478899886

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=9e-06  Score=46.37  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             eEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         10 KYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        10 ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ||.+...|.   |.|.+++.+|. |.|.|.+.|       .+. .++|.|.++
T Consensus        57 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n-------~~~-~~~l~V~~~  100 (101)
T 2edk_A           57 RYRFKKDGKRHILIFSDVVQEDR-GRYQVITNG-------GQC-EAELIVEEK  100 (101)
T ss_dssp             CCEEEECSSEEEEECSSCCGGGC-SBEEEECSS-------CEE-CCBEEEECC
T ss_pred             eEEEEECCCEEEEEECCCChhhC-EEEEEEEcC-------CcE-EEEEEEeCC
Confidence            788887774   99999999996 999999987       122 568888764

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=97.86  E-value=2.6e-05  Score=46.28  Aligned_cols=53  Identities=17%  Similarity=0.161  Sum_probs=36.0

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYS   64 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~~   64 (66)
                      .+||.+..++   .|.|.|++.+|. +.|.|++.+.  +...... +.+|.|.+.....|
T Consensus        61 ~~R~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~--~~~~fg~-gt~L~V~~~~~~~p  116 (120)
T 1oaq_L           61 PARFSGSLIGNKAALTITGAQTEDE-AIYFCALWYS--NHLVFGG-GTKLTVLGQPKSSP  116 (120)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGC-EEEEEEEEET--TEEEECC-CEEEEECC------
T ss_pred             CCceEEecCCCeEEEEECCCChhhC-eEEEEEEccC--CCcEECC-CEEEEEcCCCCCCC
Confidence            4688776433   699999999996 9999999875  2344444 77999987543333

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.86  E-value=1.6e-05  Score=50.20  Aligned_cols=45  Identities=13%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             CeEEE-eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          9 GKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~i-lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +|+.+ ..+|.|.|.||+.+|+ |.|+|++.+..    ..+. ...|.|.++
T Consensus        60 ~R~~l~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~----~~~~-~~~L~V~~~  105 (180)
T 2dru_A           60 DRVDLDKTNGALRIYNVSKEDR-GDYYMRMLHET----EDQW-KITMEVYEM  105 (180)
T ss_dssp             TTEEECTTTCCEEECSCCGGGC-EEEEEEEESSS----EEEE-EEEEEEECC
T ss_pred             CeEEEeCCCccEEEcCCCHHHC-eEEEEEEEcCC----eEEE-EEEEEEECC
Confidence            78888 6899999999999996 99999997764    2222 446666654

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.86  E-value=2e-05  Score=47.79  Aligned_cols=46  Identities=11%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++||.+..    ++.|.|.||+.+|. |.|.|.+.|.  |..  +. ...|.|.++
T Consensus        90 ~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~--~~~--~~-~~~L~V~~~  139 (145)
T 1z9m_A           90 DNRIQLVTSTPHELSISISNVALADE-GEYTCSIFTM--PVR--TA-KSLVTVLGI  139 (145)
T ss_dssp             CTTEEEEEECSSEEEEEECSCCGGGC-EEEEEEECSS--SCE--EE-EEEEEEECC
T ss_pred             cCCEEEecCCCCeEEEEECCCChhhC-EEEEEEEEcC--CCc--eE-EEEEEEEeC
Confidence            46777765    67899999999996 9999999998  543  32 558888764

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.86  E-value=2.8e-05  Score=48.70  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=35.1

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcE-EecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~-~~S~~~~~l~v~e   58 (66)
                      .+||.+..     ++.|.|.||+.+|+ |.|.|++.|...... ..+. ..+|.|..
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  119 (219)
T 1c1e_H           65 KGRFAFFLETSATTAYLQINNLKNEDM-ATYFCARGTTIVRAMDYWGQ-GTSLTVSS  119 (219)
T ss_dssp             CSSEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEETTTTEEEEECC-CEEEEECC
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccC-EEEEEEEeccCcccceeecC-ceEEEEec
Confidence            47888865     36899999999996 999999998753221 2222 45666654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.84  E-value=1.9e-05  Score=53.95  Aligned_cols=41  Identities=22%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      ..+++...+|.|+|.+|+.+|. |.|+|.+.|..+.....+.
T Consensus       148 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~~~~~~  188 (384)
T 3kld_A          148 NRRFVSQETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGP  188 (384)
T ss_dssp             SSEEECTTTCCEEESSCCGGGC-EEEEEEEEETTTTEEEECC
T ss_pred             ccEEEEcCCCcEEEeecCHHHC-ceEEEEEecccccceeeCC
Confidence            4456666799999999999996 9999999999876654443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=3e-05  Score=43.77  Aligned_cols=42  Identities=24%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++.|.|.+|+.+|. +.|.|++.|...+.. .+. ...|.|.++
T Consensus        55 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~~~~~-~s~-~~~v~V~~~   96 (96)
T 2ens_A           55 PSPVLILPEIGPQDQ-GTYSCVATHSSHGPQ-ESR-AVSISIIEP   96 (96)
T ss_dssp             CCSEEEEESCCTTTC-EEEECEECCSSCCCE-ECC-CEEEEECCC
T ss_pred             CCCEEEECCCCcccC-EEEEEEEEeCCCCcE-EEE-EEEEEEeCC
Confidence            477899999999996 999999999865543 343 667777764

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.82  E-value=2.5e-05  Score=50.45  Aligned_cols=50  Identities=20%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+..++.   |.|.+|+.+|. +.|.|++.|.  +...... +.+|.|.++..
T Consensus       196 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~--~~~~fg~-gt~L~V~~~~~  248 (256)
T 3umt_A          196 PKRFSGSRSGSDYSLTISSLESEDF-VDYYCLQYAS--SPPTFGG-GTKLEIKRAAA  248 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-SEEEEEECSS--SSCEECC-CEEEEEC----
T ss_pred             CCCEEEecCCCEEEEEECCCChhHC-EEEEEEEeeC--CCcEECC-CEEEEEECCCc
Confidence            46787765554   99999999996 9999999984  4556666 88999987543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.81  E-value=3.4e-05  Score=45.49  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++    .|.|.+|+.+|. |.|.|++.|..- +.  +. .+.|.|.++
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G-~~--~~-~~~l~V~~~  110 (116)
T 2kkq_A           60 TDRISLYQDNTGRVTLLIKDVNKKDA-GWYTVSAVNEAG-VT--TC-NTRLDVTAR  110 (116)
T ss_dssp             BTTEEEEECTTCEEEEEEEEECGGGC-EEEEEEEEETTE-EE--EE-EEEEEEECC
T ss_pred             CCeEEEEeCCCCeEEEEECCCCcccC-EEEEEEEEcCCC-eE--EE-EEEEEEeCC
Confidence            4678887665    699999999996 999999999863 32  33 568888763

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.80  E-value=2.7e-05  Score=46.76  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=37.0

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAV   62 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~   62 (66)
                      .+||.+.+++   .|.|.||+.+|. +.|.|++.+.  ....... +.+|.|++..++
T Consensus        63 ~~r~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-gT~L~V~~~g~~  116 (126)
T 4ffy_L           63 PARFSGSGSETDFTLTIDSVETDDA-ATYYCQQNNE--DPYTFGG-GTKLEIKGGGGS  116 (126)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEEC----
T ss_pred             CCcEEEecCCCEEEEEECCCCHHHC-EEEEEEEecC--CCcEECC-CEEEEEecCCCC
Confidence            4677776433   599999999996 9999999975  3445555 889999976443

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.80  E-value=3.2e-05  Score=51.29  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccc
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAV   62 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~   62 (66)
                      .+||.+..++.   |.|.+|+.+|. +.|.|.+.|...+....+. +.+|.|.+....
T Consensus       199 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~g~-~t~l~V~~~~~~  254 (280)
T 3fku_X          199 SERFSASRSGNTASLTITGLQPEDE-ADYYCSTWDSSLSAVVFGG-GTKLTVLGQPKA  254 (280)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-SEEEEEEEETTTTEEEEBC-CCEEEEC-----
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHC-EEEEEEEecCCCCceEECC-CEEEEECCCCCC
Confidence            46888876555   99999999996 9999999987655555665 778888764443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.79  E-value=4.9e-05  Score=43.11  Aligned_cols=45  Identities=31%  Similarity=0.589  Sum_probs=34.9

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++||.+..+|.   |.|.||+.+|+ +.|.|+     .|+  .+. .+.|.|.++.
T Consensus        50 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~-----~g~--~~~-~~~l~V~~~p   97 (103)
T 2e7b_A           50 PGDKYSLRQEGAMLELVVRNLRPQDS-GRYSCS-----FGD--QTT-SATLTVTALP   97 (103)
T ss_dssp             CSSSEEEEECSSEEEEEECSCCTTTC-CCEEEE-----CSS--CBC-CBCEEEECCC
T ss_pred             CCCcEEEEEcCCEEEEEEccCCcccC-EEEEEE-----ECC--cEE-EEEEEEEecc
Confidence            467899999997   99999999996 999998     333  222 5688887743

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.78  E-value=3.3e-05  Score=46.28  Aligned_cols=50  Identities=18%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccc
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAV   62 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~   62 (66)
                      .+|+.+..+      +.|.|.||+.+|+ |.|.|++.+.. |  ..+. ...|.|.+|.-.
T Consensus        70 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~-~--~~~~-~~~L~V~~P~~~  125 (139)
T 1pko_A           70 RGRTELLKESIGEGKVALRIQNVRFSDE-GGYTCFFRDHS-Y--QEEA-AVELKVEDPFYW  125 (139)
T ss_dssp             TTSEEEECTTGGGTEEEEEESSCCGGGC-EEEEEEEEETT-E--EEEE-EEEEEEECTTTT
T ss_pred             CCceEEccccccCCeEEEEEccCCHHHC-EEEEEEEEcCC-C--ceEE-EEEEEEecCcCc
Confidence            478877653      5799999999996 99999999864 2  2333 568888876543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.77  E-value=5e-05  Score=47.22  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.|...+....+. ...|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~~~~~~~~~-~~~l~V~  107 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDE-AAYYCLSSYGDNNDLVFGS-GTQLTVL  107 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGC-SEEEEEEEETTTTEEEECC-CEEEEEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccC-EEEEEEEEcccCcccccCC-ceEEEEc
Confidence            4788887543   799999999996 9999999974333333333 4566664

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.77  E-value=3.1e-05  Score=45.42  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=35.7

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+.  ++....+ +.+|.|.
T Consensus        65 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~V~  113 (114)
T 1eeq_A           65 PDRFSGSGSGTDFTLTISSLQAEDV-AVYYCQQYYS--HPYSFGQ-GTKLEIK  113 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CCCEEEeecCCEEEEEECCCCcccC-EEEEEEEeeC--CeEEECC-CEEEEEe
Confidence            4788886543   699999999996 9999999975  4444454 7888885

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=8.5e-05  Score=42.56  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             CCeEEEee--cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS--SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp--sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++|.+..  .|  .|.|.+|+.+|. +.|.|.+.|..- ..  +. ...|.|.++
T Consensus        53 ~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~g-~~--~~-~~~l~V~~~  103 (110)
T 2dm2_A           53 SDHYTIQRDLDGTCSLHTTASTLDDD-GNYTIMAANPQG-RI--SC-TGRLMVQAV  103 (110)
T ss_dssp             CSSEEEEECTTCEEEEEESSCCTTTC-SCCEEEEECTTC-CE--EE-CCCEEEECC
T ss_pred             CCeEEEEECCCcEEEEEECCCChhhC-EEEEEEEEECCC-eE--EE-EEEEEEECC
Confidence            46777765  35  599999999996 999999999874 33  32 457888764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.77  E-value=6.8e-05  Score=43.36  Aligned_cols=46  Identities=20%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +++|.+..   .+.|.|.+|+.+|. +.|.|++.|.. |.  .+. ...|.|.+
T Consensus        51 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~-g~--~~~-~~~l~V~~   99 (114)
T 2cqv_A           51 SEHMKVENSENGSKLTILAARQEHC-GCYTLLVENKL-GS--RQA-QVNLTVVD   99 (114)
T ss_dssp             SSSEEEEECSSEEEEEETTCCTTTC-EEEEEEEECSS-CE--EEC-CEEEEEEC
T ss_pred             CCCEEEEEcCCEEEEEECCCChhcC-EEEEEEEEECC-Cc--EEE-EEEEEEEC
Confidence            45777764   56799999999996 99999999986 33  233 55777765

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=97.77  E-value=2.1e-05  Score=45.53  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.||+.+|. |.|+|.+.|.. |+.  +. ...|.|.+
T Consensus        71 ~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~--~~-~~~L~V~~  108 (108)
T 3cx2_A           71 LFELHITDAQPAFT-GSYRCEVSTKD-KFD--CS-NFNLTVHE  108 (108)
T ss_dssp             EEEEEECSCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEEEC
T ss_pred             eEEEEEecCCCccC-EEEEEEEecCC-Cce--EE-EEEEEEeC
Confidence            57899999999996 99999999985 432  22 45777653

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=97.76  E-value=3.3e-05  Score=44.91  Aligned_cols=46  Identities=17%  Similarity=0.178  Sum_probs=34.7

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+   ..|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-gT~l~V~  107 (108)
T 1qfw_M           59 PDRFTGSGSATDFTLTISSVQAEDF-ADYHCGQTYN--HPYTFGG-GTKLEIK  107 (108)
T ss_dssp             CTTEECCBCSSEEEEEESSCCTTCC-SEEEEEECSS--SSCEECC-CEEEECC
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhC-EEEEEEEccC--CceEECC-CEEEEEc
Confidence            467877543   3699999999996 9999999975  3444454 7788774

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.76  E-value=2.8e-05  Score=48.94  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +|+.+..+|.|.|.||+.+|+ |.|.|++.+...
T Consensus        62 ~R~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~   94 (193)
T 2if7_A           62 KRLNFTQSYSLQLSNLKMEDT-GSYRAQISTKTS   94 (193)
T ss_dssp             TTEEECTTCCEEECSCCGGGC-EEEEEEEECSSC
T ss_pred             ccEEECCCeEEEECCCCcccC-ceEEEEEEecCC
Confidence            577788899999999999996 999999998754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.75  E-value=3.1e-05  Score=48.22  Aligned_cols=42  Identities=24%  Similarity=0.403  Sum_probs=33.0

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +..+|.|.|.+|+.+|+ |.|+|++.+...+...  . ...|.|..
T Consensus        73 ~~~~~~L~i~~v~~~D~-G~Y~C~~~~~~~~~~~--~-~~~l~V~~  114 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDE-RDYVCVVRAGAAGTAE--A-TARLNVFA  114 (231)
T ss_dssp             ECTTCCEEESSCCGGGC-EEEEEEEECGGGCEEE--E-EEEEEEEB
T ss_pred             cCCCceEEEcccCcccC-ceEEEEEEecCCCceE--E-EEEEEEEe
Confidence            77889999999999996 9999999998755432  2 34666654

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.73  E-value=2.9e-05  Score=45.09  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=34.1

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-gt~l~V  106 (107)
T 1i8k_A           59 PSRFSSSGTGTDFVFTIENTLSEDV-GDYYCLQSFN--VPLTFGC-GTKLEI  106 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEC
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHC-EEEEEEEeeC--CCcEECC-CeEEEe
Confidence            4688876543   699999999996 9999999875  3344444 777776

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.72  E-value=5.4e-05  Score=46.94  Aligned_cols=48  Identities=23%  Similarity=0.473  Sum_probs=36.6

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+++.+..+|.|.|.+++.+|. +.|+|++.|.+ |... ++ ...|++..
T Consensus       160 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~-G~~~-~~-~~~lv~~~  207 (217)
T 2vr9_A          160 ASSRVRIVDGGNLLISNVEPIDE-GNYKCIAQNLV-GTRE-SS-YAKLIVQV  207 (217)
T ss_dssp             CCCSEEEETTTEEEESSCCSTTC-EEEEEEEEETT-EEEE-CC-CEEEEEC-
T ss_pred             cCCcEEecCCCcEEEeeCCHHHC-eEEEEEEEccc-ceec-cc-cEEEEEEe
Confidence            45678888899999999999996 99999999986 4332 22 55666653

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.72  E-value=3.9e-05  Score=46.23  Aligned_cols=39  Identities=23%  Similarity=0.500  Sum_probs=33.8

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      .++++.+..+|.|.|.+++.+|. |.|+|++.|...+...
T Consensus        47 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~~~   85 (189)
T 2v5t_A           47 SDNRFAMLANNNLQILNINKSDE-GIYRCEGRVEARGEID   85 (189)
T ss_dssp             CCTTEEECTTSCEEETTCCGGGC-EEEEEEEEETTTTEEE
T ss_pred             cCCeEEEecCCCEEEeeCCHhHC-cEEEEEEEEcCCCceE
Confidence            36788899999999999999996 9999999998876543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=97.71  E-value=5.4e-05  Score=43.96  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=34.3

Q ss_pred             cCCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++++.+..   .+.|.|.+|+.+|. |.|.|.+.|..-.   .+. ...|.|.
T Consensus        57 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~---~~~-~~~l~V~  105 (106)
T 1nct_A           57 TSARHQVTTTKYKSTFEISSVQASDE-GNYSVVVENSEGK---QEA-EFTLTIQ  105 (106)
T ss_dssp             TCSSEEEEECSSEEEEEECCCCSSCC-SEEEECCBCSSCB---CCE-EEEEEEC
T ss_pred             CCCCEEEEECCCEEEEEECcCCchhC-EEEEEEEEeCCCe---EEE-EEEEEEE
Confidence            356787765   57899999999996 9999999998633   222 4466654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.71  E-value=6.6e-05  Score=45.46  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV   49 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~   49 (66)
                      .++....+|.|.|.+|+.+|+ +.|+|++.|...+....+.
T Consensus        58 ~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~~~~~~~~~~~~   97 (201)
T 3s97_C           58 RRFVSQTNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSK   97 (201)
T ss_dssp             SEEECTTTCCEEESSCCGGGC-EEEEEEEEEGGGTEEEECC
T ss_pred             CeEEEcCCCeEEECcCCcccC-eEEEEEEEecCCCcchhhc
Confidence            345556799999999999996 9999999998766655443

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.71  E-value=5.6e-05  Score=44.18  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=32.5

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +||.+..+|   .|.|.+|+.+|+ |.|.|.+.+     .  +. .++|.|.|
T Consensus        61 ~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~-----~--~~-~~~l~V~e  104 (104)
T 1pd6_A           61 SKYIFESIGAKRTLTISQCSLADD-AAYQCVVGG-----E--KC-STELFVKE  104 (104)
T ss_dssp             SSSEEEEETTEEEEEECSCSSSSC-EEEEEEETT-----E--EE-CCEEEEEC
T ss_pred             CeEEEEecCCEEEEEECCCCcccC-EEEEEEECC-----C--cE-EEEEEEeC
Confidence            688888888   899999999996 999999943     2  22 46787764

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.71  E-value=3.3e-05  Score=45.02  Aligned_cols=45  Identities=20%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|
T Consensus        63 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-gT~l~V  110 (111)
T 1j05_L           63 PVRFSGTGSRTDFTLIIDPVEADDV-ATYYCQQTNE--DPYTFGG-GTKLEI  110 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEC
T ss_pred             CCcEEEEccCCEEEEEECCCCcccC-EEEEEEEecC--CCCEECC-CEEEEE
Confidence            4688886543   699999999996 9999999875  3344444 677766

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=97.71  E-value=3.7e-05  Score=46.17  Aligned_cols=48  Identities=23%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             CCeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|..+. .+|.|.|.||+.+|. |.|+|++.+.- +.. .+. ...|.|.++
T Consensus        63 ~~R~~l~~~~~sL~I~nv~~~Ds-G~Y~c~v~~~~-~~~-~~~-~~~L~V~~~  111 (121)
T 2edo_A           63 KGRVRLDPQSGALYISKVQKEDN-STYIMRVLKKT-GNE-QEW-KIKLQVLDP  111 (121)
T ss_dssp             TTTCEECTTTCCEEESSCCGGGC-SEEEEEEEETT-TEE-EEC-CEECEEECC
T ss_pred             CCcEEEeCCCceEEEeCCCHHHC-eEEEEEEEcCC-CcE-EEE-EEEEEEECC
Confidence            4577776 799999999999996 99999998653 222 232 446777654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.70  E-value=3.5e-05  Score=48.74  Aligned_cols=48  Identities=17%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ++||.+..     .+.|.|.+|+.+|. |.|.|.+.|...++..... +.+|.|.
T Consensus       185 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~~~~g~-gt~l~V~  237 (238)
T 2p1y_A          185 DGRFTIFFNKREKKLSLHIADSQPGDS-ATYFCAAIDTNAYKVIFGK-GTHLHVL  237 (238)
T ss_dssp             ETTEEEEEETTTTEEEEEETTCCGGGC-EEEEEEEEETTTTEEEECC-CEEEEEE
T ss_pred             CCceEEEecCCCCeEEEEEcCCCHHHC-EEEEEEEeeCCCCeEEECC-CEEEEEe
Confidence            46777753     36899999999996 9999999998666666665 7888874

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=8.4e-05  Score=42.11  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=34.0

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.||.+...|   .|.|.+|+.+|. +.|.|.     .|+.  +. .+.|.|.++
T Consensus        50 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~-----~g~~--~~-~~~l~V~~~   96 (103)
T 2dku_A           50 ASGKHQPSQEGLTLRLTISALEKADS-DTYTCD-----IGQA--QS-RAQLLVQGR   96 (103)
T ss_dssp             SSSSEEEEEETTEEEEEEESCCTTTC-SEEEEE-----CSSC--BC-CEEEEEECS
T ss_pred             CCCeEEEEeCCCEEEEEECCCCcccC-EEEEEE-----eCCc--eE-EEEEEEeCc
Confidence            45689998888   899999999996 999998     3432  22 568888764

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=97.69  E-value=3e-05  Score=45.16  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..   +..|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-gT~L~V~  109 (109)
T 2q20_A           61 PSRFSGSGSGTDFTFTISSLQPEDI-ATYYCQQYDN--LPYTFGQ-GTKLEIK  109 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCCBCC-CEEEEEC
T ss_pred             CCcEEEeccCCEEEEEECCCChhhC-EEEEEEEeeC--CcceECC-CEEEEEC
Confidence            56888764   34799999999996 9999999875  3333444 7788773

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=97.69  E-value=5.9e-05  Score=42.54  Aligned_cols=48  Identities=23%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.+|.+...+   .|.|.+++.+|. +.|.|.+.|..- +.  +. .+.|.|++.
T Consensus        51 ~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~G-~~--~~-~~~l~V~~~  101 (103)
T 3qp3_A           51 ESSKIHYTNTSGVLTLEILDCHTDDS-GTYRAVCTNYKG-EA--SD-YATLDVTGG  101 (103)
T ss_dssp             CCSSEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTE-EE--EE-EEEEEEECC
T ss_pred             CCCCEEEEECCCEEEEEEcCCCcccC-EEEEEEEEeCCC-cE--EE-EEEEEEECC
Confidence            34678777654   599999999996 999999999753 22  33 557887753

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.68  E-value=4.8e-05  Score=48.55  Aligned_cols=48  Identities=15%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecc-ccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNK-ITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~-lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..++     .|.|.+|+.+|. +.|.|++.++ -.++..... +.+|.|+
T Consensus       196 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~g~-gt~L~V~  249 (250)
T 3esu_F          196 KGKATLTADKSSSTAYMQLSSLTSVDS-AVYFCARSGLLRYAMDYWGQ-GTSVTVS  249 (250)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECSSTTCCCEECC-CEEEEEC
T ss_pred             cceEEEEecCCCCeEEEEECCCCcccC-EEEEEEEecCCCccHhhcCC-CcceEec
Confidence            4788887655     599999999996 9999999973 234445555 7888886

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=97.68  E-value=7.2e-05  Score=43.50  Aligned_cols=46  Identities=17%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+.  ++   ..|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|.
T Consensus        58 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~V~  108 (109)
T 1pew_A           58 PDRFAGSIDRSSNSASLTISGLKTEDE-ADYYCQSYDA--RNVVFGG-GTRLTVL  108 (109)
T ss_dssp             CTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEET--TEEEECC-CEEEEEC
T ss_pred             CCcEEEEeccCCCEEEEEECCCChhhC-EEEEEEEEeC--CceEECC-CEEEEEe
Confidence            4788886  33   3699999999996 9999999874  3444454 7888875

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=97.68  E-value=7e-05  Score=43.17  Aligned_cols=49  Identities=20%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             CCeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCc-EEecccceeEEEe
Q psy10521          8 GGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGE-SQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge-~~~S~~~~~l~v~   57 (66)
                      .+|..+. .++.|.|.||+.+|+ |.|.|++.+.--.. ....-...+|.|.
T Consensus        59 ~~r~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~~~~~~~~~L~V~  109 (110)
T 1ncn_A           59 MGRTSFDSDSWTLRLHNLQIKDK-GLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             TTSEEEETTTTEEEECSCCGGGC-EEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CCcEEEECCCEEEEEcCCChHHC-EEEEEEEEcCCCCceEEEEEEEEEEEEe
Confidence            3566654 468999999999996 99999999875433 2223235567664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.67  E-value=8.4e-05  Score=44.97  Aligned_cols=49  Identities=29%  Similarity=0.473  Sum_probs=37.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.++.+..+|.|.|.+++.+|. +.|+|++.|... .. .+. ...|.|..|
T Consensus       143 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g-~~-~s~-~~~l~V~~p  191 (192)
T 2iep_A          143 ENSRIAVLESGSLRIHNVQKEDA-GQYRCVAKNSLG-TA-YSK-LVKLEVEVF  191 (192)
T ss_dssp             CCSSEEECTTSCEEESSCCGGGC-EEEEEEEEETTE-EE-ECC-CEEEEEEC-
T ss_pred             CCCcEEEecCCcEEEecCChhhC-EEEEEEEEcCCC-cE-EEE-EEEEEEEeC
Confidence            35678888899999999999995 999999999853 22 233 567888764

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=97.67  E-value=2.7e-05  Score=45.99  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      ++.|.|.+|+.+|+ |.|+|.+.+........|. +..|.|+++..
T Consensus        59 ~~~l~i~~v~~~ds-G~Y~C~~~~~~~~~~~~S~-~l~L~V~g~~~  102 (108)
T 4hwn_A           59 SSEFQIPTASEDHS-GSYWCEAATEDNQVWKQSP-QLEIRVQGASA  102 (108)
T ss_dssp             CCEEEESSCCGGGC-EEEEEEEECTTSSSEEECC-CEEECCBC---
T ss_pred             ccEEEeCccCcccC-eEEEEEEEeCCCceeccCC-CEEEEEEecch
Confidence            67899999999996 9999999987544455565 88898887654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.67  E-value=5.9e-05  Score=48.02  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=35.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..+     +.|.|.||+.+|+ |.|+|++.|. .+....+. ...|.|.++
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~-~~~~~~~~-~~~l~V~~~  120 (247)
T 2ghw_B           67 KGRFTISRDNSKNTLYLQMNSLRAEDT-AVYYCARDRS-YYLDYWGQ-GTLVTVSSG  120 (247)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEET-TEEEEECC-CEEEEECSC
T ss_pred             cCcEEEEEeCCCCEEEEEECcCCHHHC-EEEEEeeecc-CCccccCC-ceEEEEecc
Confidence            478888763     3699999999996 9999999987 23333333 457777653

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=97.67  E-value=8e-05  Score=45.61  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccccc
Q psy10521          8 GGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVY   63 (66)
Q Consensus         8 ~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~   63 (66)
                      .+||.+.  +++   .|.|.|++.+|. +.|.|++.+.-.+.......+.+|.|.+.....
T Consensus        69 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~~~~  128 (134)
T 3bik_B           69 DARFQIIQLPNRHDFHMNILDTRRNDS-GIYLCGAISLHPKAKIEESPGAELVVTERILET  128 (134)
T ss_dssp             CTTEEEEECTTSSEEEEEECSCCGGGC-EEEEEEEEECSSSCEEEECCCEEEEEECCC---
T ss_pred             CCCEEEEecCCCCEEEEEECCCChHHC-EEEEEEEEeCCCCceEEEcCCEEEEEeCCCCCC
Confidence            5788874  333   599999999996 999999986543333333338899998755443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.66  E-value=6e-05  Score=48.65  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=36.0

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..++.   |.|.||+.+|. +.|.|.+.|-  +....+. +.+|.|+
T Consensus       208 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~~g~-gt~l~V~  256 (256)
T 3juy_B          208 SDRFSGSGSGTDFTLTITRVEPEDF-ALYYCQVYGA--SSYTFGQ-GTKLERK  256 (256)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECCS--SCCEECC-CEEEEEC
T ss_pred             CCcEEEEccCCEEEEEECCCCHhHC-EEEEEEEeeC--CCceEcC-CEEEEEC
Confidence            46787766555   99999999996 9999999983  5555665 7788774

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.66  E-value=7.3e-05  Score=42.60  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .|.|.+|+.+|. +.|.|.+.|.. |+  .+. ...|.|.++
T Consensus        67 ~L~i~~v~~~D~-G~Y~C~a~n~~-g~--~~~-~~~l~V~~~  103 (110)
T 2dm3_A           67 SLIIEPVTSRDA-GIYTCIATNRA-GQ--NSF-SLELVVAAK  103 (110)
T ss_dssp             EEEESSCCGGGC-SBBCEEEECSS-CE--EEE-CCEEEEECC
T ss_pred             EEEEeeCCcccC-EEEEEEEECCC-CE--EEE-EEEEEEeCC
Confidence            799999999996 99999999987 44  233 558888764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.65  E-value=6e-05  Score=48.53  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++     .|.|.+|+.+|+ +.|.|++.|... .....+. ...|.|.++
T Consensus        72 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~~~~~~~~~~~-~~~l~V~~~  127 (257)
T 3gkz_A           72 KSRISITRDTSKNQVYLQLKSVSSEDT-ATYYCSYFDSDDYAMEYWGQ-GTSVTVSGG  127 (257)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTTCTTCEEECC-CEEEEEC--
T ss_pred             cccEEEEEecCCceEEEEECCCChhhC-EEEEEEEecCCCcceeEEcC-CEEEeecCc
Confidence            4688887644     599999999996 999999998632 2223333 567777664

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=97.65  E-value=9.8e-05  Score=45.37  Aligned_cols=49  Identities=24%  Similarity=0.396  Sum_probs=37.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..++   .|.|.|++.+|. +.|.|++.+.  ....... +.+|.|.+..
T Consensus        64 ~~Rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~--~~~~fg~-GT~L~V~~~~  115 (137)
T 3bdb_A           64 DSRFSMTVNDQKFDLNIIGAREDDG-GEYFCGEVEG--IIIKFTS-GTRLQFEGSN  115 (137)
T ss_dssp             CTTEEEEESSSBEEEEEESCCSTTC-EEEEEEEECS--SCEEEEE-EEEECCCCCC
T ss_pred             CCcEEEEecCCEEEEEECCCCHHHC-EEEEEEEccC--CeEEECC-CEEEEEECCC
Confidence            5788886544   699999999996 9999999874  2344444 7899998644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.65  E-value=0.0001  Score=50.90  Aligned_cols=45  Identities=24%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|+.+ .+|.|.|.+|+.+|+ |.|.|.+.|. .|+...   ...|.|.+
T Consensus       293 ~~r~~~-~~~~L~I~~v~~~D~-G~Y~C~a~N~-~g~~~~---~~~l~V~~  337 (361)
T 2xot_A          293 NGSVSV-RNGDLFFKKVQVEDG-GVYTCYAMGE-TFNETL---SVELKVYN  337 (361)
T ss_dssp             SSSEEE-ETTEEEESSCCTTSC-EEEEEEEECS-SCEEEE---EEEEEEES
T ss_pred             CCceEe-ecCeEEEeecCcccC-EEEEEEEecC-CCccEE---EEEEEEEe
Confidence            358888 999999999999996 9999999999 444332   35777765

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=97.65  E-value=7.5e-05  Score=44.94  Aligned_cols=56  Identities=11%  Similarity=0.120  Sum_probs=40.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccccccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSY   65 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~~~   65 (66)
                      .+||.+.-     +-.|.|+|++.+|. +.|.|++.+...++..... +.+|.|.+...+..|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~fg~-gT~L~V~~~~~~~~~  125 (127)
T 1mqk_H           65 KGRFTISRDNAKNTLYLQMSSLKSEDT-AMYYCVRHEYYYAMDYWGQ-GTTVTVSSAWRHPQF  125 (127)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEETTTEEEEECC-CEEEEECSSCCCC--
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEecCCcCcceECC-CEEEEEeCCcccccc
Confidence            46888863     23699999999996 9999999876323444444 889999987766544

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.64  E-value=4.5e-05  Score=49.16  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..++   .|.|.+|+.+|. +.|.|++.|.  +.....+ +.+|.|.+..
T Consensus       195 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~--~~~~fg~-gt~l~v~~~~  246 (253)
T 3uzq_A          195 PARFSGSGSRTDFTLTINPVEADDV-ATYFCQRSNE--VPWTFGG-GTKLEIKRPL  246 (253)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCCBCC-CEEEEECCC-
T ss_pred             CCceEEeCCCCEEEEEECCCCHHHC-EEEEEEEccC--CCcEECC-CEEEEEcCCC
Confidence            3677776544   499999999996 9999999984  4555565 8899998754

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.64  E-value=7.3e-05  Score=42.03  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             EEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        12 ~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+..+|.|.|.+|+.+|. |.|.|.+.|.. |+.  +. ...|.|.
T Consensus        57 ~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~--~~-~~~l~V~   97 (98)
T 1gl4_B           57 AMDFNGILTIRNVQPSDA-GTYVCTGSNMF-AMD--QG-TATLHVQ   97 (98)
T ss_dssp             EEEETTEEEECSCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEEC
T ss_pred             eecCCCEEEEeCCChhhC-EEEEEEecCCC-Ccc--cc-EEEEEEe
Confidence            345689999999999996 99999999986 332  22 3456553

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.63  E-value=9.4e-05  Score=43.21  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             CCeEEEee---cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS---SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..   ++  .|.|.|++.+|. +.|.|++.+..  ...... +.+|.|.+.
T Consensus        63 ~~R~~~~~~~~~~~~sL~I~~~~~~Ds-G~Y~C~~~~~~--~~~fg~-gT~L~V~~~  115 (116)
T 3bj9_1           63 PPRFSGSKDVARNRGYLSISELQPEDE-AMYYCAMGARS--THVFGS-GTQLTVLSA  115 (116)
T ss_dssp             CTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECCSS--CCEECC-CEEEEEESC
T ss_pred             CCcEEEEecCCCceEEEEECCCChhHC-EEEEEEEeCCC--CcEECC-CEEEEEecC
Confidence            46887754   35  799999999996 99999998753  334444 789998764

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.63  E-value=6.7e-05  Score=48.65  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+..    ++.|.|.||+.+|. +.|.|++.|. .|+...-. +.||+|+++..
T Consensus       197 ~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~-~g~~~fG~-gt~l~v~~~~~  251 (256)
T 3tf7_C          197 PDGYKATRTTQEDFFLTLESASPSQT-SLYFCASSDA-PGQLYFGE-GSKLTVLELEH  251 (256)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGC-EEEEEEEEEE-TTEEEECC-CEEEEEECGGG
T ss_pred             CCceEEEeCCCCeEEEEECCCCHHHC-EEEEEEecCC-CCccEECC-CeEEEEEcccc
Confidence            34565543    34799999999996 9999999986 47776666 89999997654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.62  E-value=5e-05  Score=47.51  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             CCeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|..+. .+|.|.|.||+.+|+ |.|.|.+.|...     +. ...|.|.++
T Consensus        50 ~~R~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~n~~~-----~~-~~~L~V~~~   95 (171)
T 1ccz_A           50 KNRVYLDTVSGSLTIYNLTSSDE-DEYEMESPNITD-----TM-KFFLYVLEM   95 (171)
T ss_dssp             TTSEEECTTTCCEEECSCCGGGC-EEEEEECTTCCS-----CE-EEEEEEECC
T ss_pred             CCcEEEeCCCCeEEECCCChhhC-ceEEEEEeCCCC-----cE-EEEEEEECc
Confidence            3566665 689999999999996 999999988643     22 346666554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.62  E-value=8.1e-05  Score=46.75  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..+   +.|.|.+|+.+|+ |.|.|++.|....+...+. ..+|.|
T Consensus        79 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~-~~~l~V  128 (234)
T 2j6e_L           79 PDRFSGSKSGTSASLAISGLRSEDE-ADYYCATWDDSLSAVIFGG-GTKLTV  128 (234)
T ss_dssp             CTTEEEEEETTEEEEEEESCCSTTC-SEEEEEEEETTTTEEEECC-CBCCCB
T ss_pred             cccEEEEecCCeEEEEECCCCHHHC-EEEEEEEEcCCcceeEecC-CEEEEE
Confidence            468887643   4799999999996 9999999988653233332 345555

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.62  E-value=8e-05  Score=43.57  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+..  .....+ +.+|.|.
T Consensus        64 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~--~~~fg~-gT~l~V~  112 (113)
T 1dlf_L           64 PDRFSGSGSGTDFTLKISRVEAEDL-GVYFCSQSTHV--PFTFGS-GTKLEIK  112 (113)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             CCCEEEEccCCEEEEEECCCChHHC-EEEEEEEecCC--CcEECC-CEEEEEc
Confidence            4678775433   699999999996 99999999753  334444 7788875

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.61  E-value=7.8e-05  Score=45.22  Aligned_cols=46  Identities=24%  Similarity=0.360  Sum_probs=34.6

Q ss_pred             CCeEEEeecc---cEEEeecC-CCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNAT-PNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~-~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++||.+..+|   .|.|.+|+ .+|. +.|.|.+.|.+-. ..  . ...|.|.+
T Consensus       134 ~~~~~~~~~~~~~~L~i~~v~~~~d~-G~Y~C~a~N~~g~-~~--~-~~~l~V~~  183 (184)
T 3b5h_A          134 ESRFFVSSSQGRSELHIENLNMEADP-GQYRCNGTSSKGS-DQ--A-IITLRVRS  183 (184)
T ss_dssp             GGTEEEEEETTEEEEEECSCCTTTSS-EEEEEEEEETTEE-EE--E-EEEEEEC-
T ss_pred             CCEEEEEecCCeeEEEEeeccccccC-ceEEEEEEeCCCc-ce--E-EEEEEEec
Confidence            4788888776   79999999 8995 9999999998743 22  2 24666653

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=97.61  E-value=7.9e-05  Score=44.59  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..   +..|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|.+.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~v~~~  111 (119)
T 2e27_L           61 SSRFSGSGSGRDYSFSISNLEPEDA-ATYYCLQYDN--FTWTFGG-GTKLEIKRA  111 (119)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEECGG--GCCEECC-CEEEEEEC-
T ss_pred             CCcEEEEccCCEEEEEECCCChHHC-EEEEEEEccC--CceEECC-CEEEEEeCC
Confidence            46888764   34699999999996 9999999975  3444454 788988763

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=97.61  E-value=9.8e-05  Score=43.20  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=35.1

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+..     +..|.|.||+.+|. +.|.|++.+.-....... .+.+|.|++
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~v~~~~~~~~~~~-~~~~L~V~~  118 (119)
T 1qfo_A           65 RGRAELMGNMDHKVCNLLLKDLKPEDS-GTYNFRFEISDSNRWLDV-KGTTVTVTT  118 (119)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEECC-CCEEECS-SCEEEEEEC
T ss_pred             eeeEEEeCCCCCCEEEEEEccCCcccC-ceEEEEEEeCCCceeccc-CCeEEEEec
Confidence            47888753     24799999999996 999999987533333333 366888864

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.61  E-value=0.0001  Score=46.89  Aligned_cols=49  Identities=12%  Similarity=0.164  Sum_probs=34.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..+     ..|.|.||+.+|. +.|.|++.+...-+...+. +.+|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~-~~~L~V~~  118 (220)
T 2fbj_H           65 KDKFIISRDNAKNSLYLQMSKVRSEDT-ALYYCARLHYYGYNAYWGQ-GTLVTVSA  118 (220)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGC-EEEEEEEEETTTEEEEECC-CEEEEECS
T ss_pred             CCcEEEEeeCCCCEEEEEECCCChhhC-EEEEEEEeccccccceecC-CEEEEecC
Confidence            478988753     4799999999996 9999999986321112232 45666664

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.61  E-value=9.5e-05  Score=47.07  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+...   +.|.|.+|+.+|. +.|.|.+.|.  ++...+. +.+|.|.
T Consensus       193 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~--~~~~~g~-~t~l~V~  241 (247)
T 2ghw_B          193 PDRFSGSGSGTDFTLTISRLEPEDF-AVYYCQQRSN--WPPTFGQ-GTKVEVK  241 (247)
T ss_dssp             CTTEEEECSSSEEEEEECSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CCCEEEecCCCeEEEEECcCCHHHC-EEEEEEEccC--CCceEcC-CEEEEEC
Confidence            467777543   3599999999996 9999999974  5556665 7899997

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.61  E-value=9.9e-05  Score=46.51  Aligned_cols=44  Identities=11%  Similarity=-0.001  Sum_probs=30.0

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .++...+.+.|.|.+|+.+|+ |.|.|.+.|.  +....|. ...|.|
T Consensus        56 ~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a~n~--~~~~~s~-~~~l~v   99 (213)
T 2x1w_L           56 NRISWDSKKGFTIPSYMISYA-GMVFCEAKIN--DESYQSI-MYIVVV   99 (213)
T ss_dssp             SSCEEETTTEEEEEGGGTTTC-SEEEEEEC------CEECC-CEEEEE
T ss_pred             CcccccCCccEEEccCChhcC-ceEEEEEEEC--CeeEEEE-EEEEEE
Confidence            456667788999999999996 9999999983  3333343 345544

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.60  E-value=0.00012  Score=43.92  Aligned_cols=43  Identities=26%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc---CcEEecccceeEEEeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITGFR   60 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT---ge~~~S~~~~~l~v~ep~   60 (66)
                      +..|.|.||+.+|. +.|.|++.+.-.   .+..... +.+|.|.++.
T Consensus        78 ~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~g~-~t~L~V~~~~  123 (136)
T 2d9c_A           78 DFSISISNITPADA-GTYYCVKFRKGSPDDVEFKSGA-GTELSVRAKP  123 (136)
T ss_dssp             BCCEEESSCCTTTC-EEEEEEEEECCSSSCEEEEECC-CEEEEEECCC
T ss_pred             EEEEEECCCCHHHC-EEEEEEEEeCCCCcccceeeCC-CeEEEEEeCC
Confidence            56799999999996 999999987542   2333443 7799998743

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.60  E-value=7.3e-05  Score=43.73  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+   ..|.|.||+.+|. +.|.|++.+.  ++....+ +.+|.|+
T Consensus        62 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~V~  110 (111)
T 1i3g_L           62 PDRFTGSGSGTDFTLTISNVQSEDL-ADYFCQQYSS--YPLTFGA-GTKLELK  110 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSS--SSCEECC-CEEEEC-
T ss_pred             CCcEEEEcCCCEEEEEECCCCHHHC-EEEEEEEecC--CceEECC-CeEEEEe
Confidence            468887643   3699999999996 9999999876  3444444 7788775

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.60  E-value=0.00011  Score=45.46  Aligned_cols=48  Identities=21%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccC--cEEecccceeEEEec
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG--ESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg--e~~~S~~~~~l~v~e   58 (66)
                      +||.+..   ++.|.|.||+.+|+ |.|.|++.|...+  ....+. ..+|.|..
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~  116 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDE-AIYICGVGDTIKEQFVYVFGG-GTKVTVLG  116 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEEEETTEEEEEECC-CEEEEEES
T ss_pred             cceEEecCCceEEEEEccCCcccC-EEEEEEEecCCCCceeEEEcC-cEEEEEec
Confidence            5777755   34599999999996 9999999987542  122232 55677764

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=97.60  E-value=7.6e-05  Score=48.33  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=27.4

Q ss_pred             CeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +||.+..    ++.|.|.||+.+|+ |.|.|++.+.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~  122 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDS-AVYLCATSAL  122 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGC-EEEEEEEESS
T ss_pred             CcEEEEecCCCEEEEEECCCCcccC-EEEEEEEecC
Confidence            7888876    56799999999996 9999999975

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.59  E-value=0.0001  Score=47.23  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=27.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..     ++.|.|.||+.+|+ +.|.|++.+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~  101 (227)
T 1mju_H           65 KNKATLTVDTSSSTAYMQLSSLTSDDS-AVYYCANKLG  101 (227)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEET
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCcccC-EEEEEEECCC
Confidence            47888864     45899999999996 9999999985

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=97.59  E-value=0.00014  Score=46.61  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  101 (230)
T 3n9g_H           65 QGRVTMTRDTSTSTVYMELSSLRSEDT-AVYYCARDWG  101 (230)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECC
T ss_pred             CCcEEEEecCCCCEEEEEECCCChhhC-EEEEEEEccC
Confidence            47898876655     99999999996 9999999875

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.59  E-value=0.00011  Score=43.01  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=35.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+.. .++....+ +.+|.|.
T Consensus        62 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~fg~-GT~l~V~  115 (116)
T 1tvd_A           62 QGRFSVKHILTQKAFHLVISPVRTEDS-ATYYCAFTLPPPTDKLIFGK-GTRVTVE  115 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEccCChHHC-EEEEEEEeCCCCccceEECC-CeEEEEe
Confidence            57888753     23699999999996 99999999853 34444444 7788875

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=0.00019  Score=41.79  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++.+..   .+.|.|.+++.+|. +.|.|.+.|..-   ..+. ...|.|.++
T Consensus        68 ~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~G---~~~~-~~~l~V~~~  116 (118)
T 2e7c_A           68 SRVHVRTSDFDTVFFVRQAARSDS-GEYELSVQIENM---KDTA-TIRIRVVEK  116 (118)
T ss_dssp             SSCEEEECSSEEEEEESSCCTTTC-EEEEEEEECSSC---EECC-EEEEEEECC
T ss_pred             CcEEEEECCCeEEEEECCCChhcC-EEEEEEEEeCCC---eEEE-EEEEEEEcC
Confidence            4555543   23399999999995 999999999864   2333 567777664

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.59  E-value=0.00019  Score=46.38  Aligned_cols=47  Identities=15%  Similarity=0.167  Sum_probs=36.6

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCc-ceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYK-SYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~-~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+.++.+.+.+.|.|.+++.+|. + .|.|++.|.  +....+. ...|.|.
T Consensus       135 ~~~~~~~~~~~~L~i~~v~~~d~-G~~Y~C~a~n~--~~~~~s~-~~~l~V~  182 (290)
T 2o26_X          135 TDLTFVPNPKAGITIKNVKRAYH-RLCVRCAAQRD--GTWLHSD-KFTLKVR  182 (290)
T ss_dssp             TTCEEEEETTTEEEEESCCGGGT-TCEEEEEEEET--TEEEECC-CEEEEEE
T ss_pred             CCCceeeCCCCCEEEecccHHHC-CCEEEEEEEEC--CceEEeE-EEEEEEE
Confidence            35788888999999999999996 8 999999997  4444443 4566665

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.59  E-value=0.00012  Score=45.37  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.|..
T Consensus        61 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~   96 (212)
T 1q0x_L           61 PARFSGSLIGDKAALTITGAQTEDE-AIYFCALWSNN   96 (212)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEECSS
T ss_pred             cccEEEEeeCCEEEEEECCCCccCC-EEEEEEEecCc
Confidence            4688876644   799999999996 99999999864

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=97.59  E-value=0.00011  Score=44.65  Aligned_cols=53  Identities=11%  Similarity=0.111  Sum_probs=39.8

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAV   62 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~   62 (66)
                      .+||.+..   +..|.|.|++.+|. +.|.|++.+....+...-. +.+|.|.+....
T Consensus        60 ~~Rfs~~~~~~~~sL~I~~l~~~Ds-G~Y~C~~~~~~~~~~~fG~-GT~l~V~~~~~~  115 (123)
T 3t0v_A           60 PDRFSGSKSGTSASLAISGLRSEDE-ADYYCLSWDDSLNGWVFGG-GTKVTVLDAASG  115 (123)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTTTEEEEBC-CEEEEECCCC--
T ss_pred             cCCEEEEccCCEEEEEECCCCHHHC-EEEEEEEEcCCCCceEECC-CEEEEEccCCCC
Confidence            46887753   44699999999996 9999999876544555555 889999876543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.59  E-value=0.00017  Score=46.60  Aligned_cols=46  Identities=15%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             eEEEeeccc--EEEeecCCCCCCcceeEEeeccccC---cEEecccceeEEEe
Q psy10521         10 KYVVLSSGD--LYVFNATPNDGYKSYRCRTVNKITG---ESQASVFQTRLSIT   57 (66)
Q Consensus        10 ry~ilpsGe--L~I~nv~~~D~~~~Y~C~~~~~lTg---e~~~S~~~~~l~v~   57 (66)
                      ||.+...+.  |.|.||+.+|+ +.|.|++.+...|   +..... +.+|.|.
T Consensus        65 R~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~-~t~l~V~  115 (253)
T 3to4_D           65 DYLATRVTDTELRLQVANMSQG-RTLYCTSSADHWTNTGQLYFGE-GSKLTVL  115 (253)
T ss_dssp             EEEEECCSSSCCEEEEESCSSC-EEEEEEEECSCCSTTCCEEECC-CEEEEEE
T ss_pred             cEEEEeCCCCeEEEccCChhhC-eEEEEEEecCCCCcccceEECC-CEEEEEe
Confidence            888876655  99999999996 9999999866432   233333 4566665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=97.58  E-value=9.5e-06  Score=47.70  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=39.0

Q ss_pred             CCeEEEe--e-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccccccc
Q psy10521          8 GGKYVVL--S-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYSY   65 (66)
Q Consensus         8 ~~ry~il--p-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~~~   65 (66)
                      .+||.+.  .     ...|.|.+|+.+|..+.|.|.+.|.+ |+..  . ..+|.|.++..+.|.
T Consensus        60 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~-G~~~--~-~~~l~V~~~~~~~ps  120 (122)
T 2cry_A           60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF-GSDT--E-IIRLKEQGSEMSGPS  120 (122)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSS-CEEE--E-EECCCCSCSSCCCCC
T ss_pred             CCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCC-CeEE--E-EEEEEECCCCCCCCC
Confidence            3567762  2     22799999999994489999999987 4433  2 457888887766663

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.74  E-value=9.5e-06  Score=47.53  Aligned_cols=49  Identities=16%  Similarity=0.351  Sum_probs=36.0

Q ss_pred             cCCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..+||.+..     ++.|.|.||+.+|. +.|.|++.+....+....+ +.+|.|.
T Consensus        56 ~~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~fg~-gT~l~V~  109 (110)
T 1u3h_A           56 EDGRFTIFFNKREKKLSLHIADSQPGDS-ATYFCAASANSGTYQRFGT-GTKLQVV  109 (110)
Confidence            357888753     35799999999996 9999999986544444444 6677663

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.58  E-value=9.6e-05  Score=47.67  Aligned_cols=50  Identities=10%  Similarity=0.035  Sum_probs=36.3

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeeccc---------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKI---------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~l---------Tge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++     .|.|.||+.+|. +.|.|++.|..         .+....+. ..+|.|.++
T Consensus        71 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~~~~~~-~~~l~V~~~  134 (256)
T 3juy_B           71 QDRVTFTADTSANTAYMELRSLRSADT-AVYYCARVGEWGWDDSPYDNYYMDVWGK-GTTVIVSSG  134 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCCCCTTCCTTTTCSCCEECC-CEEEEECSC
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccC-EEEEEeEEeccccccccccccceeEECC-ceEEeecCC
Confidence            4689887544     399999999996 99999999871         12333343 567777764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=0.00011  Score=41.86  Aligned_cols=46  Identities=13%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+++.+. .+.|.|.+|+.+|. +.|.|.+.|..-. .  +. ...|.|.+.
T Consensus        46 ~~~~~~~-~~~L~i~~v~~~D~-G~Y~C~a~n~~g~-~--~~-~~~l~V~~~   91 (99)
T 2cr3_A           46 SNRTRIT-GEEVEVQDSVPADS-GLYACVTSSPSGS-D--TT-YFSVNVSDA   91 (99)
T ss_dssp             CSSEEEC-SSEEEETTCCTTTC-EEEEEEEEETTEE-E--EE-EEEECBCSC
T ss_pred             CCcEEEE-CCEEEEccCCHHHC-EEEEEEEEeCCce-E--EE-EEEEEEecC
Confidence            4566665 78999999999996 9999999997543 2  22 346666653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.58  E-value=0.0001  Score=50.89  Aligned_cols=49  Identities=12%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     ++.|.|.+|+.+|+ |.|+|++.|........+. ..+|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~-~~~l~V~~  118 (444)
T 1igt_B           65 KGRFTISRDNAKNTLYLQMSRLKSEDT-AMYYCARHGGYYAMDYWGQ-GTTVTVSS  118 (444)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECSSSCEEEEBC-CEEEEECS
T ss_pred             CCceEEEEeCCCCeEEEEECCCCHHHC-EEEEEEEecCCcccccccC-cEEEEecC
Confidence            46888875     35899999999996 9999999987533223333 45666663

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=97.58  E-value=0.00013  Score=46.47  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     ++.|.|.||+.+|. +.|.|++.|..
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~  102 (225)
T 1op3_H           65 KGRFTVSRDDLEDFVYLQMHKMRVEDT-AIYYCARKGSD  102 (225)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECCS
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhC-EEEEEEEecCC
Confidence            47888875     36899999999996 99999999864

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.58  E-value=7.9e-05  Score=46.70  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.|.|+||+.+|+ +.|+|.+.|+. |+  .+. .+.|.|.+
T Consensus        74 ~~~L~I~~v~~~Da-G~Y~Cevsn~~-g~--~~~-~~~L~V~~  111 (126)
T 2dav_A           74 TFEMQIIKAKDNFA-GNYRCEVTYKD-KF--DSC-SFDLEVHE  111 (126)
T ss_dssp             EEEEEECSCCTTSC-EEEEEEEECSS-CE--EEE-CCEEEEEC
T ss_pred             eEEEEEccCCcccC-EEEEEEEEeCC-Cc--EEE-EEEEEEEe
Confidence            47899999999997 99999999995 43  333 56888887

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.57  E-value=0.00012  Score=45.75  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.|...
T Consensus        60 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~   96 (216)
T 2xzc_L           60 PDRFSGSKSGTSATLGITGLQTGDE-ADYYCGTWDSSL   96 (216)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEECTTS
T ss_pred             CCceEEeccCCEEEEEECCCCcccC-EEEEEEEEeCCC
Confidence            4688887655   799999999996 999999998754

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=97.57  E-value=0.00016  Score=40.31  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=27.9

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .|.|.+|+.+|. |.|.|.+.|.. |+...   .+.|.|.+
T Consensus        63 ~L~i~~v~~~D~-G~Y~C~a~N~~-g~~~~---~~~l~V~~   98 (99)
T 1g1c_A           63 ELVIRDVTGEDS-ASIMVKAINIA-GETSS---HAFLLVQA   98 (99)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEETT-EEEEE---EEEEEEEC
T ss_pred             EEEECCCCcCCC-EEEEEEEEECC-CcEEE---EEEEEEec
Confidence            699999999996 99999999985 44332   44777754

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.57  E-value=0.00019  Score=46.47  Aligned_cols=50  Identities=10%  Similarity=-0.049  Sum_probs=36.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc------CcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT------GESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT------ge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..+     +.|.|.+|+.+|+ +.|.|++.|..-      +....+. ...|.|.++
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~g~~~~~~~~~~~~~-~~~l~V~~~  124 (257)
T 1f3r_B           64 KSRLSISRDTSKNQVFLKMNSLQTDDT-GTYYCTRDLYGGYPLGFWYFDFWGP-GTMVTVSSG  124 (257)
T ss_dssp             STTEEEEEETTTTEEEEEEESCCTTCC-EEEEEEEESSSSCCSSCCCEEEECC-CEEEEECSS
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcccC-EEEEEEEcccccCccccccccccCC-ceEEEEEeC
Confidence            578888753     4899999999996 999999998741      2223333 557777653

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.57  E-value=5.7e-05  Score=45.19  Aligned_cols=49  Identities=18%  Similarity=0.131  Sum_probs=35.3

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..   ++.|.|.||+.+|. +.|.|++.+..- ...... +.+|.|.++
T Consensus        59 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~-~~~fg~-gt~L~V~~~  110 (120)
T 1mqk_L           59 PSRFSGSGSGTQFSLKINSLLPEDF-GSYYCQHHYGTP-PLTFGG-GTKLEIKRE  110 (120)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSS-SCCBCC-CEEEEEC--
T ss_pred             CceEEEeccCCEEEEEECCCCHHHC-EEEEEEEEeCCC-ceEECC-CeEEEEecC
Confidence            57888864   34799999999996 999999997520 223343 789999754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.56  E-value=0.00011  Score=51.57  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=36.2

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++|+.+.++|.|.|.+|+.+|+ |.|.|++.|..- +.  +. .+.+.|.++
T Consensus       388 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G-~~--~~-~~~~~v~~~  434 (440)
T 3zyj_A          388 KVRIAVLSDGTLNFTNVTVQDT-GMYTCMVSNSVG-NT--TA-SATLNVTGT  434 (440)
T ss_dssp             CSSEEECTTCCEEESSCCSTTC-EEEEEEEECSSC-EE--EE-EEEEEEC--
T ss_pred             CceEEEccCCeEEEccCChhhC-EEEEEEEEcCCC-cE--EE-EEEEEEecc
Confidence            4688999999999999999996 999999999853 32  22 457777653

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.56  E-value=7.1e-05  Score=48.56  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=36.8

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..+   +.|.|.+|+.+|. +.|.|.+.|..   ..... +.+|.|.++
T Consensus       197 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~---~~~g~-gt~l~V~~~  246 (257)
T 1f3r_B          197 PSRFSGSGSGTDYTLTISSLQPEDV-ATYFCYQYNNG---YTFGA-GTKLELKAA  246 (257)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGC-SEEEEEEESSS---EEECC-CCEECCSSS
T ss_pred             CCCEEEecCCCEEEEEECCCChhhC-EEEEEEEeCCC---CeECC-CEEEEEeCC
Confidence            467877543   3699999999996 99999999975   44554 789988763

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.56  E-value=6.9e-05  Score=48.34  Aligned_cols=49  Identities=16%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++.     |.|.+|+.+|. +.|.|++.+... +....+. ..+|.|.+
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~-~~~L~V~~  121 (256)
T 3umt_A           67 KGKAILTVDKSSSTAYLELRSLTSEDS-AVYYCARDDRYPAWFAYWGQ-GTTVTVSS  121 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECCSTTCCSCEECC-CEEEEECC
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccC-EEEEEEEccCCCccccEECC-CEEEEEcC
Confidence            47888876554     99999999996 999999998732 1222333 56777765

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.56  E-value=0.00011  Score=46.92  Aligned_cols=48  Identities=19%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCc--EEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGE--SQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge--~~~S~~~~~l~v~   57 (66)
                      .+||.+..     .+.|.|.+|+.+|. +.|.|.+.|...|+  ....+ +.+|.|+
T Consensus       192 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~~~~~~~~fg~-gt~L~V~  246 (247)
T 1svz_A          192 KGRFAFSLDTSTSTAFLQINNLKNEDT-ATYFCVRDRHDYGEIFTYWGQ-GTTVTVS  246 (247)
T ss_dssp             SSSEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEEGGGTEEEEEECC-CEEEEEC
T ss_pred             cCcEEEEEecCCCEEEEEECCCChhHC-EEEEEEEeccCCccceeEEcC-CEEEEEe
Confidence            57888754     35899999999996 99999999965443  23344 7788885

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.56  E-value=4.4e-05  Score=46.54  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+|.|.|.+++.+|. +.|.|.+.|.+ |+..  . ...|.|.+|
T Consensus       173 ~~~~~L~i~~~~~~d~-G~Y~C~a~N~~-g~~~--~-~~~l~V~~P  213 (214)
T 3jz7_A          173 MTSPVISVKNASSEYS-GTYSCTVQNRV-GSDQ--C-MLRLDVVPP  213 (214)
T ss_dssp             TTSSEEEECSCCGGGC-EEEEEEEECSS-CEEE--E-EEEECCBCC
T ss_pred             cCCCEEEEecCCHHHC-EEEEEEEEcCC-CcEE--E-EEEEEEeCC
Confidence            3478999999999995 99999999997 4432  2 447777665

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.56  E-value=6.4e-05  Score=41.85  Aligned_cols=46  Identities=26%  Similarity=0.402  Sum_probs=34.3

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+++|.+..++   .|.|.+++.+|. +.|.|.+.|..-..   +. ...|.|+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~---~~-~~~l~V~   97 (99)
T 3puc_A           49 QGGKYKLSEDKGGFFLEIHKTDTSDS-GLYTCTVKNSAGSV---SS-SCKLTIK   97 (99)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEEE
T ss_pred             CCCCEEEEEeCCEEEEEECCCCcccC-EEEEEEEEeCCCcE---eE-EEEEEEE
Confidence            35788887765   599999999995 99999999985332   22 4466664

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=97.56  E-value=9.7e-05  Score=48.07  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+..
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~  102 (253)
T 3liz_H           65 KGRFTISRDNAKNTLFLQMSSLKSEDT-AMYYCTRDPAG  102 (253)
T ss_dssp             TTTCEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECCBT
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEecCC
Confidence            47888876554     99999999996 99999998864

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=0.00018  Score=40.37  Aligned_cols=27  Identities=26%  Similarity=0.508  Sum_probs=23.7

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ..+.|.|.+++.+|. +.|.|.+.|..-
T Consensus        62 ~~~~L~i~~v~~~D~-G~Y~C~a~N~~g   88 (99)
T 2yr3_A           62 GVAELHIQDALPEDH-GTYTCLAENALG   88 (99)
T ss_dssp             TEEEEEECSCCTTCC-BCEEEEEECSSC
T ss_pred             CeEEEEECCCChhhC-EEEEEEEEECCC
Confidence            456899999999995 999999999874

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.55  E-value=6.2e-05  Score=44.35  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             CCeEEEeecc--------------cEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521          8 GGKYVVLSSG--------------DLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus         8 ~~ry~ilpsG--------------eL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      .+|+.+..++              .|.|.||+.+|+ +.|.|++.+.-.|..
T Consensus        70 ~~R~~~~~~~~~~g~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~g~~  120 (128)
T 3r0n_A           70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDE-GNYTCEFATFPKGSV  120 (128)
T ss_dssp             GGGEEESSCBCCCSTTCCCBCSBCCEEECSCCGGGC-EEEEEEEEEETTEEE
T ss_pred             CCcEEEeccccccccccccCCCCeEEEEccCCchhC-eEEEEEEEeCCCCCc
Confidence            4677776654              899999999996 999999876545543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.55  E-value=5.6e-05  Score=42.65  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .++|+.+. .+.|.|.+++.+|. |.|.|.+.|..-
T Consensus        51 ~~~~~~~~-~~~L~i~~~~~~D~-G~Y~C~a~n~~g   84 (95)
T 2ckn_A           51 ESNRTRIT-GEEVEVRDSIPADS-GLYACVTSSPSG   84 (95)
T ss_dssp             CCSSEEEC-SSEEEESSCCGGGS-EEEEEEEEETTE
T ss_pred             CCCCEEEe-CCEEEECCCChHHC-EEEEEEeccCCC
Confidence            35576664 88999999999996 999999999753

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=97.54  E-value=0.00014  Score=46.32  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..+     ..|.|.||+.+|+ +.|.|++.+..
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~  102 (223)
T 1dee_B           65 KGRFTISRDNSKNTLYLQMNSLRAEDT-AVYYCAKVKFY  102 (223)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEESSS
T ss_pred             CCeEEEEecCCCCEEEEEECCCCHHHC-EEEEEEEeccc
Confidence            478888753     4799999999996 99999998863

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.54  E-value=9e-05  Score=47.69  Aligned_cols=48  Identities=25%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++   .|.|.+|+.+|+ +.|.|++.|...  ...+. ..+|.|.++
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~~--~~~~~-~~~L~V~~~  109 (242)
T 2znx_A           59 PSRFSGSGSGTDFTLSINSVETEDF-GMYFCQQSNSXP--YTFGG-GTKLEITGG  109 (242)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSS--CEECC-CEEEEEC--
T ss_pred             CCCEEEecCCCEEEEEECCCChHHC-EEEEEeEecCCc--eEECC-CEEEEEcCC
Confidence            5688887543   699999999996 999999998742  22233 456666553

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.54  E-value=0.00017  Score=44.72  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=33.5

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..   ++.|.|.||+.+|+ |.|.|++.|.... ...+. ...|.|.
T Consensus        56 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~-~~~~~-~~~l~V~  105 (211)
T 3tv3_L           56 PDRFSGSKSGNTASLTVSGLQTDDE-AVYYCGSLVGNWD-VIFGG-GTKLTVL  105 (211)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGC-EEEEEEEEETTTE-EEECC-CEEEEEC
T ss_pred             cCcEEEEccCCEEEEEECCCChhHC-EEEEEEEecCCCc-eeECC-CceEEEe
Confidence            46787654   34699999999996 9999999987542 22333 4566665

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.54  E-value=0.00011  Score=45.41  Aligned_cols=50  Identities=20%  Similarity=0.191  Sum_probs=34.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+..     ++.|.|.+|+.+|+ +.|.|++.+.-.......+....|.|.+
T Consensus        68 ~~r~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  122 (214)
T 2zg1_A           68 QGRFRLLGDVQKKNCSLSIGDARMEDT-GSYFFRVERGRDVKYSYQQNKLNLEVTA  122 (214)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEEETTTEEEECCSSCEEEEEEC
T ss_pred             cCceEEeccCCCCeEEEEEccCCHhhC-ceEEEEEEcCCCceeeecCCceEEEEec
Confidence            47888865     34799999999996 9999999986421111112255677765

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=97.54  E-value=0.00013  Score=42.19  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..     ++.|.|.||+.+|+ |.|.|++.+...... .+. ...|.|.++
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~-~~~-~v~L~V~~~  120 (124)
T 1neu_A           67 KERIQWVGDPSWKDGSIVIHNLDYSDN-GTFTCDVKNPPDIVG-KTS-QVTLYVFEK  120 (124)
T ss_dssp             TTCEEECCBGGGTBCCEEECSCCGGGC-EEEEEEEEC----CC-EEE-EEEEEEEC-
T ss_pred             cCcEEEecCCcCCeEEEEEccCChhhC-EEEEEEEEcCCCCcC-cEe-eEEEEEecC
Confidence            56887753     47899999999996 999999998654321 122 447777653

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.53  E-value=0.00017  Score=45.23  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             CCeEEEeec---c--cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS---G--DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps---G--eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|+.+..+   |  .|.|.||+.+|+ +.|.|++.|..
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  104 (220)
T 1pz5_B           67 KGRFTISRDDSKSSVYLQMNNLRAEDT-GIYYCTRGGAV  104 (220)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTT
T ss_pred             CCcEEEEEeCCCCeEEEEEccCCHHHC-EEEEEEEecCC
Confidence            478888642   2  899999999996 99999999864

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.53  E-value=0.0001  Score=43.05  Aligned_cols=45  Identities=22%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+.  ......+ +.+|.|
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~V  111 (111)
T 2qhl_A           64 DSRFSMTVNDQKFDLNIIGTREDDG-GEYFCGEVEG--NTIKFTS-GTRLQF  111 (111)
T ss_dssp             CTTEEEEESSSBEEEEESSCCGGGC-EEEEEEEEET--TEEEEEE-EEEEEC
T ss_pred             CCcEEEEEcCCeEEEEECCCChhHC-EEEEEEEccC--CeeEEcC-ceEEeC
Confidence            5788886543   699999999996 9999999874  2333343 556654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.53  E-value=7.5e-05  Score=46.25  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=32.5

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEE--ecccceeEEEe
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ--ASVFQTRLSIT   57 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~--~S~~~~~l~v~   57 (66)
                      ..++.|.|.+|+.+|+ |.|.|++.|.......  .|. +..|.|+
T Consensus       152 ~~~~~L~i~~v~~~d~-G~Y~C~a~n~~~~~~~s~~S~-~~~l~V~  195 (196)
T 3p2t_A          152 QHQAEFPMSPVTSVHG-GTYRCFSSHGFSHYLLSHPSD-PLELIVS  195 (196)
T ss_dssp             EEEEEEEECSCCGGGC-EEEEEEEECGGGTTEECCCCC-CEEEEEC
T ss_pred             CcceEEEeCCCcccCC-CeEEEEEEcCCCCcccCCCCC-CEEEEeC
Confidence            3578999999999996 9999999999864322  233 6677775

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.53  E-value=0.00013  Score=43.46  Aligned_cols=48  Identities=23%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|..+..      ++.|.|.||+.+|+ +.|.|++.+.-.|..  +. ...|.|-|.
T Consensus        65 ~~R~~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~t~~~g~~--~~-~~~L~VlE~  118 (123)
T 4gjt_B           65 EGRVEQPPPPRNPLDGSVLLRNAVQADE-GEYECRVSTFPAGSF--QA-RLRLRVLEH  118 (123)
T ss_dssp             TTTEECCCSSCCTTBCCEEEESCCSSSC-SEEEEEEEESSSCEE--EE-EEEEEC---
T ss_pred             eeEEEEecCCCcCCEEEEEECCCChHHC-EEEEEEEEECCCCeE--Ee-EEEEEEEEC
Confidence            35665543      34699999999996 999999875433432  22 457777664

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.53  E-value=0.00014  Score=42.50  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=34.1

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||.+..  +   ..|.|.||+.+|. +.|.|++.+.  ++..... +.+|.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~V  114 (115)
T 2atp_B           65 KKRNIILESSDSRRPFLSIMNVKPEDS-DFYFCATVGS--PKMVFGT-GTKLTV  114 (115)
T ss_dssp             TTCCEEEESTTSSSCEEEECSCCGGGC-EEEEEEEECS--SCEEECC-CEEEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEeEccC--CcccCCC-CEEEEE
Confidence            57888864  3   3699999999996 9999999862  4555554 777776

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.52  E-value=0.00014  Score=44.34  Aligned_cols=48  Identities=21%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          9 GKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++|.+. .++.|.|.+++.+|. +.|.|.+.|..-. ...|. ..+|.|.+.
T Consensus       160 ~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~-~~~s~-~~~l~V~~~  208 (212)
T 1f97_A          160 SSFTIDPKSGDLIFDPVTAFDS-GEYYCQAQNGYGT-AMRSE-AAHMDAVEL  208 (212)
T ss_dssp             SCEEECTTTCCEEESSCCGGGC-EEEEEEEECSSSC-CEECC-CEEEEEESS
T ss_pred             ceeEecCCCceEEEEecChhhC-cEEEEEEccccCC-ccccc-eEEEEEEEe
Confidence            456664 488999999999996 9999999999744 33454 678888874

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.52  E-value=0.00015  Score=40.50  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             EEEeecc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         11 YVVLSSG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        11 y~ilpsG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.....|  .|.|.+|+.+|. +.|.|.+.|..- +  .+. ...|.|.+
T Consensus        54 ~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g-~--~~~-~~~l~V~~   98 (100)
T 2kdg_A           54 MIVSEKGLHSLIFEVVRASDA-GAYACVAKNRAG-E--ATF-TVQLDVLA   98 (100)
T ss_dssp             EEEETTTEEEEEESSCCGGGC-EEEEEEEEETTE-E--EEE-EEEEEEEC
T ss_pred             EEEcCCCeEEEEECCCCcccC-EEEEEEEEcCCC-e--EEE-EEEEEEEe
Confidence            3444455  899999999996 999999999863 3  232 45777754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.52  E-value=0.00014  Score=46.68  Aligned_cols=49  Identities=18%  Similarity=0.369  Sum_probs=38.5

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++|.+..+|.|.|.+++.+|. +.|+|++.|...++....  ...|.|..
T Consensus       143 ~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~n~~~~~~~~~--~~~~~v~~  191 (291)
T 2wim_A          143 SDNRFAMLANNNLQILNINKSDE-GIYRCEGRVEARGEIDFR--DIIVIVNV  191 (291)
T ss_dssp             CCSSEEECTTSCEEETTCCGGGC-EEEEEEEEETTTTEEEEE--EEEEEEEB
T ss_pred             CCceEEEccCCCEEEEecchhhC-EEEEEEEEECCCCeeEEe--eEEEEecc
Confidence            36789999999999999999996 999999999987765433  23455543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=97.51  E-value=9.4e-05  Score=46.15  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|+.+...     +.|.|.||+.+|+ |.|.|++.|..
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  101 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDT-ATYYCANWDGD  101 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEETTSS
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccC-EEEEEEEecCc
Confidence            578888752     2899999999996 99999999863

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.51  E-value=0.00012  Score=47.08  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++.     |.|.+|+.+|+ +.|.|++.|..  ....+. ..+|.|.+
T Consensus        66 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~--~~~~~~-~~~l~V~~  117 (253)
T 3uzq_A           66 QGKATITADTSSNTAYLHLSSLTSGDT-AVYYCSRGWEG--FAYWGQ-GTLVTVSA  117 (253)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECSSS--CCEECC-CEEEEECS
T ss_pred             CCcEEEEeecCCCeEEEEeCCCCcccC-EEEEEEEeeCC--ccEECC-CcEEEEec
Confidence            47888876554     99999999996 99999999842  122232 55677664

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.50  E-value=7.6e-05  Score=48.41  Aligned_cols=50  Identities=20%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             CCeEEEe-----ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL-----SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il-----psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.     .++.|.|.||+.+|. +.|.|++.|...+.........+|.|.+
T Consensus        62 ~~r~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           62 VNGFEAEFSKSDSSFHLRKASVHRSDS-AVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             STTCEEEEETTTTEEEEEESSCCGGGC-SEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEECCCCcccC-EEEEEEEecCCCccceEECCCeEEEEeC
Confidence            5677773     244699999999996 9999999987654333222356777765

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.50  E-value=0.00018  Score=40.69  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             eEEE-eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         10 KYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        10 ry~i-lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      ++.+ ..++.|.|.+++.+|. |.|.|.+.|..-.. .  . ...|.|.++.
T Consensus        56 ~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~~-~--~-~~~l~V~~~~  102 (108)
T 3kvq_A           56 GIVLKDGNRNLTIRRVRKEDE-GLYTCQACSVLGCA-K--V-EAFFIIEGAQ  102 (108)
T ss_dssp             TEEEETTTTEEEECSCCGGGC-EEEEEEEC----CE-E--E-EEEEEEEC--
T ss_pred             CeEEeCCCcEEEEeecCcccC-EEEEEEEEeCCCce-E--E-EEEEEEeCCC
Confidence            3444 3468899999999996 99999999985432 2  2 3578887643

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.50  E-value=0.00014  Score=46.51  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeeccc--------cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNKI--------TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~l--------Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..+      +.|.|.||+.+|+ +.|.|++.+..        +++..... +.+|.|..
T Consensus        56 ~~R~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~p~~~~~~~~~~~~-~t~L~V~~  118 (207)
T 1ypz_E           56 NGRLKSAFDSKERRYSTLHIRDAQLEDS-GTYFCAADTWHISEGYELGTDKLVFGQ-GTQVTVEP  118 (207)
T ss_dssp             ETTEEEEECTTTCSEEEEEECSCCGGGC-EEEEEEEECBCCCTTCCCCCCCCEECC-CEEEEEEC
T ss_pred             CCCEEEEeccCCCCEEEEEECCCCHHHC-EEEEEEEecCCcccccccccceeeecC-ccEEEEcc
Confidence            578888754      5799999999996 99999999863        23333333 56788874

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.50  E-value=9.4e-05  Score=43.78  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             CCeEEEeec--------ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS--------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps--------GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+..+        ..|.|.||+.+|. +.|.|++...-.+ ....+ +.+|.|.+
T Consensus        64 ~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~~~-~~fg~-GT~l~V~~  119 (120)
T 3noi_A           64 RGRLAPLASSRFLHDHQAELHIRDVRGHDA-SIYVCRVEVLGLG-VGTGN-GTRLVVEK  119 (120)
T ss_dssp             TTCEECCCHHHHHTTCBCCEEESSCCGGGC-EEEEEEEEETTTE-EEECC-CEEEEEEC
T ss_pred             CCcEEeecccccccCCcEEEEEecCChhhC-EEEEEEEEECCcc-ceeCC-CeEEEEec
Confidence            578877543        3799999999996 9999999754322 33344 78888865

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.49  E-value=4.2e-05  Score=47.52  Aligned_cols=42  Identities=19%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ...+.|.|.+|+.+|+ |.|.|.+.|....-...|. +..|.|+
T Consensus       146 ~~~~~L~I~~v~~~d~-G~Y~C~a~n~~~~~s~~S~-~~~l~V~  187 (188)
T 1oll_A          146 KVQAEFPLGPVTTAHR-GTYRCFGSYNNHAWSFPSE-PVKLLVT  187 (188)
T ss_dssp             SSEEEEEEEECCGGGC-EEEEEECEEETTEECCCCC-CEEEEEE
T ss_pred             CceeEEEECCCCcCCC-cEEEEEEEcCCCcCCCCCC-cEEEEec
Confidence            3578999999999996 9999999987622122344 7778776

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.49  E-value=8.7e-05  Score=48.74  Aligned_cols=49  Identities=12%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++     .|.|.+|+.+|. +.|.|++.|..+  +.....+ +.+|.|.+
T Consensus       199 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~~~~~~~~fg~-gt~l~V~~  254 (276)
T 3auv_A          199 KGRFTISADTSKNTAYLQMNSLRAEDT-AVYYCARFVFFLPYAMDYWGQ-GTLVTVSS  254 (276)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECSSTTCSCCCBCC-CEEEEEC-
T ss_pred             CCcEEEEecCCCcEEEEEECCCChhHC-EEEEEEEEcCcCCcCceEECC-CEEEEEcc
Confidence            5688887543     799999999996 999999999742  3333344 67888864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.49  E-value=0.00011  Score=51.51  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=34.1

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..+|+.+.++|.|.|.+|+.+|+ |.|.|.|.|.. |+.  +. .+.|.|.
T Consensus       431 ~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~-g~~--~~-~~~l~V~  476 (477)
T 2id5_A          431 SNGRLTVFPDGTLEVRYAQVQDN-GTYLCIAANAG-GND--SM-PAHLHVR  476 (477)
T ss_dssp             ----CEECTTSCEEESSCCSTTC-EEEEEEEEETT-EEE--EE-EEEEEEE
T ss_pred             CCceEEeCCCCEEEEeeCChHHC-EEEEEEEEeCC-CcE--EE-EEEEEEe
Confidence            35688888999999999999996 99999999984 442  32 4467765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=97.48  E-value=6.1e-05  Score=43.65  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .|.|.|.+++.+|. |.|.|.+.|.+ |+...   ...|.|.++
T Consensus        61 ~~~L~I~~v~~~D~-G~Y~C~A~N~~-G~~~~---~~~l~V~~~   99 (103)
T 1wwb_X           61 HGCLQLDNPTHMNN-GDYTLIAKNEY-GKDEK---QISAHFMGW   99 (103)
T ss_dssp             EEEEEEESCCGGGC-EEEEEEEECSS-CEEEE---EEEECCSCC
T ss_pred             EEEEEECCCCcccC-EEEEEEEEeCC-CcEeE---EEEEEECCC
Confidence            34499999999996 99999999986 44332   346666553

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.48  E-value=9.6e-05  Score=46.72  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.|....  ..+. ..+|.|..
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~~~--~~~~-~~~l~V~~  112 (240)
T 1moe_A           63 PVRFSGTGSRTDFTLIIDPVEADDV-ATYYCQQTNEDPY--TFGG-GTKLEIKG  112 (240)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSC--CBCC-CEEEEECC
T ss_pred             CccEEEEecCCeEEEEEcCCChhhC-EEEEEEEccCCce--eecC-CEEEEEec
Confidence            4688887655   699999999996 9999999987421  1222 44666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.48  E-value=0.00011  Score=51.84  Aligned_cols=47  Identities=23%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++|+.+..+|.|.|.+|+.+|. |.|.|.|.|..- +...   .+.|.|.+.
T Consensus       398 ~~~~~~~~~g~L~i~~v~~~D~-G~Y~C~a~N~~G-~~~~---~~~l~v~~~  444 (452)
T 3zyi_A          398 HPRISVLNDGTLNFSHVLLSDT-GVYTCMVTNVAG-NSNA---SAYLNVSTA  444 (452)
T ss_dssp             CSSCEECTTSCEECSSCCTTCC-EEEEEEEECSSC-EEEE---EEEEEC---
T ss_pred             CCCEEECCCCeEEEeecCHHHC-EEEEEEEEcCCC-cEEE---EEEEEEEcc
Confidence            4588888999999999999996 999999999853 3222   346666653

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.48  E-value=0.00014  Score=46.66  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      .+.++.+..+|.|.|.+++.+|. +.|.|++.|...++..
T Consensus       145 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~~~~~~  183 (291)
T 1qz1_A          145 KDVRFIVLSNNYLQIRGIKKTDE-GTYRCEGRILARGEIN  183 (291)
T ss_dssp             CCTTEEECTTSCEEETTCCGGGC-EEEEEEEEEGGGTEEE
T ss_pred             CCceEEEccCCcEEEccCccccC-eEEEEEEEecCCCcee
Confidence            35688889999999999999996 9999999998877654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.47  E-value=0.00013  Score=51.20  Aligned_cols=48  Identities=17%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+...|   .|.|.||+.+|+ |.|+|++.|...++...+. ..+|.|.
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~~~~~~~-~~~l~V~  108 (523)
T 2rcj_C           58 PTRFSGSKSGTSASLAISGLEAEDE-SDYYCASWNSSDNSYVFGT-GTKVTVL  108 (523)
T ss_pred             CCcEEEecCCCEEEEEECCCChhhC-EEEEEEEccCCCccccccC-ceEEEec
Confidence            4688865544   699999999996 9999999997644433333 4566664

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.47  E-value=0.00013  Score=46.57  Aligned_cols=48  Identities=21%  Similarity=0.230  Sum_probs=33.1

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++   .|.|.+|+.+|+ +.|.|++.|...  ...+. ..+|.|..+
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~~--~~~~~-~~~l~V~~~  114 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDL-GIYYCFQGSHFP--PTFGG-GTKLEIKGG  114 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSS--CEECC-CEEEEEC--
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHC-EEEEEEEccCCc--cEECC-CEEEEEECC
Confidence            4688886544   699999999996 999999998632  12222 446666553

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.47  E-value=0.00023  Score=45.17  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=32.8

Q ss_pred             CCeEEEeec----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+...    +.|.|.||+.+|+ |.|.|++.+........+. ..+|.|.
T Consensus        62 ~~r~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~-~~~l~V~  113 (240)
T 3q5y_A           62 PSRFSVQQFDDYHSEMNMSALELEDS-AMYFCASSLRWGDEQYFGP-GTRLTVL  113 (240)
T ss_dssp             CTTEEEEECTTSCEEEEECSCCGGGC-EEEEEEEESSTTBCCEECC-CEEEEEE
T ss_pred             CCeEEEEeCCCCEEEEEECcCChhHC-EEEEEEEccCCCcceEEcC-CEEEEEe
Confidence            368888753    3599999999996 9999999843222223333 4455555

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=97.47  E-value=0.00019  Score=47.63  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     ++.|.|.||+.+|+ +.|.|++.+........+. ..+|.|..
T Consensus        71 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~-~~~L~V~~  124 (261)
T 2xqy_G           71 KDKVTLTVDKSSSTVYIQLSSLTSEDS-AVYYCGRLGYVYGFDYWGQ-GTTLTVSS  124 (261)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTTSSEEEECC-CEEEEECS
T ss_pred             CCcEEEEecCCCCEEEEEEcCCCcccC-eEEEEEEecCCCcceEECC-CEEEEEcc
Confidence            57888875     35899999999996 9999999985311212222 44566653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.46  E-value=0.00014  Score=44.37  Aligned_cols=41  Identities=27%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++.|.|.+|+.+|. |.|.|.+.|..- . ..|. ...|.|.+|
T Consensus       135 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~~-~-~~s~-~~~l~V~~~  175 (175)
T 1fnl_A          135 HNSDFHIPKATLKDS-GSYFCRGLVGSK-N-VSSE-TVNITITQA  175 (175)
T ss_dssp             ECCCEEESSCCGGGC-EEEEEEEEETTE-E-EECC-CEEEEEECC
T ss_pred             CCCEEEEcccChhhC-eEEEEEEEcCCC-C-ccCc-cEEEEEeCC
Confidence            578999999999996 999999999732 2 3344 678888765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.46  E-value=8.9e-05  Score=45.72  Aligned_cols=46  Identities=11%  Similarity=0.182  Sum_probs=33.8

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+..+      +.|.|.||+.+|+ |.|+|++.|.....   +. ...|.|..
T Consensus        52 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~---~~-~~~l~V~~  103 (202)
T 3bp6_B           52 SERATLLEEQLPLGKALFHIPSVQVRDS-GQYRCLVICGAAWD---YK-YLTVKVKA  103 (202)
T ss_dssp             CSSCEECGGGGGGTEEEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEEEB
T ss_pred             CCceEEeeccccCCeeEEEECCCCHHHC-cEEEEEEEeCCCcc---eE-EEEEEecC
Confidence            467777664      7899999999996 99999998865322   22 44666654

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=97.46  E-value=0.00017  Score=45.43  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=27.6

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  103 (221)
T 3m8o_H           67 RGRLTISRDDSKNTAFLQMNSLKSDDT-AMYYCVIRGD  103 (221)
T ss_dssp             TTSEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEESC
T ss_pred             cccEEEEecCCCCEEEEEECCCCHHHC-EEEEEEEECC
Confidence            47898876553     99999999996 9999999875

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.46  E-value=5.7e-05  Score=43.79  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=28.4

Q ss_pred             ccCCeEEEeecc---cEEEeecCCCCCCcceeEEeecc
Q psy10521          6 FVGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         6 ~~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ..+++|.+...|   .|.|.+++.+|+ |.|.|.+.|.
T Consensus        47 ~~~~~~~i~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~   83 (91)
T 2lvc_A           47 EESDFVVLENEGPHRRLVLPATQPSDG-GEFQCVAGDE   83 (91)
T ss_dssp             CCCSSCEEEEETTEEEEEESSCCGGGC-SEEEEECSSC
T ss_pred             eeeeeeeEEecCCeEEEEeCCCChhhc-EEEEEEEcce
Confidence            346788888877   599999999996 9999999664

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.45  E-value=0.00042  Score=42.25  Aligned_cols=35  Identities=23%  Similarity=0.588  Sum_probs=29.4

Q ss_pred             cCCeEEEeecc---cEEEeecC-CCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNAT-PNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~-~~D~~~~Y~C~~~~~lT   42 (66)
                      .+++|.+...+   .|.|.+++ .+|. +.|.|.+.|.+-
T Consensus       140 ~~~~~~~~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~N~~g  178 (190)
T 2wv3_A          140 SSGRFFIINKENYTELNIVNLQITEDP-GEYECNATNSIG  178 (190)
T ss_dssp             TTSCEEEEECSSEEEEEECSCCTTTSC-EEEEEEEECSSC
T ss_pred             CCCeEEEecCCCeeEEEEEeccccCCC-EEEEEEEEecCC
Confidence            56788887755   59999999 6995 999999999864

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.45  E-value=0.00019  Score=47.88  Aligned_cols=50  Identities=18%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecc--ccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK--ITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~--lTge~~~S~~~~~l~v~ep   59 (66)
                      +.+|... ++.|.|.+|+.+|+ |.|.|.+.|.  ..+.....+....|.|.++
T Consensus       174 ~~~~~~~-~~~L~I~~v~~~D~-G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~  225 (329)
T 3oq3_B          174 GTKYSQS-GQNLIIHNPELEDS-GRYDCYVHYDDVRIKNDIVVSRCKILTVIPS  225 (329)
T ss_dssp             SSSEEEE-TTEEEECSCCGGGC-EEEEEEEEECCTTSSSCEEEEEEEEEEEECC
T ss_pred             CceEecC-CCEEEEeecChhhC-EEEEEEEEecccCCCceeEEEeeEEEEEECC
Confidence            4566666 89999999999996 9999999997  5444433332566777653

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.45  E-value=0.00022  Score=41.95  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEe
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.  ++   ..|.|.||+.+|. +.|.|++.+..   ..+..... +.+|.|+
T Consensus        60 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~~fg~-GT~l~V~  115 (116)
T 1fo0_A           60 VGHYSLNFQKPKSSIGLIITATQIEDS-AVYFCAMRGDYGGSGNKLIFGT-GTLLSVK  115 (116)
T ss_dssp             ETTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECCCTTCSSCEEECC-CEEEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEEcCcCCCCceEEECC-CcEEEEe
Confidence            4788884  32   3599999999996 99999998732   34444444 7788875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.45  E-value=0.00019  Score=44.06  Aligned_cols=47  Identities=13%  Similarity=0.049  Sum_probs=34.8

Q ss_pred             CCeEEEeec-c---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-G---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++|.+... |   .|.|.+++.+|. |.|.|.+.|.+- ..  +. ...|.|..|
T Consensus       161 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~g-~~--~~-~~~l~V~~P  211 (212)
T 2r15_A          161 TDHCNLKFEAGRTAYFTINGVSTADS-GKYGLVVKNKYG-SE--TS-DFTVSVFIP  211 (212)
T ss_dssp             CSSEEEEEETTTEEEEEESSCCGGGC-EEEEEEEEETTE-EE--EE-EEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEEcCcchHHC-eEEEEEEEcCCC-cE--EE-EEEEEEEcc
Confidence            456777654 4   899999999996 999999999874 32  22 446777665

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.44  E-value=0.0002  Score=44.36  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+...   +.|.|.||+.+|+ |.|.|++.|..
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~   94 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDI-GSYYCQQYYNY   94 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSSS
T ss_pred             CCcEEEeccCCEEEEEECCCCcccC-EEEEEecccCC
Confidence            568887743   3899999999996 99999998864

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=97.44  E-value=0.00018  Score=42.13  Aligned_cols=47  Identities=13%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+.-+     ..|.|.|++.+|. +.|.|++.+.. ++..... +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~-~~~~fg~-GT~l~V~  116 (117)
T 2yc1_A           65 KGRFTISRDDAKKTLSLQMNSLRAEDT-AVYYCARGGVG-SFDTWGQ-GTMVTVS  116 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEETT-EEEEECC-CEEEEEC
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEeCC-CceEECC-CEEEEEc
Confidence            468888632     3699999999996 99999998752 2334443 7788875

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=97.44  E-value=0.00014  Score=45.99  Aligned_cols=33  Identities=15%  Similarity=0.112  Sum_probs=27.5

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..  +   ..|.|.||+.+|+ +.|.|++.|..
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  101 (215)
T 1c5d_H           64 KSRLSINRDTSKSQVFLKMNSLQTEDT-AIYFCTREDGW  101 (215)
T ss_dssp             GGGEEEEEETTTTEEEEEESSCCGGGC-EEEEEEECCSS
T ss_pred             cCcEEEEeeCCCceEEEEECCCCcccC-EEEEEEEecCC
Confidence            47888874  2   3799999999996 99999999863

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.43  E-value=0.00029  Score=47.00  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=39.2

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+.++.+..+|.|.|.+|+.+|..+.|+|++.|........+. ...|.|.
T Consensus       161 ~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~-~~~l~v~  210 (404)
T 3p3y_A          161 QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKN-PFTLKVL  210 (404)
T ss_dssp             CCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECC-CBCEEEE
T ss_pred             CCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccC-ceeEEEe
Confidence            3568888899999999999999558999999998877655544 4455553

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.43  E-value=0.00013  Score=42.86  Aligned_cols=50  Identities=24%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             CeEEEee--cccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEecc
Q psy10521          9 GKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~ep   59 (66)
                      +|+.+..  ++.|.|.||+.+|. +.|.|++.+.-- ++.-.......|.|+.+
T Consensus        82 ~R~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g~  134 (135)
T 1xt5_A           82 GRASVANLAAPTLRLTHVHPQDG-GRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  134 (135)
T ss_dssp             TTEEESCTTSCCEEECSCCGGGC-EEEEEEEECSSCCSGGGEEEEEEEEEEETT
T ss_pred             CcEEEecCCCCeEEECCCChhhC-cEEEEEEEcCCccccccccceeEEEEEecC
Confidence            7887754  47899999999996 999999997521 12111112457777654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.43  E-value=0.00016  Score=45.98  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             CeEEEeecc----cEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +||.+...+    .|.|.||+.+|+ |.|.|++.+.
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~   98 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDS-AVYFCASSFW   98 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGC-EEEEEEEECS
T ss_pred             CCEEEEeccCceEEEEECCCCHhHC-EEEEEEEccC
Confidence            788887633    799999999996 9999999964

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=97.43  E-value=0.00016  Score=42.74  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=35.5

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..+     ..|.|.|++.+|. +.|.|++.+...++..... +.+|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~fg~-GT~l~V~~  118 (120)
T 1mfa_H           65 RAKTKLTAVTSTTTAYMELSSLTSEDS-AVYYCTRGGHGYYGDYWGQ-GASLTVSS  118 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEETTEEEEEECC-CEEEEEC-
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEecCCCceeEECC-CEEEEEEc
Confidence            468888632     3699999999996 9999999876322344444 77888865

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=97.43  E-value=0.00028  Score=45.93  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  124 (256)
T 3sob_H           88 KGRFTISADTSKNTAYLQMNSLRAEDT-AVYYCARGSG  124 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEESS
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCcccC-EEEEEEEecC
Confidence            47888876544     99999999996 9999999864

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=97.43  E-value=0.00051  Score=42.67  Aligned_cols=50  Identities=22%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..++   .|.|.+++.+|. +.|.|++.+...++..... +.+|.|.+.
T Consensus        68 ~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~fg~-GT~L~V~~~  120 (134)
T 3kg5_A           68 KGRMEESQNESLATLTIQGIRFEDN-GIYFCQQKCNNTSEVYQGC-GTELRVMGF  120 (134)
T ss_dssp             TTTEEEEECSSEEEEEECSCCTTTC-EEEEEEEECTTTCCEEECC-CEEEEEECC
T ss_pred             CCeEEEEccCCEEEEEECCCCcCcC-EEEEEEEEcCCCCceEECC-CEEEEEecC
Confidence            4678775543   599999999996 9999999876334555555 889999863

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=97.43  E-value=0.00041  Score=43.01  Aligned_cols=49  Identities=20%  Similarity=0.197  Sum_probs=36.6

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +..|.|.|++.+|. +.|.|++.+..   ........ +.+|.|.+
T Consensus        60 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fg~-GT~L~V~~  116 (142)
T 2ol3_A           60 VGHYSLNFQKPKSSIGLIITATQIEDS-AVYFCAMRGDYGGSGNKLIFGT-GTLLSVKP  116 (142)
T ss_dssp             ETTEEECCBGGGTBCCEEECSCCTTTC-EEEEEEEECSSSSCSSCEEECC-CEEEEEEC
T ss_pred             CCCEEEEecCCCCEEEEEECCCChhhC-EEEEEEEEcCcCCcccccEECC-CEEEEEec
Confidence            4788883  3   33699999999996 99999998742   33444444 78999875

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=97.42  E-value=0.00016  Score=40.36  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=30.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+++.+|. +.|.|++.|... . ..|. ...|.|.+
T Consensus        49 ~~~L~i~~v~~~d~-G~Y~C~a~n~~g-~-~~s~-~~~l~V~~   87 (91)
T 3bfo_A           49 KKLYMVPYVDLEHQ-GTYWCHVYNDRD-S-QDSK-KVEIIIDE   87 (91)
T ss_dssp             SSEEEESSCCGGGC-EEEEEEEECSSC-E-EECC-CEEEEEC-
T ss_pred             CCeEEECCCCHHhC-EEEEEEEEcCCC-C-EEee-eEEEEEeh
Confidence            56799999999996 999999999875 2 2233 66888765

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=97.41  E-value=8.8e-05  Score=41.93  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     ++.|.|.||+.+|+ |.|.|++.+.-
T Consensus        58 ~~r~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~   95 (109)
T 2oyp_A           58 SSRYQLKGDLNKGDVSLIIKNVTLDDH-GTYCCRIQFPG   95 (109)
T ss_dssp             CTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEECCSS
T ss_pred             cceEEEccCccCCcEeEEEccCCChhC-eEEEEEEEcCC
Confidence            46776643     36899999999996 99999999863

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=97.41  E-value=0.00025  Score=43.82  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+..++   .|.|.||+.+|. +.|.|++.+..  ...... +.+|.|.+..+
T Consensus        66 ~~Rf~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~--~~~fg~-GT~L~V~~~~~  118 (135)
T 1p4b_L           66 PARFSGSLIGDKAALTITGAQTEDE-AIYFCALWYSN--HWVFGG-GTKLTVLGGGG  118 (135)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGC-EEEEEEEECSS--CEEECC-CEEEEEC----
T ss_pred             CCCEEEEcCCCEEEEEECCCChhHC-EEEEEEEecCC--CCEECC-CEEEEEEcCCC
Confidence            4688876433   699999999996 99999998753  344444 88999986543

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.41  E-value=0.00021  Score=41.85  Aligned_cols=48  Identities=21%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecccc---C----cEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKIT---G----ESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lT---g----e~~~S~~~~~l~v~   57 (66)
                      ++||.+..     +..|.|.||+.+|. +.|.|++.+...   .    +...-+ +.+|.|+
T Consensus        52 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~fg~-GT~l~V~  111 (111)
T 2ywz_A           52 GGRYDETVDKGSKSFSLRISDLRVEDS-GTYKCQADYSPSCYSYPSLESAVEGA-GTVLTVK  111 (111)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEECTTTTCSSSCCEEEECC-CEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEECCCChhcC-EEEEEEEEcCCccceecCchheEEcC-ceEEEeC
Confidence            46787642     45799999999996 999999998432   1    344343 7788774

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.41  E-value=0.00016  Score=45.43  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=27.9

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..+     +.|.|+||+.+|+ |.|.|++.|..
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  104 (222)
T 1q9r_B           67 KGRFTISRDNSQSILYLQMNTLRAEDS-ATYYCARDHDG  104 (222)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCCS
T ss_pred             CCceEEEEECCCCeEEEEECcCCcccC-eEEEEEEeccC
Confidence            478888753     4899999999996 99999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.41  E-value=0.00019  Score=44.41  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +||.+...|   .|.|.+|+.+|+ |.|.|++.|...
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~   95 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDF-GMYFCQQSNSWP   95 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSS
T ss_pred             ccEEEEcCCCEEEEEECCCChhhC-EEEEEeeecCCc
Confidence            688887654   799999999996 999999998753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.41  E-value=0.00035  Score=44.73  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.++.+.++|.|.|.+++.+|. +.|+|++.|.  +....+. ...|.|.+
T Consensus       134 ~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~~~--~~~~~~~-~~~l~V~~  181 (289)
T 3ejj_X          134 RKTVYFFSPWRGFIIRKAKVLDS-NTYVCKTMVN--GRESTST-GIWLKVNR  181 (289)
T ss_dssp             TTCCEEEETTTEEEESSCCGGGC-EEEEEEEEET--TEEEECC-CEEEEEES
T ss_pred             CCccEEECCCCCEEEeecccccC-EEEEEEEEeC--CCccccc-cEEEEEEE
Confidence            35688888999999999999996 9999999953  2223333 55666663

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.40  E-value=0.00017  Score=46.57  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +..|.|.||+.+|. +.|.|++.+........+. ..+|.|.++
T Consensus        78 ~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~  119 (259)
T 3omz_A           78 NLRMILRNLIENDS-GVYYCATWDQNYYKKLFGS-GTSLVVTDK  119 (259)
T ss_dssp             CCEEEESSCCGGGC-EEEEEEEECTTSSCEEECC-CEEEEEEC-
T ss_pred             eEEEEECCCCcccC-EEEEEEEeeCCccccEECC-CCEEEEecC
Confidence            34599999999996 9999999987654455554 667877764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.39  E-value=0.00024  Score=47.31  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..+   +.|.|.+|+.+|. +.|.|.+.|  .++....+ +.+|.|....
T Consensus       223 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~--~~~~~fg~-gt~l~v~~~~  274 (291)
T 2gki_A          223 PDRFTGSGSGTDFTLTISSVQAEDL-AVYYCKQSY--YHMYTFGS-GTKLEIKHHH  274 (291)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEE--TTEEEECC-CEEEEEECC-
T ss_pred             CCCEEEEecCCEEEEEECCCCHHHC-EEEEEEEcc--CCceEEcC-CEEEEEEeeE
Confidence            467777543   3699999999996 999999998  45666666 8899998654

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=97.39  E-value=0.00041  Score=44.93  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..    ++.|.|.||+.+|+ +.|.|++.+.
T Consensus        63 ~~R~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~   98 (252)
T 1oga_E           63 AEGYSVSREKKESFPLTVTSAQKNPT-AFYLCASSSR   98 (252)
T ss_dssp             CTTEEECCSSTTBCCEEECSCCSCCC-EEEEEEEESS
T ss_pred             CCcEEEEecCCCEEEEEECcCChhhC-EEEEEEEecC
Confidence            47888863    46899999999996 9999999986

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.39  E-value=0.00017  Score=44.71  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=30.9

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEe-cccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQA-SVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~-S~~~~~l~v~   57 (66)
                      .+.|.|.+|+.+|+ |.|.|.+.|........ .+....|.|+
T Consensus       156 ~~~L~i~~v~~~D~-G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          156 RAIFSVGPVSPSRR-WWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEEECCCCTTSC-EEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             eeEEEecccCcccC-eEEEEEEEeCCCCccccCcCceEEEEec
Confidence            37999999999996 99999999987644322 2236677665

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=97.39  E-value=0.00025  Score=42.89  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.++.+..+|   .|.|.+++.+|. +.|.|.+.|..-
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g  183 (194)
T 2a38_A          146 SSLDFQISQEGDLYSLLIAEAYPEDS-GTYSVNATNSVG  183 (194)
T ss_dssp             CSSSEEEEEETTEEEEEEEEECGGGC-EEEEEEEEETTE
T ss_pred             CCCcEEEEEcCCEEEEEECCCChhcC-eEEEEEEEeCCC
Confidence            35678887777   599999999996 999999999873

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.39  E-value=0.00023  Score=45.89  Aligned_cols=50  Identities=20%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc--ccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK--ITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~--lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..     ++.|.|.||+.+|. +.|.|++.+.  -.++...-+ +.+|.|.+.
T Consensus       195 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~fg~-GT~l~v~~~  251 (259)
T 3omz_A          195 SGRYSVNFKKAAKSVALTISALQLEDS-AKYFCALGESLTRADKLIFGK-GTRVTVEPR  251 (259)
T ss_dssp             ETTEEECCBGGGTBCCEEESSCCGGGC-SEEEEEEESCSSTTCCCEECC-CEEEEEEC-
T ss_pred             CCeEEEEEcCcCCEEEEEECCCChhHC-EEEEEEEeCccCCCCceEECC-CCEEEEeeC
Confidence            46787763     24599999999996 9999999864  246666665 889999863

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=97.39  E-value=0.00019  Score=39.98  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ++.|.|.+|+.+|. |.|.|++.|..- .. .|. .+.|.|
T Consensus        75 ~~~L~I~~v~~~D~-G~Y~C~a~n~~g-~~-~s~-~~~l~V  111 (112)
T 3so5_A           75 TTILRLRNVEFTSE-GXYQCVISNHFG-SS-YSV-XAXLTI  111 (112)
T ss_dssp             EEEEEECSCCGGGC-EEEEEEEEETTE-EE-ECC-CEEEEE
T ss_pred             ceEEEEeccccccC-CeEEEEEEeCCC-cE-EEe-EEEEEe
Confidence            47999999999995 999999999863 21 233 456665

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=97.38  E-value=0.00018  Score=46.13  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  101 (226)
T 3mlr_H           65 EGQVTMSVDKSISTAYLQWTTLQASDT-GKYFCTRLYL  101 (226)
T ss_dssp             BTTBEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEECCCCcccC-EEEEEeEccC
Confidence            36888875544     99999999996 9999999764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.38  E-value=0.00018  Score=44.01  Aligned_cols=47  Identities=21%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             eEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      ++....+|.|.|.+++.+|. +.|.|.+.|.. |.. .+. ...|.|.++.
T Consensus       158 ~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~-g~~-~s~-~~~l~V~~~P  204 (212)
T 2v9r_A          158 ERITIRGGKLMITYTRKSDA-GKYVCVGTNMV-GER-ESE-VAELTVLERP  204 (212)
T ss_dssp             TTEEEETTEEEESSCCGGGC-EEEEEEEEETT-EEE-ECC-CEEEEEEC--
T ss_pred             ceEEccCCeEEEeeCCHhhC-eeEEEEEeccc-Cce-ecc-eEEEEEEeCc
Confidence            34445789999999999996 99999999986 332 232 5688887643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.38  E-value=0.00024  Score=43.19  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=34.4

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..      ++.|.|.+|+.+|+ |.|+|++.|....   .+. ...|.|..+
T Consensus        69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~~~~~~~~---~~~-~~~l~V~~~  121 (214)
T 3jz7_A           69 KGRVHFTSNDVKSGDASINVTNLQLSDI-GTYQCKVKKAPGV---ANK-KFLLTVLVK  121 (214)
T ss_dssp             TTTEEESCSCGGGTBCCEEECSCCGGGC-EEEEEEEEETTEE---EEE-EEEEEEECC
T ss_pred             ccceEEeccCccCCcccEEEccCChhhC-eEEEEEEEeCCCc---ccc-EEEEEEEcC
Confidence            56777765      68899999999996 9999999986431   232 456777653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=97.38  E-value=0.00026  Score=43.29  Aligned_cols=47  Identities=17%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             CCeEEEee--c--ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS--S--GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp--s--GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.+|.+..  .  +.|.|.+|+.+|. +.|.|.+.|.+-.   .+. ...|.|..+
T Consensus        85 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~---~~~-~~~l~V~~~  135 (154)
T 1fhg_A           85 SRHFQIDYDEEGNCSLTISEVCGDDD-AKYTCKAVNSLGE---ATC-TAELLVETM  135 (154)
T ss_dssp             SSSEEEEECTTCEEEEEESSCCGGGC-EEEEEEEEETTEE---EEE-EEEEEEECC
T ss_pred             CCcEEEEECCCCeEEEEECCCChhcC-EEEEEEEEECCCe---EEE-EEEEEEeCc
Confidence            45777753  3  3899999999995 9999999998643   222 457777754

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=97.38  E-value=0.00027  Score=41.55  Aligned_cols=47  Identities=13%  Similarity=0.109  Sum_probs=34.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     +..|.|.|++.+|. +.|.|++.+. .++..... +.+|.|+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~-~~~~~fg~-GT~l~V~  115 (116)
T 1a2y_B           64 KSRLSISKDNSKSQVFLKMNSLHTDDT-ARYYCARERD-YRLDYWGQ-GTTLTVS  115 (116)
T ss_dssp             GGGEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEESS-SSEEEECC-CEEEEEC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCHHHC-EEEEEEEecC-CCceEECC-CEEEEEe
Confidence            36888753     23699999999996 9999999875 23444444 7788875

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.38  E-value=0.00018  Score=48.35  Aligned_cols=45  Identities=13%  Similarity=0.182  Sum_probs=32.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     +.|.|.||+.+|+ |.|.|++.|..   ...+. ..+|.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~---~~~~~-~~~l~V~  114 (344)
T 1za6_B           65 KGKATLTADTSASTAYVELSSLRSEDT-AVYFCTRSLNM---AYWGQ-GTLVTVS  114 (344)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEETTTT---CEECC-CEEEEEC
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccC-EEEEEEEecCc---ceecC-cEEEEEe
Confidence            478888753     4799999999996 99999999832   12222 4466665

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.37  E-value=0.00031  Score=41.23  Aligned_cols=31  Identities=16%  Similarity=0.327  Sum_probs=25.5

Q ss_pred             CeEEEeecc--cEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVLSSG--DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~ilpsG--eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +||.+..++  .|.|.||+.+|. +.|.|++.+.
T Consensus        64 ~Rf~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~   96 (112)
T 1fo0_B           64 ADYLATRVTDTELRLQVANMSQG-RTLYCTCSAD   96 (112)
T ss_dssp             EEEEEEEEETTEEEEEEESCCSC-EEEEEEEESS
T ss_pred             CCEEEEcCCCCeEEEcCCCHhHC-EEEEEEEEcC
Confidence            788875322  799999999996 9999999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.37  E-value=0.00022  Score=46.50  Aligned_cols=49  Identities=14%  Similarity=0.055  Sum_probs=35.8

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+||.+..   .+.|.|.+|+.+|. +.|.|++.+-  +....++ +.+|.|.++.
T Consensus       184 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~--~~~~fg~-gt~l~V~~~~  235 (256)
T 1nqb_A          184 PDRFSGSGSGTDFTLKISRVEAEDL-GVYYCFQGSH--VPYTFGG-GTKLEIKRAA  235 (256)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEECC--
T ss_pred             CCcEEEEccCCEEEEEECCCChHHC-EEEEEEEccC--CceEECC-CEEEEEECCC
Confidence            45776653   34699999999996 9999999983  4455565 7788887543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.37  E-value=0.00023  Score=45.72  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=36.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.+.  ++....+ +.+|.|..
T Consensus       200 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~--~~~~fg~-gt~l~v~~  249 (257)
T 3gkz_A          200 PARFSGSGSGTSYSLTISSMEAEDA-ASYFCHQWSS--FPFTFGS-GTKLEIKR  249 (257)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEECC
T ss_pred             CCCEEEecCCCEEEEEECCCChHHC-EEEEEEEccC--CceEEcC-CEEEEEEe
Confidence            3677776543   499999999996 9999999874  4555665 88998875

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.36  E-value=0.00024  Score=42.42  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccC---cEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITG---ESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg---e~~~S~~~~~l~v~e   58 (66)
                      +..|.|.||+.+|. +.|.|++.+.-..   +..... +.+|.|.+
T Consensus        73 ~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~fg~-GT~L~V~~  116 (127)
T 2jju_A           73 DFSISISNITPADA-GTYYCVKFRKGSPDDVEFKSGA-GTELSVRA  116 (127)
T ss_dssp             BCCEEECSCCGGGC-EEEEEEEEECCSSSCEEEEECC-CEEEEEEC
T ss_pred             EEEEEECCCCHHHC-EEEEEEEEcCCCCccceEEeCC-CeEEEEee
Confidence            56899999999996 9999999985321   333444 78999975

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=97.36  E-value=0.00026  Score=41.59  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..  +   -.|.|.|++.+|. +.|.|++.+.--....... ..+|.|+
T Consensus        62 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~-~i~L~V~  114 (114)
T 1u9k_A           62 MGKFTLKHDPSEAMLQVQMTDLQVTDS-GLYRCVIYHPPNDPVVLFH-PVRLVVT  114 (114)
T ss_dssp             ETTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTTSCCEECSC-CEEEEEC
T ss_pred             CCcEEEEecCcCCEEEEEECCCChHHC-EEEEEEEecCCCCceeeec-eEEEEEC
Confidence            37888753  2   2599999999996 9999999986433333333 6677764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.36  E-value=0.00023  Score=44.17  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=28.1

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..++   .|.|.+|+.+|+ |.|.|++.|..
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~   93 (210)
T 1lk3_L           58 PARFSGSGSGTDFTLTIDPVEADDT-AIYFCQQSWNG   93 (210)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSS
T ss_pred             cccEEEEecCCEEEEEECCCCHHHC-eEEEEEEEcCC
Confidence            4688887654   899999999996 99999999865

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.36  E-value=0.00022  Score=46.44  Aligned_cols=46  Identities=20%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     .+.|.|.+|+.+|. +.|.|.+.+.  ++....+ +.+|.|+
T Consensus       218 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~--~~~~fg~-Gt~L~V~  268 (268)
T 1x9q_A          218 KGRFTISRDDSKSSVYLQMNNLRVEDT-GIYYCTGASY--GMEYLGQ-GTSVTVS  268 (268)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEET--TEEEECC-CEEEEEC
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEccC--CccEECC-CEEEEeC
Confidence            57888864     25799999999996 9999999874  4555555 8888874

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.36  E-value=0.00018  Score=44.50  Aligned_cols=46  Identities=15%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|..+..+      +.|.|.||+.+|+ |.|.|++.|  -|..  +. ...|.|..|
T Consensus        65 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~--~~~~--~~-~~~l~V~~~  116 (222)
T 3sbw_C           65 RQRARLLKDQLSLGNAALQITDVKLQDA-GVYRCMISY--GGAD--YK-RITVKVNAP  116 (222)
T ss_dssp             SSSEEECHHHHTTTEEEEEESSCCGGGC-EEEEEEEES--SSEE--EE-EEEEEEEBC
T ss_pred             cCceEEccccccCCEEEEEEcCcccccC-eEEEEEEEe--CCCc--ee-EEEEEEECC
Confidence            367777655      4899999999996 999999998  2322  22 346666643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=97.36  E-value=0.0004  Score=44.87  Aligned_cols=48  Identities=13%  Similarity=0.050  Sum_probs=35.8

Q ss_pred             cCCeEEEeec-c---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilps-G---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+++|.+..+ |   .|.|.+|+.+|. |.|.|.+.|..- ..  +. ...|.|..|
T Consensus       265 ~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~g-~~--~~-~~~l~V~~P  316 (317)
T 2y25_A          265 SDDHCNLKFEAGRTAYFTINGVSTADS-GKYGLVVKNKYG-SE--TS-DFTVSVFIP  316 (317)
T ss_dssp             CCSSEEECCBTTTEEEEEEBSCCSTTC-EEEEEEEEETTE-EE--EE-EEEEEEECC
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEeCCC-eE--EE-EEEEEEEcC
Confidence            3567777665 7   899999999996 999999999964 32  22 446776654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.36  E-value=9.3e-05  Score=45.90  Aligned_cols=42  Identities=26%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.+|+.+|+ |.|+|++.|..+|....|. ...|.|.+
T Consensus        56 ~~~~L~i~~v~~~D~-G~Y~C~a~n~~~g~~~~s~-~~~l~V~~   97 (198)
T 1ugn_A           56 KKGQFPIPSITWEHT-GRYRCYYGSDTAGRSESSD-PLELVVTG   97 (198)
T ss_dssp             TTTEEEESSCCGGGC-EEEEEEEEETTTEECCCCC-CEEEEEEC
T ss_pred             cccEEEECCCCHHHC-eEEEEEEECCCCCcccCCc-cEEEEEcc
Confidence            468899999999996 9999999998643222233 55677765

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=97.35  E-value=0.00024  Score=42.13  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecc---ccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNK---ITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~---lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     ..|.|.||+.+|. +.|.|++.+.   -++....-. +.+|.|+
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fg~-GT~l~V~  122 (123)
T 2p45_B           67 KGRMTISRDKGKNTVYLQMDSLKPEDT-ATYYCAAGGYELRDRTYGQWGQ-GTQVTVS  122 (123)
T ss_dssp             BTTEEEECCTTSSEEEEEESSCCGGGC-EEEEEEESSCTTCGGGCCEECC-CEEEEEE
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEecCCCccccceeCC-CEEEEec
Confidence            368888632     3699999999996 9999999874   234444444 7788875

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=97.35  E-value=0.00032  Score=46.62  Aligned_cols=32  Identities=13%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        64 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  100 (263)
T 3iu4_H           64 KSRLSISKDNSKSQVFLKMNSLQTDDT-AMYYCARSGV  100 (263)
T ss_dssp             TTCEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEEC
T ss_pred             CCCEEEEecCCCCEEEEEECCCCHHHC-EEEEEEEEeC
Confidence            47898876544     99999999996 9999999875

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.35  E-value=0.0002  Score=41.65  Aligned_cols=48  Identities=25%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc---cC-cEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI---TG-ESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l---Tg-e~~~S~~~~~l~v~   57 (66)
                      ++||.+..     +..|.|.||+.+|. +.|.|++.+..   ++ +....+ +.+|.|+
T Consensus        52 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~~~fg~-GT~l~V~  108 (108)
T 2coq_A           52 GGRYSETVDEGSNSASLTIRDLRVEDS-GTYKCKAYRRCAFNTGVGYKEGA-GTVLTVK  108 (108)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEEEESSCSCSCCEECC-CEEEEEC
T ss_pred             CCceEEEEcCCCCEEEEEECCCCcccC-EEEEEEEEeCCCCCCCceeeeCC-cEEEEeC
Confidence            46787631     45799999999996 99999999832   11 334443 7788774

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=97.34  E-value=0.00028  Score=41.99  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=34.8

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..+     ..|.|.||+.+|. +.|.|++.+.- ...........|.|+++
T Consensus        74 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~-~~~~~~~~~~~l~V~~~  128 (132)
T 1nko_A           74 RDRFHLLGDPQTKNCTLSIRDARMSDA-GRYFFRMEKGN-IKWNYKYDQLSVNVTAL  128 (132)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEEETT-EEEECTTSCEEEEEECC
T ss_pred             CccEEEeCCCCCCceEEEEcccCcccC-eeEEEEEEcCC-CcccccCCceEEEeccc
Confidence            478988642     3799999999996 99999998642 11122123567777764

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=97.34  E-value=0.00028  Score=41.85  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc-----cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI-----TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l-----Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+..     ++....-. +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~fg~-GT~l~V~  122 (123)
T 2wzp_D           65 KGRFTVSRDSGKNTVYLQMNSLKPEDT-AIYYCAARSGGFSSNRELYDGWGQ-GTQVTVS  122 (123)
T ss_dssp             TTTEEEEEETTEEEEEEEECSCCGGGC-EEEEEEEEESSBCSCGGGCSEECC-CEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEecCcccccccccceECC-CEEEEEc
Confidence            46888863     24799999999996 99999998752     23444443 7788875

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.34  E-value=0.00024  Score=46.88  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             CeEEEeec-ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilps-GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|.+... +.|.|.+|+.+|. +.|+|++.|...+.....+....|.|.+
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          171 EKFLSVRGTTHLLVHDVALEDA-GYYRCVLTFAHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             SSEEECTTSSEEEESSCCGGGC-EEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred             ceeEEcCCcceEEEcccCHhhC-eEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence            57777653 6899999999996 9999999999876543222356777764

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.34  E-value=0.00027  Score=44.54  Aligned_cols=50  Identities=18%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+..+   ..|.|.||+.+|. +.|.|++.+..  ...... +.+|.|.++..
T Consensus        74 ~~Rfs~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~--~~~fg~-GT~L~V~~~~~  126 (146)
T 2yc1_B           74 PARFTGSGSGTDFTLTISSLEPEDF-AIYYCQQYRYS--PRTFGQ-GTKVEIKRAAA  126 (146)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSSS--SCEECC-CEEEEEC----
T ss_pred             CCCeEEecCCCEEEEEECCCCHHHC-EEEEEEEecCC--CCeECC-CEEEEEeCCcc
Confidence            468887643   3699999999996 99999998752  334444 77888876543

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=97.34  E-value=0.00041  Score=41.59  Aligned_cols=48  Identities=25%  Similarity=0.254  Sum_probs=35.9

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-    +-.|.|.||+.+|. +.|.|++.+.  +.....+ +.+|.|.+.
T Consensus        61 ~~R~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~--~~~~fg~-GT~l~v~~~  112 (121)
T 2oi9_C           61 PDGYKASRPSQENFSLTLESATPSQT-SVYFCASGGG--GTLYFGA-GTRLSVLSS  112 (121)
T ss_dssp             CTTEEEECCSSSEEEEEESSCCGGGC-EEEEEEEESS--SCEEECC-CEEEEEEC-
T ss_pred             CCCeEEEcCCCCEEEEEECCCCHHHC-EEEEEEEccC--CccEECC-CeEEEEech
Confidence            46887752    23599999999996 9999999875  3455554 889998763

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=97.33  E-value=0.00019  Score=41.78  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..|.|.|.+++.+|. |.|.|.+.|.+ |+
T Consensus        63 ~~~~L~i~~~~~~d~-G~Y~C~a~N~~-G~   90 (118)
T 1wwc_A           63 SEGCLLFNKPTHYNN-GNYTLIAKNPL-GT   90 (118)
T ss_dssp             EEEEEEEESCCGGGC-EEEEEEEEETT-EE
T ss_pred             ccEEEEECCCChhcC-EEEEEEEECCC-Ce
Confidence            467899999999996 99999999987 44

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.33  E-value=0.00035  Score=45.87  Aligned_cols=41  Identities=12%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +...+.|.|.+|+.+|. |.|+|.+.|.+ |..  +. ...|.|.+
T Consensus       264 ~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~-G~~--~~-~~~l~V~~  304 (313)
T 4fqp_A          264 VAQGAQLLIRPVDKPIN-TTLICNVTNAL-GAR--QA-ELTVQVKE  304 (313)
T ss_dssp             EEETTEEEECCCSSCCE-EEEEEEEECSS-CEE--EE-EEEEEEEC
T ss_pred             EEeCCEEEECcCChhhC-EEEEEEEEeCC-CcE--EE-EEEEEEEe
Confidence            34567899999999996 99999999987 543  22 45888876

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.33  E-value=0.00026  Score=44.66  Aligned_cols=49  Identities=22%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEEec
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..    .+.|.|.+|+.+|+ +.|.|++.|...  .....+. ..+|.|.+
T Consensus        60 ~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~g~~~~~~~~~-~~~l~V~~  114 (238)
T 2p1y_A           60 PDGYKASRPSQENFSLILELATPSQT-SVYFCASGDLGQTNERLFFGH-GTKLSVLG  114 (238)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGC-EEEEEEEEC------CEEECC-CEEEEEEC
T ss_pred             cceEEEEccCCceEEEEEecCCcccC-eeEEEEEEeCCCccccceeCC-CeEEEEec
Confidence            46787764    44799999999996 999999998742  1222222 44666654

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=97.33  E-value=0.00035  Score=42.17  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc-ccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK-ITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~-lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-     +..|.|.|++.+|. +.|.|++.+. .+++...-+ +.+|.|+..
T Consensus        64 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~fG~-GT~l~v~~~  119 (124)
T 1yc7_A           64 KGRFTISRDNAKNTVYLQMNSLQREDT-GMYYCQIQCGVRSIREYWGQ-GTQVTVSSH  119 (124)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEECSSSCEEEECC-CEEEEEC--
T ss_pred             CCcEEEEEECCCCEEEEEECCCCHHHC-EEEEEEEEeCCCcccceECC-CEEEEEecc
Confidence            46888863     23699999999996 9999999875 234555555 889998764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.32  E-value=0.00025  Score=45.15  Aligned_cols=48  Identities=23%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+...+   .|.|.+|+.+|+ +.|.|++.|....  ..+. ..+|.|..+
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~~~--~~~~-~~~l~V~~~  112 (250)
T 3esu_F           62 PSRFSGSGSGTDYSLTISNLEQEDI-GTYFCQQGNTLPW--TFGG-GTKLEIRRG  112 (250)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSC--EECC-CEEEEEC--
T ss_pred             CCCEEEeCCCCEEEEEEccCChhhC-EEEEEEEeeCCCc--eECC-CEEEEEECC
Confidence            4688776544   799999999996 9999999986432  2222 446666653

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.32  E-value=0.00029  Score=41.30  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccC--cEEecccceeEEE
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITG--ESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTg--e~~~S~~~~~l~v   56 (66)
                      .+||.+..+   ..|.|.||+.+|. +.|.|++.+...+  .....+ +.+|.|
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-GT~l~V  115 (115)
T 2otu_A           64 PDRFSGSSSGADRYLSISNIQPEDE-AIYICGVGDTIKEQFVYVFGG-GTKVTV  115 (115)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEECCTTSCEEEECC-CEEEEC
T ss_pred             CCCEEEEccCCEEEEEECCCChhHC-EEEEEEEecCCCCcceeEECC-CEEecC
Confidence            468887643   3599999999996 9999999875331  233333 556553

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.32  E-value=0.0003  Score=43.88  Aligned_cols=47  Identities=28%  Similarity=0.445  Sum_probs=34.9

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++.+..+   +.|.|.+++.+|. |.|.|++.|.+ |... | .++.|.|.-
T Consensus       155 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~-G~~~-s-~~a~l~~~~  204 (212)
T 2yd6_A          155 NGRIKQLRSESIGALQIEQSEESDQ-GKYECVATNSA-GTRY-S-APANLYVRG  204 (212)
T ss_dssp             -CCEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETT-EEEE-C-CCEEEEEEC
T ss_pred             CceEEEEecCCeEEEEEcCCCcccC-EEEEEEEECCC-Cccc-c-ccccEEEEe
Confidence            356666654   8999999999995 99999999985 4322 3 367777764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.32  E-value=0.00032  Score=42.36  Aligned_cols=35  Identities=23%  Similarity=0.523  Sum_probs=29.5

Q ss_pred             CCeEEEeeccc-EEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSSGD-LYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilpsGe-L~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ++||.+..+|. |.|.+++.+|. |.|+|++.|....
T Consensus        52 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~   87 (192)
T 2iep_A           52 DTRYSIRENGQLLTILSVEDSDD-GIYCCTANNGVGG   87 (192)
T ss_dssp             CTTEEEEGGGTEEEESSCCGGGC-EEEEEEEECSSSC
T ss_pred             CccEEEcCCccEEEEcCCCcccC-eEEEEEEEcCCCc
Confidence            56888877665 99999999996 9999999987644

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.32  E-value=0.00027  Score=45.40  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..+|   .|.|.||+.+|+ |.|.|++.|..
T Consensus        97 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  132 (252)
T 3bkj_L           97 PDRFSGSGSGTDFTLRISRVEAEDL-GVYYCFQASLV  132 (252)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSBS
T ss_pred             CCceEEEccCCEEEEEECCCCcccC-EEEEEEEEcCC
Confidence            4688887655   799999999996 99999999874

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=97.32  E-value=0.0003  Score=44.80  Aligned_cols=33  Identities=9%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     ++.|.|.||+.+|. +.|.|++.|..
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  103 (228)
T 3bae_H           66 ESRLTISKDTSRDMVFMKITSVDTADT-ATYYCARRGFY  103 (228)
T ss_dssp             GGGEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEEES
T ss_pred             CCcEEEEEcCCCCeEEEEEcCCCcccC-EEEEEEEecCC
Confidence            47888864     36899999999996 99999999863

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=97.31  E-value=0.00011  Score=42.64  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=29.2

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.+|+.+|. |.|.|.+.|..- ...  . ...|.|.+
T Consensus        72 ~~~~L~I~~v~~~Ds-G~Y~C~a~n~~g-~~~--~-~~~l~V~~  110 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQ-GLYTCAASSGLM-TKK--N-STFVRVHE  110 (122)
T ss_dssp             EEEEEEESSCCGGGC-EEEEEEEECSSC-EEE--E-EEEEEEEE
T ss_pred             EEEEEEECCCCcccC-EEEEEEEccCCC-ceE--E-EEEEEEec
Confidence            456899999999996 999999999753 222  2 44666654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.31  E-value=0.00019  Score=45.59  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=26.8

Q ss_pred             CeEEEee----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          9 GKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         9 ~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +||.+..    ++.|.|.||+.+|+ |.|.|++.+..
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  100 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDS-SFYICSARTSG  100 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGC-EEEEEEECCSS
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHC-EEEEEEEecCC
Confidence            7888875    23699999999996 99999998754

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.31  E-value=0.00016  Score=46.65  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=29.9

Q ss_pred             cCCeEEEeecccEEEe---ecCCCCCCcceeEEeeccccCcEE
Q psy10521          7 VGGKYVVLSSGDLYVF---NATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~---nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ..+|+.+.++|.|.|.   +|+.+|. +.|.|.+.|.. |+.+
T Consensus       153 ~~~r~~~~~~g~l~il~i~~v~~~D~-G~YtC~A~N~~-G~a~  193 (203)
T 4fa8_A          153 ANGGVMKEKDGSLSVAVDLSLPKPWH-LPVTCVGKNDK-EEAH  193 (203)
T ss_dssp             ---CCEECTTSCEEEEEEEEECSSCC-CCEEEEEESSS-CEEE
T ss_pred             ccceEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEcCC-CEEE
Confidence            3578899999998874   9999995 99999999995 5543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.31  E-value=0.00026  Score=43.08  Aligned_cols=40  Identities=18%  Similarity=0.196  Sum_probs=31.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++.|.|.+++.+|. |.|.|.+.|...+  ..|. ...|.|.++
T Consensus       133 ~~~L~i~~v~~~d~-G~Y~C~a~n~~~~--~~s~-~~~l~V~~~  172 (176)
T 1f2q_A          133 NHNISITNATVEDS-GTYYCTGKVWQLD--YESE-PLNITVIKA  172 (176)
T ss_dssp             SSEEEESSCCGGGC-EEEEEEEEETTEE--EECC-CEEEEEECS
T ss_pred             CCeEEECCCCcccC-EEEEEEEEeCCcc--eEec-CEEEEEecC
Confidence            67899999999996 9999999997222  3343 678888875

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.31  E-value=0.00029  Score=45.15  Aligned_cols=48  Identities=15%  Similarity=0.205  Sum_probs=35.9

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.++.+.+++.|.|.+++.+|+ +.|+|++.|... . ..+. ...|.|.+
T Consensus       134 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~~-~-~~s~-~~~l~V~~  181 (292)
T 4dkd_C          134 RHTNYSFSPWHGFTIHRAKFIQS-QDYQCSALMGGR-K-VMSI-SIRLKVQK  181 (292)
T ss_dssp             SSCCEECCSSSCCEETTCCGGGC-SEEEEEECSTTS-C-EECC-CEEEEEEC
T ss_pred             cCCcccccCCceEEECCCCHHHC-eEEEEEEEeCCC-c-eeEE-EEEEEEeC
Confidence            35678888889999999999996 999999997632 2 2332 45666664

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.30  E-value=0.00029  Score=41.19  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             ccEEEeecCCCCCCcceeEEeecccc--C--cEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKIT--G--ESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lT--g--e~~~S~~~~~l~v~   57 (66)
                      ..|.|.||+.+|. +.|.|++.+...  +  +....+ +.+|.|.
T Consensus        78 ~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~fg~-GT~L~V~  120 (120)
T 2yz1_A           78 FSIRISNVTPEDA-GTYYCVKFQKGPSEPDTEIQSGG-GTEVYVL  120 (120)
T ss_dssp             CCEEECSCCGGGC-EEEEEEEEECCSSSSCEEEEECC-CEEEEEC
T ss_pred             EEEEECCCCHHHC-EEEEEEEEcCCCCCCcceEEeCC-cEEEEEC
Confidence            5799999999996 999999987531  2  233343 7788773

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.30  E-value=0.00028  Score=44.04  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++||.+..   ++.|.|.||+.+|+ |.|.|++.+..
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  117 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDF-ATYYCQQSYTT  117 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSS
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhC-eEEEEeeccCC
Confidence            56888874   45699999999996 99999998765

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.30  E-value=0.00029  Score=46.29  Aligned_cols=48  Identities=19%  Similarity=0.129  Sum_probs=34.6

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..+   +.|.|.+|+.+|. +.|.|++.+...  ...+. ..+|.|.++
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~--~~~~~-~~~L~V~~~  119 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDL-AVYYCQQYSNYP--WTFGG-GTRLEIKRG  119 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSS--CEECC-CEEEEEECC
T ss_pred             CccEEEecCCCEEEEEECCCCHHHC-EEEEEEEecCCc--cEecC-CEEEEEEcC
Confidence            578888653   4899999999996 999999998641  12232 456776654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.29  E-value=0.00024  Score=43.76  Aligned_cols=42  Identities=14%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEec-ccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS-VFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S-~~~~~l~v~e   58 (66)
                      ++.|.|.||+.+|+ |.|.|++.|........+ .....|.|.+
T Consensus        64 ~~~L~I~~v~~~D~-G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~  106 (201)
T 1dr9_A           64 NLSIVILALRPSDE-GTYECVVLKYEKDAFKREHLAEVTLSVKA  106 (201)
T ss_dssp             TTEEEECSCCGGGC-EEEEEEEEECCTTSCEEEEEEEEEEEEEC
T ss_pred             CcEEEEecccchhC-eEEEEEEEcCCCCccccccccEEEEEEcC
Confidence            57899999999996 999999999764333211 1134555554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.29  E-value=0.00032  Score=46.25  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     ++.|.|.||+.+|. +.|.|++.|..-  .....+. ..+|.|..
T Consensus        91 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~n~~g~~~~~~~~~-~~~L~V~~  146 (282)
T 1qok_A           91 QGKATFTTDTSSNTAYLQLSSLTSEDT-AVYYCNEGTPTGPYYFDYWGQ-GTTVTVSS  146 (282)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECSSSSCCCEEECC-CEEEEEEC
T ss_pred             cCcEEEEEecCCCeEEEEECcCChhhC-EEEEEEeccCCCccceeeeCC-CEEEEEec
Confidence            47888864     25799999999996 999999998752  1223333 45677765

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=97.29  E-value=0.00035  Score=45.12  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        72 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~  108 (239)
T 3tv3_H           72 KSRLTLALDTPKNLVFLKLNSVTAADT-ATYYCARFGG  108 (239)
T ss_dssp             GGGEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEEE
T ss_pred             cCCEEEEEECCCCEEEEEECCCChhhC-EEEEEEEecC
Confidence            47888875443     99999999996 9999999865

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=97.28  E-value=0.00025  Score=42.57  Aligned_cols=52  Identities=12%  Similarity=0.082  Sum_probs=37.0

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc----cCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI----TGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l----Tge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+.-+     ..|.|.||+.+|. +.|.|++.+..    .++..... +.+|.|.....
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~fg~-GT~L~V~~~~~  125 (127)
T 3cx5_J           65 KDRLSITRDTSKNQFFLKLNSVTTEDT-ATYYCARSEYYSVTGYAMDYWGQ-GTTVTVSSAWR  125 (127)
T ss_dssp             TTTBCCEEETTTTEEEEEECSCCGGGC-EEEEEEEEEEETTTEEEEEEECC-CEEEEECSCCC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEeCccccccccceeCC-CEEEEEecccc
Confidence            367776521     3699999999996 99999998752    23344444 78999986443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.27  E-value=0.0002  Score=43.54  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             CeEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|.+. .++.|.|.+++.+|. +.|.|.+.|..-.. ..|. ...|.|.+
T Consensus       162 ~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~-~~s~-~v~l~V~d  209 (209)
T 1nbq_A          162 SSYVLNPTTGELVFDPLSASDT-GEYSCEARNGYGTP-MTSN-AVRMEAVE  209 (209)
T ss_dssp             CCCCCCTTTCCEEESSCCGGGC-CCEEEEEECSSSCC-EECC-CBCCEEEC
T ss_pred             cceEEcCCcceEEEEeccccCC-eEEEEEEeCCcCcc-cccc-cEEEEEeC
Confidence            455554 478999999999996 99999999997544 3343 45666653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.27  E-value=0.00036  Score=42.48  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=33.2

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|+.+.. +.|.|.+|+.+|. |.|+|++.|..- ....+. ...|.|..
T Consensus        57 ~~r~~~~~-~~L~i~~v~~~D~-G~Y~C~~~~~~g-~~~~~~-~~~l~V~~  103 (212)
T 1f97_A           57 ADRVTFSS-SGITFSSVTRKDN-GEYTCMVSEEGG-QNYGEV-SIHLTVLV  103 (212)
T ss_dssp             TTTEEEET-TEEEESCCCGGGC-EEEEEEEEETTS-SSEEEE-EEEEEEEB
T ss_pred             cCcEEeec-eeEEEcccCcccC-eEEEEEEEccCC-CcccEE-EEEEEEEc
Confidence            56676654 9999999999996 999999999743 222222 34555554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.26  E-value=0.00033  Score=45.18  Aligned_cols=46  Identities=24%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++|.+..   ++.|.|.+|+.+|+ |.|.|++.|.. |+  .+. ...|.|..|
T Consensus        58 ~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~-g~--~~~-~~~l~V~~p  106 (203)
T 4fa8_A           58 GFFDIHRSANTFFLVVTAANISHD-GNYLCRMKLGE-TE--VTK-QEHLSVVKP  106 (203)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEETT-EE--EEE-EEEEEEEEE
T ss_pred             ceEEEEEcCCEEEEEEccCCHHHC-eEEEEEEEcCC-Cc--EEE-EEEEEecCC
Confidence            4555543   34599999999996 99999999853 32  232 446666543

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=97.26  E-value=0.00044  Score=40.70  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             CCeEEEee---c--ccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---S--GDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---s--GeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..   .  ..|.|.||+.+|. +.|.|++.+..  .+....-+ +.+|.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~fg~-GT~l~V~  119 (120)
T 1n4x_H           65 KGRFAFSLDTSTSTAFLQINNLKNEDT-ATYFCVRDRHDYGEIFTYWGQ-GTTVTVS  119 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEESSSSSSCEEEECC-CEEEEEC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEccccccccceECC-CEEEEEe
Confidence            46888863   2  3699999999996 99999998752  24444443 7788774

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=97.26  E-value=0.00026  Score=41.89  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--c-CcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--T-GESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--T-ge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+..  + .....-+ +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fg~-GT~l~V~  120 (121)
T 1j05_H           65 QGKATITADTSSNTAYLQLTSLTSEDT-AVYYCAPFGYYVSDYAMAYWGQ-GTSVTVS  120 (121)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEBTTTBCSSCCCCCC-CEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHC-EEEEEEEEcCCCCccccceECC-CEEEEec
Confidence            36888853     23699999999996 99999998762  2 2333333 7788775

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.25  E-value=0.00035  Score=46.09  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..   ++.|.|.+|+.+|. +.|.|++.|-  +....++ +.+|.|.++
T Consensus       219 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~--~~~~fg~-gt~l~V~~~  269 (282)
T 1qok_A          219 PARFSGSGSGTSYSLTISRMEAEDA-ATYYCQQRSS--YPLTFGA-GTKLELKRA  269 (282)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEC--
T ss_pred             cCCeEEecCCCEEEEEEccCChhHC-EEEEEEEeeC--CCceEeC-CEEEEEecc
Confidence            46787754   34699999999996 9999999874  3445565 788888753

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=97.25  E-value=0.00024  Score=50.69  Aligned_cols=47  Identities=21%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+.++|.|.|.||+.+|. |.|.|++.|.......  . ...|.|..
T Consensus       423 ~~r~~~~~~~~L~i~~v~~~D~-G~Y~C~~~n~~~~~~~--~-~~~l~V~~  469 (581)
T 3o3u_N          423 DSVARVLPNGSLFLPAVGIQDE-GIFRCQAMNRNGKETK--S-NYRVRVYQ  469 (581)
T ss_dssp             GGTSEECTTSCEEESSCCGGGC-EEEEEEEECTTSCEEE--E-EEEEEEEB
T ss_pred             CCcEEEcCCceEEEeccccccC-eEEEEEEEcCCCceeE--E-EEEEEEEc
Confidence            5688899999999999999996 9999999987644311  1 34566644

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=97.25  E-value=0.00011  Score=42.95  Aligned_cols=45  Identities=20%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+.-+     ..|.|.|++.+|. +.|.|++.+   +.....+ +.+|.|+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~---~~~~fg~-GT~l~V~  113 (114)
T 1sjv_A           64 KGRFTISRDNAKKTVYLEMNSLEPEDT-AVYYCYTHY---FRSYWGQ-GTQVTVS  113 (114)
T ss_dssp             TTCEEEEECTTTCCEEEEECSCCGGGC-SEEEEEECC---CCCCCCC-CCCCCCC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEeEEc---CcceECC-CEEEEec
Confidence            478888632     3699999999996 999999987   3333333 5566654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.25  E-value=0.00056  Score=39.44  Aligned_cols=47  Identities=26%  Similarity=0.463  Sum_probs=33.5

Q ss_pred             eEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         10 KYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        10 ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      ++.+.++|.+.|..+     +.+|. |.|.|.+.|.+ |+.. + .+++|.+..+.
T Consensus        60 ~~~~~~~~~~~~~~i~~~~v~~~D~-G~Y~C~a~N~~-G~~~-s-~~~~l~~~~~~  111 (117)
T 2v9t_A           60 HRMLLPSGSLFFLRIVHGRKSRPDE-GVYVCVARNYL-GEAV-S-HDASLEVAAAA  111 (117)
T ss_dssp             SEEECTTSCEEESSCCCBTTBCSSC-EEEEEEEEETT-EEEE-C-CCEEEEEC---
T ss_pred             eeEEecCCcEEEEEEEeCCCCcCcC-EEEEEEEEeCc-cceE-e-eeEEEEhhhhh
Confidence            567788999988865     68885 99999999986 4432 3 37788876543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.24  E-value=0.00032  Score=44.54  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=32.0

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++.|.|.+|+.+|. |.|.|.+.|...+  ..|. ...|.|.++.
T Consensus       135 ~~~~L~i~~v~~~D~-G~Y~C~a~n~~~~--~~s~-~~~l~V~~~~  176 (204)
T 3sgj_C          135 HNSDFYIPKATLKDS-GSYFCRGLVGSKN--VSSE-TVQITITQGL  176 (204)
T ss_dssp             ECCCEEESSCCGGGC-EEEEEEEEETTEE--EECC-CEEEEEEC--
T ss_pred             CCceEEECcCCcccC-EEEEEEEEeCCCc--eecC-cEEEEEeCcC
Confidence            478999999999996 9999999996322  3444 6788888743

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.24  E-value=0.00042  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+...|   .|.|.+|+.+|+ |.|.|++.|..
T Consensus       101 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~  136 (254)
T 2c1o_A          101 PDRFTGSGSGTDFTLKISRVEAEDL-GIYYCVQGSHF  136 (254)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSSS
T ss_pred             cceEEEecCCCEEEEEECcCCcccC-EEEEEEEEcCc
Confidence            3688887655   799999999996 99999999874

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=97.24  E-value=0.0004  Score=43.50  Aligned_cols=46  Identities=17%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..   +..|.|.||+.+|. +.|.|++.+..   ..... +.+|.|..
T Consensus        58 ~~Rfs~~~~~~~~sL~I~~l~~~Ds-G~Y~C~~~~~~---~~fg~-gt~L~V~~  106 (143)
T 3u6r_L           58 PARFSGSGSGTDFTLTISNLEPEDF-AVYYCQQRSDW---VTFGG-GTKVEIKA  106 (143)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEECSSB---CEECC-CEEEEEC-
T ss_pred             cCcEeEEccCCEEEEEEccCcccCC-EEEEEEEecCC---CEECC-CEEEEECC
Confidence            46887764   33699999999996 99999998764   33444 78899875

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.23  E-value=0.00027  Score=41.89  Aligned_cols=48  Identities=15%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc----cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI----TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l----Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     ..|.|.||+.+|. +.|.|++.+..    .+...... +.+|.|+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~fg~-GT~L~V~  120 (121)
T 1kxv_C           64 AGRFTISQGNAKNTAYLQMDSLKPDDT-AMYYCKPSLRYGLPGCPIIPWGQ-GTQVTVS  120 (121)
T ss_dssp             BTTEEEEECSSTTEEEEEECSCCGGGC-EEEEEEEEESSCCTTCCCCCCCC-CEEEEEC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCHHHC-EEEEEEEEecCCccccccceECC-CEEEEec
Confidence            468887632     3699999999996 99999998752    23333333 7788875

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.23  E-value=0.00044  Score=44.50  Aligned_cols=50  Identities=24%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             cCCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccC----cEEecccceeEEEec
Q psy10521          7 VGGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITG----ESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg----e~~~S~~~~~l~v~e   58 (66)
                      ..+||.+..     ++.|.|.||+.+|+ +.|.|++.+.-++    +...+. +.+|.|..
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~~~~-~~~L~V~~  123 (242)
T 1hxm_B           65 PSGKFEVDRIPETSTSTLTIHNVEKQDI-ATYYCALWEAQQELGKKIKVFGP-GTKLIITD  123 (242)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEEECSSTTCEEEEECC-CEEEEEES
T ss_pred             cCCeEEEEecCCCcEEEEEECCCCcccC-EEEEEeeecCCccccccceeEcC-cEEEEEcc
Confidence            457888863     34799999999996 9999999986322    223333 56787764

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=97.23  E-value=0.00035  Score=42.68  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc-------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI-------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l-------Tge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+..       ++....-+ +.+|.|.+.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~fG~-GT~l~V~~~  126 (134)
T 1zvh_A           65 KGRFTVSLDNAENTVYLQMNSLKPEDT-ALYYCAAARQGWYIPLNSYGYNYWGQ-GTQVTVSSR  126 (134)
T ss_dssp             BTTBEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEESSCCCTTCGGGEEEECC-CEEEEEC--
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHC-EEEEEEEecCcccccccccCccEECC-CEEEEEccc
Confidence            368887632     2699999999996 99999998752       24444444 789988764

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.23  E-value=0.00031  Score=42.60  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ++.|.|.||+.+|+ |.|.|++.|...+.
T Consensus        82 ~~sL~I~~v~~~D~-G~Y~C~~~~~~~~~  109 (225)
T 4fmk_A           82 DATLAFRGLRVEDE-GNYTCEFATFPNGT  109 (225)
T ss_dssp             BCCEEECSCCGGGC-EEEEEEEEEETTEE
T ss_pred             cEEEEEccCCHHHC-cceEEEEEeCCCcc
Confidence            56799999999996 99999998865443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.23  E-value=0.00022  Score=46.24  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=32.0

Q ss_pred             eEEEee----cccEEEeecCCCCCCcceeEEeeccccC-cEEecccceeEEEec
Q psy10521         10 KYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITG   58 (66)
Q Consensus        10 ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg-e~~~S~~~~~l~v~e   58 (66)
                      ||.+..    ++.|.|.||+.+|+ |.|.|++.+.-.. ....+. ..+|.|.+
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  141 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDS-ALYLCASSLNWSQDTQYFGP-GTRLLVLE  141 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGC-EEEEEEEESCTTCCCCEECC-CEEEEEES
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHC-eEEEEEEecCCCccceEECC-cEEEEEcc
Confidence            777764    55799999999996 9999999864321 122222 44555554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.22  E-value=0.00016  Score=46.81  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             EEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        12 ~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .....+.|.|.+|+.+|. |.|.|.+.|..- ..  +. ...|.|.++
T Consensus       247 ~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~g-~~--~~-~~~l~V~~~  289 (290)
T 2o26_X          247 NYERQETLTISSARVDDS-GVFMCYANNTFG-SA--NV-TTTLKVVEK  289 (290)
T ss_dssp             EEEEEEEEEESSCCSSSC-EEEEEEEECSSC-EE--EE-EEEECC---
T ss_pred             eeEEEEEEEEcCCCcccC-eEEEEEEeCCCC-cE--EE-EEEEEEEeC
Confidence            345578999999999996 999999999874 33  22 446766653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=97.22  E-value=0.00028  Score=45.20  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..    ++.|.|.||+.+|+ |.|.|++.+..
T Consensus        59 ~~R~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~   95 (238)
T 1bec_A           59 PDGYKASRPSQEQFSLILELATPSQT-SVYFCASGGGR   95 (238)
T ss_dssp             CTTCEEECCSSSEEEEEESSCCGGGC-EEEEEEEESCT
T ss_pred             cceEEEEecCCCEEEEEEecCCcccC-EEEEEEEecCC
Confidence            46787753    35799999999996 99999999863

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=97.22  E-value=0.00018  Score=43.47  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             CCeEEEeec------ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSS------GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilps------GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|..+..+      ..|.|.||+.+|+ +.|+|++.|.
T Consensus        69 ~~R~~~~~~~~~~g~~sL~I~~v~~~D~-G~Y~C~v~~~  106 (125)
T 4gos_A           69 RGRTAVFADQVIVGNASLRLKNVQLTDA-GTYKCYIITS  106 (125)
T ss_dssp             TTCEEECTTTGGGTBCCEEESSCCGGGC-EEEEEEEEET
T ss_pred             cceEEEecCCccCCeEEEEECCCChHHC-EEEEEEEEeC
Confidence            356666542      3699999999996 9999999875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.21  E-value=0.00058  Score=41.08  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.++.+..+|   .|.|.+++.+|. +.|+|++.|...
T Consensus        50 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~~   87 (197)
T 3lcy_A           50 QSRKYKMSSDGRTHTLTVMTEEQEDE-GVYTCIATNEVG   87 (197)
T ss_dssp             CCSSEEEEESSSEEEEEEECCSGGGC-EEEEEEEECSSC
T ss_pred             CCccEEEEeCCCEEEEEEecCCccCC-EEEEEEEECCCC
Confidence            35678888777   799999999996 999999998753

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=97.21  E-value=0.00028  Score=46.37  Aligned_cols=50  Identities=12%  Similarity=0.117  Sum_probs=35.9

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc--ccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK--ITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~--lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|+.+..     ++.|.|.+|+.+|. +.|.|.+.|.  +.+.....+ +.+|+|..+
T Consensus       203 ~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~~~~~~~~fg~-gt~l~v~~~  259 (264)
T 2gjj_A          203 KNKAAFTVDTSSSTAFMQLNSLTSEDS-ADYYCVRSGNYEEYAMDYWGQ-GTSVTVSSH  259 (264)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECSGGGCSCCCBCC-CEEEEEC--
T ss_pred             CCceEEEEcCCCCEEEEEECcCCcccC-EEEEEEEecCCCCcceEEECC-CEEEEEecc
Confidence            46776642     46899999999996 9999999995  233333454 779998764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.20  E-value=0.00028  Score=44.52  Aligned_cols=48  Identities=17%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc-C--cEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT-G--ESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT-g--e~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     +.|.|.+|+.+|. +.|.|.+.+.-- +  .....+ +.+|.|+
T Consensus       184 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~~~~~~~~~~fg~-gt~l~V~  239 (240)
T 1moe_A          184 QGKATITADTSSNTAYLQLTSLTSEDT-AVYYCAPFGYYVSDYAMAYWGQ-GTSVTVS  239 (240)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECSTTSCTTSCCCCCC-CEEEEEC
T ss_pred             cccEEEEEcccCCEEEEEECcCCHHHC-EEEEEEEEecCCCCcCeEEECC-CeEEEeC
Confidence            467887654     4799999999996 999999996421 2  223333 7788885

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.20  E-value=0.00016  Score=44.91  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.+|+.+|+ |.|+|++.|.. |....|. ...|.|.+
T Consensus        56 ~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~~~s~-~~~l~V~~   96 (196)
T 2d3v_A           56 NKARFSIPSMTEHHA-GRYRCYYYSPA-GWSEPSD-PLELVVTG   96 (196)
T ss_dssp             TEEEEEESSCCGGGC-EEEEEEEEETT-EECBCCC-CEEEEEEC
T ss_pred             cccEEEeccCChhHC-eEEEEEEeCCC-CcCCcCc-cEEEEecC
Confidence            467899999999996 99999998763 2222232 45666665

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.20  E-value=0.0003  Score=47.10  Aligned_cols=47  Identities=13%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++++.+...+.|.|.+|+.+|. |.|.|.+.|.+-..   +. ...|.|.+|
T Consensus       356 ~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~---~~-~~~l~V~~P  402 (403)
T 3laf_A          356 SDYFQIVGGSNLRILGVVKSDE-GFYQCVAENEAGNA---QS-SAQLIVPKP  402 (403)
T ss_dssp             SSSEEEETTTEEEESSCCGGGC-EEEEEEEEETTEEE---EE-EEEEECCCC
T ss_pred             CCcEEEecCccEEEeccccccC-EEEEEEEEcCCceE---EE-EEEEEEeCC
Confidence            4567777889999999999995 99999999976432   22 458888876

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.20  E-value=0.00031  Score=43.71  Aligned_cols=47  Identities=28%  Similarity=0.353  Sum_probs=34.8

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..++ ...+|.|.|.+++.+|. +.|.|++.|.+-..  .+. ...|.|.++
T Consensus       155 ~~~~-~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~--~s~-~~~l~V~~~  201 (212)
T 2yd1_A          155 NPRY-SLKDGFLQIENSREEDQ-GKYECVAENSMGTE--HSK-ATNLYVKVR  201 (212)
T ss_dssp             STTE-EEETTEEEECSCCGGGC-EEEEEEEEETTEEE--ECC-CEEEEEEC-
T ss_pred             CCeE-EccCCeEEEccCChhhC-EEEEEEeecCCCce--eEE-EEEEEEEec
Confidence            3455 34688999999999996 99999999986422  222 568888864

>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1

Probab=97.19  E-value=0.0003  Score=41.26  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=29.3

Q ss_pred             cEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSITGF   59 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~ep   59 (66)
                      .|.|.|++.+|. +.|.|++.+..  .+.....+ +.+|.|.+|
T Consensus        76 ~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~g~-gt~l~V~~~  117 (117)
T 1dqt_A           76 NLTIQGLRAVDT-GLYLCKVELMYPPPYFVGMGN-GTQIYVIDP  117 (117)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEEEESSSCEEEECS-CEEEECCCC
T ss_pred             EEEEeCCCcccC-EEEEEEEeecCCCCeEEeeCC-CCEEEEeCC
Confidence            599999999996 99999997531  12223333 778888775

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.19  E-value=0.0014  Score=38.00  Aligned_cols=48  Identities=17%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEe
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.  +   +..|.|.|++.+|. +.|.|++.... .++....+ +.+|.|.
T Consensus        58 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~fg~-GT~l~V~  111 (112)
T 2z35_A           58 SRGFEATYNKEATSFHLQKASVQESDS-AVYYCALSENYGNEKITFGA-GTKLTIK  111 (112)
T ss_dssp             ETTEEEECBTTTTBCCEEESSCCSTTC-SEEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEEcCCCCceeEECC-CEEEEEe
Confidence            4678874  2   34699999999996 99999998421 33444444 7788775

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=97.19  E-value=0.00029  Score=41.47  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     ..|.|.||+.+|. +.|.|++.+..  .++...-+ +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-GT~l~V~  119 (120)
T 3b9v_A           65 KGRFTISADTSKNTAYLQMNSLRAEDT-AVYYCARWGGDGFYAMDYWGQ-GTLVTVS  119 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTTSSBCCSSCCC-CEEEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEECCCCHHHC-EEEEEEEEcCCCccccceECC-CEEEEec
Confidence            468888632     3699999999996 99999998752  23333333 6788774

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.18  E-value=0.00024  Score=44.30  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc--EEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE--SQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge--~~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+|+.+|+ |.|+|.+.|...+.  ...|. ...|.|.+
T Consensus        61 ~~~~l~I~~v~~~D~-G~Y~C~a~~~~~~~~~~~~s~-~~~l~V~~  104 (201)
T 1nkr_A           61 SKANFSISRMTQDLA-GTYRCYGSVTHSPYQVSAPSD-PLDIVIIG  104 (201)
T ss_dssp             EEEEEEESSCCGGGC-EEEEEEEEBTTBTTCCCCCCC-CEEEEEEC
T ss_pred             ceEEEEeccCCcccC-eEEEEeEecCCCCccccCCCC-CEEEEeec
Confidence            468999999999996 99999998764431  12232 45666664

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.17  E-value=0.00012  Score=47.21  Aligned_cols=44  Identities=16%  Similarity=0.042  Sum_probs=32.5

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcE--EecccceeEEEecc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGES--QASVFQTRLSITGF   59 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~--~~S~~~~~l~v~ep   59 (66)
                      ...+.|.|.+|+.+|+ |.|.|.+.|......  ..|. +..|.|++.
T Consensus       154 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~~~s~~S~-~~~l~V~g~  199 (218)
T 1uct_A          154 EHPANFSLGPVDLNVS-GIYRCYGWYNRSPYLWSFPSN-ALELVVTDS  199 (218)
T ss_dssp             SSSEEEECCSCCGGGC-EEEEEEEECTTSTTEECCCCC-CEEEEEC--
T ss_pred             CccCEEEEccCCcccC-EEEEEEEEcCCCCCcCCCCCC-cEEEEEecC
Confidence            4578999999999996 999999998753222  2343 778888864

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.17  E-value=0.00022  Score=46.76  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++   .|.|.+|+.+|. +.|.|++.|.
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~  104 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDF-ATYYCQQHYT  104 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS
T ss_pred             CCCEEEeccCCeEEEEEccCChhhC-EEEEEEEecC
Confidence            5688887655   799999999996 9999999986

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=97.16  E-value=0.00083  Score=41.97  Aligned_cols=47  Identities=26%  Similarity=0.405  Sum_probs=37.2

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +-.|.|.|++.+|. +.|.|++...  ++..... +.+|.|.+
T Consensus        68 ~~Rf~~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~--~~~~fG~-GT~L~V~~  119 (150)
T 3dmm_D           68 KKRNIILESSDSRRPFLSIMNVKPEDS-DFYFCATVGS--PKMVFGT-GTKLTVVD  119 (150)
T ss_dssp             TTCCEEEESTTSSSCEEEESSCCGGGC-EEEEEEEECS--SCEEECC-CEEEEEES
T ss_pred             cCcEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEecC--CcceECC-CEEEEEeC
Confidence            5788886  3   34699999999996 9999999853  4555555 88999987

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=97.16  E-value=0.00061  Score=44.77  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=26.8

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.+.
T Consensus        64 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  100 (248)
T 3u2s_H           64 WGRLSISRDNSKDTLYLQMNSLRVEDT-ATYFCVREAG  100 (248)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEECCCCHHHC-EEEEEEEeCC
Confidence            47888865443     99999999996 9999999874

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=97.16  E-value=0.00066  Score=43.18  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..++     .|.|.||+.+|. +.|.|++.+.
T Consensus        69 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~  105 (232)
T 3qhz_H           69 KTRLTISKDTSKSQVVLTMTNMDPVDT-ATYYCARTLR  105 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECC
T ss_pred             cCceEEEeccCCCEEEEEECcCChhhC-EEEEEEEeec
Confidence            4688887544     399999999996 9999999875

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.16  E-value=0.00018  Score=44.64  Aligned_cols=41  Identities=17%  Similarity=0.112  Sum_probs=28.5

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.+|+.+|+ |.|+|++.|.. +....|. ...|.|.+
T Consensus        55 ~~~~L~I~~v~~~D~-G~Y~C~~~~~~-~~~~~s~-~~~l~V~~   95 (188)
T 1oll_A           55 NKVKFYIPDMNSRMA-GQYSCIYRVGE-LWSEPSN-LLDLVVTE   95 (188)
T ss_dssp             CEEEEEESSCCGGGC-EEEEEEEEETT-EECCCCC-CEEEEEES
T ss_pred             ceeEEEeCcCCcccC-eEEEEEecCCC-CCCCCCC-ceEEEecc
Confidence            467899999999996 99999998752 1111232 45666653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.15  E-value=0.00031  Score=45.75  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..++   .|.|.+|+.+|+ +.|.|++.|..
T Consensus        78 ~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~  113 (268)
T 1x9q_A           78 PDRFSGSGSGTDFTLKINRVEAEDL-GVYFCSQSTHV  113 (268)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSS
T ss_pred             cccEEEEcCCCEEEEEECCCChhHC-EEEEEEEecCC
Confidence            5788886543   799999999996 99999999873

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.15  E-value=0.00057  Score=41.31  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+++.+..    .+.|.|.+++.+|. |.|+|.+.|...+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~   87 (191)
T 1epf_A           49 QQRISVVWNDDDSSTLTIYNANIDDA-GIYKCVVTAEDGT   87 (191)
T ss_dssp             SSSEEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTTE
T ss_pred             CCeEEEEECCCCceEEEEccCCcccC-EEEEEEEEcCCCc
Confidence            45666643    58899999999996 9999999998743

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.15  E-value=0.00078  Score=45.05  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             CCeEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++++.+.++|.|.|.++     +.+|+ |.|+|++.|...+... +. ...|.|..|
T Consensus        68 ~~~~~~~~~~~l~i~~~~~~~~~~~D~-G~Y~C~~~~~~~~~~~-s~-~~~l~v~~p  121 (403)
T 3laf_A           68 DDRKQQLPNGSLLIQNILHSRHHKPDE-GLYQCEASLGDSGSII-SR-TAKVMVAGP  121 (403)
T ss_dssp             CTTEEECTTSCEEECSCCCBTTBCSSC-EEEEEEEECGGGCEEE-CC-CEEEEECCC
T ss_pred             cccEEEecCCcEEEeeeeccCCCCCcc-eEEEEEEEeCCCccEE-EE-EEEEEecCC
Confidence            56888899999999999     67785 9999999987666533 33 456666654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=97.15  E-value=0.00013  Score=42.72  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=28.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE-EecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~-~~S~~~~~l~v~e   58 (66)
                      ...|.|.+|+.+|+ |.|+|++.|...... ..|. +..|.|+.
T Consensus        55 ~~~l~I~~v~~~ds-G~Y~C~~~n~~~~~~s~~Sd-pl~L~V~~   96 (105)
T 2vsd_A           55 AAEFSFAVTNLEDA-GTYQCRYQVSEPLWTSNQSD-PVELVLTI   96 (105)
T ss_dssp             EEEEEEECCSGGGC-EEEEEEEEEETTEEECCCCC-CEEECCC-
T ss_pred             EEEEEECCCCHHHC-eEEEEEEEcCCCCcccCCCC-CEEEEEEE
Confidence            35799999999996 999999998642111 2343 66777653

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=97.15  E-value=8.6e-05  Score=44.29  Aligned_cols=29  Identities=17%  Similarity=0.362  Sum_probs=25.5

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .++.|.|.+|+.+|. |.|.|++.|..-..
T Consensus        88 ~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           88 AASTISIDTLVEEDT-GTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEEECSCCGGGC-EEEEEEEECCTTSS
T ss_pred             cceEEEECCCCcccC-EEEEEEEEecCCcc
Confidence            578999999999996 99999999986544

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=97.14  E-value=0.00067  Score=43.61  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+||.+..  ++   .|.|.||+.+|. +.|.|++.+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~   99 (232)
T 1dn0_B           64 KSRVTISVDTSKNQFSLKLSSVTAADT-AVYYCARPP   99 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECS
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCcccC-EEEEEEEec
Confidence            47888864  22   799999999996 999999984

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.13  E-value=0.00029  Score=46.48  Aligned_cols=43  Identities=21%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++.|.|.+|+.+|. |.|+|.+.|....-...|. +..|.|+++
T Consensus       150 ~~~~l~I~~v~~~d~-G~Y~C~a~n~~~~~s~~S~-~~~l~V~~~  192 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHR-GTYRCFGSYNNHAWSFPSE-PVKLLVTGD  192 (242)
T ss_dssp             SEEEEEEEECCGGGC-EEEEEEEEEETTEECCCCC-CEEEEEEC-
T ss_pred             ceEEEEeCCCccccC-EEEEEEEECCCCcccCCCC-CEEEEEecc
Confidence            468899999999996 9999999987511122343 778888873

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.13  E-value=0.00047  Score=45.61  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=35.5

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeeccc------cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKI------TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~l------Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..++     .|.|.||+.+|. +.|.|++.+..      .+....+. ..+|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~~~~g~~~~~~~~~~-~~~L~V~~  124 (280)
T 3fku_X           65 QGRVTITADQSTRTAYMDLRSLRSEDT-AVYYCARSPSYICSGGTCVFDHWGQ-GTLVTVSS  124 (280)
T ss_dssp             TTTCEEEEETTTTEEEEEECSCCSTTC-EECCEEECSSSSSSSTTCCCCEECC-CCEEEECC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEecCCccccccccccEECC-CEEEEEcC
Confidence            3688887543     699999999996 99999999862      12233343 56777766

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.13  E-value=0.0002  Score=39.97  Aligned_cols=26  Identities=15%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|.|.+++.+|. |.|.|.+.|..-
T Consensus        57 ~~~L~i~~~~~~D~-G~Y~C~a~N~~G   82 (93)
T 1wit_A           57 TTSIFFPSAKRADS-GNYKLKVKNELG   82 (93)
T ss_dssp             EEEEECTTBCGGGC-EEEEEEEEETTE
T ss_pred             EEEEEECCCChhcC-EEEEEEEEcCCC
Confidence            46699999999996 999999999874

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.13  E-value=0.00035  Score=43.96  Aligned_cols=39  Identities=15%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.|.|.+|+.+|. |.|.|.+.|.. |..  +. ...|.|.++
T Consensus       170 ~~~L~I~~v~~~D~-G~Y~C~a~N~~-g~~--~~-~~~l~V~~~  208 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQ-GLYTCAASSGL-MTK--KN-STFVRVHED  208 (213)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEEEC-
T ss_pred             eEEEEECCCCcccC-EEEEEEEecCC-CcE--EE-EEEEEEecc
Confidence            34699999999996 99999999986 443  33 557888763

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=97.12  E-value=0.00035  Score=46.65  Aligned_cols=46  Identities=24%  Similarity=0.378  Sum_probs=35.1

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|+.+..   .+.|.|.+|+.+|. |.|+|++.|.. |+.  +. .+.|.|..
T Consensus        51 ~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~   99 (389)
T 2jll_A           51 DGRIEVKGQHGSSSLHIKDVKLSDS-GRYDCEAASRI-GGH--QK-SMYLDIEY   99 (389)
T ss_dssp             SSSEEEEECSSEEEEEEESCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEEEE
T ss_pred             CCeEEEeccCCcceEEEcccChhhC-EEEEEEEEeCC-CCc--ce-EEEEEEEe
Confidence            57888864   57899999999996 99999999975 332  32 45676654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.12  E-value=0.00021  Score=44.21  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..+.|.|.+|+.+|+ |.|+|.+.|... ....|. ...|.|.
T Consensus        56 ~~~~L~i~~v~~~D~-G~Y~C~a~n~~g-~~~~s~-~~~l~V~   95 (196)
T 3p2t_A           56 NKARFSIPSMTEDYA-GRYRCYYRSPVG-WSQPSD-PLELVMT   95 (196)
T ss_dssp             SEEEEEESSCCGGGC-EEEEEEEEETTE-EBCCCC-CEEEEEE
T ss_pred             ceEEEEeccCCcccC-ceEEEEEeCCCc-ccCCCc-cEEEEec
Confidence            468899999999996 999999998753 112232 4556664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.12  E-value=0.00059  Score=44.49  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+...     +.|.|.+|+.+|+ +.|.|++.|..
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~~  102 (256)
T 1nqb_A           65 KSKATLTVDKPSSTAYMQLSSLTSEDS-AVYYCARYDYY  102 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCTT
T ss_pred             CCeEEEEEecCCCEEEEEECcCChhhC-EEEEEEEeecc
Confidence            478888753     4799999999996 99999999873

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.12  E-value=0.00068  Score=48.77  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .||+.+..+|.|.|.||+.+|+ |.|+|++.+.-.+
T Consensus        62 ~gr~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~~   96 (642)
T 1e07_A           62 SGREIIYPNASLLIQNIIQNDT-GFYTLHVIKSDLV   96 (642)
T ss_pred             cCceeeccCCcEEECCCCcccC-cEEEEEEEcCCCe
Confidence            4688888999999999999996 9999999986433

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.12  E-value=0.00027  Score=43.67  Aligned_cols=43  Identities=26%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ....+.|.|.+|+.+|+ |.|+|.+.|.. |....|. ...|.|.+
T Consensus        48 ~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~-g~~~~s~-~~~l~V~~   90 (184)
T 2gi7_A           48 YQDQAVLFIPAMKRSLA-GRYRCSYQNGS-LWSLPSD-QLELVATG   90 (184)
T ss_dssp             EESSSEEEESSCCGGGC-EEEEEEEEETT-EEBCCCC-CEEEEEES
T ss_pred             cCcccEEEECcCChhhC-ceEEEEEEcCC-CccCCCC-CEEEEecC
Confidence            34578899999999996 99999999864 2112222 44566643

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.12  E-value=0.00035  Score=41.15  Aligned_cols=48  Identities=27%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc---------cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI---------TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l---------Tge~~~S~~~~~l~v~   57 (66)
                      ++||.+..     +..|.|.||+.+|. +.|.|++.+..         +.....-+ +.+|.|+
T Consensus        52 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~~~fg~-GT~L~V~  113 (113)
T 1sq2_N           52 GGRYVETVNSGSKSFSLRINDLTVEDG-GTYRCGLGVAGGYCDYALCSSRYAECGD-GTAVTVN  113 (113)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECBTTTBCCGGGGGSTTCCBCC-CEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEEeCCCccceeEeehhhhhcCC-ceEEEeC
Confidence            46887642     34699999999996 99999999841         12333333 6777764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.12  E-value=0.0004  Score=42.53  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=34.8

Q ss_pred             cCCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++++.+.. ++.|.|.+|+.+|. |.|.|.+.|.+-..  .|. +-.|.|..|
T Consensus       152 ~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~g~~--~s~-~~~l~v~~~  201 (208)
T 3r4d_A          152 LTERMTLSQNNSILRIDPIKREDA-GEYQCEISNPVSVR--RSN-SIKLDIIFD  201 (208)
T ss_dssp             CCSSEEEETTTTEEEESSCCGGGC-EEEEEEEECTTCCE--ECC-CEEECCC--
T ss_pred             CCCCeEEcCCCCEEEEeccCHHhC-eEEEEEEecCCCcc--cCC-ceeeeEEeC
Confidence            356777765 48899999999995 99999999987432  343 555655443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.12  E-value=0.00041  Score=42.48  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++++.+..+|.   |.|.+++.+|. |.|+|++.|..
T Consensus        46 ~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~~~n~~   82 (212)
T 2r15_A           46 YSDRVKTGVTGEQIWLQINEPTPNDK-GKYVMELFDGK   82 (212)
T ss_dssp             CCSSEEEEEETTEEEEEEESCCGGGC-EEEEEEEECSS
T ss_pred             CCCeEEEEEeCCEEEEEECCCCcccC-EEEEEEEecCC
Confidence            346787776665   99999999996 99999999854

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.11  E-value=0.00051  Score=47.71  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=28.1

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..+     +.|.|.||+.+|+ |.|+|++.|..
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  102 (457)
T 1hzh_H           65 QDRVTFTADTSANTAYMELRSLRSADT-AVYYCARVGPY  102 (457)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCCC
T ss_pred             cCceEEEEeCCCCEEEEEECCCCcccC-EEEEEEEecCC
Confidence            578888753     3799999999996 99999999875

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.11  E-value=0.00052  Score=44.18  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .|.|.+|+.+|+ |.|+|++.|.. |....|. ...|.|.+
T Consensus        65 ~L~I~~v~~~D~-G~Y~C~a~n~~-~~~~~s~-~~~l~V~~  102 (218)
T 1uct_A           65 EFVIDHMDANKA-GRYQCQYRIGH-YRFRYSD-TLELVVTG  102 (218)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEETT-TEEEECC-CEEEEEEC
T ss_pred             EEEEcccccccC-EEEEEEEEcCC-CceeecC-CEEEEEcC
Confidence            899999999996 99999999963 3333343 56666654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=97.11  E-value=0.001  Score=44.30  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+..
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~  102 (257)
T 3bn9_D           65 KGRFTISRDNSKNTLYLQMSSLRAEDT-AVYYCARPYLT  102 (257)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCGGGC-EEEEEEEECCS
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhC-EEEEEEEecCC
Confidence            47888865     24799999999996 99999999864

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=97.10  E-value=0.00063  Score=40.88  Aligned_cols=48  Identities=19%  Similarity=0.378  Sum_probs=35.0

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc---------cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI---------TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l---------Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     ..|.|.|++.+|. +.|.|++.+..         ++....-. +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~~~~~fG~-GT~l~V~  126 (127)
T 2x1q_A           65 KGRFTFSRDNAKNLLYLEMLSLEPEDT-AVYYCAASSRVFYTEVLQTTTGYDYWGQ-GTQVTVS  126 (127)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECCSSCCGGGGSGGGCSEECC-CEEEEEC
T ss_pred             CCcEEEEEeCCCCEEEEEEcCCCHHHC-EEEEEEEEecCCccccccccccccccCC-CEEEEEe
Confidence            468888632     3699999999996 99999998752         23444443 7788875

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=97.09  E-value=0.00063  Score=39.52  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+.-..+   +. ...|.|..
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~~~~---~~-~v~L~V~~  110 (115)
T 2or7_A           60 NSRYQLKGNISEGNVSLTIENTVVGDG-GPYCCVVEIPGAFH---FV-DYMLEVKP  110 (115)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGC-EEEEEEECCTTSCE---EE-EEEEEEES
T ss_pred             CccEEEecCccCCeEEEEEccCCHHHC-EEEEEEEECCCcee---EE-EEEEEEcC
Confidence            46777642     35799999999996 99999998753222   22 34666654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=97.09  E-value=0.0006  Score=43.64  Aligned_cols=47  Identities=19%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             cCCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.+|.+...   +.|.|.+|+.+|. |.|.|.+.|.+-..   +. ...|.|++
T Consensus       235 ~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~---~~-~~~l~V~~  284 (284)
T 2rik_A          235 SGKKYKIMSENFLTSIHILNVDSADI-GEYQCKASNDVGSY---TC-VGSITLKA  284 (284)
T ss_dssp             BTTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEECC
T ss_pred             CCCCEEEEEcCCEEEEEEcCCCcccC-EEEEEEEEeCCCce---eE-EEEEEEcC
Confidence            3557777665   4799999999996 99999999986432   22 34677654

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=97.07  E-value=0.00072  Score=41.68  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+  .+...... +.+|.|.+
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~--~~~~~fg~-GT~L~V~~  116 (139)
T 2d7t_H           65 QGRVTMTRDTSISTVYMEVRRLRSDDT-AVYYCATGW--WGMDVWGQ-GTLVTVSS  116 (139)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECS--SSCCEECC-CEEEEECC
T ss_pred             CCeEEEEEeCCCCEEEEEECcCCHHHC-EEEEEEEee--CCcCEECC-CEEEEEec
Confidence            468888632     2599999999996 999999986  23444454 77898875

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.07  E-value=0.00086  Score=40.87  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+++.+|+ +.|+|++.|... . ..+. ...|.|..
T Consensus        67 ~~~L~i~~~~~~d~-G~Y~C~~~~~~~-~-~~~~-~~~l~V~~  105 (195)
T 2c5d_C           67 VSQLRITSLQLSDT-GQYQCLVFLGHQ-T-FVSQ-PGYVGLEG  105 (195)
T ss_dssp             EEEEEESSCCSTTC-EEEEEEEEETTE-E-EECC-CEEEEECC
T ss_pred             ccEEEEEeccccCC-cEEEEEEEeCCC-c-eecc-cEEEEEec
Confidence            46899999999996 999999999642 2 2232 45666654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=97.07  E-value=0.00028  Score=43.77  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|+.+.+      ++.|.|.||+.+|+ |.|+|++.+.
T Consensus        57 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~   94 (222)
T 4i0k_A           57 SNRTALFPDLLVQGNASLRLQRVRVTDE-GSYTCFVSIQ   94 (222)
T ss_dssp             CSCEECCTTTGGGTBCCEEECSCCGGGC-SCEEEEEEEC
T ss_pred             eCcEEEecccccCCeEEEEECCcccccC-EEEEEEEEeC
Confidence            56777776      78899999999996 9999999985

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=97.07  E-value=0.00088  Score=43.93  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=27.1

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..    ++.|.|.||+.+|+ +.|.|++.|.
T Consensus        87 ~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~  122 (279)
T 2wbj_D           87 KDKFLINHASLTLSTLTVTSAHPEDS-SFYICSARDL  122 (279)
T ss_dssp             SSSEEEEECSSSEEEEEESSCCGGGC-EEEEEEEEET
T ss_pred             CCcEEEEeCCCCEEEEEEccCCccCC-EEEEEEEccc
Confidence            47888864    34799999999996 9999999984

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.06  E-value=0.00048  Score=43.34  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++.|.|.+|+.+|. |.|.|++.|..-...+.|. ...|.|+
T Consensus       221 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~G~~~~~s~-~~~l~V~  261 (262)
T 3rjd_A          221 TSSEYQILTARREDS-GLYWCEAATEDGNVLKRSP-ELELQVL  261 (262)
T ss_dssp             SCCEEEESSCCGGGC-EEEEEEEEETTSSCEEECC-CEEECEE
T ss_pred             CCceEEEEEechhhC-eEEEEEEEcccCceEEecC-CeEEEEe
Confidence            356799999999996 9999999998776556665 5566554

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=97.06  E-value=0.00083  Score=39.79  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=34.2

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc----cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI----TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l----Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+..    ..+...-. +.+|.|+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~fG~-GT~l~V~  121 (122)
T 1xiw_D           65 KDKATLTVDKSSSTAYMELLSLTSEDS-AVYYCARSGYYGDSDWYFDVWGQ-GTTLTVF  121 (122)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEESSTTTTTSCCEECC-CEEEEEC
T ss_pred             CCcEEEEEecCCCEEEEEECCCCHHHC-EEEEEEEecccccccCccceeCC-CEEEEEe
Confidence            468888632     2699999999996 99999998731    22334443 7788774

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=97.06  E-value=0.00033  Score=42.01  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=28.3

Q ss_pred             CCeEEEee-cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|..+.. +|.|.|.|++.||+ |.|+|++...-
T Consensus        62 ~~Rl~l~~~~~SL~I~nl~~~Ds-G~Y~c~i~~~~   95 (111)
T 2pkd_A           62 YERIHALGPNYNLVISDLRMEDA-GDYKADINTQA   95 (111)
T ss_dssp             TTCEEECTTTCCEEECSCCGGGC-EEEEEEEEESS
T ss_pred             CCcEEEeCCCEEEEECCCCHHHC-EEEEEEEEeCC
Confidence            47778874 89999999999996 99999997654

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=97.06  E-value=0.00073  Score=41.65  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=35.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc----------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI----------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l----------Tge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+..          .++...-. +.+|.|.+.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~~~~~~fG~-GT~l~V~~~  129 (137)
T 1rjc_A           65 QGRLTISLDNAKNTLYLQMNSLKPEDT-AMYYCAADTSTWYRGYCGTNPNYFSYWGQ-GTQVTVSSR  129 (137)
T ss_dssp             TTTEEEEEEC--CEEEEEECSCCGGGC-EEEEEEECCTTSCCSSCCCCGGGCCEECC-CEEEEEC--
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHC-EEEEEEEEcCCccccccccccccccEECC-CEEEEEccC
Confidence            478888632     2699999999996 99999998751          23444444 778888764

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=97.05  E-value=0.00025  Score=40.80  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=26.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     ++.|.|.||+.+|. |.|.|++.+.-
T Consensus        59 ~~r~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~   96 (116)
T 2or8_A           59 SSRYNLKGHISEGDVSLTIENSVESDS-GLYCCRVEIPG   96 (116)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGC-EEEEEEECCSS
T ss_pred             CCeEEEecCCCCCeEEEEECCCCcccC-EEEEEEEEcCC
Confidence            56777632     36799999999996 99999998864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.05  E-value=0.00047  Score=48.44  Aligned_cols=33  Identities=3%  Similarity=0.123  Sum_probs=28.4

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCc-ceeEEeecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYK-SYRCRTVNK   40 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~-~Y~C~~~~~   40 (66)
                      .+.+|.+.++|.|.|.+++.+|. + .|+|++.|.
T Consensus       158 ~~~~~~~~~~~~L~i~~~~~~d~-G~~Y~C~a~n~  191 (524)
T 2ec8_A          158 KDLRFIPDPKAGIMIKSVKRAYH-RLCLHCSVDQE  191 (524)
T ss_dssp             SSCEEEEETTTEEEEESCCGGGT-TCEEEEEEC--
T ss_pred             CCCceeECCCccEEEeccchhhC-CceEEEEEEEC
Confidence            36789999999999999999997 7 999999987

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=97.04  E-value=0.00068  Score=39.99  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..     +-.|.|.+++.+|. +.|.|++.+.. ++...-. +.+|.|+
T Consensus        63 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~-~~~~fG~-GT~l~V~  114 (115)
T 3k74_B           63 KGRFTISRDNAKNTLYLQMNSLTSEDT-AVYYCAKDWAT-GLAKKGQ-GTQVTVS  114 (115)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEESTTS-TTCEECS-CEEEEEC
T ss_pred             cccEEEEEcCCCCEEEEEECCCChHhC-EEEEEEEEcCC-CceEECC-CEEEEEe
Confidence            47898853     23599999999996 99999997632 4555554 7788886

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=97.04  E-value=0.00055  Score=45.32  Aligned_cols=44  Identities=16%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             eecc-cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         14 LSSG-DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        14 lpsG-eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+| .|.|.+|+.+|+ |.|.|++.|...|.....+....|.|.+
T Consensus       173 ~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          173 IPEGMNLSFLIALISNN-GNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             EEETTEEEEESCCGGGC-EEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             eecCCEEEEeeeeecCC-cEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            3444 599999999996 9999999999877752222244565654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.03  E-value=0.00053  Score=42.99  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++.|.|.+|+.+|. |.|.|++.|..
T Consensus       211 ~~~~L~i~~v~~~D~-G~Y~C~a~N~~  236 (250)
T 2fbo_J          211 GARNLVIRAAKITDA-GRVWCELATGQ  236 (250)
T ss_dssp             TTTEEEECSCCGGGC-EEEEEEEESSS
T ss_pred             CccEEEEecCCcccC-EEEEEEecCCc
Confidence            458999999999996 99999999965

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.02  E-value=0.0006  Score=41.38  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|+.+.. +.|.|.+++.+|. |.|+|++.|..
T Consensus        60 ~~r~~~~~-~~L~i~~~~~~d~-G~Y~C~~~~~~   91 (209)
T 1nbq_A           60 EDRVTFLP-TGITFKSVTREDT-GTYTCMVSEEG   91 (209)
T ss_dssp             TTTCEEET-TEEECSCCCTTSC-SEEEEEEEETT
T ss_pred             cCceEeec-cEEEEeeCCHHHC-cEEEEEEecCC
Confidence            45666654 9999999999996 89999999874

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=97.01  E-value=0.00061  Score=42.04  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+.-   ..+...-. +.+|.|.+..+
T Consensus        69 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fG~-GT~L~V~~~~~  128 (136)
T 3tpk_A           69 KGRFTISQDNAKNTVYLQMNNLKPEDT-AMYYCAAAPTATHALYFDYWGQ-GTQVTVSSASG  128 (136)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEESCSSCGGGCBCCCS-CEEEEEC----
T ss_pred             CCCEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEEeCCCCcccccEECC-CEEEEEEcCCC
Confidence            478887532     2499999999996 99999998642   13333443 78999987655

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.01  E-value=0.00075  Score=40.45  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=28.2

Q ss_pred             CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +.++.+.. ++.|.|.+++.+|. +.|.|.+.|..-.
T Consensus       142 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~  177 (189)
T 2v5t_A          142 NEKYILKGSNTELTVRNIINSDG-GPYVCRATNKAGE  177 (189)
T ss_dssp             SSSEEEETTTTEEEECSCCGGGC-EEEEEEEEETTEE
T ss_pred             CCcEEEecCCCEEEEcCCChhhC-eeEEEEEEeCCCc
Confidence            45666654 67899999999995 9999999998643

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.01  E-value=0.0006  Score=43.75  Aligned_cols=45  Identities=13%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..+     +.|.|.+|+.+|+ |.|.|++.|.+    ..- .+.+|.|..
T Consensus       186 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~~----~fG-~gt~l~v~~  235 (242)
T 2znx_A          186 KSRISITRDTSKNQYYLDLNSVTTEDT-ATYYCANXDGD----YXG-QGTLVTVSA  235 (242)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGC-EEEEEEETTSS----CBC-CCEEEEECC
T ss_pred             cCcEEEEecCCCCEEEEEECCCCcCcC-EEEEEeccCCc----ccC-CCeEEEEEe
Confidence            568887642     4799999999996 99999999853    122 266777764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.01  E-value=0.0004  Score=43.57  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             CCeEEEee--cccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+|..+..  ++.|.|.+|+.+|+ |.|+|++.|...
T Consensus        79 ~~r~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~  114 (250)
T 2fbo_J           79 LGRASVANLAAPTLRLTHVHPQDG-GRYWCQVAQWSI  114 (250)
T ss_dssp             TTTEECSCTTSCCEEECSCCGGGC-EEEEEEEECTTC
T ss_pred             CceEEeccCCcceEEEeeCChhhC-eEEEEEeccCcc
Confidence            45666655  46899999999996 999999998654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.00  E-value=0.0012  Score=39.65  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.|.|.+++.+|. |.|+|++.|.. |. ..+. ...|.|..
T Consensus        60 ~~L~i~~~~~~d~-G~Y~C~~~~~~-~~-~~~~-~~~l~V~~   97 (182)
T 1rhf_A           60 GFLSLKSVERSDA-GRYWCQVEDGG-ET-EISQ-PVWLTVEG   97 (182)
T ss_dssp             EEEEESSCCGGGC-EEEEEEESSCT-TC-EECC-CEEEEEEC
T ss_pred             EEEEEeecCcccC-eEEEEEEEcCC-Cc-EEEE-EEEEEEec
Confidence            6899999999996 99999999973 22 2232 44666654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.00  E-value=0.00057  Score=41.63  Aligned_cols=38  Identities=13%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+++.+|+ |.|+|++.|.  |....   ...|.|..
T Consensus        54 ~~~~L~i~~~~~~d~-G~Y~C~~~n~--~~~~~---~~~l~V~~   91 (190)
T 2wv3_A           54 SNMEYRINKPRAEDS-GEYHCVYHFV--SAPKA---NATIEVKA   91 (190)
T ss_dssp             SEEEEEESSCCGGGC-EEEEEEEEET--TEEEE---EEEEEEEC
T ss_pred             ccEEEEEecCCcccC-EEEEEEEEeC--Ccccc---cEEEEEec
Confidence            457899999999996 9999999998  44322   33555554

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=96.99  E-value=0.0014  Score=42.91  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=34.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +..|.|.+++++|. +.|.|++.+..  .+...... +.+|.|..
T Consensus        61 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-gt~L~V~~  116 (210)
T 2eys_A           61 NGRYTATLDADTKQSSLHITASQLSDS-ASYICVVSDRGSTLGRLYFGR-GTQLTVWP  116 (210)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGC-EEEEEEEESCSSTTCCEEECC-CEEEEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEEccCCcccC-ceEEEEEEccCCCcccceECC-CEEEEEEC
Confidence            57888752     24799999999996 99999998743  23333333 56777764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=96.99  E-value=0.00078  Score=45.78  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+...     +.|.|.+|+.+|+ |.|.|++.|..
T Consensus       283 ~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~  320 (438)
T 1qgc_4          283 KGRFTISRDNAKNTLYLQMSSLRSADT-AMYYCVRREDG  320 (438)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-CEEEEEECCSS
T ss_pred             CCcEEEEeecCCCeEEEEECCCChhhC-EEEEEEEEccC
Confidence            478888753     3899999999996 99999999843

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=96.98  E-value=0.00079  Score=40.45  Aligned_cols=50  Identities=24%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      .+||.+.-    +-.|.|.|++.+|. +.|.|++.+.  ++..... +.+|.|.+...
T Consensus        66 ~~Rf~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~--~~~~fg~-GT~l~V~~~l~  119 (125)
T 3r8b_B           66 PDGYKASRPSQENFSLILELATPSQT-SVYFCASGGG--GTLYFGA-GTRLSVLYGSS  119 (125)
T ss_dssp             CTTCEEEEEETTEEEEEETTCCGGGC-EEEEEEEEET--TEEEECC-CEEEEEEBCC-
T ss_pred             CCceEEEecCCCEEEEEECCCChhhC-EEEEEEEcCC--CCcEECC-CEEEEEeeccc
Confidence            46777752    34599999999996 9999999763  4555555 88999987544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=96.97  E-value=0.0007  Score=44.04  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=24.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQ   46 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~   46 (66)
                      ++.|.|.||+.+|+ |.|+|++.|.-.|...
T Consensus        73 ~~sL~I~~v~~~D~-G~Y~C~a~n~~~~~~~  102 (308)
T 4fom_A           73 DATITLHNIGFSDS-GKYICKAVTFPLGNAQ  102 (308)
T ss_dssp             BCCEEECSCCGGGC-EEEEEEEEETTTEEEE
T ss_pred             ceEEEEccCCHHHC-EEEEEEEeeCCCccee
Confidence            46799999999996 9999999987555543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=96.96  E-value=0.0006  Score=45.35  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccC--cEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITG--ESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg--e~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     ++.|.|.||+.+|. +.|.|++.|...|  ....+. ..+|.|.+
T Consensus        87 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~~g~~~~~~~~-~~~L~V~~  142 (291)
T 2gki_A           87 KGKATLTSDKSSSTAYMELSSLTSEDS-AVYYCARGAYKRGYAMDYWGQ-GTSVTVSS  142 (291)
T ss_dssp             BTTBCEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECGGGTTCEEEECC-CEEEEECC
T ss_pred             CCCEEEEEeCCCCEEEEEECcCCHHHC-EEEEEEEeccccccccceeCC-CcEEEEec
Confidence            36777653     35799999999996 9999999987532  222233 55777766

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=96.96  E-value=0.001  Score=42.33  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=27.1

Q ss_pred             CeEEEe-----ecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          9 GKYVVL-----SSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         9 ~ry~il-----psGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +|+.+.     .++.|.|.||+.+|+ |.|+|++.|....
T Consensus        71 ~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~  109 (268)
T 3mj6_A           71 NRSHLVGDTFHNDGSLLLQDVQKADE-GIYTCEIRLKNES  109 (268)
T ss_dssp             TTEEECSCTTTTBCCEEECSCCGGGC-EEEEEEEEETTCC
T ss_pred             CceEEeecCCCCEEEEEECCCCHhHC-EEEEEEEEecCCc
Confidence            566653     248899999999996 9999999986443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.95  E-value=0.0016  Score=41.78  Aligned_cols=49  Identities=14%  Similarity=0.069  Sum_probs=33.4

Q ss_pred             cCCeEEEee-cc----cEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLS-SG----DLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilp-sG----eL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~   57 (66)
                      ..+||.+.. .+    .|.|.+|+.+|+ +.|.|++.+.- ......+. +.+|.|.
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~-~~~L~V~  118 (230)
T 1ypz_F           64 EYKKMEASKNPSASTSILTIYSLEEEDE-AIYYCSYGEGSSGFHKVFAE-GTKLIVI  118 (230)
T ss_dssp             SSSEEEEEECCTTTEEEEEECSCCGGGC-SEEEEEECCTTTCCCCEECS-CEEEEEE
T ss_pred             cCCeEEEEEcCCCCEEEEEECcCChhhC-EEEEEEEECCCCCcccccCC-CEEEEEe
Confidence            358898864 22    799999999996 99999999851 01112222 4567775

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.95  E-value=0.00073  Score=45.21  Aligned_cols=42  Identities=19%  Similarity=0.185  Sum_probs=31.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc-E-EecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE-S-QASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge-~-~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+|+.+|+ |.|+|.+.|...+. . ..|. ...|.|++
T Consensus        60 ~~~~L~I~~v~~~Ds-G~Y~C~a~~~~~~~~~s~~S~-~~~L~V~~  103 (257)
T 1b6u_A           60 SKANFSIGPMMQDLA-GTYRCYGSVTHSPYQLSAPSD-PLDIVITG  103 (257)
T ss_dssp             EEEEEEECSCCTTTC-EEEEEEEECSSCTTSCCCCCC-CEEEEEEC
T ss_pred             ceEEEEeecCCcccC-EEEEEeEeccCCCccccccCC-CEEEeccc
Confidence            468899999999996 99999998765432 1 2233 66777775

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=96.95  E-value=0.0007  Score=40.77  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=26.4

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+.-+     ..|.|.|++.+|. +.|.|++.+.
T Consensus        64 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~  100 (127)
T 1kxt_B           64 KGRFTISRDNAANTAYLQMDSLKPEDT-AVYYCAAGPG  100 (127)
T ss_dssp             TTTEEEEECSSSSEEEEEECSCCGGGC-EEEEEEECSS
T ss_pred             CCeEEEEEeCCCCEEEEEECcCCHHHC-EEEEEEEEcC
Confidence            478888632     3699999999996 9999999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=96.94  E-value=0.00029  Score=48.63  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..+     +.|.|.||+.+|+ |.|+|++.|.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~  100 (434)
T 1igy_B           64 KDKATLTRDRSSNTANIHLSSLTSDDS-AVYYCVREGE  100 (434)
T ss_dssp             TTTEECCBCGGGCBBCEEECSBCGGGC-SEECCCCSSS
T ss_pred             cccEEEEEECCCCEEEEEECCCChHHC-EEEEEEEEcc
Confidence            568888653     4799999999996 9999999983

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=96.93  E-value=0.00094  Score=39.76  Aligned_cols=49  Identities=12%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+.. .+...... +.+|.|.+
T Consensus        67 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~fg~-GT~L~V~~  121 (124)
T 1dlf_H           67 KGRFTISRDDSKRRVYLQMNTLRAEDT-GIYYCTGIYYHYPWFAYWGQ-GTLVTVSA  121 (124)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEBTTBSSCCCCCC-CEEEEEC-
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHC-EEEEEEEEeCCCcccceECC-CEEEEEec
Confidence            478888632     2599999999996 99999998752 12222233 67888864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.92  E-value=0.0006  Score=41.41  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             cCCeEEEee---cccEEEee-cCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLS---SGDLYVFN-ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilp---sGeL~I~n-v~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++|.+..   .+.|.|.+ ++.+|. +.|.|++.|.+-. .  +. ...|.|.|
T Consensus       147 ~~~~~~~~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~N~~g~-~--~~-~~~l~V~d  197 (197)
T 2j8h_A          147 NNGHYQVIVTRSFTSLVFPNGVERKDA-GFYVVCAKNRFGI-D--QK-TVELDVAD  197 (197)
T ss_dssp             SSSSCEEEECSSEEEEECTTCCCGGGC-EEEEEEEEETTEE-E--EE-EEEEEEEC
T ss_pred             cCCCEEEEEcCCceEEEEeCCCCcccC-EeEEEEEEeCCCc-E--eE-EEEEEEeC
Confidence            345666653   47899999 999996 9999999998643 2  22 44666653

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=96.92  E-value=0.0011  Score=43.47  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=35.3

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeeccc-----cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNKI-----TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~l-----Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..  +   ..|.|.||+.+|. +.|.|++.+.-     ++...... +.+|.|..
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~~~~~~~~~~~~~~~~~g~-gt~L~V~~  119 (229)
T 1hxm_A           61 KDNFQGDIDIAKNLAVLKILAPSERDE-GSYYCACDTLGMGGEYTDKLIFGK-GTRVTVEP  119 (229)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEECCCCSSSCCCCCEEBC-CEEEEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEECcCCHhHC-eEEEEEEecCCCcccccchhhcCc-cEEEEEec
Confidence            57898863  2   2799999999996 99999998752     23333333 56777764

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=96.92  E-value=0.00085  Score=40.10  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+.-+     ..|.|.|++.+|. +.|.|++.+.
T Consensus        70 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~  106 (127)
T 1i3u_A           70 KGRFAVSRDNAKNTVNLQMNSLKPEDT-AVYYCAAKTT  106 (127)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEESC
T ss_pred             CCeEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEEcC
Confidence            468888632     2699999999996 9999999875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=96.92  E-value=0.00081  Score=42.60  Aligned_cols=38  Identities=13%  Similarity=0.186  Sum_probs=29.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.|.|.+|+.+|+ |.|.|++.|.. |.  .+. ...|.|..
T Consensus        53 ~~~L~I~~v~~~D~-G~Y~C~a~n~~-~~--~~~-~~~l~V~~   90 (202)
T 1vca_A           53 TSTLTMNPVSFGNE-HSYLCTATCES-RK--LEK-GIQVEIYS   90 (202)
T ss_dssp             EEEEEESSCCGGGC-SEEEEEEEETT-EE--EEE-EEEEEEEB
T ss_pred             ccEEEECcCCHHHC-EEEEEEEEECC-ce--Eee-EEEEEEEe
Confidence            45799999999996 99999999974 22  333 56777765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.92  E-value=0.0015  Score=43.03  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE--EecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES--QASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~--~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+|+.+|+ |.|+|++.|......  ..+. ...|.|..
T Consensus        73 ~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~~~~~~~~-~~~l~V~~  115 (327)
T 2wng_A           73 DFSISISNITPADA-GTYYCVKFRKGSPDTEFKSGA-GTELSVRA  115 (327)
T ss_dssp             BCCEEECSCCGGGC-EEEEEEEEESSTTCEEEEECC-CEEEEEEB
T ss_pred             eeEEEEccCccccC-eEEEEEeecCCCcceeEeecC-cEEEEEEe
Confidence            56799999999996 999999999754322  2233 55777754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.91  E-value=0.00057  Score=45.06  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=30.3

Q ss_pred             cCCeEEEeecc------cEEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSG------DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsG------eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.++.+..+|      .|.|.+|+.+|..+.|.|.+.|.+-
T Consensus       282 ~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  323 (339)
T 3o4o_C          282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS  323 (339)
T ss_dssp             ECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTE
T ss_pred             ecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccC
Confidence            45677777788      7999999999955999999999863

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=96.89  E-value=0.00079  Score=37.56  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|.|.+|+.+|. |.|.|.+.|..-
T Consensus        64 ~~~L~i~~v~~~D~-G~Y~C~a~N~~g   89 (100)
T 3caf_A           64 HWSLIMESVVPSDK-GNYTCVVENEYG   89 (100)
T ss_dssp             GTEEEECSCCGGGC-EEEEEEEEETTE
T ss_pred             eEEEEEccCCcCCC-EEEEEEEEeCCC
Confidence            45899999999995 999999999763

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=96.89  E-value=0.00085  Score=40.45  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ....+.|.|.+|+.+|. +.|.|.+.|.+-..   +. ...|.|.
T Consensus       161 ~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~---~~-~~~l~V~  200 (201)
T 3s97_C          161 STSGAVLKIFNIQLEDE-GIYECEAENIRGKD---KH-QARIYVQ  200 (201)
T ss_dssp             ETTTTEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEEE
T ss_pred             cCCCCEEEEccCChhhC-EEEEEEEEecCCce---ee-eEEEEEe
Confidence            34578999999999995 99999999986433   22 4466665

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.89  E-value=0.0034  Score=38.08  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=31.5

Q ss_pred             eEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         10 KYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        10 ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ||.|...|   .|.|.+|+.+|+ |.|.|-+-+    ..  .+ .|+|.|.++
T Consensus        62 r~~i~~~g~~~~L~I~~v~~~D~-G~Y~~~~~~----~~--~s-sA~L~V~~~  106 (112)
T 2e6q_A           62 RYRIEQKGLQHRLILHAVKHQDS-GALVGFSCP----GV--QD-SAALTIQES  106 (112)
T ss_dssp             EEEECCBTTEEEEEEESCCSTTC-SEEEEEEET----TE--EE-EEEEEEECS
T ss_pred             EEEEEeCCcEEEEEECCCCHHHC-ccEEEEEEC----Ce--eE-EEEEEEeCC
Confidence            99998888   699999999996 999663222    22  22 579999874

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.89  E-value=0.0018  Score=39.27  Aligned_cols=46  Identities=28%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             CCeEEEee--cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS--SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp--sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.+|.+..  .|  .|.|.+++.+|+ +.|+|++.|.. |..  +. ...|.|..
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~-g~~--~~-~~~l~V~~   98 (197)
T 2j8h_A           49 GLKYRIQEFKGGYHQLIIASVTDDDA-TVYQVRATNQG-GSV--SG-TASLEVEV   98 (197)
T ss_dssp             SSSEEEEEETTTEEEEEECSCCGGGC-SEEEEEEEETT-EEE--EE-EEEEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECcCCHHhC-EEEEEEEEECC-Cce--eE-EEEEEEcC
Confidence            35676653  44  899999999996 99999999873 332  22 44566553

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=96.88  E-value=0.0015  Score=42.03  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +..|.|+||+++|. +.|.|++.+..  .++..... +.+|.|..
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~~~~~~~~~~~~~~g~-gt~L~V~~  113 (203)
T 2bnu_A           58 SGRLNASLDKSSGRSTLYIAASQPGDS-ATYLCAVRPTSGGSYIPTFGR-GTSLIVHP  113 (203)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGC-EEEEEEEEECSSSTTCCEECC-CEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEEeeCCcccC-eEEEEEEEcCcCcceeeeeCC-CEEEEEeC
Confidence            47888752     24699999999996 99999998742  22222222 45777764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=96.86  E-value=0.0018  Score=41.44  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=28.8

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++|+.+..+|   .|.|.+++.+|. |.|+|++.|..
T Consensus        47 ~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~~~n~~   83 (291)
T 2wim_A           47 STQRVVVQKEGVRSRLTIYNANIEDA-GIYRCQATDAK   83 (291)
T ss_dssp             CBTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             CCCcEEEecCCCEEEEEEccCCcccC-EEEEEEEeccc
Confidence            35678777766   899999999996 99999999875

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=96.86  E-value=0.00039  Score=42.93  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ...+.|.|.+|+.+|+ |.|.|++.|....
T Consensus       141 ~~~~~L~i~~v~~~D~-G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          141 WYRASFPIITVTAAHS-GTYRCYSFSSRDP  169 (184)
T ss_dssp             EEEESSSEEEETTCCS-EEEEEEEECTTST
T ss_pred             CceEEEEEccCCccCC-eEEEEEEEeCCCC
Confidence            3578999999999996 9999999998654

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=96.86  E-value=0.00087  Score=38.63  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+||.+..     ...|.|.|++.+|. +.|.|++.+...|
T Consensus        54 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~g   93 (110)
T 2q87_A           54 NGRVSIRDSPANLSFTVTLENLTEEDA-GTYWCGVDTPWLQ   93 (110)
T ss_dssp             ETTEEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEECTTSC
T ss_pred             cCCEEEEEcCcCCEEEEEEccCCHHHC-EEEEEEEecCccC
Confidence            47888753     24799999999996 9999999987543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=96.86  E-value=0.0018  Score=42.13  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      ...++.|.|.+|+.+|+ +.|.|++.|...|+.
T Consensus       158 ~~~~~~L~i~~v~~~d~-G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          158 SGVKDRLIVMNVAEKHR-GNYTCHASYTYLGKQ  189 (315)
T ss_dssp             EEETTEEEESSCCGGGC-EEEEEEEEEEETTEE
T ss_pred             eecCceEEEEeceehhC-cEEEEEEEcCCCCcE
Confidence            45688999999999996 999999995445554

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=96.85  E-value=0.00098  Score=39.33  Aligned_cols=43  Identities=12%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeE
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL   54 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l   54 (66)
                      .+||.+..++   .|.|.+++.+|. +.|.|++.+.  .+....+ +.+|
T Consensus        65 ~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~--~~l~Fg~-g~~~  110 (114)
T 2hp4_A           65 TQRFSGKRLGDTFVLTLSDFRRENE-GYYFCSALSN--SIMYFSH-FVPV  110 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEET--TEEEECC-CEEE
T ss_pred             cccEEEEecCCEEEEEECCCCHHHC-EEEEEEEecC--CcEEECC-CeEe
Confidence            4688776544   599999999996 9999999873  3444443 4343

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=96.83  E-value=0.00052  Score=44.69  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      -|.|.+|+.+|+ |.|+|.|.|.+ |+.  +. ...|.|.+|
T Consensus       265 ~l~i~~v~~~d~-G~Y~C~A~N~~-G~~--~~-~~~l~V~~~  301 (308)
T 4fom_A          265 LHFVHPLTFNYS-GVYICKVTNSL-GQR--SD-QKVIYISDP  301 (308)
T ss_dssp             EECCSCCCSCCC-SEEEEEEEETT-EEE--EE-EEECCEECC
T ss_pred             EEEECCCChhhC-EEEEEEEEeCC-CcE--EE-EEEEEEEcC
Confidence            345789999996 99999999987 432  22 457888774

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=96.83  E-value=0.0015  Score=38.44  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=25.1

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||..+..    +..|.|.||+.+|. +.|.|++.+.
T Consensus        65 ~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~  100 (119)
T 2pnd_A           65 RGRLKVSHKVPGDVSLQINTLQMDDR-NHYTCEVTWQ  100 (119)
T ss_dssp             TTTEEECCSSTTBCCEEESSCCGGGC-EEEEEEEEEE
T ss_pred             cCcEEEccCCCCCEEEEEccCCcccC-EEEEEEEEEC
Confidence            46666542    45699999999996 9999999763

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=96.83  E-value=0.00097  Score=39.82  Aligned_cols=45  Identities=18%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++. .    ....+ +.+|.|...
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~-~----~~fg~-Gt~l~v~~~  116 (121)
T 2xt1_B           67 KGRFTITRDDDKNILYLQMNDLKPEDT-AMYYCKAS-G----SSWGQ-GTQVTVSSH  116 (121)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEET-T----CCCCC-CEEEEEEC-
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEE-e----CEECC-CEEEEEecc
Confidence            47888853     34799999999996 99999997 2    22333 678888753

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=96.83  E-value=0.0013  Score=43.94  Aligned_cols=33  Identities=27%  Similarity=0.586  Sum_probs=27.5

Q ss_pred             CCeEEEe-ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++++.+. .+|.|.|.+++.+|. +.|+|++.|..
T Consensus       148 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~  181 (382)
T 1cs6_A          148 DGRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHI  181 (382)
T ss_dssp             CSSEEECTTTCCEEESSCCGGGC-EEEEEEEEEEE
T ss_pred             CceEEEecCceEEEEEeeCcccC-eeEEEEEEEcc
Confidence            4555554 569999999999996 99999999987

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=96.82  E-value=0.0017  Score=42.32  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CCeEEEe----ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+.    .++.|.|.+|+.+|+ |.|.|++.+...|..  +. ...|.|..
T Consensus        79 ~~r~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~--~~-~~~l~V~~  129 (331)
T 3u83_A           79 RERVEFLRPSFTDGTIRLSRLELEDE-GVYICEFATFPTGNR--ES-QLNLTVMA  129 (331)
T ss_dssp             TTTEEESSCSSSBCCEEECSCCGGGC-EEEEEEEEEETTEEE--EE-EEEEEEEB
T ss_pred             CCceEecccCCCCceEEEcccCcccC-cEEEEEEEecCCCcc--EE-EEEEEEec
Confidence            4677765    478899999999996 999999665444432  22 34555554

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=96.81  E-value=0.0016  Score=37.53  Aligned_cols=32  Identities=9%  Similarity=0.099  Sum_probs=26.4

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..     +..|.|.|++.+|. +.|.|++.+.
T Consensus        60 ~~R~~~~~~~~~~~~sL~I~~~~~~Ds-G~Y~C~v~~~   96 (113)
T 1zox_A           60 KNRVSIRDNQRDFIFTVTMEDLRMSDA-GIYWCGITKG   96 (113)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCS
T ss_pred             CCCEEEEECCcCCEEEEEEccCCHHHC-EEEEEeeEcC
Confidence            46787752     23699999999996 9999999986

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=96.81  E-value=0.0023  Score=44.80  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=34.7

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCc--E-EecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGE--S-QASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge--~-~~S~~~~~l~v~e   58 (66)
                      .+||.+..+     +.|.|.||+.+|+ +.|.|++.+...++  . ..+. ..+|.|.+
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~~~-~~~l~V~~  122 (475)
T 1iga_A           66 RGRVTFTRDTSATTAYMGLSSLRPEDT-AVYYCARDPYGGGKSEFDYWGQ-GTLVTVSS  122 (475)
T ss_pred             CCceEEEEcCCCCeEEEEECCCChhhC-EEEEEEEeccCCCccceeeecC-ceEEEecc
Confidence            578888653     4799999999996 99999999875431  1 2222 45666653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=96.80  E-value=0.0014  Score=41.55  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .|.|.||+.+|+ |.|.|++.+...   ..+. ...|.|.+
T Consensus        83 sL~I~~v~~~D~-G~Y~C~~~~~~~---~~~~-~~~L~V~~  118 (248)
T 3pv7_A           83 SLRLPGIQLEEA-GEYRCEVVVTPL---KAQG-TVQLEVVA  118 (248)
T ss_dssp             CEEESSCCGGGC-EEEEEEEEETTE---EEEE-EEEEEEEB
T ss_pred             EEEeCCCCHHHC-eEEEEEEEeCCc---ccee-EEEEEEec
Confidence            399999999996 999999988642   2222 44566654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=96.80  E-value=0.0014  Score=46.41  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             CCeEEEee---cc--cEEEeecCCCCCCcceeEEeeccccCcEEec--ccceeEEEecc
Q psy10521          8 GGKYVVLS---SG--DLYVFNATPNDGYKSYRCRTVNKITGESQAS--VFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp---sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S--~~~~~l~v~ep   59 (66)
                      ++|+.+.+   +|  .|.|.+|+.+|. +.|+|++.|.  |+...+  .....|.|.++
T Consensus       276 ~~~~~~~~~~~~g~~~L~i~~v~~~d~-G~Y~C~a~n~--g~~~~~~~~~~~~l~V~~~  331 (585)
T 2ocw_A          276 EGRILLNPQDKDGSFSVVITGLRKEDA-GRYLCGAHSD--GQLQEGSPIQAWQLFVNEE  331 (585)
T ss_pred             CCceEeeccCCCcEEEEEEccCChhhC-EEEEEEEEcC--CCccccCceeeEEEEEecc
Confidence            56787765   67  799999999996 9999999995  444321  12456777653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=96.80  E-value=0.0006  Score=43.69  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      +.+|.+..++     .|.|.+|+.+|+ |.|.|++.|
T Consensus        47 ~~~~~~~~~~~~g~~~L~I~~v~~~D~-G~Y~C~a~N   82 (207)
T 3rbs_A           47 GPKYKMHIDRNTGIIEMFMEKLQDEDE-GTYTFQLQD   82 (207)
T ss_dssp             SSSCEEEECTTTCEEEEEESCCCGGGC-EEEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEEC
Confidence            4566665443     599999999996 999999888

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=96.79  E-value=0.0023  Score=42.55  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.  +   +..|.|.+++.+|. +.|.|++...-.++..... +.+|.|.+.
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~l~~~Ds-G~Y~Cav~~~~~~~~~fG~-GT~L~V~~~  112 (205)
T 3qjh_A           58 NGRLKSAFDSKERYSTLHIRDAQLEDS-GTYFCAAEASNTNKVVFGT-GTRLQVLPN  112 (205)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEETTTCCEEEBC-CEEEEEECC
T ss_pred             CCCEEEEEcCCCCEEEEEEeccccccC-eEEEEEEEcCCCCccccCC-CEEEEEeCc
Confidence            4678775  2   34699999999996 9999999843345555554 778988753

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.79  E-value=0.0012  Score=39.35  Aligned_cols=38  Identities=13%  Similarity=0.154  Sum_probs=28.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .++.|.|.+++.+|. |.|.|.+.|... . ..|. ...|.|
T Consensus       132 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~g-~-~~s~-~~~l~V  169 (170)
T 3ry4_A          132 LDPTFSIPQANHSHS-GDYHCTGNIGYT-L-FSSK-PVTITV  169 (170)
T ss_dssp             SCCEEEESSCCGGGC-EEEEEEEEETTE-E-EECC-CEEEEE
T ss_pred             CCCeEEEEeccccCC-EEEEEEEEeCcC-c-cccc-cEEEEE
Confidence            478899999999996 999999999863 2 2343 555555

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=96.79  E-value=0.0021  Score=38.38  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++....   ......-. +.+|.|+
T Consensus        66 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fG~-GT~l~V~  121 (122)
T 3nn8_A           66 KSRATLTVDKTSSTVYLELRSLTSEDS-SVYYCARRGGSSHYYAMDYWGQ-GTTVTVS  121 (122)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECCTTTTTCEEEECS-CEEEEEC
T ss_pred             cCCEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEEecCCCccceeEECC-CEEEEec
Confidence            478888532     3599999999996 99999998631   23333444 7788875

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=96.79  E-value=0.0021  Score=38.95  Aligned_cols=43  Identities=12%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             EEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        12 ~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .....+.|.|.+|+.+|. |.|.|.+.|...   ..+. ...|.|.+.
T Consensus       138 ~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~~---~~~~-~~~l~V~~~  180 (184)
T 2ny1_B          138 NIQGGKTLSVSQLELQDS-GTWTCTVLQNQK---KVEF-KIDIVVLAF  180 (184)
T ss_dssp             EEEESSEEEESSCCGGGC-EEEEEEEEETTE---EEEE-EEEEEEECC
T ss_pred             cccCceEEEEecCCcCCC-eEEEEEEEECCc---eEEE-EEEEEEEec
Confidence            345789999999999996 999999987432   2333 557777763

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=96.78  E-value=0.0012  Score=44.93  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+||.+..+|   .|.|.+|+.+|+ |.|+|++.|...
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~   99 (438)
T 1qgc_4           63 PDRFSGSGSRTDFTLTIDPVEADDV-ATYYCQQSNEVP   99 (438)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSTT
T ss_pred             cCcEEEEccCCcEEEEeCCCcCcCC-eeEEEEEecCCC
Confidence            4688876543   699999999996 999999999753

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=96.78  E-value=0.001  Score=47.06  Aligned_cols=38  Identities=18%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ...++.|.|.+|+.+|. |.|.|.+.|.      .+. .+.|.|.+
T Consensus       286 ~~~~~~L~I~~v~~~D~-G~Y~C~A~N~------~~~-~~~L~V~~  323 (423)
T 3qs7_E          286 MIRILFAFVSSVARNDT-GYYTCSSSKH------PSQ-SALVTIVE  323 (423)
T ss_dssp             EEEEEEEEESSCCTTTC-EEEEEEETTE------EEE-EEEEEEES
T ss_pred             eEEEEEEEEeecCHHHC-EEEEEEEecC------CCc-eEEEEEEe
Confidence            34457899999999996 9999999998      222 44666654

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=96.77  E-value=0.00075  Score=40.68  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=31.6

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  ++   ..|.|.|++.+|. +.|.|++.+....   .+ .+.+|+|.+
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-G~Y~C~~~~~~~~---~~-~~t~l~v~~  115 (126)
T 2h32_A           65 PPRFSGSKDVARNRGYLSISELQPEDE-AMYYCAMGARSSE---KE-EREREWEEE  115 (126)
T ss_dssp             CTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECSCCC---CC-CTTCC----
T ss_pred             CCCEEEEEeCCCCeEEEEECCCChhHC-EEEEEEEEcCCCC---cc-eeEEEeecc
Confidence            4688886  32   3699999999996 9999999875533   23 377888864

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=96.76  E-value=0.00079  Score=42.08  Aligned_cols=39  Identities=31%  Similarity=0.390  Sum_probs=28.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++.|.|.+++.+|. |.|+|++.|..- ..  +. ...|.|.+|
T Consensus       181 ~~~L~i~~~~~~d~-G~Y~C~a~N~~g-~~--~~-~~~l~V~~~  219 (241)
T 3grw_A          181 DVRLRLANVSERDG-GEYLCRATNFIG-VA--EK-AFWLSVHGP  219 (241)
T ss_dssp             EEEEEECSCCGGGC-EEEEEEEECSSC-EE--EE-EEEEEC---
T ss_pred             ceEEEECcCCcccC-cEEEEEEecCcc-eE--EE-EEEEEecCC
Confidence            56799999999995 999999999763 32  22 457777664

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=96.75  E-value=0.0005  Score=44.26  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=20.6

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.|.|.+++.+|+ |.|+|++.|..
T Consensus        51 ~~L~i~~~~~~D~-G~Y~C~a~n~~   74 (289)
T 3mjg_X           51 SVLTLTNLTGLDT-GEYFCTHNDSR   74 (289)
T ss_dssp             EEEEECSCCGGGC-EEEEEECCC--
T ss_pred             EEEEEccCChhhC-EEEEEEEcccC
Confidence            5899999999996 99999999987

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=96.75  E-value=0.0021  Score=46.23  Aligned_cols=48  Identities=19%  Similarity=0.457  Sum_probs=34.4

Q ss_pred             cCCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          7 VGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         7 ~~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.+|.+...   +.|.|.+|+.+|. |.|.|.+.|.+-...   . .+.|.|..|
T Consensus       427 ~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~~G~~~---~-~~~l~v~~~  477 (570)
T 3b43_A          427 SGKKYKIMSENFLTSIHILNVDSADI-GEYQCKASNDVGSDT---C-VGSITLKAP  477 (570)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGGGC-EEEEEEEECSSCEEE---E-EEEEEECCC
T ss_pred             CCCCEEEEEcCCEEEEEECCCChhhC-EEEEEEEEECCCeEE---E-EEEEEeccC
Confidence            3567888765   4799999999996 999999999874321   1 335666543

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=96.74  E-value=0.0025  Score=41.99  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=25.7

Q ss_pred             CCeEEEeeccc-----EEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .+||.+..++.     |.|.||+.+|. +.|.|++.
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~  122 (267)
T 3u1s_H           88 QGRVTITRDSGASTVYMELRGLTADDT-AIYYCLTG  122 (267)
T ss_dssp             TTTEEEEECGGGCCEEEEECSCCGGGC-EEEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEC
Confidence            47898876544     99999999996 99999996

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.74  E-value=0.00065  Score=44.79  Aligned_cols=41  Identities=17%  Similarity=0.112  Sum_probs=28.9

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+|+.+|+ |.|+|++.|.. +....|. ...|.|++
T Consensus        58 ~~~~L~I~~v~~~Ds-G~Y~C~~~~~~-~~s~~S~-~~~L~V~~   98 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMA-GQYSCIYRVGE-LWSEPSN-LLDLVVTE   98 (242)
T ss_dssp             CEEEEEECSCCGGGC-EEEEEEEEETT-EECCCCC-CEEEEEEC
T ss_pred             ceeEEEecCCCcccC-eEEEEEEecCC-ccccCCc-ceEEEeec
Confidence            467899999999996 99999997642 1111233 56676664

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=96.73  E-value=0.00033  Score=44.04  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..+|   .|.|.+|+.+|+ |.|.|++.|..
T Consensus        81 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~  116 (233)
T 3bqu_C           81 PSRFSSSGYGTDFVFTIENMLSEDV-ADYYCLQSDNL  116 (233)
T ss_dssp             CTTCCCCEEEEEEEEC-----CCCC-SEEEEEECSSS
T ss_pred             CccEEeeccCCEEEEEECCCCHHHC-EEEEEEEecCC
Confidence            3566665444   799999999996 99999998864

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=96.73  E-value=0.0021  Score=41.03  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=28.2

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .+++.+..    ++.|.|.+++.+|+ |.|+|++.|...+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~~~n~~g~   87 (291)
T 1qz1_A           49 QQRISVVWNDDDSSTLTIYNANIDDA-GIYKCVVTAEDGT   87 (291)
T ss_dssp             CSSEEEEEEETTEEEEEECSCCGGGC-EEEEEEEECTTSC
T ss_pred             CceEEEEEcCCCeEEEEEecCCCCCC-EEEEEEEEcCCCC
Confidence            35666653    57899999999996 9999999998743

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=96.72  E-value=0.0044  Score=38.32  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             cCCeEEEee--c--ccEEEeecCC-CCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLS--S--GDLYVFNATP-NDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilp--s--GeL~I~nv~~-~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+||.+..  +  ..|.|.+++. +|. +.|+|++.|......  +. ...|.|..
T Consensus        50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~-G~Y~C~~~n~~g~~~--~~-~~~l~V~~  102 (212)
T 2yd1_A           50 TQSRYTVLEQPGGISILRIEPVRAGRDD-APYECVAENGVGDAV--SA-DATLTIYE  102 (212)
T ss_dssp             TSTTEEEEEETTTEEEEEESSCCTTTTC-SEEEEEEECSSSCEE--EE-EEEEEEEC
T ss_pred             CcceeEEEEcCCCeEEEEEEecCCCCcC-ceEEEEEEeCCCCeE--Ee-eEEEEEec
Confidence            356777653  3  3799999999 886 999999998764322  22 34565554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=96.71  E-value=0.0026  Score=42.01  Aligned_cols=40  Identities=20%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ...+.|.|.+|+.+|+ |.|+|++.|.. ++...   ...|.|.+
T Consensus        76 ~~~~~L~i~~~~~~D~-G~Y~C~a~n~~-~~~~~---~~~l~V~~  115 (349)
T 4dep_C           76 KEKDVLWFRPTLLNDT-GNYTCMLRNTT-YCSKV---AFPLEVVQ  115 (349)
T ss_dssp             EETTEEEESSCCGGGC-EEEEEEEECSS-CEEEE---EEEEEEEC
T ss_pred             ecCCEEEEccCChhhC-EEEEEEEecCC-ceEEE---EEEEEEec
Confidence            4578999999999996 99999999863 33332   34666665

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=96.70  E-value=0.0015  Score=40.22  Aligned_cols=50  Identities=14%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeeccc---------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNKI---------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~l---------Tge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-  +   -.|.|.|++.+|. +.|.|++.+.-         ......-. +.+|.|.+.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~~~~~fG~-GT~l~V~~~  128 (136)
T 1zvy_A           65 KGRFTISQDKAKNMAYLRMDSVKSEDT-AIYTCGATRKYVPVRFALDQSSYDYWGQ-GTQVTVSSR  128 (136)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECSSCCCGGGTTCGGGCSEECC-CEEEEC---
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhHC-EEEEEEEEeCCccccccccccccceECC-CEEEEEccC
Confidence            47888863  2   2599999999996 99999998752         23333343 778888653

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=96.70  E-value=0.0013  Score=39.68  Aligned_cols=49  Identities=12%  Similarity=0.027  Sum_probs=33.5

Q ss_pred             Ce-EEEee---cccEEEeecCCCCCCcceeEEeeccccCcEE--ecccceeEEEecc
Q psy10521          9 GK-YVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQ--ASVFQTRLSITGF   59 (66)
Q Consensus         9 ~r-y~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~--~S~~~~~l~v~ep   59 (66)
                      +| |....   +-.|.|.|++.+|. +.|.|++.........  ..+ +.+|.|.+.
T Consensus        65 ~r~f~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-GT~L~V~~~  119 (130)
T 3osk_A           65 DSICTGTSSGNQVNLTIQGLRAMDT-GLYICKVELMYPPPYYLGIGN-GTQIYVIDP  119 (130)
T ss_dssp             CCSEEEEEETTEEEEEECSCCGGGC-EEEEEEEEEEESSSCEEEECC-CEEEECCCC
T ss_pred             ceEEeccCCCCEEEEEEcCCChHHC-EEEEEEEEeccCCchhcccCC-CEEEEEecc
Confidence            44 55443   33599999999996 9999999765322222  333 789998864

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=96.70  E-value=0.0028  Score=40.68  Aligned_cols=49  Identities=18%  Similarity=0.056  Sum_probs=34.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +..|.|.+++++|. +.|.|++.+..  .+...... +.+|.|..
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~g~-gt~L~V~~  114 (194)
T 1lp9_E           59 HQGFHATLHKSSSSFHLQKSSAQLSDS-ALYYCALFLASSSFSKLVFGQ-GTSLSVVP  114 (194)
T ss_dssp             CSSCEECCBGGGTBCCEEESSCCGGGC-EEEEEEEEECSSSSCEEEECC-CEEEEEEC
T ss_pred             CCCeEEEecCCCCEEEEEEcccCcccC-eeEEEEEecccCCcceeeecc-CceEEecC
Confidence            57888852     35799999999996 99999998731  22333333 56777764

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=96.70  E-value=0.0029  Score=41.18  Aligned_cols=49  Identities=20%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +..|.|+|++++|. +.|.|++.+.. ........ +.+|.|..
T Consensus        63 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~g~-gt~L~V~~  117 (211)
T 2ak4_D           63 SGRYSWNFQKSTSSFNFTITASQVVDS-AVYFCALSGFYNTDKLIFGT-GTRLQVFP  117 (211)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGC-EEEEEEEECSBTTSCCEECC-CEEEEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEECccccccC-ceEEEEEEcCCCcceeeECC-CEEEEEeC
Confidence            4788875  2   23799999999996 99999998742 12222222 55777763

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=96.70  E-value=0.0024  Score=40.57  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..++.|.|.+|+.+|. |.|.|.+.|..- .  .+. ...|.|
T Consensus       198 ~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g-~--~~~-~~~l~V  235 (268)
T 3mj6_A          198 RNDGSIKLQTVKESDQ-GIYTCSIYVGKL-E--SRK-TIVLHV  235 (268)
T ss_dssp             GTBCCEEECSCCGGGC-EEEEEEEEETTE-E--EEE-EEEEEE
T ss_pred             CCeEEEEECcCChhhC-eEEEEEEEcCCc-e--EEE-EEEEEE
Confidence            3478999999999996 999999999432 2  222 345666

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.70  E-value=0.0035  Score=41.06  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .|.|.+|+.+|. |.|.|.+.|.+- ....   ...|.|.+.
T Consensus       292 ~L~i~~v~~~d~-G~Y~C~a~N~~G-~~~~---~~~l~V~~~  328 (334)
T 1ry7_B          292 VLSLHNVTFEDA-GEYTCLAGNSIG-FSHH---SAWLVVLPA  328 (334)
T ss_dssp             CEEECSCCTTSC-SEEEEEEEESSC-CEEE---EEEEEEECS
T ss_pred             EEEEccCCHHHC-EEEEEEEeCCCC-eEEE---EEEEEEEEC
Confidence            799999999996 999999999864 3222   457888764

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=96.70  E-value=0.0013  Score=43.34  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc--EEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE--SQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge--~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.+|+.+|+ |.|+|++.|.....  ...|. ...|.|.+
T Consensus        72 ~~~~L~I~~v~~~D~-G~Y~C~a~~~~~~~~~~~~s~-~~~l~V~~  115 (316)
T 3vh8_G           72 FQESFNMSPVTTAHA-GNYTCRGSHPHSPTGWSAPSN-PVVIMVTG  115 (316)
T ss_dssp             BSSCEEECSCCGGGC-EEEEEEEBCSSSSSSBCCCCC-CEEEEEEC
T ss_pred             ceEEEEECCCCcccC-eEEEEEEEcCCCCcceecCCC-cEEEEEec
Confidence            478999999999996 99999998765422  22232 45666654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=96.69  E-value=0.0013  Score=41.34  Aligned_cols=35  Identities=14%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             EEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         20 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        20 ~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      -|.+|+.+|. +.|.|++.|++.++.+    .+.|.|.||
T Consensus       180 s~l~v~~~d~-G~YtC~a~N~~g~~~~----~~~v~v~ep  214 (226)
T 4f80_A          180 ASVIMRGSSG-EGVSCTIRSSLLGLEK----TASISIADP  214 (226)
T ss_dssp             EEEEECC-----CEEEEEEETTTTEEE----EEEECCCTT
T ss_pred             EEEEechhcC-cEEEEEEEeCCCCeEE----EEEEEECCC
Confidence            3568899995 9999999999987644    347778775

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.00096  Score=42.96  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccc
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++||.+...|   .|.|.+++.+|. |.|+|++.|..
T Consensus        45 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~~~n~~   81 (312)
T 2y23_A           45 DSPRLEVESKGNKTKMTFKDLGMDDL-GIYSCDVTDTD   81 (312)
T ss_dssp             TCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEESSSC
T ss_pred             CCCCEEEEEeCCEEEEEECcCCccCC-EEEEEEEEeCC
Confidence            35688887766   899999999996 99999999865

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.68  E-value=0.00096  Score=41.52  Aligned_cols=29  Identities=10%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..+.|.|.+|+.+|+ |.|.|++.|.....
T Consensus       151 ~~~~L~i~~v~~~D~-G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPR-GTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCE-EEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcC-EEEEEEEEcCcCCc
Confidence            478899999999996 99999999987544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=96.67  E-value=0.00084  Score=41.54  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=22.6

Q ss_pred             ccEEEeecCCCCCCcceeEEeecccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|.|.+|+.+|+ |.|.|.+.|...
T Consensus       156 ~~L~I~~v~~~D~-G~Y~C~a~n~~~  180 (196)
T 2d3v_A          156 ALFPVGPVTPSHR-WMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECCCCBTTBC-EEEEEEEEETTE
T ss_pred             eEEEeeecCcccC-eeEEEEEEccCC
Confidence            7999999999996 999999998753

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.0016  Score=37.70  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=29.7

Q ss_pred             CCeEEEe-ecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il-psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++||.+. ..|   .|.|.+|+.+|. |.|.|.+     |+...   .++|.|.++
T Consensus        57 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~-----g~~~~---~~~L~V~~~  103 (115)
T 2cr6_A           57 NELNEIDAQPGGYHVLTLRQLALKDS-GTIYFEA-----GDQRA---SAALRVTEK  103 (115)
T ss_dssp             SSSCCBCCBTTTBCCBEECSCCTTTC-EEEEEEE-----TTEEC---CEEEEEECC
T ss_pred             CCcEEEEEcCCCEEEEEEcCCChhhC-EEEEEEE-----CCeeE---EEEEEEECC
Confidence            3455554 223   699999999996 9999993     44322   468888764

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=96.66  E-value=0.0032  Score=39.14  Aligned_cols=49  Identities=18%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc---------------cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI---------------TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l---------------Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+..               ......-. +.+|.|.+
T Consensus        65 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~c~~~~~~~~~~~~~fG~-GT~l~V~~  133 (148)
T 1jtp_A           65 KGRFTISQDNAKNTVYLLMNSLEPEDT-AIYYCAADSTIYASYYECGHGLSTGGYGYDSWGQ-GTQVTVSS  133 (148)
T ss_dssp             TTTEEEEECCTTSEEEEEECSCCGGGC-EEEEEEEECCCCSSCCCHHHHHHTTTTTCCEECC-CEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEECcCChhHC-EEEEEEEEcCcccccccccccccccccccCcCCC-CEEEEECC
Confidence            468888632     2699999999996 99999998741               12333333 78999976

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=96.65  E-value=0.00022  Score=45.41  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=27.3

Q ss_pred             eEEEeecccEEEeec-CCCCCCcceeEEeecccc
Q psy10521         10 KYVVLSSGDLYVFNA-TPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        10 ry~ilpsGeL~I~nv-~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.+...+|.|.|.+| +.+|. |.|+|.+.|...
T Consensus       159 ~~~~~~~~~L~I~~v~~~~D~-G~Y~C~A~N~~g  191 (204)
T 1sy6_A          159 KNIGSDEDHLSLKEFSELEQS-GYYVCYPRGSKP  191 (204)
T ss_dssp             TTEEEETTEEEETTCCHHHHC-EEEEEEETTSCG
T ss_pred             ceEecCCCEEEEeeCCccccC-EEEEEEeccCCC
Confidence            344457999999999 99995 999999999876

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=96.63  E-value=0.0034  Score=37.73  Aligned_cols=33  Identities=12%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+.  ++   -.|.|.||+.+|. +.|.|++....
T Consensus        70 ~~R~~~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~v~~~~  107 (122)
T 1hkf_A           70 TSRFTIWDDPDAGFFTVTMTDLREEDS-GHYWCRIYRPS  107 (122)
T ss_dssp             STTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECTT
T ss_pred             cCcEEEEEcCcCCEEEEEEeCCCHHHC-EEEEEEEEcCC
Confidence            5788873  32   2599999999996 99999998764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=96.62  E-value=0.0026  Score=45.04  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             CCeEEEeecc------cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG------DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG------eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+..+|      .|.|.+|+.+|+ |.|+|++.|....   .+. ...|.|.+
T Consensus       170 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~---~~~-~~~l~V~~  221 (585)
T 2ocw_A          170 TGRIRLDIQGTGQLLFSVVINQLRLSDA-GQYLCQAGDDSNS---NKK-NADLQVLK  221 (585)
T ss_pred             cCcEEEEeccCCCcEEEEEEccCChhHC-eEEEEEeccCCcc---ccc-eEEEEEcc
Confidence            5788888877      599999999996 9999999976532   222 45666665

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=96.61  E-value=0.0021  Score=41.01  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+.|.|.+|+.+|. |.|.|.+.|.+ |+...   .+.|.+.++
T Consensus       243 ~~~~L~i~~v~~~d~-G~Y~C~a~N~~-G~~~~---s~~L~~~~~  282 (289)
T 3ejj_X          243 KVRALSLNAVDFQDA-GIYSCVASNDV-GTRTA---TMNFQVVES  282 (289)
T ss_dssp             EEEEEEESSCCSSSC-EEEEEEEECSS-CEEEE---EEEEECC--
T ss_pred             eeEEEEEEeecccCC-EEEEEEEEcCC-CCccc---cEEEEEEec
Confidence            367899999999995 99999999986 33222   346666543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=96.61  E-value=0.0016  Score=39.58  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      +|+-+...++.|.|.+++.+|. |.|+|++.|
T Consensus        45 ~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n   75 (175)
T 1fnl_A           45 NESLISSQASSYFIDAATVNDS-GEYRCQTNL   75 (175)
T ss_dssp             TTEEEESSCSEEEESSCCGGGC-EEEEEECSS
T ss_pred             CCEEccCCceEEEEeCCCcccC-EEEEEEeeC
Confidence            4555555688999999999996 999999997

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=96.60  E-value=0.0014  Score=40.33  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.|.|.+++.+|. +.|+|++.|.....   +. ...|.|.++
T Consensus       184 ~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~---~~-~~~l~V~~~  222 (231)
T 3ojm_B          184 AEVLALFNVTEADA-GEYICKVSNYIGQA---NQ-SAWLTVLPK  222 (231)
T ss_dssp             TTEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEEECC
T ss_pred             ccEEEEecCCHHHC-eEEEEEEEeccceE---ee-EEEEEEecC
Confidence            35699999999995 99999999986433   22 457777653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=96.60  E-value=0.0026  Score=40.99  Aligned_cols=46  Identities=28%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             CCeEEEee--cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS--SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp--sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.+|.+..  .|  .|.|.+|+.+|+ +.|+|++.|.. |.  .+. ...|.|..
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~-g~--~~~-~~~l~V~~   98 (305)
T 2nzi_A           49 GLKYRIQEFKGGYHQLIIASVTDDDA-TVYQVRATNQG-GS--VSG-TASLEVEV   98 (305)
T ss_dssp             SSSEEEEEETTTEEEEEESSCCGGGC-SEEEEEEEETT-EE--EEE-EEEEEECE
T ss_pred             CCeEEEEECCCCEEEEEEccCChhhC-eEEEEEEEcCC-CC--ccc-eEEEEEec
Confidence            34666643  34  899999999996 99999999874 33  232 45666654

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=96.58  E-value=0.0011  Score=40.63  Aligned_cols=36  Identities=28%  Similarity=0.485  Sum_probs=28.0

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+||.+.-     +..|.|.|++.+|. +.|.|++.+..-.+
T Consensus        52 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~~~~~~   92 (126)
T 3moq_A           52 GGRYVETVNKGSKSFSLRISDLRVEDS-GTYKCQAFYVFFAE   92 (126)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEEEEETT
T ss_pred             CCcEEEEEeCCCCEEEEEECcCChHhC-EEEEEEEEEcCCCC
Confidence            46777632     34699999999996 99999999876543

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=96.58  E-value=0.0036  Score=37.15  Aligned_cols=48  Identities=13%  Similarity=0.100  Sum_probs=34.9

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~   57 (66)
                      .+||.+.-     +-.|.|.+++.+|. +.|.|++...-  .++...-. +.+|.|.
T Consensus        65 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fG~-GT~l~V~  119 (120)
T 3iy0_H           65 GGAAALAAAAAGGTAYMGLGGLSSEDS-GVYFCARRGFAGAASFAYWGQ-GTLVTAG  119 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEESSSSCCCEEEECC-CEEEEEC
T ss_pred             cCcEEEEEecCCCEEEEEECCCChHHC-EEEEEEEEeCCCCcccceECC-CEEEEec
Confidence            47888753     23599999999996 99999987641  24444454 7788875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=96.57  E-value=0.00084  Score=43.24  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=26.1

Q ss_pred             CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +++|.+.. .+.|.|.+|+.+|. |.|.|.+.|.+-..
T Consensus       266 ~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~G~~  302 (312)
T 2y23_A          266 DEKHDFKDGICTLLITEFSKKDA-GIYEVILKDDRGKD  302 (312)
T ss_dssp             ECCC----CEEEEEECSCSGGGC-EEEEEEEESTTCCE
T ss_pred             CCcEEEECCEEEEEECcCCHHHC-EEEEEEEEcCCCce
Confidence            34555543 36999999999996 99999999997543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.57  E-value=0.0034  Score=41.80  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +|+.+ ..|.|.|.+|+.+|. |.|.|.+.|..-
T Consensus       353 ~~~~~-~~~~L~i~~~~~~d~-G~Y~C~a~N~~G  384 (395)
T 1bih_A          353 GRATV-TDSGLVIKGVKNGDK-GYYGCRATNEHG  384 (395)
T ss_dssp             SSEEE-ETTEEEESSCCSTTC-EEEEEEEEETTE
T ss_pred             CceEE-ECCEEEEeeCCcccC-EEEEEEEEccCC
Confidence            46655 467999999999996 999999999864

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=96.56  E-value=0.0026  Score=38.21  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=23.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ++.|.|.||+.+|+ |.|.|++.+...+.
T Consensus        78 ~~sL~I~~v~~~D~-G~Y~C~~~~~~~~~  105 (218)
T 4frw_A           78 DGSVLLRNAVQADE-GEYECRVSTFPAGS  105 (218)
T ss_dssp             BCCEEESSCCGGGC-EEEEEEEEEETTEE
T ss_pred             eEEEEEeeccHHHC-CceeEEEEeccCce
Confidence            45699999999996 99999998765544

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=96.56  E-value=0.0022  Score=38.76  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=22.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..|.|.+++++|+ +.|.|++.|+.-.+
T Consensus       181 s~L~i~~~~~~d~-g~YtC~a~N~~~~~  207 (225)
T 4fmk_A          181 SRYSLVPVGRADG-VKVTCRVEHESFEE  207 (225)
T ss_dssp             EEEEECCCGGGTT-CEEEEEEECTTCSS
T ss_pred             EEEEEeeCCHHHC-CEEEEEEEcCCCCe
Confidence            3699999999996 99999999985444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=96.54  E-value=0.0024  Score=40.03  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ++.|.|.||+.+|+ |.|.|++.|.
T Consensus        82 ~~~L~I~~v~~~D~-G~Y~C~a~n~  105 (226)
T 4f80_A           82 KAALRIHNVTASDS-GKYLCYFQDG  105 (226)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEEET
T ss_pred             eEEEEEeeCchHHC-eeEEEEEECC
Confidence            34699999999996 9999999985

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=96.54  E-value=0.0028  Score=37.97  Aligned_cols=47  Identities=11%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             cCCeEEEeec---ccEEEeecCC-CCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSS---GDLYVFNATP-NDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilps---GeL~I~nv~~-~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.++.+...   +.|.|.+++. +|. +.|+|++.|.+-..   +. ...|.|.+
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~n~~g~~---~~-~~~l~V~~  196 (197)
T 3lcy_A          146 NSENITIENTEHYTHLVMKNVQRKTHA-GKYKVQLSNVFGTV---DA-ILDVEIQD  196 (197)
T ss_dssp             CCSSEEEEECSSEEEEEESSCCHHHHC-EEEEEEEECSSCEE---EE-EEEEEEEC
T ss_pred             CCCceEEEEcCCEEEEEEccccchhhC-ceEEEEEEcCcCce---EE-EEEEEEec
Confidence            3456666554   6799999996 675 99999999986433   22 34566653

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=96.53  E-value=0.0021  Score=46.14  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=27.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+..     +..|.|.||+.+|. +.|.|++.+..
T Consensus        66 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~~~~~~  103 (512)
T 1zvo_C           66 RGRVTISVDTSRNQFSLNLRSMSAADT-AMYYCARGNPP  103 (512)
T ss_pred             CCceEEEecCCCCEEEEEECcCCHHHC-EEEEEEEECCC
Confidence            47888874     25799999999996 99999998763

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=95.54  E-value=0.0004  Score=45.25  Aligned_cols=46  Identities=17%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..     +..|.|.+|+.+|. +.|.|++.+   ++..... +.+|.|..
T Consensus        58 ~~R~s~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~~---~~~~fg~-gT~L~V~~  108 (185)
T 3c6l_A           58 DGRFTIFFNKREKKFSLHIADSQPGDS-ATYFCAASD---NRIFFGD-GTQLVVKP  108 (185)
Confidence            56888752     44799999999996 999999986   2222233 55777754

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=96.52  E-value=0.00087  Score=41.93  Aligned_cols=26  Identities=19%  Similarity=0.186  Sum_probs=23.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .|.|.|.+++.+|+ |.|.|.|.|.+=
T Consensus        62 ~~~L~i~~~~~~D~-G~YtC~A~N~~G   87 (126)
T 1he7_A           62 HGCLRLNQPTHVNN-GNYTLLAANPFG   87 (126)
T ss_dssp             EEEEEEESCCGGGC-EEEEEEEEETTE
T ss_pred             ceEEEECcCCCCCC-EEEEEEEEECCC
Confidence            47899999999996 999999999983

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=96.52  E-value=0.0018  Score=42.63  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=24.2

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ..+.|.|.+|+.+|+ |.|+|.+.|...
T Consensus       172 ~~~~L~i~~v~~~D~-G~Y~C~a~n~~g  198 (316)
T 3vh8_G          172 SKANFSIGPMMLALA-GTYRCYGSVTHT  198 (316)
T ss_dssp             EEEEEEECSCCGGGC-EEEEEEEECTTC
T ss_pred             ceEEEEECCCChhhC-ceEEEEEecCCC
Confidence            467899999999996 999999999865

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=96.51  E-value=0.005  Score=40.41  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +-.|.|.|++.+|. +.|.|++.+. .+...... +.+|.|..
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~~~~~-~~~~~fg~-gt~L~V~~  110 (215)
T 1oga_D           58 LKRLTFQFGDARKDSSLHITAAQPGDT-GLYLCAGAGS-QGNLIFGK-GTKLSVKP  110 (215)
T ss_dssp             ETTEEEEECTTSSEEEEEESSCCGGGC-EEEEEEEECT-TSSEEECC-CEEEEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEEccCCcccC-ceEEEEEecc-cccceeCC-CEEEEEec
Confidence            47888752     23699999999997 9999999864 22223332 55677753

>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H

Probab=96.51  E-value=0.0037  Score=39.33  Aligned_cols=49  Identities=12%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc------cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI------TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l------Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-+     -.|.|.|++.+|. +.|.|++.+..      ..+...-. +.+|.|.+
T Consensus        65 ~~Rfs~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~~~~~~~~~~~~~fG~-GT~L~V~~  124 (153)
T 2vyr_E           65 KGRFTISRDNSKNTLYLQMNSLRTEDT-AVYYCAKPWYPFMASKGSEFDYWGQ-GTLVTVSS  124 (153)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECSSTTCCSCCCTTCEECS-CEEEEECC
T ss_pred             CCcEEEEEcCCCCEEEEEECcCCHHHC-EEEEEEEEecccccccccccceECC-CEEEEEcC
Confidence            478988632     2599999999996 99999998642      23333333 67888865

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=96.51  E-value=0.0058  Score=37.47  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ...+.|.|.+++.+|+ |.|+|++.|.....   +. ...|.|.+
T Consensus        73 ~~~~~L~i~~~~~~d~-G~Y~C~~~n~~~~~---~~-~~~l~V~~  112 (231)
T 3ojm_B           73 NQHWSLIMESVVPSDK-GNYTCVVENEYGSI---NH-TYHLDVVE  112 (231)
T ss_dssp             GGGTEEEECSCCGGGC-EEEEEEEEETTEEE---EE-EEEEEEEC
T ss_pred             cCcceEEEecCCcccC-EEEEEEEecccCcc---cc-cEEEEEEc
Confidence            3456799999999996 99999999875422   22 34566654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=96.50  E-value=0.0068  Score=37.73  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             EEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        12 ~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      ....++.|.|.+++.+|. |.|+|++.|...
T Consensus        67 ~~~~~~~L~i~~v~~~d~-G~Y~C~~~~~~~   96 (241)
T 3grw_A           67 LRHQQWSLVMESVVPSDR-GNYTCVVENKFG   96 (241)
T ss_dssp             EEGGGTEEEECSCCGGGC-EEEEEEEEETTE
T ss_pred             eeccceEEEEEeCCcccC-EEEEEEEeecCC
Confidence            344577899999999996 999999998643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=96.49  E-value=0.0018  Score=42.08  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=28.4

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .++....+|.|.|.+++.+|. +.|+|++.|..
T Consensus       156 ~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  187 (304)
T 2yd9_A          156 GRIKQLRSGALQIESSEETDQ-GKYECVATNSA  187 (304)
T ss_dssp             TSEEECTTSCEEECSCCGGGC-EEEEEEEEETT
T ss_pred             ceEEeCCCeEEEEccCCcccC-EEEEEEEEeCC
Confidence            467778899999999999996 99999999975

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.46  E-value=0.0027  Score=42.26  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCeEEEeecccEEEeecCCCCCCc---ceeEEeeccccCc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYK---SYRCRTVNKITGE   44 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~---~Y~C~~~~~lTge   44 (66)
                      +.++.+.++|.|.|.+++.+|. +   .|+|++.|.....
T Consensus       152 ~~~~~~~~~~~L~i~~v~~~d~-G~~~~Y~C~a~n~~~~~  190 (395)
T 1bih_A          152 DRRITAGPDGNLYFTIVTKEDV-SDIYKYVCTAKNAAVDE  190 (395)
T ss_dssp             CTTEEECTTSCEEEEEECGGGC-CSSEEEEEEEECTTCSS
T ss_pred             cccEEEcCCCcEEEEEEeeccC-CCceEEEEEEEecccce
Confidence            6788999999999999999996 7   9999999987654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=96.45  E-value=0.0013  Score=42.03  Aligned_cols=45  Identities=24%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             eEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         10 KYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        10 ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ++.+...   +.|.|.+|+.+|. |.|+|++.|.....   +. ...|.|.++
T Consensus        41 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~~~~---~~-~~~l~V~~~   88 (292)
T 4dkd_C           41 HWTLYSDGSSSILSTNNATFQNT-GTYRCTEPGDPLGG---SA-AIHLYVKDP   88 (292)
T ss_dssp             SCEECCBTTEEEEEESSCCGGGC-SCEEECCCC----C---CE-EECCEECCS
T ss_pred             ceEEeccCceEEEEEcccccccC-EEEEEEEccCCCCc---ce-EEEEEEcCc
Confidence            4445443   4999999999996 99999999876433   22 446666653

>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*

Probab=96.45  E-value=0.0045  Score=37.37  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+..+     -.|.|.+++.+|. +.|.|++.+.   ....-+ +.+|.|...
T Consensus        67 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~Ca~~~~---~~~fG~-GT~l~~~~~  118 (123)
T 3k1k_C           67 KGRFTISRDDARNTVYLQMNSLKPEDT-AVYYCNVNVG---FEYWGQ-GTQVTVSSH  118 (123)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEESS---SEEECC-CEEEEEC--
T ss_pred             cccEEEEEeCCCCEEEEEECCCChhhC-EEEEEEEecC---cceECC-CEEEEEecc
Confidence            478988532     2499999999996 9999999763   344444 778888753

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=96.44  E-value=0.0017  Score=44.23  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ++++. +.+|.|.|.+|+.+|+ |.|.|.+.|.. |...  + .+.|.|.
T Consensus       339 ~~~~~-~~~~~L~i~~v~~~D~-G~Y~C~A~N~~-G~~~--~-~a~L~V~  382 (384)
T 3kld_A          339 RDRIQ-IEQGTLNITIVNLSDA-GMYQCVAENKH-GVIF--S-SAELSVI  382 (384)
T ss_dssp             BTTEE-EETTEEEESSCCGGGC-EEEEEEEEETT-EEEE--E-EEEEEEC
T ss_pred             CccEE-EeCCEEEEeecChhhC-EEEEEEEEeCC-ceEE--e-ceEEEEe
Confidence            34555 4689999999999996 99999999985 3322  2 3466653

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=96.44  E-value=0.0068  Score=41.09  Aligned_cols=49  Identities=20%  Similarity=0.200  Sum_probs=35.4

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +..|.|.+++.+|. +.|.|++.... ..+..... +.+|.|.+
T Consensus        56 ~~Rfs~~~~~~~~~~sLtI~~lq~~DS-G~Y~Ca~~~~~~~~~~~fG~-GT~L~V~~  110 (229)
T 3mbe_C           56 NGRLKSTFNSKERYSTLHIKDAQLEDS-GTYFCAAEDGGSGNKLIFGT-GTLLSVKP  110 (229)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCSTTC-BEEEEEEECSSSTTCEEECC-CCEEEEEC
T ss_pred             CCCEEEEECCCCCEEEEEEECCcccCC-CCEEEEEEeCCCcccceeCC-CEEEEEec
Confidence            4678775  2   24599999999996 99999998642 23444443 67888875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=96.43  E-value=0.0043  Score=39.56  Aligned_cols=46  Identities=26%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +++|.+..   .+.|.|.+++.+|. |.|+|++.|....   .+. ...|.|.+
T Consensus        49 ~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~n~~g~---~~~-~~~l~V~~   97 (284)
T 2rik_A           49 GGNYKMTLVENTATLTVLKVTKGDA-GQYTCYASNVAGK---DSC-SAQLGVQE   97 (284)
T ss_dssp             SSSEEEEEETTEEEEEESSCCGGGC-EEEEEEEEETTEE---EEE-EEEEEEEC
T ss_pred             CCcEEEEEcCCEEEEEEecCCcccC-EEEEEEEEECCce---EEE-EEEEEccC
Confidence            45665542   57899999999996 9999999987532   222 44666654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=96.43  E-value=0.0039  Score=40.19  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=28.5

Q ss_pred             cCCeEEEeeccc---EEEeecCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.++.+..+|.   |.|.+++.+|. +.|+|++.|...
T Consensus       151 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g  188 (317)
T 2y25_A          151 YSDRVKTGVTGEQIWLQINEPTPNDK-GKYVMELFDGKT  188 (317)
T ss_dssp             CCSSEEEEECSSEEEEEEESCCGGGC-EEEEEEEECSSC
T ss_pred             CCCCeEEeccCCEEEEEECcCCcccC-eeEEEEEEeCCc
Confidence            346777776665   99999999996 999999999653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=96.41  E-value=0.0043  Score=39.96  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             cCCeEEEe---ecccEEEee-cCCCCCCcceeEEeecccc
Q psy10521          7 VGGKYVVL---SSGDLYVFN-ATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         7 ~~~ry~il---psGeL~I~n-v~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+++|.+.   ..+.|.|.+ ++.+|. +.|+|++.|..-
T Consensus       147 ~~~~~~~~~~~~~~~l~i~~~~~~~d~-G~Y~C~a~N~~G  185 (305)
T 2nzi_A          147 NNGHYQVIVTRSFTSLVFPNGVERKDA-GFYVVCAKNRFG  185 (305)
T ss_dssp             SSSSCEEEECSSEEEEEETTCCCSTTC-EEEEEEEEETTE
T ss_pred             CCCcEEEEEcCCceEEEEecCCccCcc-EEEEEEEEeCCC
Confidence            34566665   357899999 999996 999999999864

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=96.41  E-value=0.004  Score=36.16  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..     +-.|.|.||+.+|. +.|.|++...
T Consensus        59 ~~r~~~~~~~~~~~~sL~I~~v~~~Ds-g~Y~C~v~~~   95 (116)
T 3bia_X           59 STKYTLLGKVQFGEVSLTISNTNRGDS-GVYCCRIEVP   95 (116)
T ss_dssp             STTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEECS
T ss_pred             CceEEEeccCCCCEEEEEEccCChhHC-EEEEEEEEcC
Confidence            35666532     23699999999996 9999999854

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=96.41  E-value=0.0022  Score=42.79  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.|+.+ .+|.|.|.+|+.+|. |.|.|.+.|.+-
T Consensus       338 ~~~~~~-~~~~L~i~~v~~~d~-G~Y~C~a~N~~G  370 (382)
T 1cs6_A          338 QNRIEV-SGGELRFSKLVLEDS-GMYQCVAENKHG  370 (382)
T ss_dssp             CSSEEE-ETTEEEESSCCGGGC-EEEEEEEEETTE
T ss_pred             CceEEE-ECCEEEECcCCcccC-EEEEEEEEeCCC
Confidence            345555 578999999999996 999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.39  E-value=0.0011  Score=44.66  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=29.5

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+|.|.|.+|+.+|+ |.|+|++.|.+- ..  +. ...|.|.++
T Consensus       307 ~~~~L~I~~v~~~d~-G~Y~C~a~N~~G-~~--~~-~~~l~V~~~  346 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNN-GNYTLLAANPFG-QA--SA-SIMAAFMDN  346 (347)
T ss_dssp             EEEEEEESSCCGGGC-EEEEEEEEETTE-EE--EE-EEEECSCCC
T ss_pred             cceEEEECCCCcccC-ceEEEEEecCCC-ce--ee-EEEEEecCC
Confidence            367799999999995 999999999864 22  22 346666543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=96.37  E-value=0.0012  Score=40.10  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             CeEEEe----eccc--EEEeecCCCCCCcceeEEeeccc
Q psy10521          9 GKYVVL----SSGD--LYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         9 ~ry~il----psGe--L~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +|+.+.    .+|.  |.|.+|+.+|+ |.|+|++.|..
T Consensus        54 ~r~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~~~~~~   91 (184)
T 2ny1_B           54 DRADSRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQK   91 (184)
T ss_dssp             GGEECCGGGGGGTBCCEEECSCCGGGC-EEEEEEETTEE
T ss_pred             CccccccccccCCeEEEEEecCCHHHC-EEEEEEEEcCC
Confidence            445553    3455  99999999996 99999999873

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.37  E-value=0.0024  Score=39.63  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=27.3

Q ss_pred             CCeEEEe-ecccEEEee-cCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVL-SSGDLYVFN-ATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~il-psGeL~I~n-v~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +|+-+.. .++.|.|.+ ++.+|+ |.|.|++.|....
T Consensus        34 ~g~~l~~~~~~~L~I~~~~~~~D~-G~Y~C~a~n~~g~   70 (186)
T 1jbj_A           34 NGQELPQKHDKHLVLQDFSEVEDS-GYYVCYTPASNKN   70 (186)
T ss_dssp             TTEEECSCCCSEEEEESCCTTTSC-EEEEEECSSCCCC
T ss_pred             CCEECCCCCCCEEEECCCCccccC-EEEEEEEEeCCCc
Confidence            3444333 578899999 999996 9999999998544

>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*

Probab=96.35  E-value=0.0038  Score=39.16  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc------Cc-EEecccceeEEEeccccccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT------GE-SQASVFQTRLSITGFRAVYS   64 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT------ge-~~~S~~~~~l~v~ep~~~~~   64 (66)
                      .+||.+..+     -.|.|.+++.+|. +.|.|++...-.      +. ...-. +.+|.|+......|
T Consensus        67 ~~Rfs~~~~~~~~~~sL~I~~lq~~Ds-g~YyCa~~~~~~~~~~~~~~~~~fG~-GT~L~V~~~~~~~~  133 (146)
T 3qyc_A           67 KGRFTISRDNSKNTVYLQMNSLRAEDT-AVYYCVTLPDLCPGDNCTYPDASWGQ-GTMVTVSSGSEQKL  133 (146)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEECCCCBSSSCCCCCCCCBCC-CEEEEECCC-----
T ss_pred             CCcEEEEecCCCCEEEEEECCCCHHhC-EEEEEEEecCCcccccccccccEECC-CEEEEEECCCCCCc
Confidence            478988632     2499999999996 999999975421      12 23333 77999986554433

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=96.35  E-value=0.0026  Score=40.87  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.|.|.+|+.+|. |.|.|.+.|.+-... .+   +.|.|..
T Consensus       241 ~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~-~~---~~l~v~~  278 (289)
T 3mjg_X          241 RSILHIPSAELEDS-GTYTCNVTESVNDHQ-DE---KAINITV  278 (289)
T ss_dssp             EEEEEESSCCSSCC-EEEEEEEEETTTTEE-EE---EEEEEEE
T ss_pred             EEEEEEcccChhhC-cEEEEEeecCCCCce-eE---EEEEEEE
Confidence            47899999999995 999999999875443 22   3555543

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=96.33  E-value=0.007  Score=35.62  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             CCeEEEe--ecc--cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVL--SSG--DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~il--psG--eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+||.+.  ++|  .|.|.|++.||. +.|.|++....
T Consensus        55 ~~R~s~~~~~~~~~~L~I~~l~~~Ds-g~Y~C~~~~~~   91 (106)
T 2frg_P           55 GRRTFLTDLGGGLLQVEMVTLQEEDA-GEYGCMVDGAR   91 (106)
T ss_dssp             TTTEEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CCCEEEEcCCCCEEEEEEccCCHHHC-EEEEEEeecCC
Confidence            5788873  333  599999999996 99999998654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=96.33  E-value=0.0039  Score=41.49  Aligned_cols=44  Identities=34%  Similarity=0.497  Sum_probs=32.0

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +++. ..++.|.|.+++.+|. |.|+|++.|..-..   +. ...|.|.+
T Consensus       263 ~~~~-~~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~---~~-~~~l~V~~  306 (388)
T 2v5m_A          263 DRVK-QVSGTLIIKDAVVEDS-GKYLCVVNNSVGGE---SV-ETVLTVTA  306 (388)
T ss_dssp             SSEE-EETTEEEESSCCGGGC-EEEEEEEECSSCEE---EE-EEEEEEEE
T ss_pred             Ccee-cccCEEEECcCCHHHC-eEEEEEEecCCCce---eE-EEEEEEeC
Confidence            3443 3588999999999996 99999999987432   22 34566654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=96.33  E-value=0.004  Score=41.47  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=26.3

Q ss_pred             eEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.....++.|.|.+++.+|. +.|+|++.|...
T Consensus       268 ~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g  299 (404)
T 3p3y_A          268 AKFENFNKALRITNVSEEDS-GEYFCLASNKMG  299 (404)
T ss_dssp             EEEEGGGTEEEESSCCGGGC-EEEEEEEECSSC
T ss_pred             ccccccCceEEEccCCHhHC-EEEEEEEEeCCC
Confidence            33344578999999999996 999999999864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=96.32  E-value=0.0025  Score=39.95  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+++.+|+ |.|+|++.|.....  .+. ...|.|.+
T Consensus        64 ~~~L~i~~v~~~d~-G~Y~C~~~n~~~~~--~s~-~~~l~V~~  102 (218)
T 3k0w_A           64 TSELIFNAVHVKDA-GFYVCRVNNNFTFE--FSQ-WSQLDVCD  102 (218)
T ss_dssp             SSEEEETTCCGGGC-EEEEEEEECTTCCE--ECC-CEEEEEEC
T ss_pred             CCEEEEccCChhhC-eEeEEEEEcCCCCc--eee-EEEEEEEc
Confidence            57899999999996 99999999986533  222 45666654

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=96.32  E-value=0.0039  Score=37.43  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             CCeEEEeec---c--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS---G--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps---G--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-+   +  -|.|.+++.||. +.|.|...+.-.+...... .-+|.|.+
T Consensus        62 ~~Rfs~~~~~~~~~~~LtI~~l~~~Ds-g~Y~C~~~~~~~~~~~~~~-~v~L~V~~  115 (119)
T 1smo_A           62 VGRIILEDYHDHGLLRVRMVNLQVEDS-GLYQCVIYQPPKEPHMLFD-RIRLVVTK  115 (119)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCTTSCCEECSC-EEEEEC--
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEcCCCCcceEEE-EEEEEEEC
Confidence            378988532   2  599999999996 9999999865422222222 44666654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=96.32  E-value=0.0034  Score=40.25  Aligned_cols=41  Identities=20%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             EEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        12 ~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++++|.|.+  |+.+|. |.|+|.+.|.. |+.  +. ...|.|..|
T Consensus       225 ~~~~~g~~~~--v~~~d~-G~Y~C~a~N~~-G~~--~~-~~~l~V~~p  265 (265)
T 2oz4_A          225 FPLPIGESVT--VTRDLE-GTYLCRARSTQ-GEV--TR-EVTVNVLSP  265 (265)
T ss_dssp             EECCTTSCEE--CCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEECC
T ss_pred             ccCCCCcEEE--eehhhC-eEEEEEEECCC-CcE--EE-EEEEEEecC
Confidence            4678888864  888995 99999999976 543  22 457777654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=96.32  E-value=0.0042  Score=38.90  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=30.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .+.|.|.+++.+|. |.|.|.+.|.. |.. .|. ...|.|.+.
T Consensus       164 ~~~L~i~~v~~~d~-G~Y~C~a~n~~-g~~-~s~-~~~l~V~~~  203 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQ-GTYWCHVYNDR-DSQ-DSK-KVEIIIDEL  203 (218)
T ss_dssp             SSEEEESSCCGGGC-EEEEEEEECSS-CEE-ECC-CEEEEECC-
T ss_pred             CCEEEEeecChhcC-EEEEEEEEcCC-CCc-eee-eEEEEEeCC
Confidence            56799999999995 99999999964 322 343 668888764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=96.29  E-value=0.0027  Score=41.57  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ++.|.|.||+.+|+ |.|+|++.+.-.|.
T Consensus        78 ~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~  105 (313)
T 4fqp_A           78 NASLRMFGLRVEDE-GNYTCLFVTFPQGS  105 (313)
T ss_dssp             BCCEEECSCCGGGC-EEEEEEEECSSSCE
T ss_pred             ceEEEECcCChhhC-EEEEEEEeeccCcc
Confidence            46799999999996 99999986544443

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=96.28  E-value=0.0017  Score=39.23  Aligned_cols=50  Identities=26%  Similarity=0.395  Sum_probs=34.4

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccc--------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKI--------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~l--------Tge~~~S~~~~~l~v~ep   59 (66)
                      ++||.+.  +   +..|.|.||+.+|. +.|.|++....        +.+...-. +.+|.|.+.
T Consensus        52 ~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~~fG~-GT~l~v~~~  114 (121)
T 2i24_N           52 GGRYVETVNRGSKSFSLRINDLTVKDS-GTYRCKPESRYGSYDAVCAALNDQYGG-GTVVTVNAA  114 (121)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEESSGGGCHHHHHHTTCCCC-CEEEEEECC
T ss_pred             CCCeEEEecCCCCEEEEEECCCChhhC-EEEEEEEecCCccccccccceeeEECC-CeEEEEccc
Confidence            4677653  1   45699999999996 99999997521        11233333 778888764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=96.28  E-value=0.0026  Score=40.29  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +|+-+-...+.|.|.+|+.+|+ |.|+|++.|.
T Consensus        45 ~g~~l~~~~~~L~i~~v~~~D~-G~Y~C~a~n~   76 (204)
T 3sgj_C           45 NESLISSQASSYFIDAATVDDS-GEYRCQTQLS   76 (204)
T ss_dssp             TTEEESCCSSEEEESSCCGGGC-EEEEEEETTS
T ss_pred             CCEEcccCccEEEEecccccCC-EEEEEEeCCC
Confidence            3443333458999999999996 9999999873

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=96.27  E-value=0.0056  Score=40.62  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +..|.|.|++.+|. +.|.|++.+..  ...... +.+|.|..
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~--~~~~g~-gt~L~V~~  110 (229)
T 2q86_A           59 NGRYSATLDKDAKHSTLHITATLLDDT-ATYFCVVGDRG--SALFGS-GTQLIVIP  110 (229)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEESCGG--GCEECC-CEEEEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEEcccCcccC-ccEEEEEEecC--cccccC-CEEEEEEC
Confidence            46887752     23799999999997 99999998632  122222 55777764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=96.27  E-value=0.0051  Score=38.54  Aligned_cols=38  Identities=13%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+++.+|. +.|.|.+.|.. +  ..+. ...|.|.+
T Consensus       130 ~~~l~i~~~~~~d~-G~Y~C~~~n~~-~--~~~~-~~~l~V~~  167 (262)
T 3rjd_A          130 NSNLTILKTNISHN-GTYHCSGMGKH-R--YTSA-GISVTVKE  167 (262)
T ss_dssp             CCCEEESSCCGGGC-EEEEEEEESSS-E--EEEE-CEEEEEEC
T ss_pred             CCeEEEEECChhhC-EEEEEEEeCCC-C--cccc-ceEEEecc
Confidence            78999999999996 99999999987 2  2232 45676665

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=96.26  E-value=0.0022  Score=38.60  Aligned_cols=28  Identities=7%  Similarity=0.188  Sum_probs=23.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+.|.|.+++.+|+ +.|+|++.|+.-.+
T Consensus       174 ~s~L~i~~~~~~d~-g~YtC~a~N~~g~~  201 (218)
T 4frw_A          174 TSEFHLVPSRSMNG-QPLTCVVSHPGLLQ  201 (218)
T ss_dssp             EEEEEECCCGGGTT-CEEEEEEECTTCSS
T ss_pred             EEEEEEeeCCHHhC-eEEEEEEEeCCCCe
Confidence            45799999999995 99999999985433

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=96.26  E-value=0.0045  Score=40.03  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=26.2

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+.-     +..|.|+|++.+|. +.|.|++.+.
T Consensus        56 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~   92 (206)
T 1kgc_D           56 NRMASLAIAEDRKSSTLILHRATLRDA-AVYYCILPLA   92 (206)
T ss_dssp             CSSEEEEECTTSSEEEEEESSCCGGGC-EEEEEECCCC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcccC-ccEEEEEecc
Confidence            57888752     23799999999997 9999999874

>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0

Probab=96.24  E-value=0.0085  Score=37.84  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc--------cCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI--------TGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l--------Tge~~~S~~~~~l~v~ep   59 (66)
                      .+||.+.-+     -.|.|.+++.+|. +.|.|+....-        .++...-. +.+|.|.+.
T Consensus        79 ~~Rfs~s~~~s~~~~sL~I~~lq~~Ds-g~YyCa~~~~~~~~~~~~~~~~~~fG~-GT~LtV~~~  141 (151)
T 3k3q_A           79 EGRFSVSRDAAATMVFLQADNVRLDDT-ASYYCAADEDVTPRVMGVIPHADHWGQ-GTLVTVSSA  141 (151)
T ss_dssp             TTTCEEEECTTSSEEEEEESSCCSTTC-EEEEEEEETTSCHHHHHHTTCCSEECC-CEEEEEEC-
T ss_pred             CCCEEEEecCCCCEEEEEECCCccccC-EEEEEEEecCCcccccccccccccCCc-CEEEEEecc
Confidence            478887532     2499999999996 99999997642        23444454 789998864

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=96.23  E-value=0.0013  Score=42.09  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=21.7

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.|.|.+|+.+|. |.|+|.+.|..
T Consensus       171 ~~L~I~~v~~~D~-G~Y~C~a~N~~  194 (207)
T 3rbs_A          171 CTLLITEFSKKDA-GIYEVILKDDR  194 (207)
T ss_dssp             EEEEETTCCGGGC-EEEEEEEEETT
T ss_pred             EEEEECCCCcccC-EEEEEEEEcCC
Confidence            3599999999996 99999999985

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=96.23  E-value=0.0078  Score=37.11  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      |.|.+|+.+|. +.|.|++.|..-....    ...|.|.+
T Consensus       172 l~i~~v~~~d~-G~Y~C~a~n~~g~~~~----~~~l~V~~  206 (222)
T 4i0k_A          172 HSVLRVVLGAN-GTYSCLVRNPVLQQDA----HGSVTITG  206 (222)
T ss_dssp             EEEEEEECCTT-CEEEEEEEETTTTEEE----EEEEECCC
T ss_pred             EEEEEEEeCCC-CEEEEEEECCCCCCce----EEEEEEeC
Confidence            78999999995 8999999999865432    34666665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.23  E-value=0.0052  Score=40.20  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=28.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|.+++.+|. +.|+|++.|.. |..  +. ...|.|.+
T Consensus       179 ~~~L~i~~v~~~d~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~  216 (334)
T 1ry7_B          179 QWSLVMESVVPSDR-GNYTCVVENKF-GSI--RQ-TYTLDVLE  216 (334)
T ss_dssp             TTEEEECSCCGGGC-CCEEEEEEETT-EEE--EE-EEEEEEEC
T ss_pred             eEEEEECCCCcccC-EEEEEEEEeCC-CCE--EE-EEEEEEec
Confidence            56899999999996 89999999986 332  22 34666654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=96.23  E-value=0.0096  Score=38.63  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             CeEEEe--ecc---cEEEeecCC-CCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVL--SSG---DLYVFNATP-NDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~il--psG---eL~I~nv~~-~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +++.+.  ++|   .|.|.+++. +|. |.|+|++.|... .  .+. ...|.|.+
T Consensus        50 ~~~~~~~~~~~~~~~L~i~~~~~~~D~-G~Y~C~a~n~~g-~--~~~-~~~l~V~~  100 (304)
T 2yd9_A           50 QRFETIEFDESAGAVLRIQPLRTPRDE-NVYECVAQNSVG-E--ITV-HAKLTVLR  100 (304)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCTTTTC-SEEEEEEECSSC-E--ECC-EEEEEEEC
T ss_pred             CceEEEEecCCCceEEEEecccccCCC-eEEEEEEECCCC-e--EEE-EEEEEEec
Confidence            455554  444   599999998 886 999999998763 3  232 55677664

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=96.21  E-value=0.0063  Score=39.36  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  ++   ..|.|.|++.+|. +.|.|++.+.- .+...... +.+|.|..
T Consensus        56 ~~Rf~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~fg~-gt~L~V~~  110 (200)
T 2nw2_A           56 KGRFSSFLSRSKGYSYLLLKELQMKDS-ASYLCAVQASGGSYIPTFGR-GTSLIVHP  110 (200)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEC---CCCCCEECC-CEEEEEEC
T ss_pred             CCceEEEecCCCCEEEEEECccCcccC-CcEEEEEEcCCcceeeeeCC-CEEEEEec
Confidence            5788875  22   3699999999996 99999998631 12222223 56777765

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=96.21  E-value=0.012  Score=35.70  Aligned_cols=43  Identities=9%  Similarity=0.078  Sum_probs=30.9

Q ss_pred             CeEEE-eecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEE
Q psy10521          9 GKYVV-LSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLS   55 (66)
Q Consensus         9 ~ry~i-lpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~   55 (66)
                      +||.+ ..++   .|.|.+++.||. +.|.|++.+  .++..... +.+|.
T Consensus        73 ~rfs~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~--~~~~~fg~-Gt~v~  119 (128)
T 1nez_G           73 KLFSAMRDTNNKYVLTLNKFSKENE-GYYFCSVIS--NSVMYFSS-VVPVL  119 (128)
T ss_dssp             GTEEEEEETTTEEEEEESSCCGGGC-EEEEEEEEE--TTEEEECC-CEEEE
T ss_pred             CcEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEcC--CCCeEEcC-CeEEe
Confidence            68887 5444   599999999996 999999974  23444443 55555

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=96.20  E-value=0.0087  Score=39.60  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +..|.|.+++.+|. +.|.|++..  .++..... +.+|.|..
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~l~~~Ds-G~Y~Ca~~~--~~~~~fG~-GT~L~V~~  109 (200)
T 3rgv_A           58 SRGFEATYDKGTTSFHLQKTSVQEIDS-AVYYCAANS--GTYQRFGT-GTKLQVVP  109 (200)
T ss_dssp             ETTEEEECBTTTTBCCEEESSCCSTTC-EEEEEEEES--SSCCCCCC-CEEEEEEC
T ss_pred             CCceEEEECCCCCEEEEEEcCCcCccC-CCEEEEecc--CcccccCc-CEEEEEeC
Confidence            4788875  2   35699999999996 999999964  23333332 56888875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=96.19  E-value=0.008  Score=40.20  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=27.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~   57 (66)
                      .+.|.|.+|+.+|+ |.|.|++.|... |+.  +. ...|.|.
T Consensus       254 ~~~L~i~~v~~~d~-G~Y~C~a~n~~~~g~~--~~-~~~l~V~  292 (363)
T 1wio_A          254 PLHLTLPQALPQYA-GSGNLTLALEAKTGKL--HQ-EVNLVVM  292 (363)
T ss_dssp             SCEEEESSBCGGGC-EEEEEEECBTTTTCCE--EE-EEEEEEE
T ss_pred             ceEEEEccCCcCcC-cEEEEEEEEhhhcCeE--EE-EEeEEEE
Confidence            44899999999996 999999999833 432  22 3455554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=96.19  E-value=0.0039  Score=38.73  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++.|.|.+|+  |+ |.|.|.+.+..
T Consensus       162 ~~~L~i~~v~--d~-G~Y~C~a~~~~  184 (201)
T 1nkr_A          162 QADFPLGPAT--HG-GTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEEEECC--SC-EEEEEEEEETT
T ss_pred             EEEEEeCCcC--CC-eeEEEEEEcCC
Confidence            6789999999  75 99999998653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=96.19  E-value=0.0045  Score=38.66  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=25.5

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      |.|.+  ++.|.|.+++++|  +.|.|++.|....+
T Consensus       182 ~~~~~--~s~L~i~~~~~~d--g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          182 DLYTL--SSSVTVPSSTWPS--ETVTCNVAHPASST  213 (222)
T ss_dssp             TEEEE--EEEEEEETTTTTT--SCCEEEEEEGGGTE
T ss_pred             CcEEE--EEEEEECchhcCC--CeEEEEEEccCCCC
Confidence            34444  4579999999999  89999999987654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.18  E-value=0.001  Score=41.10  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +++|.+  .+.|.|.+++.+|. +.|.|++.|+-..
T Consensus       170 ~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          170 DSTYSM--SSTLTLTKDEYERH-NSYTCEATHKTST  202 (213)
T ss_dssp             TCCEEE--EEEEEEEHHHHHHC-CEEEEEEECTTCS
T ss_pred             CCCEEE--EEEEEEeccccCCC-CEEEEEEEEccCC
Confidence            345543  45899999999996 9999999998544

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=96.18  E-value=0.0035  Score=43.99  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..++.|.|.+++.+|+ |.|+|++.|   |+   +. ...|.|.+|
T Consensus        77 ~~~~~L~I~~~~~~D~-G~Y~C~a~n---g~---~~-~~~l~V~~p  114 (524)
T 2ec8_A           77 NKQNEWITEKAEATNT-GKYTCTNKH---GL---SN-SIYVFVRDP  114 (524)
T ss_dssp             ECSSEEEESSCCSTTC-EEEEEEETT---SC---EE-EEEEECCCS
T ss_pred             CccceEEEcccchhhC-EEEEEeecC---Cc---ce-EEEEEECCC
Confidence            3578899999999996 999999999   53   33 557777754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=96.18  E-value=0.00081  Score=48.80  Aligned_cols=46  Identities=17%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             eEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         10 KYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        10 ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      ++.+.. ++.|.|.+|+.+|+ |.|.|++.|.+- +.  +. .+.|.|.++.
T Consensus       712 ~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G-~~--~~-~~~l~V~~~p  758 (772)
T 3v2a_R          712 GIVLKDGNRNLTIRRVRKEDE-GLYTCQACSVLG-CA--KV-EAFFIIEGAQ  758 (772)
T ss_dssp             ----------------------------------------------------
T ss_pred             CeEEcCCCcEEEECcCCHHHC-EEEEEEEEeCCc-ce--eE-EEEEEEECCC
Confidence            455543 78999999999996 999999999863 32  22 4578887643

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=96.18  E-value=0.001  Score=41.86  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +++|..  ++.|.|.+++++|+ +.|.|++.|....
T Consensus        61 ~~~~~~--~~~L~I~~~~~~D~-G~Y~C~a~~~~~~   93 (207)
T 2vol_A           61 NSTFRS--VSELPIMHQDWLNG-KEFKCRVNSAAFP   93 (207)
T ss_dssp             TTEEEE--EEEEECCHHHHHTT-CCEEEEEECTTCS
T ss_pred             CCcEEE--EEEEEEehhHcCCC-CEEEEEEEccCCC
Confidence            355543  56899999999996 9999999987653

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.17  E-value=0.0042  Score=42.52  Aligned_cols=42  Identities=14%  Similarity=0.309  Sum_probs=32.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+.|.|.+++.+|+ +.|.|++.|...|+....+....|.|..
T Consensus       326 ~~~L~i~~~~~~d~-G~Y~C~a~n~~~g~~~~~~~~~~l~V~~  367 (450)
T 1z7z_I          326 RAQLLLKATPEDNG-RSFSCSATLEVAGQLIHKNQTRELRVLY  367 (450)
T ss_dssp             CCCEEEECCGGGTT-CEEEEEEEEEETTEEEEEEEEEECEEEE
T ss_pred             eEEEEEecCcccCC-ceEEEEEEcCCCCcccccceeEEEEEec
Confidence            45799999999996 9999999999888765333345666653

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=96.14  E-value=0.011  Score=40.04  Aligned_cols=49  Identities=14%  Similarity=0.106  Sum_probs=35.6

Q ss_pred             CeEEEe--e---cccEEEeecCCCCCCcceeEEeecc-ccCcEEecccceeEEEecc
Q psy10521          9 GKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNK-ITGESQASVFQTRLSITGF   59 (66)
Q Consensus         9 ~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~-lTge~~~S~~~~~l~v~ep   59 (66)
                      +||.+.  +   +-.|.|.+++.+|. +.|.|++... ..++...-. +.+|.|.+.
T Consensus        69 ~Rfs~s~~~~~~~~sLtI~~lq~~DS-G~YyCa~~~~~~~~~~~fG~-GT~LtV~~~  123 (226)
T 3tjh_C           69 NGFEAEFSKSDSSFHLRKASVHWSDS-AVYFCAVSAKGTGSKLSFGK-GAKLTVSPN  123 (226)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGC-EEEEEEEEESSCSSSEEECC-CEEEEEECC
T ss_pred             CcEEEEEcCCCCEEEEEEecCCcccC-CCEEEEEEecCCccccccCC-CeEEEEeCC
Confidence            788875  2   23499999999996 9999999854 234444444 678888763

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=96.12  E-value=0.0028  Score=41.17  Aligned_cols=49  Identities=27%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +..|.|.|++++|. +.|.|++.+.. .+...... +.+|.|..
T Consensus        58 ~~Rf~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~g~-gt~L~V~~  112 (207)
T 1ymm_D           58 SGRLRVTLDTSKKSSSLLITASRAADT-ASYFCATDTTSGTYKYIFGT-GTRLKVLA  112 (207)
T ss_dssp             SSSCCBCCBGGGTBCCBCCSSCCSTTC-SCCEEEEEETTSCSCEEECC---------
T ss_pred             CCCEEEEEcCCCCEEEEEECcCCcccC-ceEEEEEEcCCCcceeeECC-CEEEEEEC
Confidence            46777742     35799999999996 99999998742 22222222 45666653

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=96.11  E-value=0.0079  Score=40.15  Aligned_cols=39  Identities=15%  Similarity=0.036  Sum_probs=28.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+.|.|.||+.+|+ +.|.|.+.|...   +.+. .++|.|..
T Consensus        57 ~~~~L~I~~v~~~d~-G~Y~C~a~n~~~---~~~~-~~~ltV~~   95 (210)
T 1gsm_A           57 GRSVLTVRNASLSAA-GTRVCVGSCGGR---TFQH-TVQLLVYA   95 (210)
T ss_dssp             SEEEEEECSCCGGGC-EEEEEEEEETTE---EEEE-EEEEEEEB
T ss_pred             CccEEEECccCcccC-ceEEEEEEeCCC---ceEE-EEEEEEEe
Confidence            456799999999996 999999998642   2232 45666654

>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}

Probab=96.11  E-value=0.0023  Score=40.02  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecccc---CcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lT---ge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +-.|.|.|++.+|. +.|.|++.+...   .+.... .+.+|.|++
T Consensus        73 ~~Rfs~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~fG-~GT~L~V~~  129 (152)
T 3v0a_C           73 KGRFTTSRDDAKNTLYLQMSNLQPEDT-GVYYCATGYRTDTRIPGGSWG-QGTQVTVSS  129 (152)
T ss_dssp             TTTCEEEEETTTTEEEEEEESCCGGGC-EEEEEESSSSCCSCCTTCCBC-CCCEEBC--
T ss_pred             cCcEEEEecCCCCEEEEEECCCCcccC-EEEEEEEccCCCccccccEEC-CCEEEEEeC
Confidence            47888753     13499999999996 999999876421   222333 366777764

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=96.07  E-value=0.0066  Score=43.20  Aligned_cols=40  Identities=13%  Similarity=0.176  Sum_probs=29.0

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      -.|.|.+|+++|..+.|+|++.|++.+.....+.+-++.|
T Consensus       540 s~L~i~~~~~~d~~~~y~C~~~n~~~~~~~~~~~~i~~~v  579 (581)
T 3o3u_N          540 SELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRV  579 (581)
T ss_dssp             EEEEECCCTTSCSCCCEEEEEECSSCSSCCEECCCBCCEE
T ss_pred             EEEEEEeccccCCCceEEEEEeccCCCCCccccCCCCCcc
Confidence            3599999998887799999999998655333322445544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=96.05  E-value=0.0043  Score=37.56  Aligned_cols=25  Identities=24%  Similarity=0.500  Sum_probs=22.5

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .++.|.|.+++.+|+ |.|+|++.|.
T Consensus        49 ~~~~L~i~~v~~~d~-G~Y~C~~~~~   73 (176)
T 1f2q_A           49 TNSSLNIVNAKFEDS-GEYKCQHQQV   73 (176)
T ss_dssp             CSSEEEECSCCGGGC-EEEEEECTTS
T ss_pred             CceEEEEeccceecC-EEEEEEcCCc
Confidence            478999999999996 9999999874

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=96.04  E-value=0.0046  Score=36.08  Aligned_cols=41  Identities=10%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..++.|..|..+|+ |.|+|...++.  .+-..+.+-.|.|++.
T Consensus        64 ~~~f~i~~vt~~~a-G~Y~C~~~~~~--~~S~~Sdpl~L~Vtg~  104 (106)
T 3kgr_A           64 EARFRIDSVSEGNA-GPYRCIYYKPP--KWSEQSDYLELLVKEA  104 (106)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEEETT--EECCCCCCEEEEEECC
T ss_pred             ceEEEecCCCcCCC-ceEEEEeeCCC--cccCCCCCEEEEEeCC
Confidence            35789999999997 99999988742  1222234788988864

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=96.04  E-value=0.01  Score=42.67  Aligned_cols=47  Identities=30%  Similarity=0.461  Sum_probs=34.4

Q ss_pred             cCCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++|+.+.. .+.|.|.+++.+|. +.|+|++.|.....  .|. ...|.|.
T Consensus       153 ~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~~~~--~s~-~~~l~V~  200 (642)
T 1e07_A          153 VSPRLQLSNGNRTLTLFNVTRNDT-ASYKCETQNPVSAR--RSD-SVILNVL  200 (642)
T ss_pred             CCCceEEcCCCCEEEEeCCCcccC-eeEEEEEecCCCCc--ccc-eEEEEEE
Confidence            345777654 77999999999997 99999999986542  232 4456665

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=95.95  E-value=0.0014  Score=41.59  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=25.7

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +++|..  ++.|.|.+++++|+ +.|.|++.|...
T Consensus        69 ~~~~~~--~~~L~I~~~~~~D~-g~Y~C~~~~~~~  100 (218)
T 2rgs_A           69 NSTIRV--VSTLPIQHQDWMSG-KEFKCKVNNKDL  100 (218)
T ss_dssp             TTEEEE--EEEEECCHHHHHTT-CCEEEEEEETTC
T ss_pred             CCeEEE--EEEEEEcHHHcCCC-CeEEEEEECCcC
Confidence            345544  46899999999996 999999999743

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=95.94  E-value=0.011  Score=41.46  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|+.+..+     ..|.|+||+.+|. +.|.|++.+.
T Consensus       453 ~~R~~~~~~~~~~~~sL~I~~v~~~D~-g~Y~C~v~~~  489 (507)
T 3oai_A          453 KERIQWVGDPRWKDGSIVIHNLDYSDN-GTFTCDVKNP  489 (507)
T ss_dssp             TTTEEECCBGGGTBCCEEECSCCGGGC-EEEEEEEEET
T ss_pred             cceEEEecCCCCCceeEEECCCCcccC-eEEEEEEEcC
Confidence            467777643     4799999999996 9999999765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=95.93  E-value=0.0045  Score=38.48  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      .++.+..   .+.|.|.+++.+|. +.|.|.+.|..-.
T Consensus        65 ~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~  101 (215)
T 3mtr_A           65 SNIKIYNTPSASYLEVTPDSENDF-GNYNCTAVNRIGQ  101 (215)
T ss_dssp             CSEEEEEETTEEEEEECCCSGGGC-EEEEEEEECSSCE
T ss_pred             ccEEEecCCCeeEEEEecCChhhC-eEEEEEEEECCCc
Confidence            4566653   57899999999995 9999999998653

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=95.90  E-value=0.0051  Score=39.93  Aligned_cols=25  Identities=12%  Similarity=0.105  Sum_probs=22.6

Q ss_pred             ccEEEeecCCCC-CCcceeEEeecccc
Q psy10521         17 GDLYVFNATPND-GYKSYRCRTVNKIT   42 (66)
Q Consensus        17 GeL~I~nv~~~D-~~~~Y~C~~~~~lT   42 (66)
                      +.|.|.+|+.+| . |.|.|.+.|.+-
T Consensus       277 ~~L~i~~v~~~d~~-G~Y~C~a~N~~G  302 (315)
T 1itb_B          277 TVLNISEIESRFYK-HPFTCFAKNTHG  302 (315)
T ss_dssp             EEEEESSCCGGGGT-SCEEEEEECTTC
T ss_pred             EEEEEeecCHHHcC-CceEEEEecCCC
Confidence            489999999999 6 999999999964

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=95.89  E-value=0.012  Score=35.27  Aligned_cols=46  Identities=11%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             CCeEEEee---cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+..   .|  .|.|.|++.+|. +.|.|++.+....   ... ...|.|..
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~~~~---~~~-~v~L~V~~  111 (124)
T 2nms_A           61 RDRVSIKDNQKNRTFTVTMEDLMKTDA-DTYWCGIEKTGND---LGV-TVQVTIDP  111 (124)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEETTEE---EEE-EEEEEEEC
T ss_pred             CCCEEEEEcCcCCEEEEEEeCCCHHHC-EEEEEEEEcCCCC---ccE-EEEEEEeC
Confidence            46887753   22  599999999996 9999999865432   222 34666664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=95.87  E-value=0.0018  Score=39.97  Aligned_cols=27  Identities=11%  Similarity=0.062  Sum_probs=23.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      ++.|.|.+++++|+ +.|.|++.|....
T Consensus       175 ~s~L~i~~~~~~d~-G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          175 SSYLSLTADQWKSH-NRVSCQVTHEGET  201 (212)
T ss_dssp             EEBCCEEHHHHHTC-SCEEEEEECTTTT
T ss_pred             EEEEEEchhhcCCC-CeEEEEEEeCCce
Confidence            36799999999995 9999999998543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=95.87  E-value=0.0036  Score=38.44  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=22.3

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ...+.|.|.++..+|+ +.|.|++.|..
T Consensus       174 ~~~~~L~i~~~~~~~~-g~Y~C~a~n~~  200 (214)
T 2zg1_A          174 TRSSELTLTPRPEDHG-TNLTCQMKRQG  200 (214)
T ss_dssp             CCSSEEEECCCTTCCS-CEEEEEEECC-
T ss_pred             eeEEEEEEecccHHcC-cEEEEEEEeCC
Confidence            4578899999977774 89999999975

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=95.86  E-value=0.0024  Score=40.57  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +|.|.+  .+.|.|.+++++|+ +.|.|++.|+-..
T Consensus       212 ~g~~~~--~~~L~i~~~~~~d~-G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          212 DSTYSM--SSTLTLTKDEYERH-NSYTCEATHKTST  244 (254)
T ss_dssp             TCCEEE--EEEEEEEHHHHHTC-CEEEEEEECTTCS
T ss_pred             CCcEEE--EEEEEeccccccCC-CeEEEEEEcCCCC
Confidence            345543  45799999999996 9999999998554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=95.85  E-value=0.0092  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      .+|.|.+  +..|.|.+++++|  +.|.|++.|.-.++
T Consensus       182 ~~g~~~~--~s~L~i~~~~~~~--g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          182 SSGLYSL--SSVVTVPSSSLGT--QTYICNVNHKPSNT  215 (225)
T ss_dssp             TTSCEEE--EEEEEEEGGGTTC--CCCCEEEEEGGGTE
T ss_pred             CCCCEEE--EEEEEEechhcCC--CcEEEEEEcCCCCc
Confidence            4566655  4579999999887  89999999976554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=95.84  E-value=0.0067  Score=38.86  Aligned_cols=42  Identities=14%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.|..+..+|+ +.|+|++.|...|+....+....|.|..
T Consensus       141 ~~~l~i~~~~~~~~-g~Y~C~a~n~~~g~~~~~s~~~~l~V~~  182 (265)
T 2oz4_A          141 RAQLLLKATPEDNG-RSFSCSATLEVAGQLIHKNQTRELRVLY  182 (265)
T ss_dssp             EECCEEECCGGGTT-EEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             cEEEEEccccccCC-ceEEEEEEcCCCCCcccccccEEEEEEe
Confidence            46788888888774 7899999998888765443345666653

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=95.84  E-value=0.0093  Score=39.37  Aligned_cols=47  Identities=19%  Similarity=0.336  Sum_probs=34.2

Q ss_pred             CCeEEEe--e---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.  +   +-.|.|.+++.+|. +.|.|++..  .++..... +.+|.|..
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~l~~~Ds-G~Y~Ca~~~--~~~~~fG~-GT~L~V~~  109 (199)
T 3gsn_A           58 KGRISATLNTKEGYSYLYIKGSQPEDS-ATYLCARNT--GNQFYFGT-GTSLTVIP  109 (199)
T ss_dssp             ETTEECCCBTTTTEEEEEBSSCCGGGC-EEEEEEEES--SSCEEECS-CEEEEEEC
T ss_pred             cCceEEEECCCCCEEEEEEccCcccCC-ccEEEEEcc--cccccCCC-CEEEEEec
Confidence            4677775  2   24599999999996 999999954  24444444 67888876

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1

Probab=95.83  E-value=0.015  Score=36.01  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             CCeEEEeecc-----cEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .|||.+.-+.     -|.|.+++.||. +.|.|+..+.-
T Consensus        67 ~gRfsis~~~s~~~~~LtIs~lq~eDs-a~Y~Ca~~~~~  104 (127)
T 1q8m_A           67 VGRIILEDYHDHGLLRVRMVNLQVEDS-GLYQCVIYQPP  104 (127)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCCT
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEECCC
Confidence            3799886322     599999999996 99999997654

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=95.79  E-value=0.017  Score=36.01  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      +.+|+|.+.  ..|.|.+++++|. +.|.|.+.|+-
T Consensus       178 ~~~~~~~~~--s~L~i~~~~~~d~-g~ytC~v~~~~  210 (221)
T 3m8o_H          178 ASGDLYTTS--SQLTLPATQCLAG-KSVTCHVKHYT  210 (221)
T ss_dssp             SSSSCEEEE--EEEEEEGGGSCTT-CEEEEEEEETT
T ss_pred             CCCCcEEEE--EEEEECHHHcCCC-CeEEEEEEECC
Confidence            456788774  3699999999995 99999999985

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=95.76  E-value=0.024  Score=36.63  Aligned_cols=43  Identities=9%  Similarity=0.114  Sum_probs=30.5

Q ss_pred             CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCcEEecccceeE
Q psy10521          8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL   54 (66)
Q Consensus         8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l   54 (66)
                      .+||.+.-++    .|.|.+++.+|. +.|.|++...  .+....+ +.+|
T Consensus        77 ~~Rfs~s~~~~~~~sL~I~~vq~eDs-G~YyCa~~~~--~~l~FG~-GT~v  123 (166)
T 3dmm_C           77 SKLFSAMRDTNNKYVLTLNKFSKENE-GYYFCSVISN--SVMYFSS-VVPV  123 (166)
T ss_dssp             CCSEEEECSTTTEEEEEESSCCTTTC-EEEEEEEESS--SCEEECB-CEEE
T ss_pred             ccceEEEcCCCCEEEEEECCCChhhC-EEEEEEECCC--CCeEECC-CEEe
Confidence            6788886433    399999999996 9999999742  3444443 4444

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=95.76  E-value=0.0033  Score=42.10  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=26.6

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+|+.+..      .+.|.|.+|+.+|+ |.|+|++.|..
T Consensus        52 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~~   90 (363)
T 1wio_A           52 NDRADSRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQK   90 (363)
T ss_dssp             GGGEECCHHHHHTTCCCEEECSCCGGGC-EEEEEEETTEE
T ss_pred             ccceeeeeccccCCeEEEEECCCCHHHC-EEEEEEEEECC
Confidence            35666543      56799999999996 99999999873

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=95.75  E-value=0.014  Score=38.86  Aligned_cols=49  Identities=18%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc--ccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK--ITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~--lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +-.|.|.+++.+|. +.|.|++...  ..++..... +.+|.|.+
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~lq~~Ds-G~Y~Ca~~~~~~~~~~~~fG~-GT~L~V~~  114 (208)
T 4ei6_A           59 EGRFTAHLNKASLHVSLHIRDSQPSDS-ALYFCAASEQNNYAQGLTFGL-GTRVSVFP  114 (208)
T ss_dssp             ETTEEEEEBTTTTBC-CEECSCCGGGC-EEEEEEEEECCSSCCCCEECC-CEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEEEeCcccCC-CcEEEEEecCCCccccccCCC-CEEEEEeC
Confidence            47887752     34699999999996 9999998642  122344444 66888875

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.73  E-value=0.0066  Score=40.48  Aligned_cols=41  Identities=29%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccC-cEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg-e~~~S~~~~~l~v~ep   59 (66)
                      +++|.|.+|+  |+ |.|+|.+.|...- .+...+.+..|.|+++
T Consensus       161 ~~~l~I~~v~--D~-G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~  202 (257)
T 1b6u_A          161 QADFPLGPAT--HG-GTYRCFGSFRDSPYEWSNSSDPLLVSVTGN  202 (257)
T ss_dssp             BEEEEEEECC--SC-EEEEEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred             eEEEEecccc--cC-EEEEEEEEcCCCCcccccCCCCEEEEEecc
Confidence            6789999999  75 9999999976332 2222233678888864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=95.73  E-value=0.0033  Score=38.73  Aligned_cols=31  Identities=13%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++.|.+  ++.|.|.+++.+|. +.|.|++.|.-
T Consensus       170 ~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  200 (213)
T 3mj8_L          170 DSKYMA--TSYLTMTADAWKSR-NTFICKVTHGG  200 (213)
T ss_dssp             TTEEEE--EEEEEEESHHHHSC-SCEEEEEEETT
T ss_pred             CCcEEE--EEEEEEeHHHcCCC-CEEEEEEEECC
Confidence            455655  46799999999996 99999999985

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=95.72  E-value=0.0041  Score=38.42  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      ..|.|.+++++|+ +.|.|++.|.--.+
T Consensus       176 s~L~i~~~~~~d~-G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          176 STLSLTKADYESH-NLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEEEEHHHHHTC-CEEEEEEECTTCSS
T ss_pred             EEEEEChHHhccC-CcEEEEEEecCCCC
Confidence            4699999999996 99999999985544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=95.72  E-value=0.0059  Score=39.77  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             eecccEEEe-ecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         14 LSSGDLYVF-NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        14 lpsGeL~I~-nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..++.|.|. +|+.+|. |.|.|++.|.+-..   +. ...|.|.+
T Consensus       280 ~~~~~L~i~~~v~~~d~-G~Y~C~a~N~~G~~---~~-~~~l~V~~  320 (331)
T 3u83_A          280 AQNRTLFFKGPINYSLA-GTYICEATNPIGTR---SG-QVEVNITE  320 (331)
T ss_dssp             EETTEEEECSCCCGGGC-EEEEEEEEETTEEE---EE-EEEECCBC
T ss_pred             ecCcEEEEeCCCccccC-eEEEEEEEeccccc---eE-EEEEEEec
Confidence            468899999 9999995 99999999996432   22 45666664

>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A

Probab=95.71  E-value=0.018  Score=35.99  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecccc------CcEE---ecccceeEEEeccc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKIT------GESQ---ASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lT------ge~~---~S~~~~~l~v~ep~   60 (66)
                      .+||.+.-     +-.|.|.+++.+|. +.|.|++...-.      ....   .-. +.+|+|+...
T Consensus        65 ~~Rfs~~~~~~~~~~sL~I~~lq~~Ds-g~Y~Ca~~~~~~~~~~~~~~~~~~~fG~-GT~ltV~~~~  129 (143)
T 3r0m_A           65 KGRFAISKDNAKNAVYLQMNSLKPEDT-AVYYCAAKWRPLRYSDYPSNSDYYDWGQ-GTQVTVSSEQ  129 (143)
T ss_dssp             TTSEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEECTTCSSSSCCSSCCCEECC-CEEEEEEC--
T ss_pred             CCCEEEEEcCCCCEEEEEECCCChhhC-EEEEEEEEeCCccccccccccceeeeCC-CEEEEEEcCC
Confidence            47898853     22599999999996 999999975321      0111   232 6788887543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=95.68  E-value=0.014  Score=41.87  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCeEEEe---ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~il---psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.+|.+.   ..+.|.|.||+.+|. |.|.|.+.|..-..   +. .+.|.|.+|
T Consensus       335 ~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~g~~---~~-~~~l~V~~~  384 (570)
T 3b43_A          335 SSKFRMSFVESVAVLEMYNLSVEDS-GDYTCEAHNAAGSA---SS-STSLKVKEP  384 (570)
T ss_dssp             SSSEEEEEETTEEEEEEESCCGGGC-EEEEEEEEBTTBCC---EE-EEEECEECC
T ss_pred             CCcEEEEEECCEEEEEECCCCcccC-EEEEEEEEeCCCEE---EE-EEEEEecCC
Confidence            3455543   246799999999996 99999999987432   11 346666543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=95.65  E-value=0.0072  Score=44.05  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.7

Q ss_pred             ecccEEEeecCCCCCCcceeEEeecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .++.|.|.+|+.+|+ |.|.|++.|.
T Consensus       288 ~~~~L~I~~v~~~Ds-G~Y~C~a~N~  312 (527)
T 3qs9_E          288 RILFAFVSSVARNDT-GYYTCSSSKH  312 (527)
T ss_dssp             EEEEEEESSCCGGGC-EEEEEEETTE
T ss_pred             eEEEEEEccCCcccC-eEEEEEEEeC
Confidence            456799999999996 9999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.38
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.29
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.23
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.18
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.12
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	97.96
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.96
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.95
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.92
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.92
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.92
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.9
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.9
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.85
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.84
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.83
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.79
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.78
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.75
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.75
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.75
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.67
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.67
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.65
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.6
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.59
d2avga1	110	Cardiac myosin binding protein C, different domain	97.56
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.55
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.54
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.54
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.52
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.5
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	97.49
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.47
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.45
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.44
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.44
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.43
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.42
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.39
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.37
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.37
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.35
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.35
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.33
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.26
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.25
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	97.12
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.1
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.1
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.08
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.08
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.0
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.99
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.94
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.92
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.91
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.89
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.84
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	96.84
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.81
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.76
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.71
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.7
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	96.69
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.67
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.67
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.67
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.62
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.62
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.6
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	96.58
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.56
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.56
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.54
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.53
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.51
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.5
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.49
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.49
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.47
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.44
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	96.41
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	96.4
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.39
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.38
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.38
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.36
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.34
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.33
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.32
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.29
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.25
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.24
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.21
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.2
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	96.18
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.06
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.03
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.02
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.01
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.99
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.98
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.98
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.95
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.94
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	95.94
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.9
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.88
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	95.86
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	95.86
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.81
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	95.8
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	95.79
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	95.77
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	95.76
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.74
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.72
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.71
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.67
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.64
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.61
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	95.53
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	95.48
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.46
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	95.4
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.39
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.23
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	95.17
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	95.14
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.14
d8faba1	103	Immunoglobulin light chain lambda variable domain,	94.93
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	94.73
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	94.7
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.46
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.32
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.21
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	93.57
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	93.24
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	93.08
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	92.86
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	92.86
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	91.73
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	91.51
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.4
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.01
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	88.91
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	88.78
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	88.55
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	88.5
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	88.42
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	88.27
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	87.97
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	87.93
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	87.46
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	87.36
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	87.12
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	86.75
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	86.75
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	86.29
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	86.14
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	85.94
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	85.82
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	85.7
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	84.74
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	84.13
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	83.95
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	83.88
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	83.85
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.2
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	83.19
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	82.96
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	82.32
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	82.26
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	82.24
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	81.88
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	81.65
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	81.43
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	81.21
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	81.18
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	81.02
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	80.99
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	80.95
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	80.15
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	80.14

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2.2e-07  Score=53.86  Aligned_cols=49  Identities=24%  Similarity=0.406  Sum_probs=36.9

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..++++.+.++|.|.|+|++.+|+ |.|+|++.+. .|+...+. .-.|.|-
T Consensus        49 ~~~~~~~~~~ngSL~I~nl~~~Ds-G~Y~c~v~~~-~g~~~~~~-~~~L~V~   97 (98)
T d1hnga1          49 LKSGAFEILANGDLKIKNLTRDDS-GTYNVTVYST-NGTRILNK-ALDLRIL   97 (98)
T ss_dssp             ESSTTEEECTTSCEEESSCCGGGC-EEEEEEEEET-TCCEEEEE-EEEEEEE
T ss_pred             cCCCeEEECCCccEEEeCCCHHHC-EEEEEEEEeC-CCCEEEEE-EEEEEEE
Confidence            346789999999999999999996 9999999877 34433333 3355553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.7e-07  Score=53.29  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=37.9

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +++..+...|.|.|.+++.+|+ |.|+|++.|...|....-+..-+|.|.+
T Consensus        49 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~g~~~~vt~~i~~~v~~   98 (103)
T d1iray2          49 DNIHFSGVKDRLIVMNVAEKHR-GNYTCHASYTYLGKQYPITRVIEFITLE   98 (103)
T ss_dssp             CSSSEEEETTEEEESSCCGGGC-EEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCcEEEecCCEEEEcccccccC-cEEEEEEEECcCCEEEEEEEEEEEEECC
Confidence            4555667789999999999997 9999999999998754433244555544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4e-07  Score=52.16  Aligned_cols=41  Identities=20%  Similarity=0.457  Sum_probs=35.7

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS   48 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S   48 (66)
                      .+.+|.+..+|.|.|.||+.+|. |.|.|++.|+..++....
T Consensus        40 ~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1          40 ESPKYGLMGRKNLLIFNLSEGDS-GVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             CSSSBCCTTTTCEEECSCCGGGC-EEEEEEEEEECSSSEEEE
T ss_pred             eeeeeecceeeEEEECCCCHHHC-cEEEEEEEEcCCCEEEEE
Confidence            35788899999999999999996 999999999988776544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.18  E-value=1e-06  Score=50.91  Aligned_cols=48  Identities=25%  Similarity=0.486  Sum_probs=35.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEe--cccceeEEEe
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA--SVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~--S~~~~~l~v~   57 (66)
                      ..++.+..+|.|+|.+|+.+|. |.|+|.+.|......+.  +. +++|.|.
T Consensus        52 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~g~~~~~v~~~-~~~l~v~  101 (105)
T d1cs6a2          52 GRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHIDFITKSVFSK-FSQLSLA  101 (105)
T ss_dssp             SSEEECTTTCCEEESSCCGGGC-EEEEEEEEEEETTEEEEEECC-CEEEEEE
T ss_pred             ceeeeecCCCEEeecccccccC-cEEEEEEEECCCCEEEEEEec-cEEEEEc
Confidence            3456667899999999999996 99999999987543322  32 5556554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=1.2e-06  Score=49.36  Aligned_cols=39  Identities=26%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA   47 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~   47 (66)
                      ..++.+.++|.|.|.+++.+|+ |.|+|++.|.-.++...
T Consensus        47 ~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~~~~~~~~   85 (92)
T d1epfa2          47 DVRFIVLSNNYLQIRGIKKTDE-GTYRCEGRILARGEINF   85 (92)
T ss_dssp             CTTEEECTTSCEEETTCCGGGC-EEEEEEEEEGGGTEEEE
T ss_pred             ceeeeeeeeeeEEECCCCHHhC-EEEEEEEEECcCCEEEE
Confidence            3568888899999999999996 99999999987777553

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.4e-06  Score=47.60  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccccc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYS   64 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~~   64 (66)
                      ..|.|.|++.+|+ |.|.|++.|..- +.  +. .+.|.|.++....|
T Consensus        68 ~~L~I~~v~~~D~-G~Y~C~a~N~~G-~~--~~-~~~L~V~~~~~~~p  110 (113)
T d2dava1          68 FEMQIIKAKDNFA-GNYRCEVTYKDK-FD--SC-SFDLEVHESTGTTP  110 (113)
T ss_dssp             EEEEECSCCTTSC-EEEEEEEECSSC-EE--EE-CCEEEEECCCCSCC
T ss_pred             EEEEEccCCHHHC-eEEEEEEEeCCC-EE--EE-EEEEEEEcCCCcCC
Confidence            3599999999996 999999999743 32  33 56999998887766

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.96  E-value=2.3e-06  Score=48.23  Aligned_cols=42  Identities=14%  Similarity=0.154  Sum_probs=33.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .++.|.|.+|+.+|+ |.|+|++.|....  ..|. ...|.|+.|.
T Consensus        47 ~~~~l~i~~v~~~ds-G~Y~C~a~n~~g~--~~S~-~v~l~V~~Ps   88 (88)
T d2fcba2          47 SDPNFSIPQANHSHS-GDYHCTGNIGYTL--YSSK-PVTITVQAPA   88 (88)
T ss_dssp             SCCEEEETTCCGGGC-EEEEEEEEETTEE--EECC-CEEEEECCCC
T ss_pred             cccccccCccCHHHC-CeEEEEEEeCCCC--EEee-eEEEEEeCCC
Confidence            367899999999996 9999999997532  2354 7899998874

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.95  E-value=6.4e-06  Score=46.13  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=26.8

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ++|+.+.. +.|.|.+++.+|+ |.|+|++.|.+
T Consensus        46 ~~~~~~~~-~~L~i~~v~~~d~-G~Y~C~a~N~~   77 (89)
T d1biha4          46 GGRATVTD-SGLVIKGVKNGDK-GYYGCRATNEH   77 (89)
T ss_dssp             SSSEEEET-TEEEESSCCSTTC-EEEEEEEEETT
T ss_pred             cccEEEee-eeEEECCCChhhC-EEEEEEEEECC
Confidence            45777754 4599999999996 99999999986

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.92  E-value=5.2e-06  Score=46.93  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+|+.+|. |.|.|++.|...  ...|. ..+|.|+|
T Consensus        49 ~~~~l~I~~v~~~ds-G~Y~C~a~n~~~--~~~S~-~v~itV~E   88 (89)
T d1fnla2          49 HNSDFHIPKATLKDS-GSYFCRGLVGSK--NVSSE-TVNITITQ   88 (89)
T ss_dssp             ECCCEEESSCCGGGC-EEEEEEEEETTE--EEECC-CEEEEEEC
T ss_pred             cccccEECccceecc-ceEEEEEEeCCC--CeEEe-eEEEEEEe
Confidence            367999999999996 999999998753  34455 78999987

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.8e-06  Score=47.38  Aligned_cols=46  Identities=24%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             eEEEe-ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         10 KYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        10 ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+... .++.|.|.+|+.+|. |.|.|++.|.+ |....|. ..+|.|.+
T Consensus        59 ~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a~N~~-G~~~~s~-~v~l~V~~  105 (110)
T d1f97a2          59 SFTIDPKSGDLIFDPVTAFDS-GEYYCQAQNGY-GTAMRSE-AAHMDAVE  105 (110)
T ss_dssp             CEEECTTTCCEEESSCCGGGC-EEEEEEEECSS-SCCEECC-CEEEEEES
T ss_pred             eEEEeecccceEECCCCccCC-EEEEEEEEECC-CcEEEEE-EEEEEEEe
Confidence            34443 477999999999996 99999999976 5555554 66777765

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=3.1e-06  Score=49.61  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||..++++|.|.|.||+.+|+ |.|.|++.+.
T Consensus        62 ~gR~~l~~ngSL~I~~v~~~D~-G~Y~c~v~~~   93 (107)
T d1l6za1          62 SGREIIYSNGSLLFQMITMKDM-GVYTLDMTDE   93 (107)
T ss_dssp             CSSEEECTTSCEEECSCCGGGC-EEEEEEEEET
T ss_pred             eeEEEEcccccEEEcCCCchhC-EEEEEEEEEC
Confidence            5799999999999999999996 9999999755

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=9.5e-06  Score=46.21  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ++|+.+..++   .|.|.||+.+|+ |.|.|++.|. -|+...   ..+|.|-
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~-~G~~~~---~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDE-GVYTVTVKNP-VGEDQV---NLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTC-EEEEEEEECS-SCEEEE---EEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcC-EEEEEEEEEC-CCEEEE---EEEEEEE
Confidence            5677776543   499999999997 9999999997 455332   3466654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.1e-06  Score=47.17  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++.|.|.+++.+|+ |.|+|++.|.. |+...|. ..+|.|.|
T Consensus        64 ~~~~l~I~~v~~~D~-G~Y~C~a~N~~-G~~~~s~-~v~v~v~e  104 (104)
T d1nbqa2          64 TTGELVFDPLSASDT-GEYSCEARNGY-GTPMTSN-AVRMEAVE  104 (104)
T ss_dssp             TTCCEEESSCCGGGC-CCEEEEEECSS-SCCEECC-CBCCEEEC
T ss_pred             cccceEECCCCcccC-cEEEEEEEECC-CceEEEE-EEEEEEEC
Confidence            478999999999996 99999999986 5555554 55666543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.85  E-value=1.3e-05  Score=45.33  Aligned_cols=47  Identities=19%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             cCCeEEEeec----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilps----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++|.+..+    ..|.|.|++.+|. |.|+|++.|.. |+..  . .++|.|..
T Consensus        51 ~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~--~-~~~L~V~s  101 (102)
T d1fhga_          51 ESRHFQIDYDEEGNCSLTISEVCGDDD-AKYTCKAVNSL-GEAT--C-TAELLVET  101 (102)
T ss_dssp             CSSSEEEEECTTCEEEEEESSCCGGGC-EEEEEEEEETT-EEEE--E-EEEEEEEC
T ss_pred             ceeeEeEEEecCceeeeEecCCCHHhC-EEEEEEEEECC-cEEE--E-EEEEEEEE
Confidence            4567776543    3599999999996 99999999987 4433  2 45777753

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.1e-06  Score=47.02  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+.|.|.||+.+|+ |.|+|++.|..- +. .|+ .+.|+|+
T Consensus        59 ~~~L~I~~v~~~D~-G~Y~C~a~N~~G-~~-~s~-~a~L~Vk   96 (96)
T d2c9aa1          59 IASFNVVNTTKRDA-GKYRCMIRTEGG-VG-ISN-YAELVVK   96 (96)
T ss_dssp             EEEEEECSCCGGGC-SEEEEEEEETTE-EE-EEE-EEEEEEC
T ss_pred             ceEEEECCCCHHHC-eEEEEEEEeCCC-eE-EEE-EEEEEEC
Confidence            46799999999996 999999999643 21 344 5688774

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.83  E-value=7.9e-06  Score=45.93  Aligned_cols=44  Identities=11%  Similarity=0.159  Sum_probs=35.4

Q ss_pred             ccCCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          6 FVGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         6 ~~~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ..+++|.+...|.   |.|.|++.+|+ |.|.|.+.|.       +. .++|.|.|
T Consensus        42 ~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~n~-------~~-sa~l~V~e   88 (89)
T d1tiua_          42 TASPDCEIIEDGKKHILILHNCQLGMT-GEVSFQAANA-------KS-AANLKVKE   88 (89)
T ss_dssp             CSSSSCEEEECSSCEEEECCSCCSCCC-SEECCBCSSC-------BC-CEEEEEEC
T ss_pred             ccceeEEEEeeceeEEEEEcCCChhcC-EEEEEEECce-------EE-EEEEEEEE
Confidence            4567899988886   99999999996 9999998763       22 56888875

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1.6e-05  Score=44.55  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=36.9

Q ss_pred             ccCCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          6 FVGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         6 ~~~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..++++.+.. .+.|.|++|+.+|. |.|+|++.|.+ |+. .|. ..+|.|..+
T Consensus        44 ~~~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~-g~~-~S~-~~~L~V~~~   94 (96)
T d1l6za2          44 QLTERMTLSQNNSILRIDPIKREDA-GEYQCEISNPV-SVR-RSN-SIKLDIIFD   94 (96)
T ss_dssp             CCCTTEEEETTTTEEEECSCCGGGC-EEEEEEEESSS-CCE-ECC-CCEEEECCS
T ss_pred             ccccceeccCCceEEEEeccchhhc-eEEEEEEEeCC-CCe-EEE-eEEEEEEcC
Confidence            3455666654 67899999999996 99999999974 443 344 678888653

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.78  E-value=8.8e-06  Score=45.49  Aligned_cols=40  Identities=28%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +..+|.|.|.+|+.+|+ |.|+|++.|.+ |+...   .+.|.|.
T Consensus        51 ~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~~~---~~~l~V~   90 (91)
T d1cs6a3          51 LSSEPLLHIQNVDFEDE-GTYECEAENIK-GRDTY---QGRIIIH   90 (91)
T ss_dssp             SBSSSEEEECSCCGGGC-EEEEEEEEETT-EEEEE---EEEEEEE
T ss_pred             eeeeeEEEeCCCCccCC-EEEEEEEEECC-CEEEE---EEEEEEE
Confidence            34578999999999996 99999999987 54332   3466663

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.5e-05  Score=42.93  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|.+...|   .|.|.||+.+|+ |.|+|++.|.       +. .++|.|.+
T Consensus        46 ~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~-------~~-~a~l~V~~   89 (90)
T d1x44a1          46 SRYRIRVEGKKHILIIEGATKADA-AEYSVMTTGG-------QS-SAKLSVDL   89 (90)
T ss_dssp             CSEEEEEETTEEEEEEEEECTTTC-SEEEEEETTE-------EE-EEEEEEEC
T ss_pred             ccEEEEEeCCccEEEECccccccC-EEEEEEEecc-------eE-EEEEEEEE
Confidence            457776655   799999999996 9999999773       22 46888865

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=45.66  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG   43 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg   43 (66)
                      +..++....++.|.|.+|+.+|+ |.|.|.+.|...+
T Consensus        50 ~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~   85 (93)
T d1n26a1          50 SHPSRWAGMGRRLLLRSVQLHDS-GNYSCYRAGRPAG   85 (93)
T ss_dssp             CCCEEEEEESSEEEECSCCGGGC-EEEEEESSSSCSC
T ss_pred             ceeeEEecCCCEEEECCCChhcC-EEEEEEECCcccc
Confidence            45677777889999999999996 9999999876544

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.9e-05  Score=43.39  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +..+|.|.|++|+.+|. |.|.|.+.|.. |..  +. .+.|.|
T Consensus        50 ~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~-G~~--~~-~~~l~V   88 (89)
T d1gl4b_          50 MDFNGILTIRNVQPSDA-GTYVCTGSNMF-AMD--QG-TATLHV   88 (89)
T ss_dssp             EEETTEEEECSCCGGGC-EEEEEEEECSS-CEE--EE-EEEEEE
T ss_pred             EeeceEEEEecCCcccC-EEEEEEEEECC-CEE--EE-EEEEEE
Confidence            44689999999999996 99999999987 432  22 346665

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=44.93  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      .++.|.|.+++.+|+ |.|.|++.|...  ...|. ...|.|.++
T Consensus        47 ~~~~l~i~~~~~~ds-G~Y~C~a~n~~~--~~~S~-~v~i~V~~~   87 (89)
T d1f2qa2          47 ENHNISITNATVEDS-GTYYCTGKVWQL--DYESE-PLNITVIKA   87 (89)
T ss_dssp             CSSEEEESSCCGGGC-EEEEEEEEETTE--EEECC-CEEEEEECS
T ss_pred             ccceEEEeeeeeecC-cEEEEEEEeCCC--CeEee-eEEEEEEeC
Confidence            357899999999996 999999999643  23454 889999874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.67  E-value=1e-05  Score=45.49  Aligned_cols=47  Identities=23%  Similarity=0.303  Sum_probs=33.9

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++|.+..+|   .|.|.+++.+|+ |.|+|.+.|.. |+..  . .+.|.|.+.
T Consensus        45 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~--~-~~~l~V~~~   94 (97)
T d1koaa1          45 SVKYMKRYNGNDYGLTINRVKGDDK-GEYTVRAKNSY-GTKE--E-IVFLNVTRH   94 (97)
T ss_dssp             BTTBBCCCSTTEEEEEESCCCSGGG-SCEEEEEEETT-EEEE--E-EECCEEECS
T ss_pred             eeEEEEEecCCeeEEEeCCCceecC-EEEEEEEEECC-CEEE--E-EEEEEEeec
Confidence            4566665544   499999999996 99999999985 4432  2 457777653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.67  E-value=3.4e-05  Score=43.12  Aligned_cols=45  Identities=24%  Similarity=0.371  Sum_probs=33.7

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+.+|.+ .++.|.|.+|+.+|. |.|+|.+.|.. |+.  +. .++|.|.
T Consensus        44 ~~~~~~~-~~~~L~i~~v~~~D~-G~Y~C~a~N~~-G~~--~~-~~~l~V~   88 (89)
T d1cs6a4          44 SQNRIEV-SGGELRFSKLVLEDS-GMYQCVAENKH-GTV--YA-SAELTVQ   88 (89)
T ss_dssp             CCSSEEE-ETTEEEESSCCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEE
T ss_pred             ccceeee-eeeeEEEEeecccCC-EEEEEEEEeCC-CEE--EE-EEEEEEE
Confidence            3456655 689999999999996 99999999985 443  22 4577764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1.8e-05  Score=45.48  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA   61 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~   61 (66)
                      +..|.|+||+.+|+ |.|+|++.+..   ...+. ..+|.|.+|.-
T Consensus        80 ~~sL~I~~v~~~D~-G~Y~C~v~~~~---~~~~~-~v~L~V~~P~~  120 (126)
T d1pkoa_          80 KVALRIQNVRFSDE-GGYTCFFRDHS---YQEEA-AVELKVEDPFY  120 (126)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEEETT---EEEEE-EEEEEEECTTT
T ss_pred             eEEEEEEEEchhHC-eEEEEEEEECC---CEEEE-EEEEEEeCCCE
Confidence            35799999999996 99999998642   22333 45899988643

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.9e-05  Score=41.57  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++|.+.-.+   .|.|.+++.+|. |.|+|++.|.. |+.  +. ..+|.|.+
T Consensus        43 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~--~~-~~~l~V~~   92 (101)
T d2cqva1          43 ESEHMKVENSENGSKLTILAARQEHC-GCYTLLVENKL-GSR--QA-QVNLTVVD   92 (101)
T ss_dssp             CSSSEEEEECSSEEEEEETTCCTTTC-EEEEEEEECSS-CEE--EC-CEEEEEEC
T ss_pred             cCCcEEEEEecceeEEEEeeCCcccC-EEEEEEEEECC-CEE--EE-EEEEEEEe
Confidence            45677665433   499999999996 99999999974 332  32 45888876

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.9e-05  Score=43.60  Aligned_cols=38  Identities=11%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             CeEEEeecc--cEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521          9 GKYVVLSSG--DLYVFNATPNDGYKSYRCRTVNKITGESQA   47 (66)
Q Consensus         9 ~ry~ilpsG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~   47 (66)
                      +|.....+|  .|.|.||+.+|+ |.|.|++.+.--+..+.
T Consensus        55 ~r~~~~~~g~~sL~I~~v~~~D~-G~Y~C~V~~~~~~~~~~   94 (105)
T d1dr9a1          55 NRTIFDITNNLSIVILALRPSDE-GTYECVVLKYEKDAFKR   94 (105)
T ss_dssp             TTEEEESTTTTEEEECSCCGGGC-EEEEEEEEECCTTSCEE
T ss_pred             eeeeeccCCcEEEEECcCChHHC-eEEEEEEEeCCCCCeEE
Confidence            455665555  599999999996 99999998776666544

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.60  E-value=4.5e-05  Score=42.24  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ..+|.|.|.+|+.+|. |.|.|.+.|..
T Consensus        55 ~~~~~L~i~~v~~~D~-G~Y~C~a~N~~   81 (94)
T d1biha1          55 KDEGSLVFLRPQASDE-GHYQCFAETPA   81 (94)
T ss_dssp             TTSCCEEESSCCGGGC-EEEEEEEEETT
T ss_pred             ccceEEEEeccChhcC-eEEEEEEEeCC
Confidence            4689999999999996 99999999986

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.5e-05  Score=42.85  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.+|.+...|   .|.|.|++.+|+ |.|.|++.|.       +. .++|.|.|
T Consensus        50 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~n~-------~~-s~~l~V~E   94 (94)
T d1pd6a_          50 GSKYIFESIGAKRTLTISQCSLADD-AAYQCVVGGE-------KC-STELFVKE   94 (94)
T ss_dssp             SSSSEEEEETTEEEEEECSCSSSSC-EEEEEEETTE-------EE-CCEEEEEC
T ss_pred             eeeEeeeccCCeEEeecCCCCceec-EEEEEEEeeE-------EE-EEEEEEEC
Confidence            4566665544   499999999996 9999999763       22 46888875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.4e-05  Score=44.02  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.|.|.+|+.+|. |.|.|++.|..-..   +. ...|.|.++
T Consensus        72 ~~L~I~~v~~~D~-G~Y~C~a~N~~G~~---~~-~~~L~V~~~  109 (110)
T d2avga1          72 FELHITDAQPAFT-GGYRCEVSTKDKFD---CS-NFNLTVHEA  109 (110)
T ss_dssp             EEEEEESCCTTCC-EEEEEEEEETTEEE---EE-EEEEEEESC
T ss_pred             EEEEEeccCHHHC-cEEEEEEEECCCeE---EE-EEEEEEEec
Confidence            4699999999996 99999999874322   33 568888875

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=6.8e-05  Score=41.77  Aligned_cols=45  Identities=29%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             cCCeEEEeecc---cEEEeecCC-CCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          7 VGGKYVVLSSG---DLYVFNATP-NDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         7 ~~~ry~ilpsG---eL~I~nv~~-~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .++||.+...+   .|.|.||+. +|+ |.|.|.+.|.+ |+...   ...|.|
T Consensus        52 ~~~~~~~~~~~~~~~L~I~~v~~~~D~-G~Y~C~A~N~~-G~~~~---~~~L~V  100 (101)
T d3b5ha1          52 SESRFFVSSSQGRSELHIENLNMEADP-GQYRCNGTSSK-GSDQA---IITLRV  100 (101)
T ss_dssp             GGGTEEEEEETTEEEEEECSCCTTTSS-EEEEEEEEETT-EEEEE---EEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEeccccccCC-EEEEEEEEECC-CEEEE---EEEEEE
Confidence            35678877655   799999996 575 99999999986 44322   335555

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=4.4e-05  Score=42.61  Aligned_cols=48  Identities=19%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+|+.+..     +..|.|.||+.+|+ +.|.|++...-.+... +..+.+|.|+
T Consensus        65 ~~r~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~~~~~~-~~~~~~ltVt  117 (118)
T d1qfoa_          65 RGRAELMGNMDHKVCNLLLKDLKPEDS-GTYNFRFEISDSNRWL-DVKGTTVTVT  117 (118)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEECC-CCEEE-CSSCEEEEEE
T ss_pred             CCCeEEEEeCcCCEEEEEECCCChhHC-EEEEEEEEeCCCCeEE-cCCCEEEEEe
Confidence            56787752     33499999999996 9999999766544443 3336788876

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=6.1e-05  Score=42.89  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +|..+..     +..|.|.||+.+|+ |.|.|++.++-....+ +. ..+|.|.|
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~~~~~~~-~~-~v~L~V~e  119 (119)
T d1neua_          68 ERIQWVGDPSWKDGSIVIHNLDYSDN-GTFTCDVKNPPDIVGK-TS-QVTLYVFE  119 (119)
T ss_dssp             TCEEECCBGGGTBCCEEECSCCGGGC-EEEEEEEEC----CCE-EE-EEEEEEEC
T ss_pred             eEEEEEEECCCCEEEEEECCCChHHC-EEEEEEEEECCCcCce-EE-EEEEEEEC
Confidence            5666532     24699999999996 9999999875432222 22 45777765

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.52  E-value=2.7e-05  Score=43.30  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             CCeEEEe---ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il---psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++++.+.   ..+.|.|.+|+.+|+ |.|+|.+.|.. |+.  +. .+.|.|.|
T Consensus        43 ~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~-G~~--~~-~~~l~V~e   91 (91)
T d1tnna_          43 SARHQVTTTKYKSTFEISSVQASDE-GNYSVVVENSE-GKQ--EA-EFTLTIQK   91 (91)
T ss_dssp             SSSCEEEECSSEEEEECSSCCSCCC-EEEEEECBCSS-CBC--CE-EEEEECCC
T ss_pred             ccceeeeeecceeEEeecCCCHHHC-EEEEEEEEECC-CEE--EE-EEEEEEEC
Confidence            4454443   478899999999996 99999999985 443  22 35777654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.8e-05  Score=43.05  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=29.0

Q ss_pred             EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      |.|.+|+.+|+ |.|+|.+.|.. |.  .++....|.|+|
T Consensus        67 L~I~~v~~~D~-G~Y~C~A~N~~-G~--~~s~~~~l~V~e  102 (104)
T d2aw2a1          67 LHFEPVLPNDN-GSYRCSANFQS-NL--IESHSTTLYVTD  102 (104)
T ss_dssp             EEESSCCGGGC-EEEEEEEEETT-EE--EECCCEEEEEEC
T ss_pred             EEEccccHHHC-CeEEEEEEcCC-Ce--EEEEEEEEEEEE
Confidence            99999999996 99999999985 33  233367888876

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.8e-05  Score=41.75  Aligned_cols=32  Identities=16%  Similarity=-0.049  Sum_probs=26.4

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .......++.|.|.||+.+|+ |.|.|++.|..
T Consensus        47 ~~~~~~~~~~L~i~~v~~~D~-G~Y~C~Asn~~   78 (90)
T d1gsma1          47 AVQSDTGRSVLTVRNASLSAA-GTRVCVGSCGG   78 (90)
T ss_dssp             CEEEESSEEEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             eeeccCceeeEEcCccChhhC-CcEEEEEEeCC
Confidence            344455678899999999996 99999999854

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.47  E-value=0.0001  Score=43.05  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             CCeEEEeecccEEEeecCCCCCC--cceeEEeeccccCcE
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGY--KSYRCRTVNKITGES   45 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~--~~Y~C~~~~~lTge~   45 (66)
                      ..++.+.++|.|.|.||+.+|.-  +.|.|++.|....+.
T Consensus        54 ~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          54 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             eeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence            34678889999999999999962  369999999986553

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=8e-05  Score=42.75  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ...+.|.|.+|+.+|. |.|.|.+.|. +|..+.+   ..|.|.+.
T Consensus        56 ~~~~~L~I~~v~~~D~-G~Y~C~a~N~-~g~~~~~---~~L~V~~~   96 (101)
T d1iray1          56 QHKEKLWFVPAKVEDS-GHYYCVVRNS-SYCLRIK---ISAKFVEN   96 (101)
T ss_dssp             EETTEEEETTCCGGGC-EEEEEEEEET-TEEEEEE---EEEEEECC
T ss_pred             ccCCEEEeccceecCC-EEEEEEEECC-CCeEEEE---EEEEEEeC
Confidence            4578999999999996 9999999986 5554443   47777653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00012  Score=40.20  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +.|.|.+++.+|. +.|+|.+.|.. |. ..|. .++|.|+
T Consensus        54 ~~L~I~~~~~~D~-G~Y~C~a~N~~-G~-~~S~-~~~l~V~   90 (91)
T d1rhfa1          54 GFLSLKSVERSDA-GRYWCQVEDGG-ET-EISQ-PVWLTVE   90 (91)
T ss_dssp             EEEEESSCCGGGC-EEEEEEESSCT-TC-EECC-CEEEEEE
T ss_pred             eeEEECCCCcccC-EEEEEEEEECC-CC-EEEE-EEEEEEE
Confidence            4699999999995 99999999974 33 2344 6788875

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=8.7e-05  Score=43.50  Aligned_cols=50  Identities=14%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             cCCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccccC-cEEecccceeEEEec
Q psy10521          7 VGGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~lTg-e~~~S~~~~~l~v~e   58 (66)
                      .++||.+.  +++   .|.|.|++.+|. +.|.|.+...-.+ +....+ +.+|+|+|
T Consensus        58 ~~~rf~~~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~~~~~~~~~FG~-GT~L~V~~  113 (114)
T d3bp5a1          58 QDARFQIIQLPNRHDFHMNILDTRRNDS-GIYLCGAISLHPKAKIEESP-GAELVVTE  113 (114)
T ss_dssp             SCTTEEEEECTTSSEEEEEESSCCGGGC-EEEEEEEECSSSSCCCEECC-CEEEEEEC
T ss_pred             ccCcceEEEeCCCCEEEEEECccCcCCC-eEEEEEEEeCCCCcceEECc-CeEEEEEE
Confidence            35678775  333   399999999996 9999998754433 455555 88999986

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=4.8e-05  Score=42.66  Aligned_cols=37  Identities=35%  Similarity=0.537  Sum_probs=28.4

Q ss_pred             ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..+.|.|.+|+.+|. |.|+|++.|.. |+...   ...|.|
T Consensus        61 ~~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~~~---~~~l~V   97 (100)
T d1qz1a3          61 DSSELTIRNVDKNDE-AEYVCIAENKA-GEQDA---SIHLKV   97 (100)
T ss_dssp             TSCEEEECSCCGGGC-EEEEEEEEETT-EEEEE---EEEEEE
T ss_pred             CceEEEeCCCCcccC-EEEEEEEEECC-CEEEE---EEEEEE
Confidence            467899999999995 99999999986 54332   345655

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2e-05  Score=43.69  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             CeEEEe-ecccEEEeecCCCCCCcceeEEeecc
Q psy10521          9 GKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         9 ~ry~il-psGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      ++..+. .+|.|.|+|++.+|. |.|+|++.|.
T Consensus        51 ~~~~~~~~~~sL~I~~l~~~Ds-G~Y~c~~~n~   82 (93)
T d1ccza1          51 NRVYLDTVSGSLTIYNLTSSDE-DEYEMESPNI   82 (93)
T ss_dssp             TSEEECTTTCCEEECSCCGGGC-EEEEEECTTC
T ss_pred             ceEEEcCCeeEEEEEecChhhC-EEEEEEEECC
Confidence            344443 478999999999996 9999998764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=8.1e-05  Score=41.60  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +-++.|.|.||+.+|. |.|+|.+.|..--.
T Consensus        62 ~~~~tL~I~~v~~~D~-G~Y~C~a~n~~g~~   91 (102)
T d1f97a1          62 FSSSGITFSSVTRKDN-GEYTCMVSEEGGQN   91 (102)
T ss_dssp             EETTEEEESCCCGGGC-EEEEEEEEETTSSS
T ss_pred             ecCCEEEEeECCccCC-EEEEEEEEECCCCE
Confidence            3567899999999995 99999999986443

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=8.7e-05  Score=41.03  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=26.0

Q ss_pred             eEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.....+.|.|.+|+.+|+ |.|.|++.|..
T Consensus        47 ~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~   77 (90)
T d1vcaa2          47 VTNEGTTSTLTMNPVSFGNE-HSYLCTATCES   77 (90)
T ss_dssp             EEEETTEEEEEESSCCGGGC-SEEEEEEEETT
T ss_pred             eeeecCCcEEEEeccccccc-ceEEEEEEeCC
Confidence            34444578899999999996 99999999986

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=8.3e-05  Score=42.19  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSI   56 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v   56 (66)
                      +..|.|+||+.+|+ |.|.|++.++-. |+.........|.|
T Consensus        68 ~~sL~I~~v~~~D~-G~Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          68 SWTLRLHNLQIKDK-GLYQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             TTEEEECSCCGGGC-EEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             eEEEEECCCChhHC-EEEEEEEEecCCCceEEEEcceEEEEE
Confidence            56699999999996 999999975543 55444444556665

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.37  E-value=0.00016  Score=40.37  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .|.|.+++.+|. |.|+|.+.|.. |+.  +. .++|.|..
T Consensus        62 ~L~I~~~~~~D~-G~Y~c~a~N~~-G~~--~~-~~~L~V~~   97 (98)
T d1g1ca_          62 ELVIRDVTGEDS-ASIMVKAINIA-GET--SS-HAFLLVQA   97 (98)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEEC
T ss_pred             EEEeccCccccC-EEEEEEEEECC-cEE--EE-EEEEEEEE
Confidence            699999999996 99999999964 442  32 45777753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.37  E-value=4.2e-05  Score=42.37  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +|+-+...++.|+|.+|+.+|. |.|+|++.|.     ..|. +.+|.|.
T Consensus        42 ~g~~~~~~~~~l~i~~v~~~ds-G~Y~C~a~ns-----~~S~-~v~l~V~   84 (85)
T d2fcba1          42 NGNLIPTHTQPSYRFKANNNDS-GEYTCQTGQT-----SLSD-PVHLTVL   84 (85)
T ss_dssp             TTEECTTCCSSEEEEECCGGGC-EEEEEECTTS-----BCCC-CEEEEEE
T ss_pred             ccccccccccceEEeeccccCC-cEEEEECCCC-----cccc-cEEEEEE
Confidence            4444445689999999999996 9999999874     2344 7777775

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.9e-05  Score=42.09  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=24.3

Q ss_pred             eecccEEEeecCCCCCCcceeEEeecccc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.++.|.|.||+.+|. |.|+|.+.|..-
T Consensus        65 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~G   92 (105)
T d1nbqa1          65 FLPTGITFKSVTREDT-GTYTCMVSEEGG   92 (105)
T ss_dssp             EETTEEECSCCCTTSC-SEEEEEEEETTS
T ss_pred             ecCceEEEecccccce-eeEEEEEEECCC
Confidence            3467899999999995 999999999863

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.35  E-value=9e-05  Score=40.96  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=32.0

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +|+.+....+.|.|.+++.+|+ |.|+|++.|-     ..|. +.+|.|
T Consensus        43 ~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~a~~s-----~~S~-~v~L~V   84 (84)
T d1fnla1          43 NESLISSQASSYFIDAATVNDS-GEYRCQTNLS-----TLSD-PVQLEV   84 (84)
T ss_dssp             TTEEEESSCSEEEESSCCGGGC-EEEEEECSSS-----CCCC-CEEEEE
T ss_pred             eceeeeecceeeEecCCcccCC-EEEEEEccCC-----Cccc-cEEEEC
Confidence            5666666788999999999997 9999999763     2344 666654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.00018  Score=40.05  Aligned_cols=45  Identities=22%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..++.+..    .+.|.|.+++.+|. |.|+|++.|.. |+.. +. ...|.|
T Consensus        47 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~-~~-tv~l~V   95 (97)
T d1epfa1          47 QQRISVVWNDDDSSTLTIYNANIDDA-GIYKCVVTAED-GTQS-EA-TVNVKI   95 (97)
T ss_dssp             SSSEEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETT-TEEE-EE-EEEEEE
T ss_pred             cccEEEEeecCcceEEEcccCchhhc-eEEEEEEEeCC-CcEE-EE-EEEEEE
Confidence            34555543    35699999999995 99999999986 5532 22 345554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.26  E-value=0.0001  Score=41.15  Aligned_cols=28  Identities=39%  Similarity=0.503  Sum_probs=23.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      .+.|.|.|++.+|. |.|.|.+.|.+ |+.
T Consensus        73 ~~~L~i~~~~~~D~-G~Y~C~a~N~~-G~~  100 (109)
T d2fdbp2          73 IEVLYIRNVTFEDA-GEYTCLAGNSI-GIS  100 (109)
T ss_dssp             EEEEEECSCCGGGC-EEEEEEEECSS-CEE
T ss_pred             cEEEEECCCCHHHC-eEEEEEEEECC-CEE
Confidence            47799999999996 99999999984 443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=5.1e-05  Score=41.83  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +|.-+...++.|.|.+|+.+|+ |.|+|++.|.     +.|. +..|.|.
T Consensus        39 ~~~~~~~~~~~l~i~~v~~~d~-G~Y~C~a~~s-----~~S~-~v~l~V~   81 (82)
T d1f2qa1          39 NGSLSEETNSSLNIVNAKFEDS-GEYKCQHQQV-----NESE-PVYLEVF   81 (82)
T ss_dssp             TTEECSCCSSEEEECSCCGGGC-EEEEEECTTS-----SCCC-CEEEEEE
T ss_pred             eeeeeecccceeEECCCChhhC-CcEEEEecCC-----CCcc-cEEEEEE
Confidence            3444445678899999999996 9999999874     2354 6777775

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=9.5e-05  Score=40.67  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.-.+..++.|.|.+|+.+|+ |.|.|.+.|..
T Consensus        36 ~~~~~~~~~~~l~i~~v~~~Ds-G~Y~C~a~N~~   68 (84)
T d2nxyb2          36 PRGKNIQGGKTLSVSQLELQDS-GTWTCTVLQNQ   68 (84)
T ss_dssp             TTCCEEEESSEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             ecccceeeeeeeeeeecccccc-cEEEEEEEeCC
Confidence            3445566788899999999996 99999999984

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.10  E-value=0.00048  Score=39.90  Aligned_cols=42  Identities=29%  Similarity=0.222  Sum_probs=34.2

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +..|.|.+++.||. +.|.|.....-..+...=+ +.+|+|.+.
T Consensus        71 ~~~L~I~~~~~~DS-a~YyCa~~~~~~~~~~FG~-GT~LtV~~~  112 (114)
T d1ogae1          71 SFPLTVTSAQKNPT-AFYLCASSSRSSYEQYFGP-GTRLTVTED  112 (114)
T ss_dssp             BCCEEECSCCSCCC-EEEEEEEESSTTSCCEECC-CEEEEEESC
T ss_pred             eEEEEECcCCcCCc-eeEEEeeccCCCCccEECC-CEEEEECCC
Confidence            34699999999996 9999998877666665544 889999875

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=41.96  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=27.2

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +.|.|.+++.+|. |.|.|++.|++ |+...   ..+|.|.+
T Consensus        63 ~~L~i~~~~~~D~-G~Y~C~A~N~~-G~~~~---~i~v~v~~   99 (107)
T d1he7a_          63 GCLRLNQPTHVNN-GNYTLLAANPF-GQASA---SIMAAFMD   99 (107)
T ss_dssp             EEEEEESCCGGGC-EEEEEEEEETT-EEEEE---EEEECCCS
T ss_pred             eEEEECcccHHHC-cEEEEEEEeCC-CEEEE---EEEEEEEc
Confidence            4599999999995 99999999997 44322   23555544

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.08  E-value=0.00019  Score=40.16  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=23.8

Q ss_pred             eecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         14 LSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ...+.|.|.+++.+|. |.|+|.+.|.+
T Consensus        59 ~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   85 (97)
T d3dara1          59 NQHWSLIMESVVPSDK-GNYTCVVENEY   85 (97)
T ss_dssp             GGGTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CCcEEEEECCCCcccC-EEEEEEEEECC
Confidence            3467899999999996 99999999985

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.08  E-value=0.00025  Score=39.65  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .+.|.|.+++.+|. |.|+|++.|.+-
T Consensus        60 ~~~L~I~~~~~~D~-G~Y~C~a~N~~G   85 (97)
T d1biha3          60 GKRLLFKTTLPEDE-GVYTCEVDNGVG   85 (97)
T ss_dssp             TSEEEESSCCGGGC-EEEEEEECCSSS
T ss_pred             CCEEEEEecccccc-EEEEEEEEECCC
Confidence            45799999999995 999999999874

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.00031  Score=39.63  Aligned_cols=47  Identities=19%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             CCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+||...  +++   .|.|.+++.+|. +.|.|++...-.++...-+ +.+|+|
T Consensus        43 ~~rf~~~~~~~~~~~sL~I~~~~~~Ds-g~YyCa~~~~~~~~~~FG~-GT~L~V   94 (94)
T d2gj6d1          43 DGRFTAQLNKASQYVSLLIRDSQPSDS-ATYLCAVTTDSWGKLQFGA-GTQVVV   94 (94)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEESSTTSCCEECC-CEEEEE
T ss_pred             CCcEEEEecCCCCEEeEEeeccccCcC-ccceeeEecCCCCceEECc-CEEEEc
Confidence            4566653  333   499999999996 9999998876566666554 778876

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.99  E-value=0.00034  Score=40.45  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CCeEEEe-ec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL-SS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il-ps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+... ++   -.|.|.+++.+|. +.|.|.+...-..+...-. +.+|+|.|
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~FG~-GT~LtV~d  112 (112)
T d1kgce1          60 SDRFFAERPEGSVSTLKIQRTQQEDS-AVYLCASSLGQAYEQYFGP-GTRLTVTE  112 (112)
T ss_dssp             STTEEEECTTSSCEEEEESSCCGGGC-EEEEEEEESSTTSCCEECC-CEEEEEES
T ss_pred             CCceeeECCcCCEEEEEECCCCcCCC-EEEEEeeeCCCCCCcEECc-CEEEEEeC
Confidence            4566664 32   3499999999996 9999998764444555444 88999976

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00042  Score=39.91  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=33.2

Q ss_pred             CCeEEEee---cc--cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLS---SG--DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilp---sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .|||.+.-   .|  .|.|.||+.+|. +.|.|++...-...-.... +.+|+|
T Consensus        62 ~~R~~~~~~~~~~~~~Lti~~l~~~Ds-g~Y~Cav~~~~~~~~~~~~-~~~L~V  113 (113)
T d1smoa_          62 VGRIILEDYHDHGLLRVRMVNLQVEDS-GLYQCVIYQPPKEPHMLFD-RIRLVV  113 (113)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCTTSCCEECSC-EEEEEC
T ss_pred             CCeEEEEEECCCCEEEEEEccCCcccC-ceEEEEEECCCCCCEEEEC-CEEEEC
Confidence            36787742   23  388999999996 9999998776555444443 667765

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00044  Score=39.38  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+|+.+.  ++.   .|.|.|++.+|. +.|.|++...-........ .-.|.|
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~l~~~Ds-G~Y~C~v~~~~~~~~~~~~-~~~l~V  107 (108)
T d1hkfa_          56 TSRFTIWDDPDAGFFTVTMTDLREEDS-GHYWCRIYRPSDNSVSKSV-RFYLVV  107 (108)
T ss_dssp             STTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECTTTCCEEEEE-EEEEEE
T ss_pred             eeeEeeeeeCCCCEEEEEEhhhCCCCC-EEEEEEEecCCCCcEEEee-EEEEEE
Confidence            4666663  332   489999999996 9999999876555544333 445555

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.91  E-value=0.00045  Score=40.06  Aligned_cols=40  Identities=13%  Similarity=0.092  Sum_probs=30.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..|.|.|++.||. +.|.|.+... +.....-. +.+|+|.+.
T Consensus        73 ~~L~I~~~~~~Ds-g~YyCa~~~~-~~~~~FG~-GT~L~V~p~  112 (115)
T d1i9ea_          73 FHLRKASVHWSDS-AVYFCAVSGF-ASALTFGS-GTKVIVLPY  112 (115)
T ss_dssp             CCEEESSCCGGGC-EEEEEEEEET-TEEEEECC-CEEEEEECC
T ss_pred             EEEeccccccccc-ceecccccCC-CCCCEECC-CEEEEEecC
Confidence            4699999999996 9999987633 33344444 889999863

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.89  E-value=0.00053  Score=39.77  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .+|+.+..+   -.|.|++++.||. +.|.|++.+.-.+....=. +.+|+|
T Consensus        60 ~~r~~~~~~~~~~~L~I~~~~~~Ds-a~YyCA~~~~~~~~~~FG~-GT~ltV  109 (111)
T d1rzfl1          60 PDRFSGSKSGTSATLGITGLQTGDE-ADYYCGTWDSSLSAVVFGG-GSKVTV  109 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEEEETTTTEEEEBC-CEEEEE
T ss_pred             ccceeeeCCCCEeeeEEeeeccccC-cceEEeecCCCCCCCEECC-CeEEEE
Confidence            345655443   4599999999996 9999999876555554433 677776

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00019  Score=40.64  Aligned_cols=38  Identities=13%  Similarity=0.033  Sum_probs=28.2

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.|.|.+++.+|+ |.|+|++.|.+-..   +. ..+|.|.++
T Consensus        62 ~~L~i~~~~~~D~-G~Y~C~a~N~~G~~---~~-~~~v~V~~~   99 (105)
T d1wwca_          62 GCLLFNKPTHYNN-GNYTLIAKNPLGTA---NQ-TINGHFLKE   99 (105)
T ss_dssp             EEEEEESCCGGGC-EEEEEEEEETTEEE---EE-EEEECCSCC
T ss_pred             EEEEEeecccccc-eEEEEEEEcCCCEE---EE-EEEEEEEeC
Confidence            4599999999996 99999999985422   22 346666553

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00025  Score=39.18  Aligned_cols=29  Identities=28%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ....+.|.|.+++.+|.-+.|+|++.|.+
T Consensus        52 ~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1          52 GLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             eccceeEEEccccccccceEEEEEEEcCC
Confidence            34567899999999997448999999987

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.81  E-value=0.00067  Score=39.30  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+++....++   -|.|.+|+.||. +.|.|+..+.-+.+...=. +.||+|-
T Consensus        61 ~~~~~~~~~~~~~~L~I~~l~~~Ds-a~YyCa~~~~~~~~~~FG~-GTkLtVl  111 (112)
T d1lgva1          61 SDRFSGSKSGNSASLTISGLQAEDE-ADYYCSSYDGSSTSVVFGG-GTKLTVL  111 (112)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-EEEEEEEECSSSSSEEEBC-CEEEEEC
T ss_pred             cccEEEECCCCEeeEEeCcCccccC-EEEEEeeecCCCCCCEeCc-CEEEEEC
Confidence            3455554433   399999999996 9999999887777765544 7788873

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.76  E-value=0.0012  Score=38.20  Aligned_cols=46  Identities=22%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+.-++.   |.|.|++.||. +.|.|++.+   +....=+ +.+|.|++
T Consensus        58 ~~~~~~~~s~~~~~L~I~~~~~~Ds-A~YyCa~~~---~~~~FG~-GT~LtVk~  106 (106)
T d1a0ql1          58 PSRFRGSGSGRDYSFSISNLEPEDI-ATYYCLQYY---NLRTFGG-GTKLEIKR  106 (106)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGC-SEEEEEECS---SSCEECC-CEEEEECC
T ss_pred             CcceEeecCCCEeeeEehhhcccCC-EeEEEEEeC---CCCeECC-CeEEEEcC
Confidence            34666655554   99999999996 999999753   3333333 78888863

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00028  Score=39.49  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             cEEEeecCCCCCCcceeEEeecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .|.|+||+.+|+ +.|.|++.++
T Consensus        68 sL~I~~l~~~Ds-G~Y~C~v~~~   89 (97)
T d2nxyb1          68 PLIIKNLKIEDS-DTYICEVEDQ   89 (97)
T ss_dssp             CEEECSCCGGGC-EEEEEEETTE
T ss_pred             EEEECCCChHHC-EEEEEEEecC
Confidence            599999999996 9999999764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00058  Score=39.61  Aligned_cols=42  Identities=12%  Similarity=0.017  Sum_probs=32.6

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcE-EecccceeEEEecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~-~~S~~~~~l~v~ep   59 (66)
                      -.|.|.|++.+|. +.|.|+......+-. ..--.+.+|.|.||
T Consensus        75 ~~L~I~~l~~~Ds-a~YyCa~~~~~~~~~~~~fG~GT~L~V~dp  117 (117)
T d1dqta_          75 VNLTIQGLRAVDT-GLYLCKVELMYPPPYFVGMGNGTQIYVIDP  117 (117)
T ss_dssp             EEEEECSCCGGGC-EEEEEEEEEEESSSCEEEECSCEEEECCCC
T ss_pred             EEEEhhcCccccC-EeEEEEEecCcCCCceeEECCCEEEEEECC
Confidence            4799999999996 999999987666433 22233889999887

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.00026  Score=39.11  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=25.9

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +.++.+..   .+.|.|.+++.+|+ |.|.|++.|..-
T Consensus        46 ~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~N~~G   82 (93)
T d1wiua_          46 APELLVDAKSSTTSIFFPSAKRADS-GNYKLKVKNELG   82 (93)
T ss_dssp             STTSEEEEETTEEEEECTTBCGGGC-EEEEEEEEETTE
T ss_pred             eeeeeecccccceeecccccccccc-EEEEEEEEECCC
Confidence            34444443   34699999999996 999999999753

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00071  Score=39.36  Aligned_cols=41  Identities=10%  Similarity=0.022  Sum_probs=32.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEE-ecccceeEEEecc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQ-ASVFQTRLSITGF   59 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~-~S~~~~~l~v~ep   59 (66)
                      .|.|.|++.+|. +.|.|++.....+... .--.+.+|.|.||
T Consensus        76 ~L~I~~l~~~Ds-a~YyCa~~~~~~~~~~~~fG~GT~L~V~d~  117 (118)
T d1i8lc_          76 NLTIQGLRAMDT-GLYICKVELMYPPPYYLGIGNGAQIYVIDP  117 (118)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEEEESSSCEEEECCCEEEECCCC
T ss_pred             EEEeeccccCCC-EEEEEeEecccCCCceeEECCCEEEEEEcC
Confidence            699999999996 9999999887776432 2223889999887

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.67  E-value=0.00058  Score=39.47  Aligned_cols=41  Identities=29%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~e   58 (66)
                      +..|.|.+++.+|. +.|.|++...- ++++..-. +.+|+|.+
T Consensus        68 ~~~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~FG~-GT~L~V~p  109 (110)
T d2esvd1          68 SSTLILPHATLRDT-AVYYCIVVRSSNTGKLIFGQ-GTTLQVKP  109 (110)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEEESCSSCCCCCCC-CEEEEEEC
T ss_pred             eeeehhcccccCCc-eEEEEEEeCCCCCCccEECC-CEEEEEEe
Confidence            44599999999996 99999987543 44554444 78999975

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.67  E-value=0.0025  Score=37.07  Aligned_cols=46  Identities=24%  Similarity=0.275  Sum_probs=34.2

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++....+|   .|.|.|++.+|. +.|.|+..+  .++...-. +.+|.|++
T Consensus        60 ~~~~~~~~~~~~~L~i~~l~~~Ds-a~YyCA~~~--~~~~~FG~-GT~LtVk~  108 (108)
T d1jhll_          60 SRFSGSGSGTDFTLTISSLEPEDF-AMYICQQHN--EYPWTFGG-GTKLEIKR  108 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCC-SEEEEEECS--SSSCEECC-CEEEEECC
T ss_pred             ccccccCCCCEEEeEeeeeEeccc-eEEEEeeCC--CcccEECC-CeEEEEcC
Confidence            455566666   699999999996 999998765  34455554 78888863

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.62  E-value=0.0011  Score=38.58  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.+.-   +..|.|.+++.||. +.|.|.+...-+++...-. +.||+|.+
T Consensus        57 ~~rf~~~~~~~~~~L~I~~l~~~Ds-a~YyCA~~~~~~~~~~FG~-GT~L~Vl~  108 (108)
T d1nfde1          57 PERFSGSTSGTTATLTISGAQPEDE-AAYYCLSSYGDNNDLVFGS-GTQLTVLR  108 (108)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGC-SEEEEEEEETTTTEEEECC-CEEEEEEC
T ss_pred             cceeeecCCCCEeeeeEcCccccCC-ceEEEEeecCCCCCcEECC-CeEEEEeC
Confidence            34666643   45799999999996 9999998876666665554 88998853

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00041  Score=38.94  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             CCeEEEee------cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|..+..      +..|.|.||+.+|+ |.|.|++.+.
T Consensus        73 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~  110 (124)
T d1eaja_          73 KGRVHFTSNDLKSGDASINVTNLQLSDI-GTYQCKVKKA  110 (124)
T ss_dssp             TTTEEECCSCGGGTBCCEEECSCCGGGC-EEEEEEEEET
T ss_pred             ccceEEEccCCCCCEEEEEEcccEEccC-EEEEEEEEEC
Confidence            35666643      24799999999996 9999999865

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.60  E-value=0.001  Score=39.03  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +++...-++   .|.|.+|+.||. +.|.|+....-.++...=. +.||+|-
T Consensus        59 ~~~~~~~~~~~~~L~I~~l~~~Ds-avYyCA~~~~~~~~~~FG~-GTkLtVl  108 (109)
T d1w72l1          59 ERFSGSNSGNMATLTISRVEAGDE-ADYYCQVWDSRTDHWVFGG-GTDLTVL  108 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEETTTTEEEECC-CEEEEEC
T ss_pred             eeEeeecCCCccceEEeeeccCCC-EEEEEEecCCCCCCcEECC-CeEEEEC
Confidence            445443333   678999999996 9999999877777766554 7888873

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00068  Score=37.75  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=29.0

Q ss_pred             EeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +++.++  |.+|+.+|. |.|+|++.|.. |+.  +. ...|.|..|
T Consensus        45 ~~~~~~--~~~v~~~d~-G~Y~C~A~N~~-G~~--~~-~~~l~V~~P   84 (84)
T d2oz4a3          45 PLPIGE--SVTVTRDLE-GTYLCRARSTQ-GEV--TR-EVTVNVLSP   84 (84)
T ss_dssp             ECCTTS--CEECCGGGC-EEEEEEEEETT-EEE--EE-EEEEEEECC
T ss_pred             ceeeee--eeccccCCC-CEEEEEEEcCC-CEE--EE-EEEEEEECC
Confidence            456665  468889995 99999999987 553  32 457777655

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.56  E-value=0.00074  Score=39.24  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      -.|.|.+++.+|. +.|.|.+......+...-. +.+|+|.|
T Consensus        74 ~~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~FG~-GT~LtV~e  113 (113)
T d1nfdb1          74 SEMNMSALELEDS-AMYFCASSLRWGDEQYFGP-GTRLTVLE  113 (113)
T ss_dssp             EEEECCSCCGGGC-EEECEEEESSSCSCCEECC-CEEEEEES
T ss_pred             EEEEecccCcCCc-eeEEEEeecCCCCccEECC-CeEEEEEC
Confidence            4689999999996 9999998766555555554 88999875

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.56  E-value=0.0013  Score=38.84  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+|+.+..   +..|.|.+|+.+|. +.|.|+....-+++...-+ +.+|+|-
T Consensus        60 ~~~~~~~~~~~~~~L~I~~v~~~Ds-A~YyCA~~~~~~~~~~FG~-GT~LtVl  110 (114)
T d2rhea_          60 SDRFSASKSGTSASLAISGLESEDE-ADYYCAAWNDSLDEPGFGG-GTKLTVL  110 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEETTTTEEEECC-CEEEEEC
T ss_pred             CCcceecCCCCeeeeEecccCcccC-ceEEEeecCCCCCCCEECC-CeEEEEC
Confidence            34666643   46799999999996 9999999876666666555 8899996

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.54  E-value=0.00095  Score=38.53  Aligned_cols=46  Identities=22%  Similarity=0.321  Sum_probs=33.6

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..+|.+.-+|   .|.|.+++.||. +.|.|++.+  .++...-. +.+|+|+
T Consensus        61 ~~~fs~~~~~~~~~L~I~~l~~~Ds-a~YyCA~~~--~~~~~FG~-GT~LtVt  109 (109)
T d1bwwa_          61 PSRFSGSGSGTDYTFTISSLQPEDI-ATYYCQQYQ--SLPYTFGQ-GTKLQIT  109 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECS--SSSCEECC-CEEEEEC
T ss_pred             CCCEEeeCCCCEeEEEEeeceeCcC-ceEEEeecC--CCccEECC-CEEEEEC
Confidence            3456654443   599999999996 999999764  45555554 7888885

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.53  E-value=0.0016  Score=37.58  Aligned_cols=45  Identities=18%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             CeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .||.+..+   -.|.|.+++.||. +.|.|++..  ......-. +.+|+|+
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~--~~~~~FG~-GT~LtVk  106 (106)
T d1op3k1          59 SRFSGSGSGTEFTLTISGLQFDDF-ATYHCQHYA--GYSATFGQ-GTRVEIK  106 (106)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGC-SEEEEEEEC--SSCEEECC-CEEEEEC
T ss_pred             CceeeeccCCEEEEEEccccccCC-CcEeeeeCC--CCccEECC-CEEEEEC
Confidence            46655432   3499999999996 999999764  34444444 7788874

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.51  E-value=0.001  Score=37.79  Aligned_cols=38  Identities=18%  Similarity=0.359  Sum_probs=27.8

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .|.|.+++.+|. +.|.|++...-.+....-+ +.+|+|.
T Consensus        72 ~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~FG~-GT~L~V~  109 (110)
T d1u3ha1          72 SLHIADSQPGDS-ATYFCAASANSGTYQRFGT-GTKLQVV  109 (110)
T ss_dssp             EEEESSCCTTSC-SEEEECCEESSSCCCCCCS-CEEEEEE
T ss_pred             EeEeccCCCCCc-eeEeeeecCCCCCCCEECC-CeEEEEE
Confidence            599999999996 9999998754333333333 6788874

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.50  E-value=0.0017  Score=37.29  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCc-EEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGE-SQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge-~~~S~~~~~l~v~   57 (66)
                      .|.|.+++.+|. +.|.|++.....++ ...-+ +.+|+|.
T Consensus        75 ~L~I~~~~~~Ds-g~YyCa~~~~~~~~~l~FG~-GT~L~V~  113 (114)
T d2ak4d1          75 NFTITASQVVDS-AVYFCALSGFYNTDKLIFGT-GTRLQVF  113 (114)
T ss_dssp             EEEESSCCGGGC-EEEEEEEECSBTTSCCEECC-CEEEEEE
T ss_pred             EEeecccccccC-CCceEeCCCCCCCCcCEECC-CEEEEEE
Confidence            699999999996 99999987766544 34444 7888884

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.49  E-value=0.00031  Score=39.02  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .++.......|.|.+++.+|+ |.|+|++.|.+=
T Consensus        54 ~~~~~~~~~~l~i~~~~~~d~-G~Y~C~a~N~~G   86 (97)
T d1cs6a1          54 SRYRLVAGDLVISNPVKAKDA-GSYQCVATNARG   86 (97)
T ss_dssp             SSEEEETTEEEEESCCHHHHC-EEEEEEEEETTE
T ss_pred             ceEEeeeeeEEEEecccccCC-EEEEEEEEECCC
Confidence            344444445566677889995 999999999853

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.0014  Score=38.37  Aligned_cols=45  Identities=16%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +||.+.-   +..|.|.+++.||. +.|.|++.+  ++....-. +.||+|-
T Consensus        62 ~rf~~s~~~~~~~L~I~~~~~~Ds-a~YyCa~~~--~~~~~FG~-GT~LtVl  109 (110)
T d1oaql_          62 ARFSGSLIGNKAALTITGAQTEDE-AIYFCALWY--SNHLVFGG-GTKLTVL  109 (110)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGC-EEEEEEEEE--TTEEEECC-CEEEEEC
T ss_pred             eeeeecccccceeeecCCCCcccc-EeEEEEccc--CCCCEECC-CeEEEEC
Confidence            4555432   44699999999997 999999875  45665554 7788874

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.47  E-value=0.0026  Score=37.60  Aligned_cols=50  Identities=18%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             CCeEEEe--eccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVL--SSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~il--psGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+|+.+.  +++.   |.|.||+.+|. +.|.|+......+....=-.+.+|+|..
T Consensus        65 ~~r~~~s~~~~~~~~~L~I~~l~~~Ds-a~YyCA~~~~~~~~~~~FG~GT~LtV~p  119 (120)
T d1ypzf1          65 YKKMEASKNPSASTSILTIYSLEEEDE-AIYYCSYGEGSSGFHKVFAEGTKLIVIP  119 (120)
T ss_dssp             SSEEEEEECCTTTEEEEEECSCCGGGC-SEEEEEECCTTTCCCCEECSCEEEEEEC
T ss_pred             ccccccccccccccccccccccccccc-eeEEEEEcCCCCCcccEECCCeEEEEEC
Confidence            3577664  3443   99999999996 9999998765554322222377888863

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0018  Score=36.48  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=28.2

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ++.|.+|..+|+ |.|+|...++.. -..-|+ +..|.|+
T Consensus        63 ~F~l~~vt~~~~-G~Y~C~y~~~~~-~S~~Sd-pl~L~VT   99 (99)
T d1ucta1          63 EFVIDHMDANKA-GRYQCQYRIGHY-RFRYSD-TLELVVT   99 (99)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEETTT-EEEECC-CEEEEEE
T ss_pred             EEEecCCCHHHC-ceEEEEEECCCc-ccCCCC-CEEEEeC
Confidence            489999999996 999999987642 223354 7788875

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00021  Score=40.42  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccccc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYS   64 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~~   64 (66)
                      .|.|.+|+.+|.-+.|.|.+.|++-..   +. ..+|.|..+....|
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~---~~-~~~L~V~~~~~~~P  112 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFGSD---TE-IIRLKEQGSEMSGP  112 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEE---EE-EECCCCSCSSCCCC
T ss_pred             EEEEeccchhcCCeEEEEEEEECCCeE---EE-EEEEEEECCCCCCC
Confidence            599999999994388999999996522   22 45777776555554

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0018  Score=36.70  Aligned_cols=48  Identities=15%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR   60 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~   60 (66)
                      .+|+.+..+     ..|.|.||+.+|. +.|.|++...--+...    ..+|.|.|+.
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~l~~~Ds-G~Y~C~v~~~~~~~~~----~v~L~V~~~~  112 (116)
T d1xeda_          60 AGRANLTNFPENGTFVVNIAQLSQDDS-GRYKCGLGINSRGLSF----DVSLEVLEHH  112 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEESCGGGCCEE----EEEEEEECCC
T ss_pred             cCCccEeeeCCCCEEEEEEhhhCcCCC-EEEEEEEEcCCCCceE----eEEEEEECCC
Confidence            456655432     3699999999996 9999998755444332    3477777653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.39  E-value=0.0015  Score=37.87  Aligned_cols=46  Identities=20%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..||.+..   +..|.|.|++.||. +.|.|++...  .....-+ +.+|+|+
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Ds-A~YyCa~~~~--~~~~FG~-GT~LtVk  107 (107)
T d1mexl1          59 PDRFTGSGSGTDFTLTINNVQSEDL-AEYFCQQYNS--YPYTFGG-GTKLEIK  107 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CCCeeecCCCCeeeeeechhheecc-eeEEEeECCC--CCceECC-CEEEEEC
Confidence            34666543   35699999999996 9999997642  3344444 7788874

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.38  E-value=0.0015  Score=37.83  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..   +-.|.|.|++.||. +.|.|++.+.  +....-+ +.+|+|+
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GT~LtVk  107 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDV-ATYFCQQYWS--PPPTFGG-GTKLEIK  107 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGC-SEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             ccccceecCCCeEEeEEcccccccC-CcEEEeeccC--CCCeECC-CEEEEEC
Confidence            35666643   35699999999996 9999998753  3444444 7788874

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=37.45  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=28.3

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++.|.+|+.+|+ |.|+|...++.  .+-..+.+..|.|+|
T Consensus        58 ~F~i~~v~~~~~-G~Y~C~y~~~~--~~S~~Sd~leL~VTd   95 (95)
T d1olla1          58 KFYIPDMNSRMA-GQYSCIYRVGE--LWSEPSNLLDLVVTE   95 (95)
T ss_dssp             EEEESSCCGGGC-EEEEEEEEETT--EECCCCCCEEEEEES
T ss_pred             EEEEeeeecCCC-ceEEEEeCCCC--CccCCCCCEEEEEeC
Confidence            689999999996 99999987643  222223477888886

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0024  Score=36.65  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=33.0

Q ss_pred             CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++|.+..+   -.|.|.||+.||. +.|.|....  .+....=. +.+|+|+
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~--~~~~~FG~-GT~LtVk  106 (106)
T d1lk3l1          58 PARFSGSGSGTDFTLTIDPVEADDT-AIYFCQQSW--NGPLTFGA-GTKLELK  106 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECS--SSSCEECC-CEEEEEC
T ss_pred             CCceeeecCCCEEEeEECCcChhhC-CCccccccc--CccceECC-CeEEEEC
Confidence            456666554   3799999999996 999998653  34544444 7788774

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00065  Score=38.50  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      +.|.|.+++.+|. |.|+|.+.|.+= +...   ...|.|.+.
T Consensus        62 ~~L~i~~~~~~D~-G~Y~C~a~N~~G-~~~~---~~~v~V~~~   99 (103)
T d1wwbx_          62 GCLQLDNPTHMNN-GDYTLIAKNEYG-KDEK---QISAHFMGW   99 (103)
T ss_dssp             EEEEEESCCGGGC-EEEEEEEECSSC-EEEE---EEEECCSCC
T ss_pred             EEEEECCCCHHhC-ceEEEEEeccCC-EEEE---EEEEEEEeC
Confidence            3599999999996 999999999953 3222   335555543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.0028  Score=37.28  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=34.5

Q ss_pred             CCeEEEee--ccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS--SGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp--sGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .||+.+.-  +..   |.|.+++.||. +.|.|+..+.-.+-...-. +.+|.|+
T Consensus        58 ~gR~sis~d~~~~~~~lti~~L~~eDs-a~YyCa~~~~~~~~~~~~~-~~~L~Vs  110 (110)
T d1u9ka_          58 MGKFTLKHDPSEAMLQVQMTDLQVTDS-GLYRCVIYHPPNDPVVLFH-PVRLVVT  110 (110)
T ss_dssp             ETTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECTTSCCEECSC-CEEEEEC
T ss_pred             CcEEEEEEECCCCEEEEEECccccCCC-EEEEEEEeCCCCCCEEEEC-CEEEEEC
Confidence            46888853  222   89999999996 9999998777655544433 6677774

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.32  E-value=0.0026  Score=36.59  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcE-EecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~-~~S~~~~~l~v~e   58 (66)
                      .+||.+.-     +-.|.|.+++.+|. +.|.|.+..+-.+.. ..--.+.+|+|.+
T Consensus        58 ~~~~~~~~~~~~~~~sL~i~~~~~~Ds-g~Y~Ca~~~~~~~~~~~~FG~GT~L~V~p  113 (114)
T d2cdea1          58 NGRYTATLDADTKQSSLHITASQLSDS-ASYICVVSDRGSTLGRLYFGRGTQLTVWP  113 (114)
T ss_dssp             ETTEEECBCSSSSEEEEEECSCCGGGC-SEEEEEEECSCTTTCCEEECCCEEEEEEC
T ss_pred             cCccceeecCcccccccEEcccChhhC-cccceeeecCCCCcCEeEECCCCEEEEEC
Confidence            34555532     33499999999996 999999987544322 1222367899864

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.29  E-value=0.0034  Score=36.32  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEe
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~   57 (66)
                      .+||.+..+     -.|.|.+++.+|. +.|.|++..... ....-.. +.+|.|+
T Consensus        62 ~~rf~~~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~~~~~~~~~FG~-GT~L~V~  115 (116)
T d1tvda_          62 QGRFSVKHILTQKAFHLVISPVRTEDS-ATYYCAFTLPPPTDKLIFGK-GTRVTVE  115 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             ceEEEEEecCceeEEeeeecCcccccc-ccceeeEecCCCCceeEECc-CEEEEEE
Confidence            468877432     2589999999996 999999875433 3344454 7888884

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.25  E-value=0.0053  Score=36.29  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             cCCeEEEee--cc---cEEEeecCCCCCCcceeEEeecccc---CcEEecccceeEEEec
Q psy10521          7 VGGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITG   58 (66)
Q Consensus         7 ~~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~~lT---ge~~~S~~~~~l~v~e   58 (66)
                      ..+||.+.-  +.   .|.|.|++.+|. +.|.|.....-.   +....=-.+.+|+|+|
T Consensus        65 ~~~rf~~~~~~~~~~~~L~i~~l~~~Ds-a~YyCA~~~~~~~~~~~~~~FG~GT~LtV~d  123 (123)
T d1hxmb1          65 PSGKFEVDRIPETSTSTLTIHNVEKQDI-ATYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (123)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             ccceeEEeeeccccceeecccccccccC-cEEEEeeeCCCCCcCCccCEeCCCeEEEEEC
Confidence            357898853  33   499999999996 999999754322   2222222378999876

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=37.74  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+|+.++.     +..|.|+||+.+|. +.|.|++..
T Consensus        69 ~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~  104 (121)
T d2g5ra1          69 RDRFHLLGDPQTKNCTLSIRDARMSDA-GRYFFRMEK  104 (121)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEEE
T ss_pred             ceEEEEeeeCcCCEEEEEECCCChHHC-EEEEEEEEe
Confidence            46777753     34599999999996 999999863

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.21  E-value=0.0028  Score=36.27  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +-.|.|.+++.+|. +.|.|.+... +.....-+ +.+|+|..
T Consensus        71 ~~~L~I~~~~~~Ds-a~YyCa~~~~-~~~~~FG~-GT~LtV~p  110 (111)
T d1bd2d1          71 HLSLHIVPSQPGDS-AVYFCAAMEG-AQKLVFGQ-GTRLTINP  110 (111)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEESS-TTCEEECC-CEEEEEEC
T ss_pred             EEEEEECCCccccc-EEEEeeccCC-CCCcEeCC-CEEEEEEc
Confidence            44799999999996 9999998742 34444444 78999854

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.20  E-value=0.0027  Score=36.45  Aligned_cols=41  Identities=27%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v~e   58 (66)
                      +..|.|.+++.+|. +.|.|.+.....  .+...=+ +.+|+|.|
T Consensus        70 ~~~L~i~~~~~~Ds-a~YyCA~~~~~~~~~~~~FG~-GT~LtV~d  112 (112)
T d2cdeb1          70 HFPLTLESARPSHT-SQYLCASSENIGTAYEQYFGP-GTRLTVTE  112 (112)
T ss_dssp             BCCEEBSSCCTTTC-SEEEEEEECSSSSCCBCCCCC-CEEEEEES
T ss_pred             ceEeeecccccccc-ccEEEEEecCCCCcCeeEECC-CeEEEEcC
Confidence            45699999999996 999999876543  3333333 77898875

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.003  Score=35.85  Aligned_cols=26  Identities=19%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeecccc
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +..|.|+.+..+|+ +.|+|+|.|.+-
T Consensus        59 ~s~l~i~~~~~dd~-g~ytC~A~n~~g   84 (103)
T d1iama1          59 EVTTTVLVRRDHHG-AQFSCRTELDLR   84 (103)
T ss_dssp             EEEEEEECCSSCSS-CEEEEEEEEECG
T ss_pred             eEEEEEeeehhHCC-CEEEEEEEeCCC
Confidence            34688887777774 899999999864

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.06  E-value=0.0025  Score=36.66  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=29.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCc-EEecccceeEEEec
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGE-SQASVFQTRLSITG   58 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge-~~~S~~~~~l~v~e   58 (66)
                      -.|.|.+++.+|. +.|.|.+...-... ...=+ +.+|+|.|
T Consensus        73 ~~L~i~~~~~~Ds-a~YyCa~~~~~~~~~~~FG~-GT~L~V~d  113 (113)
T d1j8he1          73 FSLILESASTNQT-SMYLCASSSTGLPYGYTFGS-GTRLTVVE  113 (113)
T ss_dssp             CEEEESSCCGGGC-EEEEEEEECTTSSSCCEEBC-CEEEEEES
T ss_pred             eeeEeccCccCCc-ccEEeeEccCCCCCcCEECC-CEEEEEeC
Confidence            4699999999996 99999987654332 23333 78999875

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0059  Score=35.68  Aligned_cols=46  Identities=9%  Similarity=0.073  Sum_probs=33.2

Q ss_pred             CeEEEe-ecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~il-psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .++... ++|   .|.|.|++.+|. +.|.|++..  ......++ +.+|.+..
T Consensus        70 ~~~s~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~--~~~l~Fg~-Gt~v~~~~  119 (122)
T d1nezg_          70 KLFSAMRDTNNKYVLTLNKFSKENE-GYYFCSVIS--NSVMYFSS-VVPVLQKV  119 (122)
T ss_dssp             GTEEEEEETTTEEEEEESSCCGGGC-EEEEEEEEE--TTEEEECC-CEEEEECC
T ss_pred             cEEEEECCCCCEeEEEEcccccCCC-EEEEeeEeC--CCCcEECC-CeEEEEee
Confidence            456553 444   399999999996 999999753  44555666 77877754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.02  E-value=0.0039  Score=36.01  Aligned_cols=49  Identities=18%  Similarity=0.049  Sum_probs=33.6

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccc--cCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~l--Tge~~~S~~~~~l~v~e   58 (66)
                      .++|.+..     +-.|.|++++.+|. +.|.|.+...-  +++...= .+.+|.|.+
T Consensus        59 ~~~~~~~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~~~~~~~~~~FG-~GT~L~V~p  114 (115)
T d1lp9e1          59 HQGFHATLHKSSSSFHLQKSSAQLSDS-ALYYCALFLASSSFSKLVFG-QGTSLSVVP  114 (115)
T ss_dssp             CSSCEECCBGGGTBCCEEESSCCGGGC-EEEEEEEEECSSSSCEEEEC-CCEEEEEEC
T ss_pred             eeeeeeeccCCCCeEEeeccccccccC-ccceEEEEcCCCCcCeeEEC-CCEEEEEEc
Confidence            45666642     23499999999996 99999876542  2333333 378999864

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.01  E-value=0.0026  Score=37.04  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +++....   +..|.|.|++.+|. +.|.|++.+  ......=. +.+|.|+
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~Ds-a~YyCa~~~--~~~~~FG~-GT~LtVk  107 (107)
T d1c5cl1          60 KRFSGSRSGSDYSLTISSLESEDF-ADYYCLQYA--SFPRTFGG-GTKLEIK  107 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-SEEEEEECS--SSSCEECC-CEEEEEC
T ss_pred             CceEecccCCEEEEEEhhhcccCC-eEEEEecCc--CCcCeECC-CEEEEEC
Confidence            3444443   34799999999996 999998764  23333333 6777774

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.99  E-value=0.003  Score=36.08  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=32.5

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+++.+..   +..|.|.|++.||. +.|.|++..  ......=. +.+|+|+
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DS-a~YyCa~~~--~~~~~FG~-GT~L~Vk  107 (107)
T d1kcvl1          59 PDRFTGSGSATDFTLTISSVQADDD-ADYYCGQSY--SSPLTFGG-GTKLELK  107 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECS--SSSCEECC-CEEEEEE
T ss_pred             cceEEeeccCCeeecEEHhheecCC-ceEEEEecC--CCceeECC-CEEEEEC
Confidence            34555542   45699999999996 999999754  44555444 7788874

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.98  E-value=0.0032  Score=36.02  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +++....++   .|.|.|++.+|. +.|.|++.+.  .....-+ +.+|+|+
T Consensus        61 ~~~s~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GT~LtVk  108 (108)
T d2fx7l1          61 DRFSGSGSGTDFTLTISRLEPEDF-AVYYCQQYGQ--SLSTFGQ-GTKVEVK  108 (108)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             cceeeecCCCEEEEEehHheeccc-EEEeeecCCC--CCCEECC-CEEEEEC
Confidence            455554433   499999999996 9999998643  3334443 7788874

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.98  E-value=0.0044  Score=35.62  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccC--cEEecccceeEEEec
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITG--ESQASVFQTRLSITG   58 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTg--e~~~S~~~~~l~v~e   58 (66)
                      .|.|.+++.+|. +.|.|++...-.+  +...=+ +.+|+|.+
T Consensus        74 ~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~~FG~-GT~L~V~p  114 (115)
T d1j8hd1          74 HLTKPSAHMSDA-AEYFCAVSESPFGNEKLTFGT-GTRLTIIP  114 (115)
T ss_dssp             CEEESSCCGGGC-EEEEEEEESSTTSCSCEEECC-CEEEEEEC
T ss_pred             EEeeccccccCC-ccceeeecCCCCCCcccEECC-CEEEEEEe
Confidence            599999999996 9999999865433  333333 77998864

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.0053  Score=36.25  Aligned_cols=47  Identities=21%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF   59 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep   59 (66)
                      ..+|....++   .|.|.+|+.+|. +.|.|...+   .....-. +.+|+|+..
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Ds-avYyCa~~~---~~~~FG~-GT~LtV~~~  108 (119)
T d1f3rb2          59 PSRFSGSGSGTDYTLTISSLQPEDV-ATYFCYQYN---NGYTFGA-GTKLELKAA  108 (119)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGC-SEEEEEEES---SSEEECC-CCEECCSSS
T ss_pred             eeeecccCCCCEEEEEcccCccCCC-eEEEeeccC---CCCeECC-CeEEEEeCC
Confidence            3466666555   599999999996 999998753   3455444 889999643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.94  E-value=0.0041  Score=35.82  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      ..||...-+|   .|.|.||+.||. +.|.|+..+.  .+...=. +.||.|
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GT~LtV  106 (106)
T d1i8ka_          59 PSRFSSSGTGTDFVFTIENTLSEDV-GDYYCLQSFN--VPLTFGC-GTKLEI  106 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEC
T ss_pred             CcceeEeCCCCeeeecccCCccccC-EEEeEecCcc--ccCeECC-CEEEEC
Confidence            4466665444   399999999996 9999987642  3333322 455543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0074  Score=33.04  Aligned_cols=38  Identities=11%  Similarity=0.145  Sum_probs=28.0

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+.+.|..+..+|. +.|+|.+.|.. |. ..|. .+.|.|+
T Consensus        48 ~~~~~l~~~~~~d~-G~Y~C~A~N~~-G~-~~S~-~~~v~Vk   85 (85)
T d1rhfa2          48 PSPSVLNVTGVTQS-TMFSCEAHNLK-GL-ASSR-TATVHLQ   85 (85)
T ss_dssp             ESSEEEEECCCSSC-EEEEEEEEETT-EE-EECC-CEEEEEC
T ss_pred             CcceEEecCCcccc-EEEEEEEEcCC-Cc-EEEE-EEEEEEC
Confidence            46677888888885 99999999987 54 3344 5677663

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.90  E-value=0.0051  Score=35.11  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=27.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccC---cEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITG---ESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTg---e~~~S~~~~~l~v~   57 (66)
                      .|.|.+++.+|. +.|.|.+.....+   +...=+ +.+|+|.
T Consensus        74 ~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~-GT~L~V~  114 (115)
T d1fo0a_          74 GLIITATQIEDS-AVYFCAMRGDYGGSGNKLIFGT-GTLLSVK  114 (115)
T ss_dssp             EEEECSCCGGGC-EEEEEEEECCCTTCSSCEEECC-CEEEEEE
T ss_pred             EEEECCCCcccc-ccccceeecCCCCCcCeeEECC-CEEEEEE
Confidence            499999999996 9999998754332   223333 7788884

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.88  E-value=0.0052  Score=35.21  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +-.|.|.+++.+|. +.|.|++... +.+...-. +.+|.|+
T Consensus        71 ~~~L~i~~~~~~Ds-a~YyCA~~~~-~~~~~FG~-GT~L~V~  109 (110)
T d1ac6a_          71 SFHLQKASVQESDS-AVYYCALSGG-NNKLTFGA-GTKLTIK  109 (110)
T ss_dssp             BCCEEEEEECGGGC-EEEEEEEEET-TTEEEECC-CEEEEEE
T ss_pred             EEeeeecCcCcCCC-cccceeecCC-CCCcEECC-CeEEEEE
Confidence            45799999999996 9999998653 34554444 7889884

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.86  E-value=0.0025  Score=36.88  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .++....++   -|.|.|++.||. +.|.|+..+  .+....-+ +.+|+|+
T Consensus        64 ~~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~--~~~~~FG~-GT~L~Vk  111 (111)
T d1j05a_          64 VRFSGTGSRTDFTLIIDPVEADDV-ATYYCQQTN--EDPYTFGG-GTKLEIK  111 (111)
T ss_dssp             TTEEEECSSSEEEEEESSCCGGGC-EEEEEEECS--SSSCEECC-CEEEEC-
T ss_pred             CcEEEecCCCEEEEEEcccccccC-ccEEEeecC--CCccEECC-CeEEEEC
Confidence            355555444   599999999996 999998764  33444444 6777764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.86  E-value=0.0043  Score=35.58  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCc--EEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGE--SQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge--~~~S~~~~~l~v~   57 (66)
                      .|.|.|++.+|. +.|.|.+.....+.  ...=+ +.+|+|.
T Consensus        73 ~L~i~~~~~~Ds-g~YyCa~~~~~~~~~~~~FG~-GT~l~V~  112 (113)
T d2bnqd1          73 TLYIAASQPGDS-ATYLCAVRPTSGGSYIPTFGR-GTSLIVH  112 (113)
T ss_dssp             EEEESSCCGGGC-EEEEEEEEESSSSCCCCEECC-CEEEEEE
T ss_pred             EeeeecCCCCCC-cEEeEeEecCCCCcccceECC-CeEEEEE
Confidence            799999999996 99999998664332  22233 6788884

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.81  E-value=0.0059  Score=35.44  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      +..|.|.+++.+|. +.|.|.+... .+....=+ +.+|+|.+
T Consensus        70 ~~~L~I~~~~~~Ds-a~YyCa~~~~-~~~~~FG~-GT~LtV~~  109 (115)
T d1ogad1          70 DSSLHITAAQPGDT-GLYLCAGAGS-QGNLIFGK-GTKLSVKP  109 (115)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEECT-TSSEEECC-CEEEEEEC
T ss_pred             eeeeeecCCCccce-eeEcccccCC-CCCcEECC-CEEEEEec
Confidence            45799999999996 9999987643 23444444 88999985

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0017  Score=36.11  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.4

Q ss_pred             ccEEEeecCCCCCCc-ceeEEeeccc
Q psy10521         17 GDLYVFNATPNDGYK-SYRCRTVNKI   41 (66)
Q Consensus        17 GeL~I~nv~~~D~~~-~Y~C~~~~~l   41 (66)
                      ..|.|.+|+.+|. + .|.|.|.|.+
T Consensus        70 ~~L~I~~v~~~D~-g~~Y~C~A~N~~   94 (107)
T d1iray3          70 TVLNISEIESRFY-KHPFTCFAKNTH   94 (107)
T ss_dssp             EEEEESSCCGGGG-SSCEEEEEECSS
T ss_pred             EEEEEeecchHHC-CcEEEEEEEeCC
Confidence            4699999999995 6 5999999997

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.79  E-value=0.0044  Score=35.66  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..++....++   .|.|.+++.+|. +.|.|+..+-  .....-+ +.+|.|+
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~Ds-A~YyCa~~~~--~~~~FG~-GT~LtVk  107 (107)
T d1tjgl1          59 PSRFSGSGSGTEFTLTISTLRPEDF-ATYYCQQLHF--YPHTFGG-GTRVDVR  107 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSB--SSCEECC-CEEEEEC
T ss_pred             CcceEEeccCCEEEEEeccceeCcC-ceEEEEECcC--CcCeECC-CEEEEEC
Confidence            3466665444   499999999996 9999987643  2333333 7788774

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.77  E-value=0.004  Score=35.86  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +||....   +-.|.|.+++.+|. +.|.|+..+.  .....-. +.+|+|+
T Consensus        60 ~rf~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GTkLtVk  107 (107)
T d1d5il1          60 SRFSGSGSGQDYSLTISSLEYEDM-GIYYCLQYDE--FPYTFGS-GTKLEIK  107 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CceeecccCCEEEccccccCCcCC-EEEEeeeccC--CcceECC-CEEEEEC
Confidence            4565543   34699999999996 9999998754  2334444 7788874

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.76  E-value=0.0041  Score=35.67  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+||.+..   +..|.|.+++.+|. +.|.|+..+.  ++...-. +.+|.|+
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GT~LtVk  107 (107)
T d1j1pl_          59 PSRFSGSGSGTDFTLSINSVETEDF-GMYFCQQANS--WPYTFGG-GTKLEIK  107 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             CCcceecccCCEEEEEEcccCcCCC-EEEEEEcCCC--CccEECC-CeEEEEC
Confidence            35666654   44699999999996 9999987643  4444544 7788774

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.74  E-value=0.0029  Score=36.75  Aligned_cols=47  Identities=21%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      ++|....   +..|.|.+++.+|. +.|.|++..- +.....- .+.+|+|++
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DS-a~YyCA~~~~-~~~~~FG-~GT~LtVk~  109 (109)
T d1mqkl_          60 SRFSGSGSGTQFSLKINSLLPEDF-GSYYCQHHYG-TPPLTFG-GGTKLEIKR  109 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS-SSSCCBC-CCEEEEEC-
T ss_pred             CCEEEeccCCEEEEEEccccccCC-eeEEEeeeCC-CCCcEEC-CCEEEEEcC
Confidence            4555543   34599999999996 9999997642 2222233 377888863

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.72  E-value=0.0057  Score=35.04  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             ccEEEeecCCCCCCcceeEEeecc-ccCcEEecccceeEEEec
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNK-ITGESQASVFQTRLSITG   58 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~-lTge~~~S~~~~~l~v~e   58 (66)
                      -.|.|.+++.+|. +.|.|+.... -+++...-. +.+|+|-|
T Consensus        72 ~~L~I~~~~~~Ds-avYyCA~~~~~~~~~~~FG~-GT~LtVle  112 (112)
T d2bnub1          72 FPLRLLSAAPSQT-SVYFCASSYVGNTGELFFGE-GSRLTVLE  112 (112)
T ss_dssp             CCEEESSCCGGGC-EEEEEEEECSSTTCCCEECC-CEEEEEES
T ss_pred             EEEEECCCCHHHC-EEEEEeecCCCCCCccEECC-CEEEEEeC
Confidence            4799999999996 9999987532 334455554 78888865

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.71  E-value=0.0057  Score=34.97  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=26.6

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .|.|.|++.+|. +.|.|.+..  +++...-. +.+|+|
T Consensus        80 ~L~I~~~~~~Ds-g~Y~Ca~~~--~~~~~fG~-GT~L~V  114 (115)
T d2atpb1          80 FLSIMNVKPEDS-DFYFCATVG--SPKMVFGT-GTKLTV  114 (115)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEC--SSCEEECC-CEEEEE
T ss_pred             EEeecccCCCCC-cEEEEeEcC--CCCCEECc-CEEEEE
Confidence            599999999996 999999863  34555444 667766

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.67  E-value=0.0056  Score=35.03  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             CCeEEEeec----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilps----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+||.....    -.|.|.+++.+|. +.|.|.+... ..+...-. +.||+|.|
T Consensus        60 ~~~f~~~~~~~~~~~L~i~~~~~~Ds-a~YyCa~~~~-~~~~~FG~-GT~LtVld  111 (111)
T d2esve1          60 NNRFLAERTGGTYSTLKVQPAELEDS-GVYFCASSQD-RDTQYFGP-GTRLTVLE  111 (111)
T ss_dssp             STTEEEECTTSSSEEEEESSCCGGGC-EEEEEEEESS-SSSCEECC-CEEEEEES
T ss_pred             CccEEEEcCCCCEEEEEECCcccCCC-ceEEEeeeCC-CCccEECC-CeEEEEeC
Confidence            567776532    3699999999996 9999986532 23333333 78898875

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.64  E-value=0.0057  Score=34.94  Aligned_cols=37  Identities=30%  Similarity=0.355  Sum_probs=27.4

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      +..|.|.+++.+|. +.|.|.+.+.  ++...-. +.+|+|
T Consensus        73 ~~~L~I~~~~~~Ds-a~YyCa~~~~--~~~~FG~-GT~L~V  109 (110)
T d2aq2a1          73 QFSLILESATPSQT-SVYFCASGGG--GTLYFGA-GTRLSV  109 (110)
T ss_dssp             EEEEEESSCCGGGC-EEEEEEEEET--TEEEECC-CEEEEE
T ss_pred             EEEEEECCCCHhhC-EEEEEeeCCC--CCcEECC-CEEEEE
Confidence            45688999999996 9999998753  3344443 667776

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.61  E-value=0.0052  Score=35.60  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .||...-   +-.|.|.+++.||. +.|.|++.+-  .....=. +.||+|+
T Consensus        64 ~rfs~~~~~~~~~L~I~~~~~~Ds-A~YyCa~~~~--~~~~FG~-GT~LtVk  111 (111)
T d2gsia1          64 ARFSGSGSGTDFTLNIHPVEEEDA-ATYYCSHIRE--LPRSSGG-GTKLEIK  111 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSS--SSCEECC-CEEEEEE
T ss_pred             CcEEEecCCCchhcccccccccCC-ceEEEEECCC--CCCEECC-CEEEEEC
Confidence            4565543   34599999999996 9999987643  2333333 7788774

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.53  E-value=0.0054  Score=34.88  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .|.|.|++.+|. +.|.|+....   ....- .+.+|.|+
T Consensus        70 ~L~I~~~~~~Ds-a~YyCa~~~~---~~~FG-~GT~LtVk  104 (104)
T d1yqvl1          70 SLTISSMETEDA-ATYYCQQWGR---NPTFG-GGTKLEIK  104 (104)
T ss_dssp             EEEESSCCGGGC-EEEEEEECSS---SCEEC-CCEEEEEC
T ss_pred             EEEecccCcccC-CeEEEEecCC---CCeEC-CCeEEEEC
Confidence            499999999996 9999987532   23333 36788774

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.48  E-value=0.0054  Score=35.27  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             cEEEeecCCCCCCcceeEEeeccc-cCcEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~l-Tge~~~S~~~~~l~v~   57 (66)
                      .|.|.+++.+|. +.|.|.+...- ..+...-+ +.+|+|.
T Consensus        72 ~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~FG~-GT~L~V~  110 (113)
T d1h5ba_          72 TLHIRDAQLEDS-GTYFCAAEASSGSWQLIFGS-GTQLTVM  110 (113)
T ss_dssp             EEEECSCCGGGC-EEEEEEEECSSSSSSCEECC-CEEEEEE
T ss_pred             EEEECCCCHhHC-EEEEEEecCCCCCCeeEECc-CEEEEEE
Confidence            599999999996 99999986432 23444444 7889886

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.46  E-value=0.0077  Score=34.35  Aligned_cols=49  Identities=20%  Similarity=0.223  Sum_probs=32.7

Q ss_pred             CCeEEE-eecc---cEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEEec
Q psy10521          8 GGKYVV-LSSG---DLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~i-lpsG---eL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v~e   58 (66)
                      .+++.. .+++   .|.|.+++.+|. +.|.|.+...-.  .+...=. +.+|.|-|
T Consensus        59 ~~~~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCA~~~~~~~~~~~~FG~-GT~LtVld  113 (113)
T d2ntsp1          59 PGRFSGRQFSNSRSEMNVSTLELGDS-ALYLCASSLADRVNTEAFFGQ-GTRLTVVE  113 (113)
T ss_dssp             CTTEEEEECTTSCEEEEECSCCGGGC-EEEEEEEESSSCSSCCCEECC-CEEEEEES
T ss_pred             ccceeeccCcCCeeEEEECCCCcccc-eeeeeeeeCCCCCCcEeEECC-CeEEEEEC
Confidence            345544 3433   599999999996 999999875432  2333333 77888754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=95.40  E-value=0.0069  Score=35.01  Aligned_cols=46  Identities=15%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .+++....   +-.|.|.+++.+|. +.|.|...+   +....=. +.+|+|++
T Consensus        65 ~~~~s~~~s~~~~~L~I~~l~~~Ds-a~YyCA~~~---~~~~FG~-GT~LtV~~  113 (113)
T d1q9ra1          65 PDRFTGSGSGTDFTLTITSVQAEDL-AVYYCKQSY---NLRTFGG-GTKLEIKR  113 (113)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECS---SSCEECC-CEEEEEEC
T ss_pred             CccEEEeCCCCeEeEEecccccCCC-eEEEecccC---CCCEECC-CEEEEEeC
Confidence            34555544   24699999999996 999998753   2223333 77888863

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.39  E-value=0.0083  Score=34.59  Aligned_cols=24  Identities=17%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             cEEEeecCCCCCCcceeEEeecccc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .|.|.||+.+|. +.|.|.+.....
T Consensus        67 ~L~I~~l~~~Ds-a~YyCa~~~~~~   90 (113)
T d1vesa_          67 SLRISDLRVEDS-GTYKCQAFYSLP   90 (113)
T ss_dssp             EEEECSCCGGGC-EEEEEEEEEEEC
T ss_pred             eeeecccccCCc-ceEeeeeeccCC
Confidence            699999999996 999999875443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0056  Score=35.25  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=25.5

Q ss_pred             CCeEEEeecc---cEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+||.+..++   .|.|.+++.+|. +.|.|++..
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Ds-g~YyCa~~~   98 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENE-GYYFCSALS   98 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCC-EEEeEeEcC
Confidence            4678776655   499999999997 999999864

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0069  Score=34.80  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=26.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEe--cccceeEEE
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQA--SVFQTRLSI   56 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~--S~~~~~l~v   56 (66)
                      .|.|.|++.+|. +.|.|++..........  --.+.+|.|
T Consensus        78 ~L~I~~l~~~Ds-avYyCa~~~~~~~~~~~~~fG~GT~L~V  117 (118)
T d1yjdc1          78 TFYLQNLYVNQT-DIYFCKIEVMYPPPYLDNEKSNGTIIHV  117 (118)
T ss_dssp             EEEEESCCGGGC-EEEEEEEEEEESSSCEEBCCCCCEEEEC
T ss_pred             EEEECCCCcccC-eEEEEEEecccCCCcccccCCCCEEEEE
Confidence            599999999996 99999987655443322  112566665

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0053  Score=34.88  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+..|-+|+.+|+ |.|+|+..+. ...+-.-+.+-.|.|+
T Consensus        57 a~F~i~~v~~~~~-G~Y~C~y~~~-~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          57 GQFPIPSITWEHT-GRYRCYYGSD-TAGRSESSDPLELVVT   95 (96)
T ss_dssp             TEEEESSCCGGGC-EEEEEEEEET-TTEECCCCCCEEEEEE
T ss_pred             EEEEEEecCHHHC-CeEEEEEeCC-CCCccccCCCEEEEEe
Confidence            3688999999997 9999987643 2222222236677776

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.17  E-value=0.018  Score=33.28  Aligned_cols=47  Identities=26%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CCeEEEe-ec---ccEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEE
Q psy10521          8 GGKYVVL-SS---GDLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~il-ps---GeL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v   56 (66)
                      .+||.+. .+   ..|.|.+++.+|. +.|.|.+...-   ++....-+ +.+|+|
T Consensus        64 ~~~f~~~~~~~~~~~L~i~~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~-GT~LtV  117 (118)
T d2ij0c1          64 KDKFLINHASPTLSTLTVTSAHPEDS-GFYVCSALAGSGSSTDTQYFGP-GTQLTV  117 (118)
T ss_dssp             TTTEEEEECSSSEEEEEECSCCGGGC-EEEEEEEECSSCSSSCCCEECC-CEEEEE
T ss_pred             cccceeeccccccccccccccccccC-ceEEEEEecCCCCCCcccEeCc-CEEEEE
Confidence            5678775 33   3599999999996 99999986532   22333333 667766

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0097  Score=33.62  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=17.9

Q ss_pred             EEEeecCCCCCCcceeEEeecccc
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +++..+..+|..+.|.|+|.|.+-
T Consensus        64 ~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          64 TFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EEEEECCGGGGGCEEEEEEEEECG
T ss_pred             EEEEeeehhcCCcEEEEEEEecCC
Confidence            455566666666899999999863

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.14  E-value=0.0046  Score=35.59  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      -.|.|.+++.||. +.|.|+...  ..+...-+ +.+|.|
T Consensus        71 ~~L~I~~~~~~Ds-a~YyCa~~~--~~~~~FG~-GT~LtV  106 (107)
T d3cx5k1          71 YSLTISNLEPEDI-ATYFCQHHI--KFPWTFGA-GTKLEI  106 (107)
T ss_dssp             EEEECSCCCSCCC-SEEEEEECS--SSSCEECC-CCBCCB
T ss_pred             EEEEEeEeeecCC-CcEEeeeCC--CcccEECC-CEEEEE
Confidence            3699999999996 999998753  34444433 556655

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.93  E-value=0.012  Score=33.15  Aligned_cols=44  Identities=16%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI   56 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v   56 (66)
                      .++..-.   +-.|.|.+++.+|. +.|.|++.+-  .....-. +.+|+|
T Consensus        57 ~~~~~~~~~~~~~L~I~~l~~~Ds-a~YyCA~~~~--~~~~FG~-GT~LtV  103 (103)
T d8faba1          57 QRFSSSTSGTTVTLTISGVQAEDE-ADYYCQAWDN--SASIFGG-GTKLTV  103 (103)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGC-EEEEEEEEET--TEEEEBC-CEEEEE
T ss_pred             CcEEECCCCCccCceEcCcchhHC-ceEEeeecCC--CCCEeCC-CEEeEC
Confidence            3444433   35788999999996 9999987642  2222222 556665

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.008  Score=34.10  Aligned_cols=39  Identities=15%  Similarity=0.122  Sum_probs=27.0

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .+..|.+|..+|+ |.|+|.-.++- ..+-..+.+-.|.|+
T Consensus        54 a~F~i~~v~~~~~-G~Y~C~~~~~~-~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          54 AEFPLGPVTTAHR-GTYRCFGSYNN-HAWSFPSEPVKLLVT   92 (93)
T ss_dssp             EEEEEEECCGGGC-EEEEEECEEET-TEECCCCCCEEEEEE
T ss_pred             eEEEecccChhcC-ceEEEEeECCC-CCcCCCCCCEEEEee
Confidence            5788999999996 99999765431 223232347777776

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.70  E-value=0.013  Score=33.75  Aligned_cols=37  Identities=16%  Similarity=0.097  Sum_probs=25.8

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      -.|.|.+|+.||. +.|.|....  ......-. +.||.|+
T Consensus        76 ~~L~Is~~~~~Ds-AvYyCa~~~--~~~~~FG~-GTkL~vK  112 (112)
T d1mjul1          76 FTLRISRVEAEDV-GVYYCLQHL--EYPFTFGA-GTKLELK  112 (112)
T ss_dssp             EEEEESSCCGGGC-EEEEEEECS--SSSCEECC-CEEEEEC
T ss_pred             EEEEECCccccCC-ceEEEEeCC--CCCcEECC-CEEEEEC
Confidence            3599999999996 999997543  23333333 6677764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.46  E-value=0.016  Score=33.46  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      ..|.|.+|+.||. +.|.|...+..  ....=. +.||.|+
T Consensus        77 ~~L~I~~~~~~Ds-avYyCa~~~~~--~~~FG~-GTkLtVs  113 (113)
T d1n4xl_          77 FTLKISRVEAEDL-GIYYCFQGSHF--PPTFGG-GTKLEIA  113 (113)
T ss_dssp             EEEEESSCCGGGC-EEEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             ccCccCCCCcccC-EEEEEEECCCC--CCEECC-CEEEEEC
Confidence            3799999999996 99999765432  223333 6677763

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.32  E-value=0.019  Score=33.30  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=25.1

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      .|.|.+|+.||. +.|.|...+-.  ....-. +.||.|+
T Consensus        77 ~L~I~~~~~eDs-AvYYC~~~~~~--~~~FG~-GTkLtVk  112 (112)
T d1ncwl1          77 TLKISRVEAEDL-GVYYCWQGTHF--PYTFGG-GTKLEIK  112 (112)
T ss_dssp             EEEESSCCGGGC-EEEEEEECSSS--SCEECC-CEEEEEE
T ss_pred             EEEECccccCcC-EeEEEEcCCCc--ccEECC-CeEEEEC
Confidence            499999999997 99999764322  223332 6677764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.21  E-value=0.016  Score=33.61  Aligned_cols=32  Identities=41%  Similarity=0.692  Sum_probs=24.5

Q ss_pred             CCeEEEe-ecc----cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVL-SSG----DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~il-psG----eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +|||.+. +++    .|.|.|++.||. +.|.|++...
T Consensus        51 ~gr~~~~~~~~~~~~~L~I~~l~~~Ds-a~YyCA~~~~   87 (112)
T d1sq2n_          51 GGRYVETVNSGSKSFSLRINDLTVEDG-GTYRCGLGVA   87 (112)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECBT
T ss_pred             CCcEeeEEecCCceeeeEecCCcCccC-EEEeEEEecC
Confidence            5666653 333    599999999996 9999987654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.57  E-value=0.035  Score=31.48  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521         16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT   57 (66)
Q Consensus        16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~   57 (66)
                      +..|.|.+++.||. +.|.|+..+.  .+...=. +.+|+|-
T Consensus        73 ~~~L~i~~l~~~Ds-a~YyCA~~~~--~~~~FG~-GT~L~Vl  110 (111)
T d1cd0a_          73 SASLTISGLKTEDE-ADYYCQSYDA--RNVVFGG-GTRLTVL  110 (111)
T ss_dssp             EEEEEECSCCGGGC-EEEEEEEEET--TEEEEBC-CEEEEEC
T ss_pred             ccccccccCCcccC-cEEEEeeccC--CCCEECC-CeEEEEC
Confidence            45899999999996 9999986532  3333333 6677763

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.24  E-value=0.047  Score=31.68  Aligned_cols=47  Identities=15%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             CeEEEe--ec---ccEEEeecCCCCCCcceeEEeecccc-----CcEEecccceeEEEe
Q psy10521          9 GKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKIT-----GESQASVFQTRLSIT   57 (66)
Q Consensus         9 ~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~lT-----ge~~~S~~~~~l~v~   57 (66)
                      +||.+.  ++   -.|.|.+++.+|. +.|.|.....-.     .....-. +.+|+|.
T Consensus        62 ~r~~~s~~~~~~~~~L~i~~~~~~Ds-a~YyCA~~~~~~~~~~~~~~~FG~-GT~ltV~  118 (120)
T d1hxma1          62 DNFQGDIDIAKNLAVLKILAPSERDE-GSYYCACDTLGMGGEYTDKLIFGK-GTRVTVE  118 (120)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGC-EEEEEEEECCCCSSSCCCCCEEBC-CEEEEEE
T ss_pred             ccceeeccccccceecccccccccCC-ceeecCcccCCCCCcCccCCEECC-CcEEEEE
Confidence            466553  33   4799999999996 999998765432     2333333 6677775

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.027  Score=33.63  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      ...+.|.|+.+|.|.|.++..+|. ++|+-.++|.-
T Consensus        52 ~~~~~y~i~~nGtLkIK~L~~~d~-GtYkv~vYd~~   86 (101)
T d1hnfa1          52 KEKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSIYDTK   86 (101)
T ss_dssp             ESCTTEEECTTSCEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CCCceEEEccCCcEEeeeeeecCC-CcEEEEEEcCC
Confidence            346789999999999999999996 99999999873

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.86  E-value=0.015  Score=32.70  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+||.+..     +-.|.|.|++.+|. +.|.|++...
T Consensus        50 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCA~~~~   86 (96)
T d1ymmd1          50 SGRLRVTLDTSKKSSSLLITASRAADT-ASYFCATDTT   86 (96)
T ss_dssp             SSSCCBCCBGGGTBCCBCCSSCCSTTC-SCCEEEEEET
T ss_pred             cccceeeccCcceecccCcCCCCcccC-EEEeEeEecC
Confidence            45665532     23699999999996 9999997543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.86  E-value=0.031  Score=31.72  Aligned_cols=48  Identities=21%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CeEEEee---cccEEEeecCCCCCCcceeEEeecccc---CcEEecccceeEEEec
Q psy10521          9 GKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITG   58 (66)
Q Consensus         9 ~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lT---ge~~~S~~~~~l~v~e   58 (66)
                      +++.+..   +-.|.|.+++.+|. +.|.|.......   ++...-. +.+|+|..
T Consensus        58 ~~~~~~~~~~~~~L~i~~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~-GT~LtV~p  111 (112)
T d1kgcd1          58 ASLAIAEDRKSSTLILHRATLRDA-AVYYCILPLAGGTSYGKLTFGQ-GTILTVHP  111 (112)
T ss_dssp             EEEEECTTSSEEEEEESSCCGGGC-EEEEEECCCCSTTCCCCCCCCC-CEEEEEEC
T ss_pred             cceeecccCCeeEEEEeecccccc-eeEeeeEecCCCCccccCEeCC-CEEEEEEe
Confidence            3455543   33599999999996 999998764322   1222222 67888853

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.05  Score=30.65  Aligned_cols=40  Identities=15%  Similarity=0.061  Sum_probs=26.4

Q ss_pred             ccEEEeecCCCCCCcceeEEeeccccCcE-EecccceeEEEe
Q psy10521         17 GDLYVFNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSIT   57 (66)
Q Consensus        17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge~-~~S~~~~~l~v~   57 (66)
                      .+..|.+|..+|+ |.|+|+......-.. -.-+.+..|.|+
T Consensus        56 a~F~l~~v~~~~~-G~Y~C~y~~~~~p~~~S~~Sd~leL~VT   96 (96)
T d1ucta2          56 ANFSLGPVDLNVS-GIYRCYGWYNRSPYLWSFPSNALELVVT   96 (96)
T ss_dssp             EEEECCSCCGGGC-EEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred             cEEEEeccccccC-cEEEEEEEcCCCCCCccCCCCCEEEEEC
Confidence            4577889999996 999999876544222 122236666664

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=91.51  E-value=0.17  Score=28.38  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=20.2

Q ss_pred             cEEEeecCCCCCCcceeEEeecccc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +..|.+|..+|+ |.|+|.-.++..
T Consensus        58 ~F~l~~v~~~~~-G~Y~C~y~~~~~   81 (96)
T d1nkra1          58 NFSISRMTQDLA-GTYRCYGSVTHS   81 (96)
T ss_dssp             EEEESSCCGGGC-EEEEEEEEBTTB
T ss_pred             EEEEcccCcccC-eEEEEEEEcCCC
Confidence            589999999996 999998876643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.40  E-value=0.1  Score=31.20  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .||+-+.-  +.   -|.|.|++.||. +.|.|...
T Consensus        65 ~gR~tis~d~s~~~~~L~i~~L~~eDs-AvYYCA~~   99 (119)
T d1qnzh_          65 KGKAKLTVEKSSSTVYLEFSRLTSDDS-AVYYCAIH   99 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEEEEECGGGC-EEEEEEEC
T ss_pred             cccceeecccccceeeeeecccCccce-eEEEEEEe
Confidence            46887742  33   399999999996 99999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.01  E-value=0.35  Score=28.87  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+.|.-  +.   -|.|.+++.||. +.|.|...+.
T Consensus        65 kgRftiSrD~s~nt~~L~~~sL~~eDt-AvYYCAr~~~  101 (118)
T d2fbjh1          65 KDKFIISRDNAKNSLYLQMSKVRSEDT-ALYYCARLHY  101 (118)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGC-EEEEEEEEET
T ss_pred             eeeEEEeecCccceeeccccccCCCcc-eEEEeeEecC
Confidence            57888753  22   399999999996 9999986543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=88.91  E-value=0.17  Score=28.34  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=24.7

Q ss_pred             cEEEeecCCCCCCcceeEEeeccccC-cEEecccceeEEEe
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSIT   57 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lTg-e~~~S~~~~~l~v~   57 (66)
                      +..|.+|..+|+ |.|+|+-...-.- .+-..+.+-.|.|+
T Consensus        60 ~f~~~~~~~~~~-G~Y~C~y~~~~~p~~wS~~SdpLeL~VT   99 (99)
T d1nkra2          60 QADFPLGPATHG-GTYRCFGSFHDSPYEWSKSSDPLLVSVT   99 (99)
T ss_dssp             EEEEEEEECCSC-EEEEEEEEETTEEEEECCCCCCEEEEEC
T ss_pred             EEEEeccccccC-EEEEEEeecCCCCCCccCCCCCEEEEEC
Confidence            347888888886 9999987655331 22222336666664

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.78  E-value=0.15  Score=30.34  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .|||.+.-  +   --|.|.+++.||. +.|.|+..
T Consensus        66 ~gRft~s~d~s~~~~~L~i~~l~~eDs-AvYyCAr~  100 (120)
T d2agjh1          66 QSRLTITKDASKKQVVLTLTNLDPVDT-ATYYCART  100 (120)
T ss_dssp             CSSEEEECCTTTTEEEEEEESCCGGGC-EEEEEEEE
T ss_pred             ccccceecccccceeeeeEEeeeeccc-eEEeeEec
Confidence            57888852  3   3499999999996 99999743

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.55  E-value=0.11  Score=30.14  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=25.3

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +.+|.|.+  +-.|-|.--+|+|....|.|++.|.
T Consensus        65 ~~d~tys~--sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          65 LNDSRYSL--SSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             STTCCEEE--EEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             CCCCeEEE--EEEEEECHHHhCCCCCEEEEEEEEC
Confidence            34677776  5568887777777657899999996

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=88.50  E-value=0.22  Score=29.81  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=23.6

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .|||.+..  +.   -|.|.|++.||. +.|.|...
T Consensus        64 kgRftiS~D~s~nt~~L~i~~l~~eDt-A~YYCAr~   98 (120)
T d1dn0b1          64 KSRVTISVDTSKNQFSLKLSSVTAADT-AVYYCARP   98 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEC
T ss_pred             eeeeEEeccCchheecccccccccccc-cEEEEEee
Confidence            57888864  32   399999999996 99999644

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=88.42  E-value=0.27  Score=29.28  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+.+..  +   .-|.|.+++.||. +.|.|.....
T Consensus        64 kgR~tis~D~s~~~~~L~i~~L~~eDt-AvYyCAr~~~  100 (116)
T d7fabh1          64 RGRVTMLVNTSKNQFSLRLSSVTAADT-AVYYCARNLI  100 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECS
T ss_pred             eecceeecccchhhhhccccccccccc-eEEEeeeecC
Confidence            46887753  3   3499999999995 9999986443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.27  E-value=0.13  Score=30.82  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=24.2

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+-+.-  +   .-|.|.|++.||. +.|.|.....
T Consensus        65 kgR~tis~D~s~~t~~L~i~~L~~eDt-AvYYCAr~~~  101 (121)
T d1j05b_          65 QGKATITADTSSNTAYLQLTSLTSEDT-AVYYCAPFGY  101 (121)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEBT
T ss_pred             ccceEEEeecCCceeeecccccCcCcc-eEEEeEeecc
Confidence            46887742  2   3399999999996 9999986443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.97  E-value=0.41  Score=28.44  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .||+.+.-  +   --|.|.+++.||. ..|.|...
T Consensus        64 kgRftiS~D~s~~t~~L~m~sL~~eDt-AvYYCAr~   98 (117)
T d1um5h1          64 RGKATLTSDKSSNTAYLELSSLTSEDS-AVYYCARS   98 (117)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             eeeEEEEeccCceeEeecccccCCCcc-eEEEEeec
Confidence            57888743  2   2399999999995 99999753

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=87.93  E-value=0.24  Score=29.83  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=31.2

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG   58 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e   58 (66)
                      .||+-|.-     +.-|+|.|++.||. +.|.|....... ....=--+.+|.|+.
T Consensus        65 kgR~tis~D~s~nt~~L~i~~L~~eDt-AvYYCAr~~~~~-~~d~WG~GT~VTVsS  118 (123)
T d1mqkh_          65 KGRFTISRDNAKNTLYLQMSSLKSEDT-AMYYCVRHEYYY-AMDYWGQGTTVTVSS  118 (123)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEETTT-EEEEECCCEEEEECS
T ss_pred             cEEEEEEecCcccccccceeeeccCcc-cceeEEecCCCc-cccccCCCEEEEEeC
Confidence            46888853     13499999999995 999998654322 211111255677764

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.46  E-value=0.21  Score=29.87  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=23.9

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .||+.|..  +   .-|.|.+++.||. +.|.|....
T Consensus        65 kgRftiSrD~s~nt~yLqm~sL~~eDT-AvYYCAr~~  100 (119)
T d1rz7h1          65 RGRVTITADTSTDTGYLELSSLRSEDT-AVYYCAADP  100 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECT
T ss_pred             eeeEEEecccCceEEEeeeeccCcccc-eEEEEeecC
Confidence            46888753  2   3489999999995 999997653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.51  Score=26.15  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.1

Q ss_pred             cEEEeecCCCCCCcceeEEeecccc
Q psy10521         18 DLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus        18 eL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +..|.+|..+|+ |.|+|+-..+..
T Consensus        61 ~F~l~~v~~~~~-G~Y~C~y~~~~~   84 (98)
T d1ugna2          61 IFSVGPVSPSRR-WWYRCYAYDSNS   84 (98)
T ss_dssp             EEEECCCCTTSC-EEEEEEEECTTS
T ss_pred             EEEeeecccCCC-eEEEEeeEcCCC
Confidence            588999999997 999998876643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.12  E-value=0.21  Score=29.89  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+.+..  +.   -|.|.+++.||. +.|.|+..+.
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDt-AvYYCA~~~~  101 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDT-AVYYCAVPDP  101 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECSS
T ss_pred             eeeeeeecccccceEEEeecccCcCcc-eEEEEeEcCC
Confidence            57888863  22   399999999996 9999997654

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.75  E-value=0.53  Score=26.04  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CccCccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521          2 TSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES   45 (66)
Q Consensus         2 ~ps~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~   45 (66)
                      +|....+|.|.+.  --|-|.--+|+.  +.|.|++.|+-....
T Consensus        53 ~~~~~~~g~~s~~--S~L~v~~~~w~~--~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          53 VSAVLQSGLYTLS--SNTTVASGTWPS--ASVTCLVAHPKSSTA   92 (101)
T ss_dssp             CCCEEETTEEEEE--EEEEEETTTTTT--SCCEEEEEEGGGTEE
T ss_pred             eeeecCCCCEEEE--EEEEEchhhcCC--CeEEEEEEeCCCCee
Confidence            3445567788773  466666666643  579999999855443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.22  Score=27.67  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=19.9

Q ss_pred             EEeecCCCCCCcceeEEeeccccCc
Q psy10521         20 YVFNATPNDGYKSYRCRTVNKITGE   44 (66)
Q Consensus        20 ~I~nv~~~D~~~~Y~C~~~~~lTge   44 (66)
                      +...++++|..+.|+|++.|.+.+.
T Consensus        66 l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          66 VTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             EEccCChHHCCcEEEEEEEcCcCCc
Confidence            3446888888789999999998664

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=86.29  E-value=0.39  Score=26.79  Aligned_cols=47  Identities=19%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             CCeEEEe--ecccEEEeecCCCCCCcceeEEeeccccCc-EEecccceeEEE
Q psy10521          8 GGKYVVL--SSGDLYVFNATPNDGYKSYRCRTVNKITGE-SQASVFQTRLSI   56 (66)
Q Consensus         8 ~~ry~il--psGeL~I~nv~~~D~~~~Y~C~~~~~lTge-~~~S~~~~~l~v   56 (66)
                      .+||...  .+..|.|..++.+|. ++|.|.......+. ...-. +.+|+|
T Consensus        63 ~~~f~~~~~~~~~l~l~~~~~~ds-a~Y~Ca~~~~~~~~~~~FG~-GT~LtV  112 (112)
T d1fo0b_          63 GADYLATRVTDTELRLQVANMSQG-RTLYCTCSADRVGNTLYFGE-GSRLIV  112 (112)
T ss_dssp             TEEEEEEEEETTEEEEEEESCCSC-EEEEEEEESSSSSCCCEECC-CEEEEC
T ss_pred             ccccccccccccEEEEecCCccCC-ccEEEEEecCCCCCeeEeCC-CEEEEC
Confidence            3566653  356799999999996 89999976544443 23333 666664

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.14  E-value=0.21  Score=30.19  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .+|+.+..  +.   -|.|.+++.||. +.|.|+..
T Consensus        66 k~Rftis~d~s~~~~~L~i~~l~~eDt-AvYYCAr~  100 (132)
T d1tjgh1          66 NTRLTITKDTSKNQVVLVMTRVSPVDT-ATYFCAHR  100 (132)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             eecceecccccccEEEcccccCCcccc-eEEEEEEe
Confidence            57887753  22   299999999996 99999855

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=85.94  E-value=0.33  Score=29.02  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEe
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRT   37 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~   37 (66)
                      .||+.+.-  +   .-|.|.+++.||. +.|.|..
T Consensus        65 kgR~tiS~D~s~~t~~L~~~sL~~eDT-AvYYCAr   98 (118)
T d2jelh1          65 KGKATMTVDKSSSTAYMELARLTSEDS-AIYYCAR   98 (118)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             cccEEEecccCcceEeecccccccCcc-eeeeEEE
Confidence            36777753  1   3489999999996 9999953

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.82  E-value=0.6  Score=25.80  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521          5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI   41 (66)
Q Consensus         5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l   41 (66)
                      .+.+|.|.+  +-.|-|.--+|..+ ..|.|++.|.-
T Consensus        57 ~~~~gtys~--~S~L~v~~~~W~~~-~~ytC~V~H~s   90 (102)
T d2fbjh2          57 LASGGRYTM--SNQLTLPAVECPEG-ESVKCSVQHDS   90 (102)
T ss_dssp             ECSSSCEEE--EEEEEECGGGSCTT-CEEEEEEEETT
T ss_pred             ecCCCCEEE--EEEEEEeHHHccCC-CEEEEEEEECC
Confidence            345778876  44677777777653 78999999963

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=85.70  E-value=0.27  Score=29.32  Aligned_cols=31  Identities=19%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .||+.+.-+     --|.|.+++.||. ..|.|+...
T Consensus        63 kgR~tiS~D~s~~~~~L~i~~L~~eDt-A~YYCAr~~   98 (119)
T d1kxvc_          63 AGRFTISQGNAKNTAYLQMDSLKPDDT-AMYYCKPSL   98 (119)
T ss_dssp             BTTEEEEECSSTTEEEEEECSCCGGGC-EEEEEEEEE
T ss_pred             hcceEEecccCCcceecccccCCcCCc-ceEeeeecc
Confidence            468887532     2499999999996 999997654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=84.74  E-value=0.34  Score=28.94  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=25.5

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      .||+.+..+     --|.|.+++.||. +.|.|.......
T Consensus        65 kgR~tis~D~s~~~~~L~i~sL~~eDt-AvYYCAr~~~~~  103 (121)
T d1ol0a_          65 RGRFTISRDNSKNTLYLQMNSLRAEDT-AVYYCAREPRIP  103 (121)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCSTT
T ss_pred             eeeeEEeccccceeEEeeeeecccccc-eEEEEEEecCcC
Confidence            468888642     2499999999996 999997654333

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.13  E-value=0.18  Score=29.99  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=22.6

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEe
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRT   37 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~   37 (66)
                      .||+-+..  +   .-|.|.|++.||. +.|.|..
T Consensus        65 ~gRftis~D~s~~t~~L~i~~l~~eDt-AvYYCAr   98 (115)
T d1f3dh1          65 KGKATLTVDKSSSTAFMHLNSLTFEDS-AVYYCAN   98 (115)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             eEEEEEeeccCceeeEeeeeecCcCCc-EEEEEec
Confidence            46887753  2   3499999999996 9999975

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=83.95  E-value=0.92  Score=25.00  Aligned_cols=18  Identities=22%  Similarity=0.704  Sum_probs=14.5

Q ss_pred             eecCCCCCCcceeEEeecc
Q psy10521         22 FNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus        22 ~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .++.++++ ..|.|++.|.
T Consensus        69 l~~~~~~~-~~ytC~V~H~   86 (98)
T d1d5mb1          69 LETVPRSG-EVYTCQVEHP   86 (98)
T ss_dssp             EECCCCTT-CEEEEEEECT
T ss_pred             eeEcCCCC-CEEEEEEEEC
Confidence            45677775 7899999997

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.88  E-value=0.34  Score=28.09  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+|+.+.-+     --|.|.+++.||. +.|.|....
T Consensus        52 ~~R~tiS~D~s~~t~~L~~~sL~~eDT-AvYYCAr~~   87 (103)
T d1oari_          52 KSKATLTVDKPSSTAYMQLSSLTSEDS-AVYYCARMW   87 (103)
T ss_dssp             TTTEEEEC----CEEEEEECCC---CC-SEEEEEEEE
T ss_pred             eeceEEeccccccEEEeeeeecccccc-EEEEeEEEC
Confidence            468877532     3599999999995 999998643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=83.85  E-value=0.71  Score=25.46  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +.+|-|.+...     ..|.++++ ..|.|++.|.
T Consensus        56 ~~dgty~~~s~-----l~v~~~~~-~~ytC~V~H~   84 (97)
T d1uvqb1          56 NGDWTFQILVM-----LEMTPQRG-DVYTCHVEHP   84 (97)
T ss_dssp             CSSSCEEEEEE-----EECCSCTT-CCEEEEEECT
T ss_pred             CCCceEEEEEE-----eccCCCCC-CEEEEEEEeC
Confidence            34556666433     35567665 7899999997

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=83.20  E-value=0.59  Score=27.83  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=23.5

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .||+.|.-  +   .-|.|.++..||. +.|.|....
T Consensus        64 kgR~tiSrD~s~nt~~L~i~~l~~eDt-A~YyCAr~~   99 (118)
T d1lo4h1          64 KGRFTISRDIVRNILTLQMSRLRSEDT-AIYYCARGT   99 (118)
T ss_dssp             BTTBEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEE
T ss_pred             ceeEEEeccccceeeeeccccccCCcc-eEEEecccC
Confidence            45777743  2   3599999999995 999998643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=83.19  E-value=0.25  Score=29.01  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .||+.+.-  +.   -|.|.|++.||. +.|.|....
T Consensus        57 kgR~tiSrd~s~n~~~L~i~~l~~eDt-AvYyCA~~~   92 (107)
T d1sjva_          57 KGRFTISRDNAKKTVYLEMNSLEPEDT-AVYYCYTHY   92 (107)
T ss_dssp             TTCEEEEECTTTCCEEEEECSCCGGGC-SEEEEEECC
T ss_pred             ccceEEecCCceeEEEEeecCCCcccc-eeeeEeccC
Confidence            46888853  22   399999999996 999997643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=82.96  E-value=0.63  Score=27.66  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=22.8

Q ss_pred             CCeEEEee-----cccEEEeecCCCCCCcceeEEeec
Q psy10521          8 GGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVN   39 (66)
Q Consensus         8 ~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~   39 (66)
                      .+|+-+..     ..-|.|.+++.||. +.|.|....
T Consensus        65 ~gR~tis~D~s~~t~yL~i~~L~~eDt-AvYYCAr~~  100 (118)
T d1ct8b1          65 TDKARLTVDTSSSTAYMQFSSLTTEDS-AIYYCARYR  100 (118)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEC
T ss_pred             eeeEEEEecCccceEEecccccCCCcc-eEEEEeeec
Confidence            35666643     24588999999995 999997543

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=1  Score=24.36  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=19.2

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|.|.+..     ...+.++|. ..|.|++.|.
T Consensus        55 ~~~t~~~~s-----~l~~~~~~~-~~ytC~V~H~   82 (94)
T d1t7va1          55 GNGTYQSWV-----VVAVPPQDT-APYSCHVQHS   82 (94)
T ss_dssp             TTTEEEEEE-----EEEECTTCC-SCEEEEEEET
T ss_pred             CCCeEEEEE-----EeEeCCCCC-CEEEEEEEEC
Confidence            456666654     344566665 6899999997

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=82.26  E-value=0.23  Score=29.76  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=23.8

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .+||.+.-  +   .-|.|.+++.||. ..|.|+..
T Consensus        66 ~~Rftis~d~s~~t~~L~i~~l~~eDt-AvYyCAr~  100 (126)
T d1etzb1          66 KSRLTVSKDTSSNQVFLKITSVDTSDT-ATYHCARR  100 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             eEeeEEecccCCcEEEcceeccccccc-ceEEEEEe
Confidence            56888753  2   3499999999996 99999854

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.24  E-value=0.47  Score=28.28  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .||+.+.-  +   --|.|.|++.||. +.|.|...
T Consensus        65 kgRftiSrD~s~nt~~L~~~sL~~eDT-AvYYCAr~   99 (119)
T d1eapb1          65 KVKATLTADQSSSTAYMQLNSLTSEDS-AVYFCKRS   99 (119)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEC
T ss_pred             hcceEEEcccCcceEEeeeecccCCcc-eEEEEEEe
Confidence            46877742  2   3499999999995 99999753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.88  E-value=0.27  Score=29.33  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .||+-+.-  +.   .|.|.+++.||. +.|.|+..
T Consensus        65 kgR~tis~d~s~n~v~L~i~~l~~eDt-A~YYCAr~   99 (120)
T d1pg7x1          65 KDKATLTVDRSSTTAYIELVRLTSNDS-AVYYCARE   99 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             hhcceeeeccCcceEEccccccCCCcc-eEEEeeec
Confidence            46887743  22   499999999995 99999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=81.65  E-value=0.54  Score=28.01  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=23.8

Q ss_pred             CCeEEEee--c---ccEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--S---GDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--s---GeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+.+.-  +   --|.|.|++.||. ..|.|.....
T Consensus        65 kgR~TiS~D~s~nt~~L~~~sL~~eDT-AvYYCAr~~~  101 (119)
T d1ncwh1          65 KSRISITRDTSKNQFFLQLNSVTTEDT-ATYYCAGLLW  101 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEET
T ss_pred             cccceEecccccceeeccccccccCCc-eEEEEeEecc
Confidence            46777753  2   3499999999995 9999975443

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.43  E-value=1.1  Score=24.66  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=24.2

Q ss_pred             CccCccCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521          2 TSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT   42 (66)
Q Consensus         2 ~ps~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT   42 (66)
                      +|....+|.|.+  +--|-|..-+|. + +.|.|++.|.-.
T Consensus        53 ~~~~~~~g~ys~--~S~L~v~~~~w~-~-~~ytC~V~H~~~   89 (102)
T d1mjuh2          53 FPAVLQSDLYTL--SSSVTVTSSTWP-S-QSITCNVAHPAS   89 (102)
T ss_dssp             CCCEEETTEEEE--EEEEEECTTTTT-T-SCCEEEEEEGGG
T ss_pred             cccccCCCCEEE--EEEEEEehhHcC-C-ceEEEEEEECCC
Confidence            345556788877  345655555553 3 479999999643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.21  E-value=1.2  Score=24.40  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +.+|.|.+..     ...+.++++ ..|.|++.|.
T Consensus        57 ~~dgtf~~~s-----~l~v~~~~~-~~ytC~V~H~   85 (99)
T d1lk2b_          57 SKDWSFYILA-----HTEFTPTET-DTYACRVKHD   85 (99)
T ss_dssp             CTTCCEEEEE-----EEEECCCSS-CCEEEEEECT
T ss_pred             CCCCCEEEEE-----EeEecCcCC-CEEEEEEEeC
Confidence            3455565522     233456664 6899999996

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=81.18  E-value=1.1  Score=26.76  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=24.8

Q ss_pred             EEEeecCCCCCCcceeEEeeccccCcEEec---ccceeEEEec
Q psy10521         19 LYVFNATPNDGYKSYRCRTVNKITGESQAS---VFQTRLSITG   58 (66)
Q Consensus        19 L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S---~~~~~l~v~e   58 (66)
                      |.|.+++.||. +.|.|..........-.-   --+..|.|+.
T Consensus        81 L~l~~l~~eDt-AvYyCAr~~~~~~~~~~~d~WGqGT~VTVsS  122 (127)
T d3cx5j1          81 LKLNSVTTEDT-ATYYCARSEYYSVTGYAMDYWGQGTTVTVSS  122 (127)
T ss_dssp             EEECSCCGGGC-EEEEEEEEEEETTTEEEEEEECCCEEEEECS
T ss_pred             cceeccccccc-eEEEeeeecccCCCCCcccccCcCEEEEEEC
Confidence            99999999995 999998643333221111   1245666654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=81.02  E-value=0.27  Score=29.47  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEe
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRT   37 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~   37 (66)
                      .+|+-+.-  +.   -|.|.+++.||. ..|.|..
T Consensus        66 k~Rftis~D~s~~~~~L~i~sl~~eDs-AvYyCAr   99 (123)
T d1r0ah1          66 KSRLTVSKDTSNNQAFLNMMTVETADT-AIYYCAQ   99 (123)
T ss_dssp             GGGEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             eEEEEccccccceeEEcceeecccccc-eEEeecc
Confidence            36887743  22   399999999996 9999974

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=80.99  E-value=0.51  Score=28.22  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCeEEEee--cc---cEEEeecCCCCCCcceeEEeecc
Q psy10521          8 GGKYVVLS--SG---DLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         8 ~~ry~ilp--sG---eL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .||+.|..  +.   -|.|.+++.||. +.|.|...+.
T Consensus        67 kgRftiSrD~s~nt~~L~~~sL~~eDT-AvYYCar~~~  103 (122)
T d1q9rb1          67 KGRFTISRDNSQSILYLQMNTLRAEDS-ATYYCARDHD  103 (122)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECCC
T ss_pred             eecceeeeecccceeccceeeeccCcc-eEEEEEecCC
Confidence            36888853  22   389999999996 9999997544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=80.95  E-value=0.5  Score=28.32  Aligned_cols=30  Identities=17%  Similarity=0.288  Sum_probs=23.3

Q ss_pred             CCeEEEeec-----ccEEEeecCCCCCCcceeEEee
Q psy10521          8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTV   38 (66)
Q Consensus         8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~   38 (66)
                      .||+.+.-+     --|.|.|++.||. +.|.|...
T Consensus        66 kgR~tiS~D~s~ntvyL~~~~L~~eDt-A~YYCAr~  100 (122)
T d1vgeh1          66 RGRVTFTRDTSATTAYMGLSSLRPEDT-AVYYCARD  100 (122)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             eEeeEEeccCCcceeeecccccCCCcc-eEEEEeec
Confidence            478877531     2389999999996 99999764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.44  Score=26.33  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             ccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      +.+|.|.+  +..|-|.--+|+. ...|.|++.|.
T Consensus        60 ~~dgtys~--~S~L~v~~~~w~~-~~~ytC~V~H~   91 (102)
T d1q0xl2          60 QSNNKYMA--SSYLTLTARAWER-HSSYSCQVTHE   91 (102)
T ss_dssp             CTTSCEEE--EEEEEEEHHHHTT-CCEEEEEEEET
T ss_pred             cCCCCEEE--EEEEEECHHHhCC-CCEEEEEEEEC
Confidence            45667766  4456666555555 37999999996

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=0.2  Score=27.96  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=21.1

Q ss_pred             cCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521          7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK   40 (66)
Q Consensus         7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~   40 (66)
                      .+|.|.+  +..|-|.--+|+.+ ..|.|++.|+
T Consensus        61 ~~~~y~~--~S~L~v~~~~w~~~-~~ytC~V~H~   91 (104)
T d1o0va1          61 EGELAST--QSELTLSQKHWLSD-RTYTCQVTYQ   91 (104)
T ss_dssp             ETTEEEE--EEEEEEEHHHHHTT-CCEEEEEEET
T ss_pred             CCCeEEE--EEEEEECHHHcCCC-CEEEEEEEEC
Confidence            4555655  44566666565553 7899999997