Psyllid ID: psy10530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
MNAATRSSGTEVKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRAA
cccccccccccccccccccccccHHHHHHHHccccccHHHHHccccccHHHHHHHcccEEEEEEcccEEEEEcccccccccEEEEEEcEEEEEEEEcEEEEEEccEEEEcccccccEEEEEEEccHHHHHHHHHHHHcccc
cccccccccccccEEEcccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHcccccccEccccEEEEEEccccccEEEEEEEEEEEEEEEEEEEEEEEcccccEEEcccccccEEEEEEcccHHHHHHHHHHHccccc
mnaatrssgtEVKMKLNKLVTSsrrknrkrhfnapshIRRRIMSAPLSKELRQKYnvrsmpvrkddevqvvrghykgqqvGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRAA
mnaatrssgtevkmklnklvtssrrknrkrhfnapshirrrimsaplskelrqkynvrsmpvrkddevqvvrghykgqqvgkvvqsYRKKFVIYIEKIqrdkvngatvyvgihpskcvivklkmdkdrKKIIerrakgraa
MNAATRSSGTEVKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRAA
*******************************************************************VQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKM*****************
*******************************FNAPSHIRRRIMSAP***ELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKII**RA*****
***********VKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE********
************K*KL***VTS***KN*****N*PSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNAATRSSGTEVKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query141 2.2.26 [Sep-21-2011]
P61255145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.809 2e-56
P61256145 60S ribosomal protein L26 N/A N/A 0.893 0.868 0.809 2e-56
P61254145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.809 2e-56
P61257145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.809 2e-56
Q95WA0144 60S ribosomal protein L26 N/A N/A 0.900 0.881 0.795 3e-56
Q9UNX3145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.801 4e-56
P12749145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.801 2e-55
Q2I0I6145 60S ribosomal protein L26 yes N/A 0.893 0.868 0.785 4e-54
P47832128 60S ribosomal protein L26 no N/A 0.773 0.851 0.825 8e-50
P51414146 60S ribosomal protein L26 yes N/A 0.900 0.869 0.718 3e-46
>sp|P61255|RL26_MOUSE 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1 Back     alignment and function desciption
 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 115/126 (91%)

Query: 14  MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
           MK N  VTS R KNRKRHFNAPSHIRR+IMS+PLSKELRQKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 74  HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
           HYKGQQ+GKVVQ YRKK+VIYIE++QR+K NG TV+VGIHPSK VI +LK+DKDRKKI+E
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 134 RRAKGR 139
           R+AK R
Sbjct: 121 RKAKSR 126

Mus musculus (taxid: 10090)
>sp|P61256|RL26_MACFA 60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1 Back     alignment and function description
>sp|P61257|RL26_BOVIN 60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|Q95WA0|RL26_LITLI 60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|Q9UNX3|RL26L_HUMAN 60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1 Back     alignment and function description
>sp|P12749|RL26_RAT 60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1 Back     alignment and function description
>sp|Q2I0I6|RL26_AILME 60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|P47832|RL26_CHICK 60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
110671412153 putative ribosomal protein L26e [Diaphor 0.907 0.836 1.0 1e-67
70909791148 ribosomal protein L26e [Cicindela litore 0.907 0.864 0.875 3e-60
91093619150 PREDICTED: similar to ribosomal protein 0.907 0.853 0.882 3e-60
242010273147 60S ribosomal protein L26, putative [Ped 0.907 0.870 0.890 4e-60
70909795151 ribosomal protein L26e [Eucinetus sp. AP 0.893 0.834 0.880 1e-59
156547842148 PREDICTED: 60S ribosomal protein L26-lik 0.907 0.864 0.875 4e-59
62083429149 ribosomal protein L26 [Lysiphlebus testa 0.907 0.859 0.867 5e-59
70909799150 ribosomal protein L26e [Platystomos albi 0.907 0.853 0.875 5e-59
70909793149 ribosomal protein L26e [Curculio glandiu 0.907 0.859 0.875 6e-59
149689146149 60S ribosomal protein L26 [Triatoma infe 0.900 0.852 0.874 6e-59
>gi|110671412|gb|ABG81957.1| putative ribosomal protein L26e [Diaphorina citri] Back     alignment and taxonomy information
 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 14  MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
           MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG
Sbjct: 1   MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 60

Query: 74  HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
           HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE
Sbjct: 61  HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 120

Query: 134 RRAKGRAA 141
           RRAKGRAA
Sbjct: 121 RRAKGRAA 128

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|70909791|emb|CAJ17321.1| ribosomal protein L26e [Cicindela litorea] Back     alignment and taxonomy information
>gi|91093619|ref|XP_972048.1| PREDICTED: similar to ribosomal protein L26e [Tribolium castaneum] gi|270015756|gb|EFA12204.1| hypothetical protein TcasGA2_TC005120 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242010273|ref|XP_002425893.1| 60S ribosomal protein L26, putative [Pediculus humanus corporis] gi|212509869|gb|EEB13155.1| 60S ribosomal protein L26, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|70909795|emb|CAJ17323.1| ribosomal protein L26e [Eucinetus sp. APV-2005] Back     alignment and taxonomy information
>gi|156547842|ref|XP_001603723.1| PREDICTED: 60S ribosomal protein L26-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|62083429|gb|AAX62439.1| ribosomal protein L26 [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|70909799|emb|CAJ17386.1| ribosomal protein L26e [Platystomos albinus] Back     alignment and taxonomy information
>gi|70909793|emb|CAJ17322.1| ribosomal protein L26e [Curculio glandium] Back     alignment and taxonomy information
>gi|149689146|gb|ABR27925.1| 60S ribosomal protein L26 [Triatoma infestans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
ZFIN|ZDB-GENE-040426-2117145 rpl26 "ribosomal protein L26" 0.893 0.868 0.833 2.1e-54
UNIPROTKB|F1NNZ2166 RPL26L1 "Uncharacterized prote 0.900 0.765 0.811 1.9e-53
UNIPROTKB|F2Z4K6145 RPL26L1 "Uncharacterized prote 0.893 0.868 0.809 6.3e-53
UNIPROTKB|P61257145 RPL26 "60S ribosomal protein L 0.893 0.868 0.809 6.3e-53
UNIPROTKB|E2QUE7145 RPL26 "Uncharacterized protein 0.893 0.868 0.809 6.3e-53
UNIPROTKB|P61254145 RPL26 "60S ribosomal protein L 0.893 0.868 0.809 6.3e-53
UNIPROTKB|I3L7Y1145 RPL26 "Uncharacterized protein 0.893 0.868 0.809 6.3e-53
FB|FBgn0036825149 RpL26 "Ribosomal protein L26" 0.907 0.859 0.796 8e-53
UNIPROTKB|E5RIT6128 RPL26L1 "60S ribosomal protein 0.893 0.984 0.801 8e-53
UNIPROTKB|Q9UNX3145 RPL26L1 "60S ribosomal protein 0.893 0.868 0.801 8e-53
ZFIN|ZDB-GENE-040426-2117 rpl26 "ribosomal protein L26" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 105/126 (83%), Positives = 118/126 (93%)

Query:    14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
             MKLN  VTSSRRKNRKRHFNAPSHIRR+IMS+PLSKELRQKYNVRSMP+RKDDEVQVVRG
Sbjct:     1 MKLNTFVTSSRRKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query:    74 HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
             HYKGQQ+GKVVQ YRKK+VIYIE++QR+K NG TV+VGIHPSK VI +LK+DKDRKKI+E
Sbjct:    61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query:   134 RRAKGR 139
             R+AK R
Sbjct:   121 RKAKSR 126
GO:0005622 "intracellular" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0015934 "large ribosomal subunit" evidence=IEA
UNIPROTKB|F1NNZ2 RPL26L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K6 RPL26L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P61257 RPL26 "60S ribosomal protein L26" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUE7 RPL26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61254 RPL26 "60S ribosomal protein L26" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7Y1 RPL26 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0036825 RpL26 "Ribosomal protein L26" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E5RIT6 RPL26L1 "60S ribosomal protein L26-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNX3 RPL26L1 "60S ribosomal protein L26-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8ACD3RL24_IGNH4No assigned EC number0.48670.78720.888yesN/A
Q8TW19RL24_METKANo assigned EC number0.46950.80140.7583yesN/A
P14034RL24_METVANo assigned EC number0.39130.78720.9327yesN/A
B1L777RL24_KORCONo assigned EC number0.49100.78010.8396yesN/A
Q9UNX3RL26L_HUMANNo assigned EC number0.80150.89360.8689yesN/A
P47832RL26_CHICKNo assigned EC number0.82560.77300.8515noN/A
Q46GA6RL24_METBFNo assigned EC number0.37830.78010.9482yesN/A
Q54QM8RL26_DICDINo assigned EC number0.56250.90070.9136yesN/A
Q6LXE2RL24_METMPNo assigned EC number0.41500.73040.8655yesN/A
Q975J1RL24_SULTONo assigned EC number0.42270.85810.8832yesN/A
A6UWU9RL24_META3No assigned EC number0.41960.78010.9243yesN/A
P61256RL26_MACFANo assigned EC number0.80950.89360.8689N/AN/A
P61257RL26_BOVINNo assigned EC number0.80950.89360.8689yesN/A
P61254RL26_HUMANNo assigned EC number0.80950.89360.8689yesN/A
P61255RL26_MOUSENo assigned EC number0.80950.89360.8689yesN/A
Q23F79RL26_TETTSNo assigned EC number0.56090.86520.9037N/AN/A
P51414RL261_ARATHNo assigned EC number0.71870.90070.8698yesN/A
A5UL77RL24_METS3No assigned EC number0.43950.63820.7692yesN/A
P54038RL24_METJANo assigned EC number0.45790.74460.875yesN/A
A3MWZ8RL24_PYRCJNo assigned EC number0.43330.83680.9218yesN/A
A4WLL3RL24_PYRARNo assigned EC number0.48760.83680.9672yesN/A
A0B9V9RL24_METTPNo assigned EC number0.42730.81560.9913yesN/A
Q2I0I6RL26_AILMENo assigned EC number0.78570.89360.8689yesN/A
Q9V1U7RL24_PYRABNo assigned EC number0.49190.84390.9834yesN/A
O05633RL24_SULACNo assigned EC number0.38520.85100.8955yesN/A
Q5JJF9RL24_PYRKONo assigned EC number0.49160.83680.9752yesN/A
A3DNB8RL24_STAMFNo assigned EC number0.50.80850.75yesN/A
A8MB21RL24_CALMQNo assigned EC number0.4320.86520.8531yesN/A
A2BMD0RL24_HYPBUNo assigned EC number0.44160.83680.7919yesN/A
Q2NFW8RL24_METSTNo assigned EC number0.38090.73750.8888yesN/A
P05743RL26A_YEASTNo assigned EC number0.54700.82260.9133yesN/A
Q19869RL26_CAEELNo assigned EC number0.61410.89360.8873yesN/A
Q8ZTD4RL24_PYRAENo assigned EC number0.47360.79430.9105yesN/A
P53221RL26B_YEASTNo assigned EC number0.54700.82260.9133yesN/A
P78946RL26_SCHPONo assigned EC number0.57720.86520.9682yesN/A
A1RS05RL24_PYRILNo assigned EC number0.43850.79430.9105yesN/A
Q9UX95RL24_SULSONo assigned EC number0.3750.78720.9327yesN/A
A6VGZ6RL24_METM7No assigned EC number0.41500.73040.8655yesN/A
Q8U010RL24_PYRFUNo assigned EC number0.50830.83680.9752yesN/A
O59429RL24_PYRHONo assigned EC number0.51610.84390.9834yesN/A
O26122RL24_METTHNo assigned EC number0.45130.78720.9487yesN/A
Q9FJX2RL262_ARATHNo assigned EC number0.65620.90070.8698noN/A
Q39411RL26_BRARANo assigned EC number0.65620.90070.8698N/AN/A
A1RWS4RL24_THEPDNo assigned EC number0.44060.80850.8702yesN/A
Q9YF83RL24_AERPENo assigned EC number0.47450.80850.8636yesN/A
P12749RL26_RATNo assigned EC number0.80150.89360.8689yesN/A
A6UQ55RL24_METVSNo assigned EC number0.39130.78720.9327yesN/A
A4FWB0RL24_METM5No assigned EC number0.41500.73040.8655yesN/A
Q95WA0RL26_LITLINo assigned EC number0.79520.90070.8819N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
PTZ00194143 PTZ00194, PTZ00194, 60S ribosomal protein L26; Pro 2e-53
TIGR01080114 TIGR01080, rplX_A_E, ribosomal protein L24p/L26e, 1e-40
PRK01191120 PRK01191, rpl24p, 50S ribosomal protein L24P; Vali 2e-34
cd0608965 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein 1e-09
COG0198104 COG0198, RplX, Ribosomal protein L24 [Translation, 1e-05
>gnl|CDD|185508 PTZ00194, PTZ00194, 60S ribosomal protein L26; Provisional Back     alignment and domain information 
 Score =  164 bits (418), Expect = 2e-53
 Identities = 84/122 (68%), Positives = 102/122 (83%), Gaps = 1/122 (0%)

Query: 16  LNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHY 75
            N +V+SSRRK RK HF APSH+RR++MSAPLSKELR KYNVRSMPVRKDDEV VVRGH+
Sbjct: 1   FNSIVSSSRRKARKAHFTAPSHLRRKLMSAPLSKELRAKYNVRSMPVRKDDEVMVVRGHH 60

Query: 76  KGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERR 135
           KG++ GKV   YRKK+VI+IEKI R+K NG  V +GIHPS  +I KLK++KDRK I+ER+
Sbjct: 61  KGRE-GKVTAVYRKKWVIHIEKITREKANGEPVQIGIHPSNVIITKLKLNKDRKAILERK 119

Query: 136 AK 137
           A+
Sbjct: 120 AR 121

Length = 143
>gnl|CDD|130152 TIGR01080, rplX_A_E, ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>gnl|CDD|234915 PRK01191, rpl24p, 50S ribosomal protein L24P; Validated Back     alignment and domain information
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26 Back     alignment and domain information
>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 141
PTZ00194143 60S ribosomal protein L26; Provisional 100.0
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 100.0
KOG3401|consensus145 100.0
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 100.0
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 99.86
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 99.84
CHL0014183 rpl24 ribosomal protein L24; Validated 99.84
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 99.82
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 99.81
KOG1708|consensus236 99.42
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 98.75
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 97.69
PRK08559153 nusG transcription antitermination protein NusG; V 97.62
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 97.55
PRK05609181 nusG transcription antitermination protein NusG; V 96.98
TIGR00922172 nusG transcription termination/antitermination fac 96.97
COG0250178 NusG Transcription antiterminator [Transcription] 96.89
TIGR01955159 RfaH transcriptional activator RfaH. This model re 96.22
TIGR01956258 NusG_myco NusG family protein. This model represen 96.16
PRK09014162 rfaH transcriptional activator RfaH; Provisional 96.07
KOG1999|consensus 1024 92.52
COG5164 607 SPT5 Transcription elongation factor [Transcriptio 90.59
KOG3401|consensus145 88.66
PRK0433384 50S ribosomal protein L14e; Validated 88.36
PTZ00471134 60S ribosomal protein L27; Provisional 81.23
COG200289 AbrB Regulators of stationary/sporulation gene exp 80.54
TIGR01024113 rplS_bact ribosomal protein L19, bacterial type. T 80.39
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.8e-53  Score=324.04  Aligned_cols=124  Identities=68%  Similarity=1.052  Sum_probs=120.6

Q ss_pred             ecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEE
Q psy10530         16 LNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYI   95 (141)
Q Consensus        16 ~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~V   95 (141)
                      +||+||+|||||||++||||+|.|+++|+||||+|||++||+|+++|++||+|+||+|+|||++ |+|++|++++++|+|
T Consensus         1 ~n~~~S~~prKqRKa~~~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~IkkGD~V~Vi~Gk~KGk~-GkV~~V~~k~~~ViV   79 (143)
T PTZ00194          1 FNSIVSSSRRKARKAHFTAPSHLRRKLMSAPLSKELRAKYNVRSMPVRKDDEVMVVRGHHKGRE-GKVTAVYRKKWVIHI   79 (143)
T ss_pred             CCccccCCchHHHHHhhcCcHHHHHHHhcCccCHHHHHHhCCccceeecCCEEEEecCCCCCCc-eEEEEEEcCCCEEEE
Confidence            5899999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             eeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhccc
Q psy10530         96 EKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRA  140 (141)
Q Consensus        96 Egvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~~  140 (141)
                      ||||+.|.+|.++|+|||||||+||||++|++|.++||+++.+++
T Consensus        80 Egvn~~Kk~gk~~e~PIh~SNV~iv~l~l~~~R~~~l~~k~~~~~  124 (143)
T PTZ00194         80 EKITREKANGEPVQIGIHPSNVIITKLKLNKDRKAILERKARSTK  124 (143)
T ss_pred             eCeEEEecCCCEeecCcCchheEEEccccCchHHHHHhhhhhhhh
Confidence            999999999999999999999999999999999999999876653

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>KOG3401|consensus Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>KOG1708|consensus Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>KOG1999|consensus Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>KOG3401|consensus Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>PTZ00471 60S ribosomal protein L27; Provisional Back     alignment and domain information
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription] Back     alignment and domain information
>TIGR01024 rplS_bact ribosomal protein L19, bacterial type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
2zkr_t145 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-57
3izr_Y150 Localization Of The Large Subunit Ribosomal Protein 4e-46
4a17_S135 T.Thermophila 60s Ribosomal Subunit In Complex With 5e-35
3zf7_Z143 High-resolution Cryo-electron Microscopy Structure 5e-34
2ww9_L127 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 2e-33
1s1i_U126 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-33
3izs_Y123 Localization Of The Large Subunit Ribosomal Protein 3e-33
3jyw_U116 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-32
3j21_U121 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-27
1s72_T120 Refined Crystal Structure Of The Haloarcula Marismo 3e-09
1ffk_Q119 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-09
>pdb|2ZKR|TT Chain t, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 115/126 (91%)
Query: 14  MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
           MK N  VTS R KNRKRHFNAPSHIRR+IMS+PLSKELRQKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 74  HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
           HYKGQQ+GKVVQ YRKK+VIYIE++QR+K NG TV+VGIHPSK VI +LK+DKDRKKI+E
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 134 RRAKGR 139
           R+AK R
Sbjct: 121 RKAKSR 126
>pdb|3IZR|Y Chain Y, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 150 Back     alignment and structure
>pdb|4A17|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 135 Back     alignment and structure
>pdb|3ZF7|Z Chain Z, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143 Back     alignment and structure
>pdb|2WW9|L Chain L, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 127 Back     alignment and structure
>pdb|1S1I|U Chain U, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 126 Back     alignment and structure
>pdb|3IZS|Y Chain Y, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 123 Back     alignment and structure
>pdb|3JYW|U Chain U, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 116 Back     alignment and structure
>pdb|3J21|U Chain U, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 121 Back     alignment and structure
>pdb|1S72|T Chain T, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 120 Back     alignment and structure
>pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 119 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 2e-48
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 7e-43
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 2e-42
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 3e-42
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 5e-41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 145 Back     alignment and structure
 Score =  151 bits (383), Expect = 2e-48
 Identities = 102/128 (79%), Positives = 115/128 (89%)

Query: 14  MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
           MK N  VTS R KNRKRHFNAPSHIRR+IMS+PLSKELRQKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 74  HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
           HYKGQQ+GKVVQ YRKK+VIYIE++QR+K NG TV+VGIHPSK VI +LK+DKDRKKI+E
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 134 RRAKGRAA 141
           R+AK R  
Sbjct: 121 RKAKSRQV 128
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Length = 135 Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Length = 127 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 100.0
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 100.0
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 100.0
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 100.0
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 100.0
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 100.0
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 99.93
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 99.9
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 99.89
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 99.85
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 99.85
1nz9_A58 Transcription antitermination protein NUSG; transc 98.66
3p8b_B152 Transcription antitermination protein NUSG; transc 98.12
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 97.54
2jvv_A181 Transcription antitermination protein NUSG; transc 97.2
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 96.83
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 96.77
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 96.09
1m1h_A248 Transcription antitermination protein NUSG; transc 95.5
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 91.87
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 91.37
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 90.48
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 89.02
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 88.76
2xzm_W260 40S ribosomal protein S4; ribosome, translation; 3 88.04
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 87.13
1yfb_A59 Transition state regulatory protein ABRB; , homodi 82.12
2joy_A96 50S ribosomal protein L14E; protein solution struc 81.73
1qp2_A70 Protein (PSAE protein); mainly beta, roll, pleckst 81.24
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
Probab=100.00  E-value=5.9e-61  Score=361.67  Aligned_cols=126  Identities=52%  Similarity=0.828  Sum_probs=124.1

Q ss_pred             eeecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEE
Q psy10530         14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI   93 (141)
Q Consensus        14 mk~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V   93 (141)
                      |||||+||||||||||+|||||+|+|+++||||||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|
T Consensus         2 ~k~~~~vss~~rKqRK~~f~Ap~h~r~k~msa~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk~-GkV~~V~~kk~~V   80 (127)
T 3u5e_Y            2 AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQE-GKISSVYRLKFAV   80 (127)
T ss_dssp             CCCCSSCCCCHHHHHHHHHTCCHHHHHHHTEEEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTCE-EEEEEEEGGGTEE
T ss_pred             CccCCccCCCchhhHHHhhcCCcchhhhheeCcCCHHHHHHhCcCcccccCCCEEEEeecCCCCcc-ceEEEEECCCCEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             EEeeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhccc
Q psy10530         94 YIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRA  140 (141)
Q Consensus        94 ~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~~  140 (141)
                      +|||||++|++|.++|+|||||||+|+||+||++|+++||+++++++
T Consensus        81 ~VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~dk~R~~~lerk~~~~~  127 (127)
T 3u5e_Y           81 QVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE  127 (127)
T ss_dssp             EEETCEEECSSSCEEECCBCGGGEEEEECCCCHHHHHHHHHTTCCCC
T ss_pred             EEeCeEEECCCCcEEEcccchHHEEEEccccCcHHHHHhhhhhhcCC
Confidence            99999999999999999999999999999999999999999998874
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 141
d1vqot1119 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) { 5e-38
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  123 bits (310), Expect = 5e-38
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 21  TSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQV 80
           +    K RK    AP H R + + A LS +LR++Y  R++ V   D V+V+RG + G++ 
Sbjct: 1   SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEE- 59

Query: 81  GKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDK-DRKKIIERRAK 137
           G+V+     K VI++E +  +K +G  V   +  S   +  L ++   R+  +E    
Sbjct: 60  GEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD 117

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 100.0
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 99.83
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 99.82
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 99.76
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.92
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.86
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 96.74
d1vhka172 Hypothetical protein YqeU {Bacillus subtilis [TaxI 82.42
d1e32a186 Membrane fusion ATPase p97 N-terminal domain , P97 81.88
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.5e-50  Score=299.08  Aligned_cols=117  Identities=29%  Similarity=0.496  Sum_probs=113.5

Q ss_pred             cCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeE
Q psy10530         21 TSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQR  100 (141)
Q Consensus        21 ss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~  100 (141)
                      |+|||||||++||||+|+|+++|+||||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|+|||||+
T Consensus         1 S~~prKqRk~~~~ap~h~r~k~m~a~LskeLr~k~~~r~~~IkkGD~V~Vi~Gk~KGk~-GkV~~V~~k~~~V~Vegin~   79 (119)
T d1vqot1           1 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEE-GEVINVDLDKAVIHVEDVTL   79 (119)
T ss_dssp             CCCHHHHHHHHHTCCGGGGGGGGEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCE-EEEEEEETTTTEEEETTCEE
T ss_pred             CCCcchhHHhhccCCcchhhheeeCccChhhHHHhCCcccceeCCCEEEEeecCCCCCc-ceEEEEECCCCEEEEeCcEE
Confidence            79999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             eccCCcEEEecccccceEEEeCCCCh-hHHHHhhhhhhc
Q psy10530        101 DKVNGATVYVGIHPSKCVIVKLKMDK-DRKKIIERRAKG  138 (141)
Q Consensus       101 ~K~~G~~v~~pIhpSNV~i~~l~ldk-~R~k~Le~k~~~  138 (141)
                      .+.+|+++|+|||||||+|+++++++ +|.++||+++++
T Consensus        80 ~k~~~k~~~~pIh~SNv~i~~~~~~~~~R~~~le~kd~s  118 (119)
T d1vqot1          80 EKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDS  118 (119)
T ss_dssp             ECTTSCEEECCBCGGGEEEEECCCCSHHHHHHHHCSSSC
T ss_pred             EecCCceeeccCchHHEEEEeCcCCcchhhhhhhccccC
Confidence            99999999999999999999999976 899999988753
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure