Psyllid ID: psy10545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------143
Protein Sequence
MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Secondary Structure (PSIPRED)
cccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccEEEccccccccccHHcccccccccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEcccccccccEEEEEEcccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHccccccccHHHHcccccccHHHHHHHHHHccccccccccccccEEEEEEEEccccEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccEEEcccccccHHHHHHHcHHHcccccccEEEcccccccccccccccccHHHHHHHHHHcccccEEEcccEEEEEcccEEEEccccEEEccEEEEccccccccccccccEEcccEEEEcccccccccEEEEcccccccccEEEEEEcccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccEEEEEcccccHHHHHHHHHcccccEEEEcccccccccEEEEEEcccEEcccccccccHHHHHHHHHHccccccccEEcEEcccccEEEcccccEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHcccEEEcccccEEEEEEccEEEEEEEccccEEEccEEEEcccHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccEEEccccHHHHHHHHHccccccccccEEEEccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHcccHHEEEEHHHHHHHHHHHHHHHHccccEEEEEEccccccccEEEEccccccHHHHHHHccEEEEcccccEEEccHHccEccccEEEEEccccccccEEEEEEEEEEccccccccEEEEEccccHccccEEEEEEcccccccEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEcHccccEEEEEccccccccccccEccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHcccccccHEEEEEccccHHHHHHHHHHHcccEEEEEcccccEEccccEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccEcccccccHHHHHHHHHHHHccccccEEEEccccccccccccEEcHHHHHHHHHHHHcccccEEEcEEEEEEcccEEEEcccEEEEEEEEEEccccccccccccEEEEEEEEEEEccccccccEEEEEccHHHcccccEEEEEccccccEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEcHHcccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccEEccccEEEccHHHHHHHHHHHcccHHHcEEEEEcccEEEEEEccccEEEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHcccccccHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHcccEEEEcccEEEEEEEccEEEEEEEccccEEEccEEEEcccHHHHHHHHccccccccccHHHHHHccccccEEEEEEcccccccccccEEEEEcHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHEEEEEEEcHHHHHHHHcccccccccccccEEEEccEcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHEEEHHHHHHHHHc
Coil and Loop (DISEMBL)
mnfeknyyWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMlikplityswpsyqvkfpkfnrkifSGYYSICSKHLNSYLIRALGQqwnlssphgldipiimdatvnqkndeyhfiytlpltpnslmiedtrytkkpflKIDMLKKSIKDYAIKNRWKLkniereeigsipialknekIIKFKKTICVGLRANLlhattgyslPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNrlfflsnsrchlDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFqfgvgypntnqgLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHqndisssqymlikplityswpsyqvkfpkfnrkifSGYYSICSKHLNSYLIRALGInnflfnnktveiitptsirinnkkiinanciidgrglknsqfdGIYQIFLGqqwnlssphgldipiimdatvnqkndeyhfiytlpltpnslmiedtrytkkpflKIDMLKKSIKDYAIKNRWKLkniereeigsipialknekIIKFKKTICVGLRANLlhattgyslPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNrlfflsnsrchlDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEqrdkpggrayvykqdgfifdagptvitdpnsIKLLFDLSKNRMENYvnllpikpfyrlywgkekflnYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYlkqafsfnslfiggnpfstsSIYTLIHALEYewgiwfpkggVGALIKALIKLFQNLGGNLILNSQVISIYVnnnkvnkvhlkngqifdadiiVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSeqythlahhtiffpsnyKKSIENIFgknfsrdnlsiylhspsvtdlslaptgcstfyalipvpnlsnssinwsEESIKLKNIVFMYLEQYCIPNLRKKLITqriftpndfKDVLGSYlgsafsfaplltqsawfrphnrdknltnlyfvgagthpgaANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCddvidnqicgnrskFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLigvkekdtLNCARNLGIAFqltnisrdviddfyvgrcylpldwlrneglnksnFVLAENRKKLFKVVTRILDVAEFYYSsslvklntlplrstlaIVTSWSIYREI
Flexible Loop (DISEMBL)
MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTlpltpnslmiEDTRYTKKPFLKIDMLKKSikdyaiknrwklkniereeigsipialknekiIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEiitptsirinnkkiiNANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTlpltpnslmiEDTRYTKKPFLKIDMLKKSikdyaiknrwklkniereeigsipialknekiIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIfdagptvitdpnSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSkflkknvsmkhklkilriKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIafqltnisrdvidDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSslvklntlplrstlaivtswsiyrei
Low Complexity Region (SEG)
MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPklnvlllelsssvknHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSgagiggialaiRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPklnvlllelsssvknHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSirinnkkiinanciiDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSgagiggialaiRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYvnnnkvnkvhlknGQIFDADIIVSNADIINTYRNLLGQYAFGkkkymnlikkkMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLsnssinwseesiKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Disordered region (IsUnstruct)
****KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIY***
Disordered Region (DISOPRED)
****KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTA*********RDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYA*****FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ**************KMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQIC****************LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Disordered Region (DISEMBL)
MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Disordered Region (DISPRO)
*NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKxxxxxxxxxxxxxxxxxxxxxDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1428	2.2.26 [Sep-21-2011]
P22871	492	Phytoene desaturase (lyco	N/A	N/A	0.331	0.961	0.575	1e-175
P21685	492	Phytoene desaturase (lyco	yes	N/A	0.338	0.981	0.547	1e-167
P54978	501	Phytoene desaturase (lyco	N/A	N/A	0.347	0.990	0.482	1e-144
P17054	524	Phytoene desaturase (neur	yes	N/A	0.317	0.866	0.362	3e-88
P54980	518	Phytoene desaturase (neur	yes	N/A	0.324	0.895	0.356	1e-84
Q01331	386	Lycopene cyclase OS=Esche	N/A	N/A	0.242	0.898	0.427	1e-81
P21687	382	Lycopene cyclase OS=Panto	no	N/A	0.242	0.908	0.403	2e-74
P21683	309	Phytoene synthase OS=Pant	no	N/A	0.172	0.796	0.489	3e-65
P54979	517	zeta-carotene-forming phy	no	N/A	0.310	0.858	0.285	1e-63
P22872	309	Phytoene synthase OS=Esch	N/A	N/A	0.172	0.796	0.477	6e-63

>sp|P22871|CRTI_ESCVU Phytoene desaturase (lycopene-forming) OS=Escherichia vulneris GN=crtI PE=3 SV=1

 Score =  617 bits (1590), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 275/478 (57%), Positives = 367/478 (76%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI T++LEQRDKPGGRAYV+   GF FDAGPTVITDP +++ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPTVLLEQRDKPGGRAYVWHDQGFTFDAGPTVITDPTALEALF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  RME+YV LLP+KPFYRL W   K L+Y ++  +LE QI +FN  D++GYR FL Y
Sbjct: 68   TLAGRRMEDYVRLLPVKPFYRLCWESGKTLDYANDSAELEAQITQFNPRDVEGYRRFLAY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VF+EGYL   S  FL+  DML   P+L+K++AW+SVY  VS+FI++++L+QAFSF+S
Sbjct: 128  SQAVFQEGYLRLGSVPFLSFRDMLRAGPQLLKLQAWQSVYQSVSRFIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL+  ++KLF +LGG + LN++V  +
Sbjct: 188  LLVGGNPFTTSSIYTLIHALEREWGVWFPEGGTGALVNGMVKLFTDLGGEIELNARVEEL 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
             V +N+V++V L +G+IFD D + SNAD++NTY+ LLG +  G+K+   L +K MSNSLF
Sbjct: 248  VVADNRVSQVRLADGRIFDTDAVASNADVVNTYKKLLGHHPVGQKRAAALERKSMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL++ ++ LAHHTI F   Y++ I+ IF  +   D+ S+YLHSP VTD SLAP GC
Sbjct: 308  VLYFGLNQPHSQLAHHTICFGPRYRELIDEIFTGSALADDFSLYLHSPCVTDPSLAPPGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
            ++FY L PVP+L N+ ++W++E  KL++ +F YLE+  +P LR +L+TQRIFTP DF D 
Sbjct: 368  ASFYVLAPVPHLGNAPLDWAQEGPKLRDRIFDYLEERYMPGLRSQLVTQRIFTPADFHDT 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSS 1195
            L ++LGSAFS  PLLTQSAWFRPHNRD ++ NLY VGAGTHPGA    + A +K+ +S
Sbjct: 428  LDAHLGSAFSIEPLLTQSAWFRPHNRDSDIANLYLVGAGTHPGAGIPGVVASAKATAS 485

This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds.
Escherichia vulneris (taxid: 566)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: -

>sp|P21685|CRTI_PANAN Phytoene desaturase (lycopene-forming) OS=Pantoea ananas GN=crtI PE=1 SV=1

 Score =  589 bits (1518), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 265/484 (54%), Positives = 360/484 (74%), Gaps = 1/484 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  +++ YV LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+Y
Sbjct: 68   ALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VFKEGYL   +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+S
Sbjct: 128  SRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG ++LN++V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHM 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
                NK+  VHL++G+ F    + SNAD+++TYR+LL Q+    K+   L  K+MSNSLF
Sbjct: 248  ETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL+  +  LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC
Sbjct: 308  VLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             ++Y L PVP+L  ++++W+ E  KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D 
Sbjct: 368  GSYYVLAPVPHLGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQ 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197
            L +Y GSAFS  P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ +
Sbjct: 428  LNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGL 486

Query: 1198 KLFD 1201
             L D
Sbjct: 487  MLED 490

This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds.

Pantoea ananas (taxid: 553)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P54978|CRTI_PARSN Phytoene desaturase (lycopene-forming) OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtI PE=3 SV=2

 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/497 (48%), Positives = 332/497 (66%), Gaps = 1/497 (0%)

Query: 705  NKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGP 764
            N  S   K  I  GAG GG+ALAIRLQ+AGI+T ++E RDKPGGRAYV+   G +FDAGP
Sbjct: 2    NAHSPAAKTAIVIGAGFGGLALAIRLQSAGIATTLVEARDKPGGRAYVWHDQGHLFDAGP 61

Query: 765  TVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFN 824
            TVITDP+++K L+ L+   M   V L+P+ PFYRL W   K  +Y +    LE+QIA+FN
Sbjct: 62   TVITDPDALKELWALTGQDMARDVTLMPVSPFYRLMWPGGKVFDYVNEADQLERQIAQFN 121

Query: 825  LNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFI 884
             +D++GYR F +Y+++V++EGY+   +  FL +  ML   P L+K++A+KSV++ V+ FI
Sbjct: 122  PDDLEGYRRFRDYAEEVYQEGYVKLGTVPFLKLGQMLKAAPALMKLEAYKSVHAKVATFI 181

Query: 885  KNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL 944
            K+ YL+QAFS+++L +GGNPFSTSSIY LIHALE   G+WF KGG   L+  ++ LF+ L
Sbjct: 182  KDPYLRQAFSYHTLLVGGNPFSTSSIYALIHALERRGGVWFAKGGTNQLVAGMVALFERL 241

Query: 945  GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKY 1004
            GG ++LN++V  I  +  +   V L +G+   AD++ SN D+++ YR+LLG  A G+ + 
Sbjct: 242  GGQMLLNAKVARIDTDGPRATGVTLADGRALTADMVASNGDVMHNYRDLLGHTARGQSRA 301

Query: 1005 MNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHS 1064
             +L  K+ S SLFV++FGL E    +AHHTI F   YK+ +  IF      ++ S+YLHS
Sbjct: 302  KSLNAKRWSMSLFVLHFGLREAPKDVAHHTILFGPRYKELVNEIFKGPKLAEDFSLYLHS 361

Query: 1065 PSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLI 1124
            P  TD  +AP G ST Y L PVP+L  + I+W+ E  +  + +   LE+  IPNLR  L 
Sbjct: 362  PCTTDPEMAPPGMSTHYVLAPVPHLGRADIDWAVEGPRYADRILASLEERLIPNLRANLT 421

Query: 1125 TQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANK 1184
            T RIFTP+DF   L ++ GSAFS  P+LTQSAWFRPHNRDK + N Y VGAGTHPGA   
Sbjct: 422  TTRIFTPSDFASELNAHHGSAFSVEPILTQSAWFRPHNRDKTIRNFYLVGAGTHPGAGIP 481

Query: 1185 IIKAGSKSFSSAIKLFD 1201
             +  GS   ++ + L D
Sbjct: 482  GV-VGSAKATAQVMLSD 497

This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds.

Paracoccus sp. (strain N81106 / MBIC 01143) (taxid: 81397)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P17054|CRTI_RHOCB Phytoene desaturase (neurosporene-forming) OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtI PE=1 SV=1

 Score =  328 bits (840), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 274/461 (59%), Gaps = 7/461 (1%)

Query: 728  IRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENY 787
            +RL   G    ++++ D+PGGR     + G  FD GPT++T P+ ++ L+       +  
Sbjct: 25   MRLGAKGYKVTVVDRLDRPGGRGSSITKGGHRFDLGPTIVTVPDRLRELWADCGRDFDKD 84

Query: 788  VNLLPIKPFYRL-YWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGY 846
            V+L+P++PFY + +   EK+  Y D+ K ++ ++A+ +  D++G+R F+  +K  ++ GY
Sbjct: 85   VSLVPMEPFYTIDFPDGEKYTAYGDDAK-VKAEVARISPGDVEGFRHFMWDAKARYEFGY 143

Query: 847  LSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFS 906
             +   K    + D++ +LP    ++A +SVY    + +K+D+L+ A SF+ LFIGG+PF 
Sbjct: 144  ENLGRKPMSKLWDLIKVLPTFGWLRADRSVYGHAKKMVKDDHLRFALSFHPLFIGGDPFH 203

Query: 907  TSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVN 965
             +S+Y L+  LE ++G+ +  GGV A+  A+ K+  + GG + LN++V  I V+ + K  
Sbjct: 204  VTSMYILVSQLEKKFGVHYAIGGVQAIADAMAKVITDQGGEMRLNTEVDEILVSRDGKAT 263

Query: 966  KVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYF---G 1022
             + L +G    A ++VSNAD  +TY+ LL      +     L KK+ S  LFV YF   G
Sbjct: 264  GIRLMDGTELPAQVVVSNADAGHTYKRLLRNRDRWRWTDEKLDKKRWSMGLFVWYFGTKG 323

Query: 1023 LSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYA 1082
             ++ +  + HHT+     YK+ +++IF K    +++S+Y+H PSVTD + AP G  TFY 
Sbjct: 324  TAKMWKDVGHHTVVVGPRYKEHVQDIFIKGELAEDMSLYVHRPSVTDPTAAPKGDDTFYV 383

Query: 1083 LIPVPNLS-NSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSY 1141
            L PVPNL  ++ ++WS E+ K K  V   +E+  +P + +K+  + +FTP  F+D   S 
Sbjct: 384  LSPVPNLGFDNGVDWSVEAEKYKAKVLKVIEERLLPGVAEKITEEVVFTPETFRDRYLSP 443

Query: 1142 LGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAA 1182
            LG+ FS  P + QSAWFRPHN  + +  LY VGAGTHPGA 
Sbjct: 444  LGAGFSLEPRILQSAWFRPHNASEEVDGLYLVGAGTHPGAG 484

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P54980|CRTI_RHOS4 Phytoene desaturase (neurosporene-forming) OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtI PE=3 SV=2

 Score =  316 bits (809), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 265/469 (56%), Gaps = 5/469 (1%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            G+G+GG+A A+RL   G    ++++ D PGGR     Q+G  FD GPT++T P S++ L+
Sbjct: 17   GSGLGGLAAAMRLGAKGWRVTVIDKLDVPGGRGSSITQEGHRFDLGPTIVTVPQSLRDLW 76

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
                   +  V L PI PFY + W          + + ++ ++A+ +  D+ GY  FL  
Sbjct: 77   KTCGRDFDADVELKPIDPFYEVRWPDGSHFTVRQSTEAMKAEVARLSPGDVAGYEKFLKD 136

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+K +  GY     +S   + D++ +LP    ++A +SVY   +  +K++ L+ A SF+ 
Sbjct: 137  SEKRYWFGYEDLGRRSMHKLWDLIKVLPTFGMMRADRSVYQHAALRVKDERLRMALSFHP 196

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            LFIGG+PF+ +S+Y L+  LE E+G+ +  GGV A+  A+ K+ +  GG+  +N++V  I
Sbjct: 197  LFIGGDPFNVTSMYILVSQLEKEFGVHYAIGGVAAIAAAMAKVIEGQGGSFRMNTEVDEI 256

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
             V       V L +G++  A ++VSNAD  +TY  LL  +   +    ++  ++ S  LF
Sbjct: 257  LVEKGTATGVRLASGEVLRAGLVVSNADAGHTYMRLLRNHPRRRWTDAHVKSRRWSMGLF 316

Query: 1018 VIYF---GLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
            V YF   G    +  + HHTI     YK  +E+IF K     ++S+Y+H PS+TD ++AP
Sbjct: 317  VWYFGTKGTKGMWPDVGHHTIVNAPRYKGLVEDIFLKGKLAKDMSLYIHRPSITDPTVAP 376

Query: 1075 TGCSTFYALIPVPNLSNSS-INWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPND 1133
             G  TFYAL PVP+L  +  ++W   +   +  V   LEQ  +P + +++    +FTP  
Sbjct: 377  EGDDTFYALSPVPHLKQAQPVDWQAVAEPYRESVLEVLEQ-SMPGIGERIGPSLVFTPET 435

Query: 1134 FKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAA 1182
            F+D   S  G+ FS  P + QSAWFRPHN  + + NL+ VGAGTHPGA 
Sbjct: 436  FRDRYLSPWGAGFSIEPRILQSAWFRPHNISEEVANLFLVGAGTHPGAG 484

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q01331|CRTY_ESCVU Lycopene cyclase OS=Escherichia vulneris GN=crtY PE=4 SV=1

 Score =  306 bits (783), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 154/360 (42%), Positives = 225/360 (62%), Gaps = 13/360 (3%)

Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQNDISSSQYMLIKPLITYSWPS 423
           GL N +IAW L+Q  P+LN+LL+E       NH WSFH++D++  Q+  + PL+ ++WP 
Sbjct: 10  GLANGLIAWRLRQRYPQLNLLLIEAGEQPGGNHTWSFHEDDLTPGQHAWLAPLVAHAWPG 69

Query: 424 YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKII 483
           Y+V+FP   R++  GYYSI S+     L +ALG N +L  N +V  + P S+R+ N + +
Sbjct: 70  YEVQFPDLRRRLARGYYSITSERFAEALHQALGENIWL--NCSVSEVLPNSVRLANGEAL 127

Query: 484 NANCIIDGRGLK-NSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTL 542
            A  +IDGRG+  +S     YQ+FLGQQW L+ PHGL +PI+MDATV Q+   Y F+YTL
Sbjct: 128 LAGAVIDGRGVTASSAMQTGYQLFLGQQWRLTQPHGLTVPILMDATVAQQQG-YRFVYTL 186

Query: 543 PLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKI 602
           PL+ ++L+IEDTRY   P    + L++++ DYA    W+L  +EREE G +PI L  +  
Sbjct: 187 PLSADTLLIEDTRYANVPQRDDNALRQTVTDYAHSKGWQLAQLEREETGCLPITLAGDIQ 246

Query: 603 IKFKKTICV---GLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFI 659
             +     V   G+RA L H TTGYSLP+A+ LA+ IA     + ++ S  L++L ++F 
Sbjct: 247 ALWADAPGVPRSGMRAGLFHPTTGYSLPLAVALADAIAD----SPRLGSVPLYQLTRQFA 302

Query: 660 INHQKKQRFFCMLNRLFFLS-NSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSG 718
             H ++Q FF +LNR+ FL+        +MQ FY LP+  +  FYA +LS FDK RI +G
Sbjct: 303 ERHWRRQGFFRLLNRMLFLAGREENRWRVMQRFYGLPEPTVERFYAGRLSLFDKARILTG 362

Catalyzes the cyclization reaction which converts lycopene to beta-carotene.

Escherichia vulneris (taxid: 566)

>sp|P21687|CRTY_PANAN Lycopene cyclase OS=Pantoea ananas GN=crtY PE=4 SV=1

 Score =  282 bits (721), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 145/359 (40%), Positives = 213/359 (59%), Gaps = 12/359 (3%)

Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQNDISSSQYMLIKPLITYSWPS 423
           GL N +IA  L+Q  P + +LL++ +     NH WSFH +D++ SQ+  I PL+ + WP 
Sbjct: 13  GLANGLIALRLQQQQPDMRILLIDAAPQAGGNHTWSFHHDDLTESQHRWIAPLVVHHWPD 72

Query: 424 YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKII 483
           YQV+FP   RK+ SGY+ I S+     L R  G +  L+ +  V  +   S+R+   ++I
Sbjct: 73  YQVRFPTRRRKLNSGYFCITSQRFAEVLQRQFGPH--LWMDTAVAEVNAESVRLKKGQVI 130

Query: 484 NANCIIDGRGL-KNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTL 542
            A  +IDGRG   NS     +Q F+GQ+W LS PHGL  PIIMDATV+Q+N  Y F+Y+L
Sbjct: 131 GARAVIDGRGYAANSALSVGFQAFIGQEWRLSHPHGLSSPIIMDATVDQQNG-YRFVYSL 189

Query: 543 PLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKN--E 600
           PL+P  L+IEDT Y     L  +  +++I DYA +  W+L+ + REE G++PI L    +
Sbjct: 190 PLSPTRLLIEDTHYIDNATLDPECARQNICDYAAQQGWQLQTLLREEQGALPITLSGNAD 249

Query: 601 KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFII 660
              + +   C GLRA L H TTGYSLP+A+ +A+ ++   + T    S  +   +  F  
Sbjct: 250 AFWQQRPLACSGLRAGLFHPTTGYSLPLAVAVADRLSALDVFT----SASIHHAITHFAR 305

Query: 661 NHQKKQRFFCMLNRLFFLSN-SRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSG 718
              ++Q FF MLNR+ FL+  +     +MQ FY LP+ +I  FYA KL+  D++RI SG
Sbjct: 306 ERWQQQGFFRMLNRMLFLAGPADSRWRVMQRFYGLPEDLIARFYAGKLTLTDRLRILSG 364

Catalyzes the cyclization reaction which converts lycopene to beta-carotene.

Pantoea ananas (taxid: 553)

>sp|P21683|CRTB_PANAN Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 SV=2

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 121/247 (48%), Positives = 166/247 (67%), Gaps = 1/247 (0%)

Query: 1182 ANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMK 1241
            A + +  GSKSF++A KLFD   R  VLMLYAWCR+CDDVID+Q  G +++        +
Sbjct: 10   AVETMAVGSKSFATASKLFDAKTRRSVLMLYAWCRHCDDVIDDQTLGFQARQPALQTP-E 68

Query: 1242 HKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITL 1301
             +L  L +KT++A  G +M EPAF A Q++   H       F+HL+GF MDV E  Y  L
Sbjct: 69   QRLMQLEMKTRQAYAGSQMHEPAFAAFQEVAMAHDIAPAYAFDHLEGFAMDVREAQYSQL 128

Query: 1302 DETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYL 1361
            D+TL YCYHVAG +GL++A ++GV++  TL+ A +LG+AFQLTNI+RD++DD + GRCYL
Sbjct: 129  DDTLRYCYHVAGVVGLMMAQIMGVRDNATLDRACDLGLAFQLTNIARDIVDDAHAGRCYL 188

Query: 1362 PLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTS 1421
            P  WL +EGLNK N+   ENR+ L ++  R++  AE YY S+   L  LPLRS  AI T+
Sbjct: 189  PASWLEHEGLNKENYAAPENRQALSRIARRLVQEAEPYYLSATAGLAGLPLRSAWAIATA 248

Query: 1422 WSIYREI 1428
              +YR+I
Sbjct: 249  KQVYRKI 255

Catalyzes the reaction from prephytoene diphosphate to phytoene.

Pantoea ananas (taxid: 553)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 2

>sp|P54979|CRTJ_MYXXA zeta-carotene-forming phytoene desaturase OS=Myxococcus xanthus GN=carA2 PE=1 SV=1

 Score =  246 bits (628), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 234/452 (51%), Gaps = 8/452 (1%)

Query: 734  GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPI 793
            G    + E+   PGGR    + DGF +D GPT++  P   +  F     R+E+Y+ LL  
Sbjct: 30   GFDVQVFEKTQGPGGRCNRLQVDGFTWDLGPTIVLMPEVFEETFRAVGRRIEDYLTLLRC 89

Query: 794  KPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKS 853
             P YR+++     + +   +  + +++ +        Y  FL   +  ++        ++
Sbjct: 90   DPNYRVHFRDRSDVTFTSELCAMGRELERVEPGSYARYLAFLAQGRVQYRTSLDHLVGRN 149

Query: 854  FLTINDMLF--ILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIY 911
            +  + D L   +L ++ +++A + +Y+ VS+F +++ L+ A +F ++++G +P+++ ++Y
Sbjct: 150  YAGLRDYLSPRVLARIFQVRAHRRMYADVSRFFQDERLRAAMTFQTMYLGVSPYASPAVY 209

Query: 912  TLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN 971
             L+   E   GIWFPKGG+ A+ +AL +L +  G      + V  I  +  +   V L+ 
Sbjct: 210  GLLPFTELGVGIWFPKGGLYAIPQALERLAREEGVRFHYGAPVERILTDGGRTRGVRLEG 269

Query: 972  GQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA 1031
            G++ +AD ++ NAD+   Y  LL   A   K+   L   + ++S +++Y G+  +Y  L 
Sbjct: 270  GEVVEADAVLCNADLPYAYEKLLDPKATTLKRKEKL---RYTSSGYMLYLGMKRRYPELL 326

Query: 1032 HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSN 1091
            HH + F  +YK S ++IF      D  S Y+++P+ TD SLAP G    Y L+PVP+  +
Sbjct: 327  HHNVVFGRDYKGSFDDIFEFRVPEDP-SFYVNAPTRTDASLAPEGKDALYVLVPVPH-QH 384

Query: 1092 SSINWSEESIKLKNIVFMYLEQYCIPNLRKKL-ITQRIFTPNDFKDVLGSYLGSAFSFAP 1150
              ++W  E  K++   F  + +   P+L   + + +R  TP+D+        GS F  + 
Sbjct: 385  PDLDWKVEGPKVRAKFFARMAELGFPSLESDIEVERRSSTPDDWAGTFNLARGSGFGLSQ 444

Query: 1151 LLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAA 1182
              TQ   FRP N+D  + NL+FVGA T PG  
Sbjct: 445  NFTQIGPFRPSNQDARVKNLFFVGASTQPGTG 476

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Myxococcus xanthus (taxid: 34)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P22872|CRTB_ESCVU Phytoene synthase OS=Escherichia vulneris GN=crtB PE=3 SV=1

 Score =  243 bits (621), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 118/247 (47%), Positives = 161/247 (65%), Gaps = 1/247 (0%)

Query: 1182 ANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMK 1241
            A + +  GSKSF++A KLFDP  R  VLMLY WCR+CDDVID+Q  G  S+         
Sbjct: 10   ATQTMANGSKSFATAAKLFDPATRRSVLMLYTWCRHCDDVIDDQTHGFASE-AAAEEEAT 68

Query: 1242 HKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITL 1301
             +L  LR  T  A  G +M++PAF A Q++   H     +  +HLDGF MDV +  Y+T 
Sbjct: 69   QRLARLRTLTLAAFEGAEMQDPAFAAFQEVALTHGITPRMALDHLDGFAMDVAQTRYVTF 128

Query: 1302 DETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYL 1361
            ++TL YCYHVAG +GL++A ++GV+++  L+ A +LG+AFQLTNI+RD+IDD  + RCYL
Sbjct: 129  EDTLRYCYHVAGVVGLMMARVMGVRDERVLDRACDLGLAFQLTNIARDIIDDAAIDRCYL 188

Query: 1362 PLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTS 1421
            P +WL++ GL   N+   ENR  L +V  R++D AE YY SS   L+ LP R   AI T+
Sbjct: 189  PAEWLQDAGLTPENYAARENRAALARVAERLIDAAEPYYISSQAGLHDLPPRCAWAIATA 248

Query: 1422 WSIYREI 1428
             S+YREI
Sbjct: 249  RSVYREI 255

Catalyzes the reaction from prephytoene diphosphate to phytoene.

Escherichia vulneris (taxid: 566)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1428
551855	486	phytoene dehydrogenase [Pantoea agglomer	0.331	0.973	0.575	1e-173
117514	492	RecName: Full=Phytoene desaturase (lycop	0.331	0.961	0.575	1e-173
377578871	492	phytoene dehydrogenase [Escherichia herm	0.329	0.955	0.56	1e-167
254262299	497	Phytoene dehydrogenase crtI [Enterobacte	0.334	0.961	0.560	1e-167
254262245	497	Phytoene dehydrogenase crtI [Enterobacte	0.334	0.961	0.556	1e-166
72536062	493	phytoene desaturase [Enterobacteriaceae	0.332	0.963	0.538	1e-165
378769593	492	phytoene dehydrogenase CrtI [Pantoea ana	0.338	0.981	0.549	1e-165
117515	492	RecName: Full=Phytoene desaturase (lycop	0.338	0.981	0.547	1e-165
386018482	492	phytoene dehydrogenase CrtI [Pantoea ana	0.338	0.981	0.547	1e-165
390434747	492	phytoene dehydrogenase [Pantoea agglomer	0.338	0.981	0.543	1e-165

>gi|551855|gb|AAA64981.1| phytoene dehydrogenase [Pantoea agglomerans]

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 275/478 (57%), Positives = 367/478 (76%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI T++LEQRDKPGGRAYV+   GF FDAGPTVITDP +++ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPTVLLEQRDKPGGRAYVWHDQGFTFDAGPTVITDPTALEALF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  RME+YV LLP+KPFYRL W   K L+Y ++  +LE QI +FN  D++GYR FL Y
Sbjct: 68   TLAGRRMEDYVRLLPVKPFYRLCWESGKTLDYANDSAELEAQITQFNPRDVEGYRRFLAY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VF+EGYL   S  FL+  DML   P+L+K++AW+SVY  VS+FI++++L+QAFSF+S
Sbjct: 128  SQAVFQEGYLRLGSVPFLSFRDMLRAGPQLLKLQAWQSVYQSVSRFIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL+  ++KLF +LGG + LN++V  +
Sbjct: 188  LLVGGNPFTTSSIYTLIHALEREWGVWFPEGGTGALVNGMVKLFTDLGGEIELNARVEEL 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
             V +N+V++V L +G+IFD D + SNAD++NTY+ LLG +  G+K+   L +K MSNSLF
Sbjct: 248  VVADNRVSQVRLADGRIFDTDAVASNADVVNTYKKLLGHHPVGQKRAAALERKSMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL++ ++ LAHHTI F   Y++ I+ IF  +   D+ S+YLHSP VTD SLAP GC
Sbjct: 308  VLYFGLNQPHSQLAHHTICFGPRYRELIDEIFTGSALADDFSLYLHSPCVTDPSLAPPGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
            ++FY L PVP+L N+ ++W++E  KL++ +F YLE+  +P LR +L+TQRIFTP DF D 
Sbjct: 368  ASFYVLAPVPHLGNAPLDWAQEGPKLRDRIFDYLEERYMPGLRSQLVTQRIFTPADFHDT 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSS 1195
            L ++LGSAFS  PLLTQSAWFRPHNRD ++ NLY VGAGTHPGA    + A +K+ +S
Sbjct: 428  LDAHLGSAFSIEPLLTQSAWFRPHNRDSDIANLYLVGAGTHPGAGIPGVVASAKATAS 485

Source: Pantoea agglomerans

Species: Pantoea agglomerans

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|117514|sp|P22871.1|CRTI_ESCVU RecName: Full=Phytoene desaturase (lycopene-forming); AltName: Full=4-step phytoene desaturase; AltName: Full=Phytoene dehydrogenase gi|148402|gb|AAA24820.1| phytoene dehydrogenase [Pantoea agglomerans]

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 275/478 (57%), Positives = 367/478 (76%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI T++LEQRDKPGGRAYV+   GF FDAGPTVITDP +++ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPTVLLEQRDKPGGRAYVWHDQGFTFDAGPTVITDPTALEALF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  RME+YV LLP+KPFYRL W   K L+Y ++  +LE QI +FN  D++GYR FL Y
Sbjct: 68   TLAGRRMEDYVRLLPVKPFYRLCWESGKTLDYANDSAELEAQITQFNPRDVEGYRRFLAY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VF+EGYL   S  FL+  DML   P+L+K++AW+SVY  VS+FI++++L+QAFSF+S
Sbjct: 128  SQAVFQEGYLRLGSVPFLSFRDMLRAGPQLLKLQAWQSVYQSVSRFIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL+  ++KLF +LGG + LN++V  +
Sbjct: 188  LLVGGNPFTTSSIYTLIHALEREWGVWFPEGGTGALVNGMVKLFTDLGGEIELNARVEEL 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
             V +N+V++V L +G+IFD D + SNAD++NTY+ LLG +  G+K+   L +K MSNSLF
Sbjct: 248  VVADNRVSQVRLADGRIFDTDAVASNADVVNTYKKLLGHHPVGQKRAAALERKSMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL++ ++ LAHHTI F   Y++ I+ IF  +   D+ S+YLHSP VTD SLAP GC
Sbjct: 308  VLYFGLNQPHSQLAHHTICFGPRYRELIDEIFTGSALADDFSLYLHSPCVTDPSLAPPGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
            ++FY L PVP+L N+ ++W++E  KL++ +F YLE+  +P LR +L+TQRIFTP DF D 
Sbjct: 368  ASFYVLAPVPHLGNAPLDWAQEGPKLRDRIFDYLEERYMPGLRSQLVTQRIFTPADFHDT 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSS 1195
            L ++LGSAFS  PLLTQSAWFRPHNRD ++ NLY VGAGTHPGA    + A +K+ +S
Sbjct: 428  LDAHLGSAFSIEPLLTQSAWFRPHNRDSDIANLYLVGAGTHPGAGIPGVVASAKATAS 485

Source: Pantoea agglomerans

Species: Pantoea agglomerans

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|377578871|ref|ZP_09807845.1| phytoene dehydrogenase [Escherichia hermannii NBRC 105704] gi|377539732|dbj|GAB53010.1| phytoene dehydrogenase [Escherichia hermannii NBRC 105704]

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 266/475 (56%), Positives = 355/475 (74%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ+AGI T +LEQRDKPGGRAYV+  +GF FDAGPTVITDP++++ LF
Sbjct: 8    GAGFGGLALAIRLQSAGIQTTLLEQRDKPGGRAYVWHDEGFTFDAGPTVITDPSALEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
              +  R+E+YV+++P++PFYRL W   K  +Y +N   L++QIA FN  D++GY  FL Y
Sbjct: 68   AGAGKRLEDYVDMMPVEPFYRLCWEDGKRFDYSNNESLLQRQIADFNPADVEGYARFLEY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            SK VFKEGYL   +  FL  +DM+ + P+L++++AW+SVY  VS+FIK D+L+QAFSF+S
Sbjct: 128  SKAVFKEGYLRLGATPFLQFSDMVKVSPQLMRLRAWESVYQAVSRFIKEDHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TS+IYTLIHALE EWG+WFP+GG GAL++ ++KLF +LGG L LN+ V  I
Sbjct: 188  LLVGGNPFATSAIYTLIHALEREWGVWFPRGGTGALVQGMVKLFTDLGGKLELNTAVERI 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
             V   +V++V  ++G++F AD + SNAD++NTY+ LLG Y  G+ K   L  K+MSNSLF
Sbjct: 248  EVEQQRVSRVVTQDGRVFAADAVASNADVVNTYQKLLGHYPPGEAKGRKLAGKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL+  +  LAHHTI F   YK+ ++ IF      D+ S+YLHSP  TD SLAP GC
Sbjct: 308  VLYFGLNATHPQLAHHTICFGPRYKELVQEIFHGATLSDDFSLYLHSPCATDPSLAPPGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
              FY L PVP+L N+ ++W+ E   L+  +F YLE   +PNLR++L+T R+FTP+DF+  
Sbjct: 368  GAFYVLTPVPHLGNAPLDWTVEGPALRERIFDYLEARYMPNLRQQLVTHRMFTPDDFQHT 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKS 1192
            LG++LGSAFS  PLLTQSAWFRPHNRD+NL NLY VGAGTHPGA    +   +K+
Sbjct: 428  LGAHLGSAFSLEPLLTQSAWFRPHNRDENLKNLYLVGAGTHPGAGVPGVVGSAKA 482

Source: Escherichia hermannii NBRC 105704

Species: Escherichia hermannii

Genus: Escherichia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|254262299|emb|CAZ90623.1| Phytoene dehydrogenase crtI [Enterobacter pulveris]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 268/478 (56%), Positives = 357/478 (74%)

Query: 715  IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIK 774
            I  GAG GG+ALAIRLQ AGI T++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+
Sbjct: 9    IVIGAGFGGLALAIRLQAAGIPTLLLEQRDKPGGRAYVYEDQGFKFDAGPTVITDPSAIE 68

Query: 775  LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
             LF L+  +M +YV LLP+ PFYRL W   K L+Y+++ + LE QI +FN  D++GYR F
Sbjct: 69   ELFTLAGKKMADYVELLPVTPFYRLCWESGKVLDYDNDQQKLEAQITRFNPKDVEGYRQF 128

Query: 835  LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
            L YS+ VFKEGYL   +  FL+  DM+   P+L +++AW+SVY +VS+FI++DYL+QAFS
Sbjct: 129  LAYSQAVFKEGYLKLGTVPFLSFRDMMKAGPQLARLQAWRSVYGVVSKFIEDDYLRQAFS 188

Query: 895  FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
            F+SL +GGNPF+TSSIYTLIHALE EWG+WF +GG GAL++ L++LF++LGG L+LN++V
Sbjct: 189  FHSLLVGGNPFATSSIYTLIHALEREWGVWFARGGTGALVQGLVRLFEDLGGELVLNAKV 248

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
              I    ++V  V L++G+ F A  + SNAD+INTY+ LLG +  G ++   L +K+MSN
Sbjct: 249  KRIEAAGSRVTGVTLEDGRTFPASAVASNADVINTYQKLLGHHPAGAQRANKLKRKRMSN 308

Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
            SLFV+YFGL++Q+T LAHHT+ F   YK  I  IF  +   D+ S+YLH+P VTD SLAP
Sbjct: 309  SLFVLYFGLNKQHTQLAHHTVCFGPRYKALIHEIFNSDRLADDFSLYLHAPCVTDPSLAP 368

Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
             GC ++Y L PVP+L  + I+W+ E  +L+  +F YLEQ  +P LR +L+T RIFTP DF
Sbjct: 369  PGCGSYYVLAPVPHLGRADIDWAVEGPRLRERIFDYLEQRYMPGLRDQLVTHRIFTPFDF 428

Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKS 1192
            +D L +++GSAFS  PLLTQSAWFRPHNRD +  NLY VGAGTHPGA    +   +K+
Sbjct: 429  RDQLDAHVGSAFSIEPLLTQSAWFRPHNRDAHFANLYLVGAGTHPGAGVPGVIGSAKA 486

Source: Enterobacter pulveris

Species: Cronobacter pulveris

Genus: Cronobacter

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|254262245|emb|CAZ90572.1| Phytoene dehydrogenase crtI [Enterobacter helveticus]

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 266/478 (55%), Positives = 359/478 (75%)

Query: 715  IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIK 774
            I  GAG GG+ALAIRLQ AG+  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+
Sbjct: 9    IVIGAGFGGLALAIRLQAAGVPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIE 68

Query: 775  LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
             LF L+   M +YV LLP+ PFYRL W   K L+Y+++ + LE QIA+FN  D++GYR F
Sbjct: 69   ELFTLAGKNMADYVELLPVTPFYRLCWESGKVLDYDNDQQKLEAQIARFNPKDVEGYRQF 128

Query: 835  LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
            L YS+ VFKEGYL   +  FL+  DM+   P+L +++AW+SVY +VS+FI++DYL+QAFS
Sbjct: 129  LAYSQAVFKEGYLKLGTVPFLSFRDMMKAGPQLARLQAWRSVYGVVSKFIEDDYLRQAFS 188

Query: 895  FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
            F+SL +GGNPF+TSSIYTLIHALE EWG+WF +GG GAL++ L++LF++LGG + LN++V
Sbjct: 189  FHSLLVGGNPFATSSIYTLIHALEREWGVWFARGGTGALVQGLVRLFEDLGGKIELNARV 248

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
              I     +V  V L++G+ F A  + SNAD++NTY+ LLG +  G ++   L +K+MSN
Sbjct: 249  KRIEAAGARVTGVTLEDGRTFPACAVASNADVVNTYQKLLGHHPAGAQRSGKLKRKRMSN 308

Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
            SLFV+YFGL++Q+T LAHHT+ F   Y++ I +IF  +   D+ S+YLH+P VTD SLAP
Sbjct: 309  SLFVLYFGLNKQHTQLAHHTVCFGPRYRELIHDIFNGDQLADDFSLYLHAPCVTDPSLAP 368

Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
             GC ++Y L PVP+L  + I+W+ E  +L++ +F YLEQ  +P LR +L+TQRIFTP DF
Sbjct: 369  PGCGSYYVLAPVPHLGRADIDWTVEGPRLRDRIFDYLEQRYMPGLRDQLVTQRIFTPFDF 428

Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKS 1192
            +D L ++LGSAFS  PLLTQSAWFRPHNRD++  NLY VGAGTHPGA    +   +K+
Sbjct: 429  RDQLDAHLGSAFSIEPLLTQSAWFRPHNRDEHFANLYLVGAGTHPGAGVPGVIGSAKA 486

Source: Enterobacter helveticus

Species: Cronobacter helveticus

Genus: Cronobacter

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|72536062|gb|AAZ73130.1| phytoene desaturase [Enterobacteriaceae bacterium DC260]

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 256/475 (53%), Positives = 360/475 (75%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI T +LEQRDKPGGRAYV++  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPTTLLEQRDKPGGRAYVFEDSGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+   + +YV L+P+ PFYRL W   K L+Y++N   LE+QIA FN  D++GYR FL Y
Sbjct: 68   TLAGKSLSDYVELMPVTPFYRLCWEDGKQLDYDNNQPLLEQQIATFNPQDVEGYRQFLAY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S++VF+EGYL   +  FL + DML + P+L +++AW+SVYS+V++FI++D+L+QAFSF+S
Sbjct: 128  SREVFREGYLKLGTVPFLQVRDMLRVAPQLGRLQAWRSVYSMVAKFIQDDHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ + +LF++LGG L+LN++V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMARLFEDLGGELLLNAEVSQL 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
              + N+++ V L+ G+ FDA  + SNAD+++TY  LL  +    K+  +L +K+MSNSLF
Sbjct: 248  ETSGNRISGVQLEGGRRFDAAAVASNADVVHTYDKLLRHHPLAMKRATSLKRKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL++ +  LAHHT+ F   Y++ I+ IF  +   D+ S+YLH+P  +D SLAP GC
Sbjct: 308  VLYFGLNQPHEQLAHHTVCFGPRYRELIDEIFNSSQLADDFSLYLHAPCSSDPSLAPPGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             +FY L PVP+L  + I+W +E  +L++ +F YLEQ+ +P LR++L+T R+FTP DF+D 
Sbjct: 368  GSFYVLAPVPHLGTADIDWQQEGPRLRDRIFAYLEQHYMPGLRQQLVTHRMFTPFDFRDT 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKS 1192
            L ++ GSAFS  P+LTQSAWFRPHNRD +++NLY VGAGTHPGA    +   +K+
Sbjct: 428  LHAHHGSAFSLEPILTQSAWFRPHNRDADISNLYLVGAGTHPGAGVPGVIGSAKA 482

Source: Enterobacteriaceae bacterium DC260

Species: Enterobacteriaceae bacterium DC260

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|378769593|ref|YP_005198070.1| phytoene dehydrogenase CrtI [Pantoea ananatis LMG 5342] gi|386076655|ref|YP_005990738.1| phytoene dehydrogenase CrtI [Pantoea ananatis PA13] gi|354685523|gb|AER34890.1| phytoene dehydrogenase CrtI [Pantoea ananatis PA13] gi|365189084|emb|CCF12033.1| phytoene dehydrogenase CrtI [Pantoea ananatis LMG 5342]

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 266/484 (54%), Positives = 360/484 (74%), Gaps = 1/484 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  +++ YV LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+Y
Sbjct: 68   ALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VFKEGYL   +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+S
Sbjct: 128  SRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG L+LN++V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGELVLNARVSHM 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
                NK+  VHL++G+ F    + SNAD+++TYR+LL Q+    K+   L  K+MSNSLF
Sbjct: 248  ETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL+  +  LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC
Sbjct: 308  VLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             ++Y L PVP+L  ++++W+ E  KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D 
Sbjct: 368  GSYYVLAPVPHLGTANLDWTVEGPKLRDRIFEYLEQHYMPGLRSQLVTHRMFTPFDFRDQ 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197
            L +Y GSAFS  P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ +
Sbjct: 428  LNAYQGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGL 486

Query: 1198 KLFD 1201
             L D
Sbjct: 487  MLED 490

Source: Pantoea ananatis LMG 5342

Species: Pantoea ananatis

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|117515|sp|P21685.1|CRTI_PANAN RecName: Full=Phytoene desaturase (lycopene-forming); AltName: Full=4-step phytoene desaturase; AltName: Full=Phytoene dehydrogenase gi|216685|dbj|BAA14127.1| crtI [Pantoea ananatis] gi|325559608|gb|ADZ30890.1| phytoene dehydrogenase [MoClo level 2 destination vector pL2-1] gi|325559619|gb|ADZ30898.1| phytoene dehydrogenase [MoClo end-linker vector pELR-1]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 265/484 (54%), Positives = 360/484 (74%), Gaps = 1/484 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  +++ YV LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+Y
Sbjct: 68   ALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VFKEGYL   +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+S
Sbjct: 128  SRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG ++LN++V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHM 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
                NK+  VHL++G+ F    + SNAD+++TYR+LL Q+    K+   L  K+MSNSLF
Sbjct: 248  ETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL+  +  LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC
Sbjct: 308  VLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             ++Y L PVP+L  ++++W+ E  KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D 
Sbjct: 368  GSYYVLAPVPHLGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQ 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197
            L +Y GSAFS  P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ +
Sbjct: 428  LNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGL 486

Query: 1198 KLFD 1201
             L D
Sbjct: 487  MLED 490

Source: Pantoea ananatis

Species: Pantoea ananatis

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|386018482|ref|YP_005941088.1| phytoene dehydrogenase CrtI [Pantoea ananatis AJ13355] gi|327396569|dbj|BAK13990.1| phytoene dehydrogenase CrtI [Pantoea ananatis AJ13355]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 265/484 (54%), Positives = 360/484 (74%), Gaps = 1/484 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  +++ YV LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+Y
Sbjct: 68   ALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQARLEAQIQQFNPRDVEGYRQFLDY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VFKEGYL   +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+S
Sbjct: 128  SRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG ++LN++V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHM 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
                NK+  VHL++G+ F    + SNAD+++TYR+LL Q+    K+   L  K+MSNSLF
Sbjct: 248  ETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            V+YFGL+  +  LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC
Sbjct: 308  VLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             ++Y L PVP+L  ++++W+ E  KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D 
Sbjct: 368  GSYYVLAPVPHLGTANLDWTVEGPKLRDRIFEYLEQHYMPGLRSQLVTHRMFTPFDFRDQ 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197
            L +Y GSAFS  P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ +
Sbjct: 428  LNAYQGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGL 486

Query: 1198 KLFD 1201
             L D
Sbjct: 487  MLED 490

Source: Pantoea ananatis AJ13355

Species: Pantoea ananatis

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|390434747|ref|ZP_10223285.1| phytoene dehydrogenase [Pantoea agglomerans IG1] gi|429485115|gb|AFZ89042.1| CrtI [Pantoea agglomerans]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 263/484 (54%), Positives = 358/484 (73%), Gaps = 1/484 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRLQ +G+ T +LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF
Sbjct: 8    GAGFGGLALAIRLQASGVPTRLLEQRDKPGGRAYVYQDQGFTFDAGPTVITDPSAIEELF 67

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+  ++ +YV L+P+KPFYRL W   K  +Y+++   LE QIA FN  D++GYR FL Y
Sbjct: 68   TLAGKKLSDYVELMPVKPFYRLCWESGKVFSYDNDQPALEAQIAAFNPRDVEGYRRFLAY 127

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            S+ VF EGYL   +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+S
Sbjct: 128  SRAVFAEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187

Query: 898  LFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISI 957
            L +GGNPF+TSSIYTLIHALE EWG+WFP+GG GAL++ ++KLF++LGG + LN+ V  +
Sbjct: 188  LLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMVKLFEDLGGEVELNASVARL 247

Query: 958  YVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017
                N++  VHLK+G++F    + SNAD+++TYR LL Q+   + +  +L  K+MSNSLF
Sbjct: 248  ETQENRITAVHLKDGRVFPTRAVASNADVVHTYRELLSQHPASQAQGRSLQNKRMSNSLF 307

Query: 1018 VIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGC 1077
            VIYFGL+  +  LAHHT+ F   Y++ I+ IF K+   ++ S+YLH+P VTD SLAP GC
Sbjct: 308  VIYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNKDGLAEDFSLYLHAPCVTDPSLAPEGC 367

Query: 1078 STFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDV 1137
             ++Y L PVP+L  + I+W+ E  +L++ +F YLEQ+ +P LR +L+T RIFTP DF+D 
Sbjct: 368  GSYYVLAPVPHLGTADIDWAVEGPRLRDRIFDYLEQHYMPGLRSQLVTHRIFTPFDFRDE 427

Query: 1138 LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197
            L +Y GSAFS  P+LTQSAWFRPHNRDKN+ NLY VGAGTHPGA    +  GS   ++ +
Sbjct: 428  LNAYQGSAFSVEPILTQSAWFRPHNRDKNINNLYLVGAGTHPGAGIPGV-IGSAKATAGL 486

Query: 1198 KLFD 1201
             L D
Sbjct: 487  MLED 490

Source: Pantoea agglomerans IG1

Species: Pantoea agglomerans

Genus: Pantoea

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1428
UNIPROTKB|P21685	492	crtI "Phytoene desaturase (lyc	0.330	0.959	0.520	2.4e-138
UNIPROTKB|P17054	524	crtI "Phytoene desaturase (neu	0.321	0.875	0.343	1.4e-70
UNIPROTKB|P54979	517	carA2 "zeta-carotene-forming p	0.313	0.864	0.274	6.1e-51
UNIPROTKB|Q02861	529	carC "All-trans-zeta-carotene	0.313	0.844	0.252	1.7e-42
UNIPROTKB|Q67GI0	582	carB "Phytoene dehydrogenase"	0.324	0.795	0.232	2.1e-39
UNIPROTKB|Q8X0Z0	570	carB "Phytoene dehydrogenase"	0.25	0.626	0.283	4.8e-38
UNIPROTKB|Q6ED64	421	Q6ED64 "Phytoene synthase 1" [	0.164	0.558	0.270	1e-12
TAIR|locus:2167225	437	PSY "PHYTOENE SYNTHASE" [Arabi	0.149	0.487	0.278	1.1e-11
UNIPROTKB|P37295	602	al-2 "Bifunctional lycopene cy	0.077	0.182	0.322	2.5e-11
UNIPROTKB|Q67GH9	608	carRA "Bifunctional lycopene c	0.129	0.304	0.287	5.8e-10

UNIPROTKB|P21685 crtI "Phytoene desaturase (lycopene-forming)" [Pantoea ananatis (taxid:553)]

 Score = 1314 (467.6 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
 Identities = 246/473 (52%), Positives = 330/473 (69%)

Query:   729 RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYV 788
             RLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF L+  +++ YV
Sbjct:    19 RLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELFALAGKQLKEYV 78

Query:   789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848
              LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+YS+ VFKEGYL 
Sbjct:    79 ELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLK 138

Query:   849 FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTS 908
               +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+SL +GGNPF+TS
Sbjct:   139 LGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATS 198

Query:   909 SIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYXXXXXXXXXX 968
             SIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG ++LN++V  +           
Sbjct:   199 SIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVH 258

Query:   969 XXXGQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVIYFGLSEQYT 1028
                G+ F    + SNAD+++TYR+LL Q+              MSNSLFV+YFGL+  + 
Sbjct:   259 LEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHD 318

Query:  1029 HLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPN 1088
              LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC ++Y L PVP+
Sbjct:   319 QLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPH 378

Query:  1089 LXXXXXXXXXXXXKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSF 1148
             L            KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D L +Y GSAFS 
Sbjct:   379 LGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSV 438

Query:  1149 APLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFD 1201
              P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ + L D
Sbjct:   439 EPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGLMLED 490

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|P17054 crtI "Phytoene desaturase (neurosporene-forming)" [Rhodobacter capsulatus SB 1003 (taxid:272942)]

 Score = 724 (259.9 bits), Expect = 1.4e-70, P = 1.4e-70
 Identities = 161/469 (34%), Positives = 260/469 (55%)

Query:   729 RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF-DLSKNRMENY 787
             RL   G    ++++ D+PGGR     + G  FD GPT++T P+ ++ L+ D  ++  +  
Sbjct:    26 RLGAKGYKVTVVDRLDRPGGRGSSITKGGHRFDLGPTIVTVPDRLRELWADCGRD-FDKD 84

Query:   788 VNLLPIKPFYRL-YWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGY 846
             V+L+P++PFY + +   EK+  Y D+ K ++ ++A+ +  D++G+R F+  +K  ++ GY
Sbjct:    85 VSLVPMEPFYTIDFPDGEKYTAYGDDAK-VKAEVARISPGDVEGFRHFMWDAKARYEFGY 143

Query:   847 LSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFS 906
              +   K    + D++ +LP    ++A +SVY    + +K+D+L+ A SF+ LFIGG+PF 
Sbjct:   144 ENLGRKPMSKLWDLIKVLPTFGWLRADRSVYGHAKKMVKDDHLRFALSFHPLFIGGDPFH 203

Query:   907 TSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYXXXXXXXX 966
              +S+Y L+  LE ++G+ +  GGV A+  A+ K+  + GG + LN++V  I         
Sbjct:   204 VTSMYILVSQLEKKFGVHYAIGGVQAIADAMAKVITDQGGEMRLNTEVDEILVSRDGKAT 263

Query:   967 XXXXX-GQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVIYFGL-- 1023
                   G    A ++VSNAD  +TY+ LL                  S  LFV YFG   
Sbjct:   264 GIRLMDGTELPAQVVVSNADAGHTYKRLLRNRDRWRWTDEKLDKKRWSMGLFVWYFGTKG 323

Query:  1024 -SEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYA 1082
              ++ +  + HHT+     YK+ +++IF K    +++S+Y+H PSVTD + AP G  TFY 
Sbjct:   324 TAKMWKDVGHHTVVVGPRYKEHVQDIFIKGELAEDMSLYVHRPSVTDPTAAPKGDDTFYV 383

Query:  1083 LIPVPNLXXXXXXX-XXXXXKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSY 1141
             L PVPNL             K K  V   +E+  +P + +K+  + +FTP  F+D   S 
Sbjct:   384 LSPVPNLGFDNGVDWSVEAEKYKAKVLKVIEERLLPGVAEKITEEVVFTPETFRDRYLSP 443

Query:  1142 LGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAA-NKIIKAG 1189
             LG+ FS  P + QSAWFRPHN  + +  LY VGAGTHPGA    +I +G
Sbjct:   444 LGAGFSLEPRILQSAWFRPHNASEEVDGLYLVGAGTHPGAGVPSVIGSG 492

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|P54979 carA2 "zeta-carotene-forming phytoene desaturase" [Myxococcus xanthus (taxid:34)]

 Score = 541 (195.5 bits), Expect = 6.1e-51, P = 6.1e-51
 Identities = 125/455 (27%), Positives = 222/455 (48%)

Query:   729 RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYV 788
             RL   G    + E+   PGGR    + DGF +D GPT++  P   +  F     R+E+Y+
Sbjct:    25 RLAHQGFDVQVFEKTQGPGGRCNRLQVDGFTWDLGPTIVLMPEVFEETFRAVGRRIEDYL 84

Query:   789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848
              LL   P YR+++     + +   +  + +++ +        Y  FL   +  ++     
Sbjct:    85 TLLRCDPNYRVHFRDRSDVTFTSELCAMGRELERVEPGSYARYLAFLAQGRVQYRTSLDH 144

Query:   849 FASKSFLTINDMLF--ILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFS 906
                +++  + D L   +L ++ +++A + +Y+ VS+F +++ L+ A +F ++++G +P++
Sbjct:   145 LVGRNYAGLRDYLSPRVLARIFQVRAHRRMYADVSRFFQDERLRAAMTFQTMYLGVSPYA 204

Query:   907 TSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYXXXXXXXX 966
             + ++Y L+   E   GIWFPKGG+ A+ +AL +L +  G      + V  I         
Sbjct:   205 SPAVYGLLPFTELGVGIWFPKGGLYAIPQALERLAREEGVRFHYGAPVERILTDGGRTRG 264

Query:   967 XXXXXGQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVIYFGLSEQ 1026
                  G++ +AD ++ NAD+   Y  LL   A              ++S +++Y G+  +
Sbjct:   265 VRLEGGEVVEADAVLCNADLPYAYEKLLDPKA---TTLKRKEKLRYTSSGYMLYLGMKRR 321

Query:  1027 YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086
             Y  L HH + F  +YK S ++IF      D  S Y+++P+ TD SLAP G    Y L+PV
Sbjct:   322 YPELLHHNVVFGRDYKGSFDDIFEFRVPEDP-SFYVNAPTRTDASLAPEGKDALYVLVPV 380

Query:  1087 PNLXXXXXXXXXXXXKLKNIVFMYLEQYCIPNLRKKL-ITQRIFTPNDFKDVLGSYLGSA 1145
             P+             K++   F  + +   P+L   + + +R  TP+D+        GS 
Sbjct:   381 PH-QHPDLDWKVEGPKVRAKFFARMAELGFPSLESDIEVERRSSTPDDWAGTFNLARGSG 439

Query:  1146 FSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG 1180
             F  +   TQ   FRP N+D  + NL+FVGA T PG
Sbjct:   440 FGLSQNFTQIGPFRPSNQDARVKNLFFVGASTQPG 474

GO:0016117 "carotenoid biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|Q02861 carC "All-trans-zeta-carotene desaturase" [Myxococcus xanthus (taxid:34)]

 Score = 462 (167.7 bits), Expect = 1.7e-42, P = 1.7e-42
 Identities = 115/455 (25%), Positives = 215/455 (47%)

Query:   734 GISTIILEQRDKPGGR--AYVYKQDG-FIFDAGPTVITDPNSIKLLFDLSKNRMENYVNL 790
             G    ++E+   PGGR         G +  D GP+++  P  ++ +F  +  R+E+YV L
Sbjct:    31 GFRVTVVEKDAVPGGRMKGLTLGASGEYAVDTGPSILQLPGVLEQIFRRAARRLEDYVKL 90

Query:   791 LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFA 850
             LP+    R+++     L+   ++  +E ++AKF        R ++   ++ +   Y  F 
Sbjct:    91 LPLDVNTRVHFWDGTHLDTTRHLDRMEAELAKFGPRQASALRQWMEDGREKYGIAYQKFI 150

Query:   851 SKSFLTINDML-FILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSS 909
               S   +     + L   ++ K W+++Y  +  F  +D +  A ++ S ++G +P + SS
Sbjct:   151 CTSADNLGYYAPWRLAPTLRFKPWQTLYRQLDGFFHDDRVTYALAYPSKYLGLHPTTCSS 210

Query:   910 IYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYXXXXXXXXXXX 969
             ++++I  LE  +G+W  +GG   L + +++  ++LG    + + V  +            
Sbjct:   211 VFSVIPFLELAFGVWHVEGGFRELSRGMMRCARDLGATFRMGTPVEKVRVDAGRAVGVKL 270

Query:   970 XXGQIFDADIIVSNADIINTYRNLLGQYAF-GXXXXXXXXXXXM-SNSLFVIYFGLSEQY 1027
               G++ DAD +V NAD+    R+L+   A  G             S S F+ Y+GL   Y
Sbjct:   271 VGGEVLDADAVVVNADLAYAARSLIPAEAREGSRLTDAALERAKYSCSTFMAYYGLDTVY 330

Query:  1028 THLAHHTIFFPSNYKKSIENIF-GKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086
               L HH I+   + +++  +    ++   ++   Y+ +P VTD S AP G ST Y L+P 
Sbjct:   331 ADLPHHLIYLSESARRTDRDALEDRHVDLEDPPFYVCNPGVTDPSGAPAGHSTLYVLVPT 390

Query:  1087 PNLXXXXXXXXXXXXKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAF 1146
             PN               + I  M LE+  +  +R+ +  +R FT   ++D    + G+ F
Sbjct:   391 PNTGRPVDWVKTEQALRERIPAM-LEKVGLKGVREHIREERYFTAETWRDDFNVFRGAVF 449

Query:  1147 SFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA 1181
             + +    Q    RP  +++++  LYFVG GTHPG+
Sbjct:   450 NLSHTWLQLGPLRPKVKNRDIEGLYFVGGGTHPGS 484

GO:0016117 "carotenoid biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|Q67GI0 carB "Phytoene dehydrogenase" [Blakeslea trispora (taxid:4850)]

 Score = 433 (157.5 bits), Expect = 2.1e-39, P = 2.1e-39
 Identities = 113/486 (23%), Positives = 224/486 (46%)

Query:   729 RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF-DLSKNRMENY 787
             RL   G    ++E+ D  GGR      DG  FD GP++   P   +  F DL + R+ ++
Sbjct:    23 RLAREGFRVTVVEKNDFSGGRCSFIHHDGHRFDQGPSLYLMPKLFEDAFADLDE-RIGDH 81

Query:   788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKV---FKE 844
             ++LL     Y++++     +    ++  ++ ++ +  +    G+  FL++ K+    +++
Sbjct:    82 LDLLRCDNNYKVHFDDGDAVQLSSDLTKMKGELDR--IEGPLGFGRFLDFMKETHVHYEQ 139

Query:   845 GYLSFASKSFLTINDMLFI--LPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGG 902
             G      ++F TI D++ +  +P++ ++  +  +Y   S++ +   ++ AF+F ++++G 
Sbjct:   140 GTFIAIKRNFETIWDLIRLQYVPEIFRLHLFGKIYDRASKYFQTKKMRMAFTFQTMYMGM 199

Query:   903 NPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLF-QNLGGNLILNSQV--ISIYX 959
             +P+   ++Y+L+   E+  GIW+P+GG   +++ L  +  +  G      S V  I+   
Sbjct:   200 SPYDAPAVYSLLQYTEFAEGIWYPRGGFNMVVQKLESIASKKYGAEFRYQSPVAKINTVD 259

Query:   960 XXXXXXXXXXXXGQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVI 1019
                         G++ +AD +V NAD++  Y +LL    +            +++S    
Sbjct:   260 KDKRVTGVTLESGEVIEADAVVCNADLVYAYHHLLPPCNW---TKKTLASKKLTSSSISF 316

Query:  1020 YFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCST 1079
             Y+ +S +   L  H IF    YK+S + IF         S Y++ PS  D S AP    +
Sbjct:   317 YWSMSTKVPQLDVHNIFLAEAYKESFDEIFNDFGLPSEASFYVNVPSRIDESAAPPNKDS 376

Query:  1080 FYALIPVPNLXXXXXXXXXXXX-----KLKNIVFMYLEQYC-IPNLRKKLITQRIFTPND 1133
                L+P+ ++                 + + +V   +E+   + N    +  + +  P+ 
Sbjct:   377 IIVLVPIGHMKSKTGNSAEENYPELVNRARKMVLEVIERRLGVNNFANLIEHEEVNDPSV 436

Query:  1134 FKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKN--LTNLYFVGAGTHPGAANKIIKAGSK 1191
             ++     + GS    +  + Q  WFRP  +D      NL+FVGA THPG    I+ AGSK
Sbjct:   437 WQSKFNLWRGSILGLSHDVFQVLWFRPSTKDSTNRYDNLFFVGASTHPGTGVPIVLAGSK 496

Query:  1192 SFSSAI 1197
               S  +
Sbjct:   497 LTSDQV 502

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

UNIPROTKB|Q8X0Z0 carB "Phytoene dehydrogenase" [Fusarium fujikuroi (taxid:5127)]

 Score = 387 (141.3 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
 Identities = 104/367 (28%), Positives = 176/367 (47%)

Query:   729 RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF-DLSKNRMENY 787
             RL  AG    ILE+ D  GGR  +   DG  FD GP+++  P     +F DL  +     
Sbjct:    23 RLAKAGFKVTILEKNDFTGGRCSLIHNDGHRFDQGPSLLLLPRFFHEIFQDLGTSLTAEG 82

Query:   788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQI-AKFNLNDIKGYRLFLNYSKKVFKEGY 846
             V LL  +P Y +++G         ++  ++K I A   ++  + Y  FL  S + ++   
Sbjct:    83 VELLKCEPNYNIWFGDGSSFEMSTDLTKMKKAIEAVEGIDGFERYLGFLQESHRHYEVSV 142

Query:   847 LSFASKSFLTINDMLF--ILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNP 904
              S   ++F +I  +    +L  L  I   +S+++  S++   + L++ F+F S+++G +P
Sbjct:   143 ESVLRRNFPSILSLARPEVLFNLFNIHPLESIWTRASKYFWTERLRRVFTFGSMYMGMSP 202

Query:   905 FSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV--ISIYXXXX 962
             F     Y+L+   E   GI +P+GG   +++AL+ + Q LG    L++ V  ISI     
Sbjct:   203 FDAPGTYSLLQYTELAEGILYPRGGFHKVVEALVNVGQRLGVEYRLSTGVKSISIDQATG 262

Query:   963 XXXXXXXXXGQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVIYFG 1022
                      G    +DI++SNAD++ TY NLL + ++             S S    Y+ 
Sbjct:   263 KANGVVLSDGTHLPSDIVISNADLVYTYNNLLPKTSYADSLSKRET----SCSSISFYWS 318

Query:  1023 LSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYA 1082
              S+    L  H IF    Y++S ++IF ++      S Y++ PS  D S AP G  +   
Sbjct:   319 ASKIVPELNAHNIFLADEYQESFDSIFKEHLIPSEPSFYVNVPSRIDPSAAPEGKDSIVV 378

Query:  1083 LIPVPNL 1089
             L+PV +L
Sbjct:   379 LVPVGHL 385

GO:0016120 "carotene biosynthetic process" evidence=IMP

GO:0016166 "phytoene dehydrogenase activity" evidence=IMP

UNIPROTKB|Q6ED64 Q6ED64 "Phytoene synthase 1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 203 (76.5 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 68/251 (27%), Positives = 113/251 (45%)

Query:  1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
             +I +  +K+F     L     R  +  +Y WCR  D+++D    G  +  +  +   + +
Sbjct:   135 EICEEYAKTFYLGTMLMTEDRRRAIWAIYVWCRRTDELVD----GPNASHITPSALDRWE 190

Query:  1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
              ++  + T R    + M + A   L   IS     +    + ++G   D+ +  Y   DE
Sbjct:   191 KRLDDLFTGRP---YDMLDAA---LSDTISKSPIDIQPFRDMIEGMRSDLRKTRYKNFDE 244

Query:  1304 TLGYCYHVAGTIGLIIAHLIGV--KEKDTL----NCARNLGIAFQLTNISRDVIDDFYVG 1357
                YCY+VAGT+GL+   ++G+  + K T     + A  LGIA QLTNI RDV +D   G
Sbjct:   245 LYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRG 304

Query:  1358 RCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLA 1417
             R YLP D L   GL+  +        K    + R +  A  ++  +   +  L   S   
Sbjct:   305 RIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQASRWP 364

Query:  1418 IVTSWSIYREI 1428
             +  S  +YR+I
Sbjct:   365 VWASLLLYRQI 375

GO:0009536 "plastid" evidence=IC

TAIR|locus:2167225 PSY "PHYTOENE SYNTHASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 64/230 (27%), Positives = 104/230 (45%)

Query:  1206 YKV-LMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPA 1264
             YK  ++   WCR  D+++D    G  +  +      + + ++  +   R    F M + A
Sbjct:   173 YKQSIVALVWCRRTDELVD----GPNASHITPMALDRWEARLEDLFRGRP---FDMLDAA 225

Query:  1265 FLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIG 1324
                L   ++ +   +    + ++G  MD+ +  Y   D+   YCY+VAGT+GL+   ++G
Sbjct:   226 ---LADTVARYPVDIQPFRDMIEGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMG 282

Query:  1325 V--KEKDTL----NCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVL 1378
             +  K K T     N A  LGIA QLTNI RDV +D   GR YLP D L   GL+  +   
Sbjct:   283 IDPKSKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFA 342

Query:  1379 AENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI 1428
              +   K    +   L  A  ++  +   +  L   S   +  S  +YR I
Sbjct:   343 GKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRI 392

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA;IMP

GO:0016767 "geranylgeranyl-diphosphate geranylgeranyltransferase activity" evidence=ISS;TAS

GO:0046905 "phytoene synthase activity" evidence=TAS

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0010287 "plastoglobule" evidence=IDA

UNIPROTKB|P37295 al-2 "Bifunctional lycopene cyclase/phytoene synthase" [Neurospora crassa OR74A (taxid:367110)]

 Score = 143 (55.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 39/121 (32%), Positives = 64/121 (52%)

Query:  1302 DETL-GYCYHVAGTIG-----LIIAHLI----GVKEKDTLNCARNLGIAFQLTNISRDVI 1351
             D+ L  Y  +VAGT+G     LII H +      ++++    A  +GIA Q  NI+RD++
Sbjct:   427 DKDLENYAIYVAGTVGELCIALIIYHCLPDMSDTQKRELETAACRMGIALQYVNIARDIV 486

Query:  1352 DDFYVGRCYLPLDWLRNEGL-NKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTL 1410
              D  +GR YLP  WL+ EGL +K      E  + + ++  R+L+ A   Y  +  ++  +
Sbjct:   487 VDARIGRVYLPTTWLKKEGLTHKMVLENPEGPEVIERMRRRLLENAFELYGGARPEMQRI 546

Query:  1411 P 1411
             P
Sbjct:   547 P 547

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016767 "geranylgeranyl-diphosphate geranylgeranyltransferase activity" evidence=IDA

GO:0045436 "lycopene beta cyclase activity" evidence=IDA

GO:0046905 "phytoene synthase activity" evidence=IDA

UNIPROTKB|Q67GH9 carRA "Bifunctional lycopene cyclase/phytoene synthase" [Blakeslea trispora (taxid:4850)]

 Score = 192 (72.6 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query:  1185 IIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKL 1244
             I++  SKSF +A  +F   +R  + +LYA+CR  DD+ D++    + +  + +++ +   
Sbjct:   295 ILRKASKSFYTASAVFPSYVRQDLGVLYAFCRATDDLCDDESKSVQERRDQLDLTRQFVR 354

Query:  1245 KILRIKTKRAC-IGFKMKE---PA--FLALQKIISI-HSFPVHLLFEHLDGFEMDVMERT 1297
              +   KT     I +++ +   PA    A +    + H   V  + E LDG++ D+  R 
Sbjct:   355 DLFSQKTSAPIVIDWELYQNQLPASCISAFRAFTRLRHVLEVDPVEELLDGYKWDLERRP 414

Query:  1298 YITLDETLGYCYHVAGTIGLIIAHLI---GVKEKDT--LNCARNLGIAFQLTNISRDVID 1352
              +   +   Y   VA ++G +   +I     KE D   ++ AR +G+  Q  NI+RD++ 
Sbjct:   415 ILDEQDLEAYSACVASSVGEMCTRVILAQDQKENDAWIIDRAREMGLVLQYVNIARDIVT 474

Query:  1353 DFY-VGRCYLPLDWLRNE 1369
             D   +GRCYLP  WLR E
Sbjct:   475 DSETLGRCYLPQQWLRKE 492

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016767 "geranylgeranyl-diphosphate geranylgeranyltransferase activity" evidence=IDA

GO:0045436 "lycopene beta cyclase activity" evidence=IDA

GO:0046905 "phytoene synthase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21685	CRTI_PANAN	1, ., 1, 4, ., 9, 9, ., -	0.5475	0.3382	0.9817	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1.32	0.737
3rd Layer	2.5.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1428
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.0
TIGR01789	370	TIGR01789, lycopene_cycl, lycopene cyclase	2e-91
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-90
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	2e-78
TIGR01789	370	TIGR01789, lycopene_cycl, lycopene cyclase	2e-76
cd00683	265	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphat	3e-61
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	2e-60
pfam00494	262	pfam00494, SQS_PSY, Squalene/phytoene synthase	7e-55
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	1e-50
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	1e-40
TIGR03465	266	TIGR03465, HpnD, squalene synthase HpnD	2e-33
COG1562	288	COG1562, ERG9, Phytoene/squalene synthetase [Lipid	6e-32
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	3e-25
PLN02632	334	PLN02632, PLN02632, phytoene synthase	2e-22
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	3e-22
cd00867	236	cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S	5e-22
cd00385	243	cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth	1e-18
TIGR03464	266	TIGR03464, HpnC, squalene synthase HpnC	2e-18
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	5e-15
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	5e-11
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	1e-09
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	6e-07
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	1e-05
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-05
PLN02697	529	PLN02697, PLN02697, lycopene epsilon cyclase	3e-05
PLN02697	529	PLN02697, PLN02697, lycopene epsilon cyclase	3e-05
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	4e-05
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	7e-05
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	7e-05
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	7e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	2e-04
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	3e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	4e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-04
PLN02463	447	PLN02463, PLN02463, lycopene beta cyclase	6e-04
PLN02463	447	PLN02463, PLN02463, lycopene beta cyclase	6e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.001
TIGR01559	337	TIGR01559, squal_synth, farnesyl-diphosphate farne	0.001
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	0.003

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score =  622 bits (1606), Expect = 0.0
 Identities = 235/468 (50%), Positives = 321/468 (68%), Gaps = 4/468 (0%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG GG+ALAIRL  AGI   ++EQRDKPGGRA V + DGF FD GPTVIT P +++ LF
Sbjct: 5    GAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELF 64

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L+   + +YV L+P+ PFYRL W     L+ +++ ++LE QIA+FN  D+ GYR FL+Y
Sbjct: 65   ALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDY 124

Query: 838  SKKVFKEGYLSFASKSFLTINDML-FILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFN 896
            +++V++EGY       FL+  D+L   LP+L+ + AW+S+YS V++F  ++ L+QAFSF+
Sbjct: 125  AERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFH 184

Query: 897  SLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVIS 956
            +LF+GGNPF T SIY LI ALE EWG+WFP+GG GAL+ A+ KL ++LGG L LN++VI 
Sbjct: 185  ALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIR 244

Query: 957  IYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016
            I     +   VHL +G+  DAD +VSNAD+ +TYR LL  +   +     L +K+ S SL
Sbjct: 245  IETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSL 304

Query: 1017 FVIYFGLS---EQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA 1073
            FV+YFGL      +  LAHHT+ F   YK+  + IF K    ++ S+YLH P+VTD SLA
Sbjct: 305  FVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLA 364

Query: 1074 PTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPND 1133
            P GC   Y L PVP+L  + ++WS E  + ++ +  YLE+  IP LR +++ +R FTP D
Sbjct: 365  PPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPAD 424

Query: 1134 FKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA 1181
            F+D   ++LGSAFS    LTQSAWFRPHNRD+ + NLY VGAGTHPGA
Sbjct: 425  FRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGA 472

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase

 Score =  300 bits (770), Expect = 2e-91
 Identities = 120/361 (33%), Positives = 192/361 (53%), Gaps = 15/361 (4%)

Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQNDISSSQYMLIKPLITYSWPS 423
           GL   +IA  L++  P   + ++E   ++  NH WSF  +D+S +Q+  +  L+   WP 
Sbjct: 8   GLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPG 67

Query: 424 YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKII 483
           Y+V+FPK+ RK+ + Y S+ S   +  L++A      +   +    +    + +     I
Sbjct: 68  YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFP--EGVILGRKAVGLDADGVDLAPGTRI 125

Query: 484 NANCIIDGRGLK-NSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTL 542
           NA  +ID RG K ++   G +Q+FLG++  L  PHGL+ PIIMDATV+Q    Y F+Y L
Sbjct: 126 NARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPHGLENPIIMDATVDQLAG-YRFVYVL 184

Query: 543 PLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEK- 601
           PL  + L+IEDT Y   P L  + L + I  YA  N W+     R E G +P+ L  +  
Sbjct: 185 PLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFS 244

Query: 602 --IIKFKKTICVGLRANLLHATTGYSLPIAIQLAENI-AKYSITTNQINSTVLFKLVKKF 658
               + +     GLRA L H TTGYSLP+A++ A+ + A+  +++ Q+ +      +   
Sbjct: 245 AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAF-----IDSR 299

Query: 659 IINHQKKQRFFCMLNR-LFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS 717
              H  K  ++ +LNR LFF +     + + Q FY L + +I  FYA + + FDK+R+  
Sbjct: 300 ARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLRVLW 359

Query: 718 G 718
           G
Sbjct: 360 G 360

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. Length = 370

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  301 bits (773), Expect = 3e-90
 Identities = 131/468 (27%), Positives = 221/468 (47%), Gaps = 18/468 (3%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG+ G+A A  L  AG+   +LE+ D+ GGRA  ++ DGF FD GP+    P+   L  
Sbjct: 10   GAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPLFR 69

Query: 778  DLSKNRMENY-VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLN 836
            +L    ++   ++LLP  P YR++      ++   +++   + +      D +    +L 
Sbjct: 70   EL--GNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLR 127

Query: 837  YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWK--SVYSIVSQFIKNDYLKQAFS 894
               ++++       +     +  +     +L+++  +   S          ++ L+   +
Sbjct: 128  LLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLA 187

Query: 895  FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
            +++++ G  P +  ++Y L+  L    G+++P+GG+GAL+ AL +L +  GG +   ++V
Sbjct: 188  YSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEV 247

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
              I V   K   V   +G+  +AD +VSNAD       LLG+     ++         S 
Sbjct: 248  SQILVEGGKGVGVRTSDGENIEADAVVSNAD-PALLARLLGEA----RRPRYRGSYLKSL 302

Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
            S   +Y GL      LAHHT     + ++ IE  F     R    +Y+  PS+TD SLAP
Sbjct: 303  SALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRP-PPLYVSIPSLTDPSLAP 361

Query: 1075 TG-CSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPND 1133
             G  STF  L+PVP    S  ++ E    L + +   LE+   P LR +++ + + TP D
Sbjct: 362  EGKHSTFAQLVPVP----SLGDYDELKESLADAIDA-LEEL-APGLRDRIVAREVLTPLD 415

Query: 1134 FKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA 1181
             +  LG   G  F  A  L Q   FRP  +   +  LY VGA THPG 
Sbjct: 416  LERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGG 463

Length = 487

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score =  263 bits (674), Expect = 2e-78
 Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 26/368 (7%)

Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVK---NHIWSFHQNDISSSQYMLIKPLITYSW 421
           GL   ++A  L+Q  P L VLL++         NH WS    D+       + P + +SW
Sbjct: 8   GLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGP-----LAPCVEHSW 62

Query: 422 PSYQVKFPKFNRKIFS-GYYSICSKHLNSYLIRALGINNFLFNNKTVEIITPTS----IR 476
           P Y+V+FP   RK+   GY  + S  L+  L+R    N  +  N  V  +        + 
Sbjct: 63  PGYEVRFPDGRRKLIGRGYGRVSSDRLHEELLRRCAENGVIRLNAKVASVDAEPVESLVV 122

Query: 477 INNKKIINANCIIDGRGLK-NSQFDGIYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKND 534
           + + + I A  +ID RG   +      YQ F G +  + +P H  D+P+IMDA V Q   
Sbjct: 123 LEDGRTIRARLVIDARGASPSGALTVGYQTFYGVEVEVDNPPHDPDVPVIMDARVPQPAK 182

Query: 535 EYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIP 594
            Y F+Y LPL+P  L+IEDT Y   P L  D LK+ + DYA    W++  +EREE G IP
Sbjct: 183 GYRFLYVLPLSPTRLLIEDTCYADGPALPFDALKQRLMDYARALGWRILEVEREEQGVIP 242

Query: 595 IALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKL 654
           + L  +    ++K + +G  A L+H +TGYS+P A+ LA  IA   +  + I+      L
Sbjct: 243 MTLGGDLPATWQKVLRIGAAAGLVHPSTGYSVPRALALAPAIAAI-LRLSSISLRAWITL 301

Query: 655 VKKFIINHQKKQRFFCMLNRLFFLSNSRCHLD----IMQYFYTLPDKIIRNFYANKLSFF 710
              +     +++ FF +L R+ FL+      +      Q FY LP+ +I  F A +LS  
Sbjct: 302 ---WARERWRQRGFFRLLGRMLFLA---GDPEGRRRFFQRFYRLPEWLIERFLAGRLSLA 355

Query: 711 DKIRIFSG 718
           D +RI  G
Sbjct: 356 DLLRIGLG 363

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase

 Score =  257 bits (659), Expect = 2e-76
 Identities = 113/366 (30%), Positives = 174/366 (47%), Gaps = 63/366 (17%)

Query: 10  DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPL 68
           D I++G GL   +IA  L++  P   + ++E   ++  NH WSF  + LS +Q+  +  L
Sbjct: 1   DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADL 60

Query: 69  ITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYL------------------------- 103
           +   WP Y+V+FPK+ RK+ + Y S+ S   +  L                         
Sbjct: 61  VQTDWPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLA 120

Query: 104 ----IRA----------------------LGQQWNLSSPHGLDIPIIMDATVNQKNDEYH 137
               I A                      LG++  L  PHGL+ PIIMDATV+Q    Y 
Sbjct: 121 PGTRINARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPHGLENPIIMDATVDQLAG-YR 179

Query: 138 FIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIAL 197
           F+Y LPL  + L+IEDT Y   P L  + L + I  YA  N W+     R E G +P+ L
Sbjct: 180 FVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLL 239

Query: 198 KNEK---IIKFKKTICVGLRANLLHATTGYSLPIAIQLAENI-AKYSITTNQINSTVLFK 253
             +      + +     GLRA L H TTGYSLP+A++ A+ + A+  +++ Q+ +     
Sbjct: 240 GGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAF---- 295

Query: 254 LVKKFIINHQKKQRFFCMLNR-LFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDK 312
            +      H  K  ++ +LNR LFF +     + + Q FY L + +I  FYA + + FDK
Sbjct: 296 -IDSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDK 354

Query: 313 IRIFSG 318
           +R+  G
Sbjct: 355 LRVLWG 360

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. Length = 370

>gnl|CDD|173831 cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head

 Score =  210 bits (537), Expect = 3e-61
 Identities = 83/253 (32%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 1180 GAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVS 1239
                 I++ GS+SF  A +L  P +R  V  LYA+CR  DD++D+               
Sbjct: 1    AYCRAILRKGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDP-----------AAP 49

Query: 1240 MKHKLKIL---RIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMER 1296
               KL +L   R +   A  G     P   AL  +   +  P     + L G  MD+ +R
Sbjct: 50   PDEKLALLDAFRAELDAAYWGGAPTHPVLRALADLARRYGIPREPFRDLLAGMAMDLDKR 109

Query: 1297 TYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDDFY 1355
             Y TLDE   YCY+VAG +GL++  + G       L  AR LG+A QLTNI RDV +D  
Sbjct: 110  RYETLDELDEYCYYVAGVVGLMLLRVFGASSDEAALERARALGLALQLTNILRDVGEDAR 169

Query: 1356 VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRST 1415
             GR YLP + L   G+   + +  EN      ++ R++  A  +Y  +L  L  LP RS 
Sbjct: 170  RGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229

Query: 1416 LAIVTSWSIYREI 1428
              +  +  +YR I
Sbjct: 230  FCVRAAAMLYRTI 242

These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes the condensation reaction of two molecules of geranylgeranyl diphosphate to produce phytoene, a precursor of beta-carotene. These enzymes produce the triterpene and tetraterpene precursors for many diverse sterol and carotenoid end products and are widely distributed among eukareya, bacteria, and archaea. Length = 265

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score =  212 bits (542), Expect = 2e-60
 Identities = 96/376 (25%), Positives = 159/376 (42%), Gaps = 32/376 (8%)

Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQNDISSSQYMLIKPLITYSWP- 422
           G     IA  L +  P L V L+E    +  NH +    +D+S      +   + + WP 
Sbjct: 8   GPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLG---LADCVEHVWPD 62

Query: 423 SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLF-NNKTVEIITPTS----IRI 477
            Y+ +FPK  RK+ + Y S+ S  L+  L++       L+   K +           +  
Sbjct: 63  VYEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYC 122

Query: 478 NNKKIINANCIIDGRGLK------NSQFDGIYQIFLGQQWNLSS-PHGLDIPIIMDATVN 530
              + I A  +ID RG            +  +Q+  G +  LS  PHG    +IMDA V+
Sbjct: 123 AGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGVEARLSRPPHGPSSMVIMDARVD 182

Query: 531 QKND------EYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKN 584
           Q            F+Y +PL    + IE+T    +P L  D L++ I        W++K 
Sbjct: 183 QLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQGWQIKT 242

Query: 585 IEREEIGSIPI--ALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642
           IE EE G++P+            ++    G  A ++H TTGYS+  A+  A  +A     
Sbjct: 243 IEEEEWGALPVGLPGPFLP----QRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQ 298

Query: 643 TNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHL-DIMQYFYTLPDKIIRN 701
               +S +            +++QR+F +L R+ FL+          Q F+ LP+++   
Sbjct: 299 ALCQSSELATAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWER 358

Query: 702 FYANKLSFFDKIRIFS 717
           F A +LS  D +R+  
Sbjct: 359 FLAARLSLPDLLRVLL 374

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|215948 pfam00494, SQS_PSY, Squalene/phytoene synthase

 Score =  192 bits (489), Expect = 7e-55
 Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 19/251 (7%)

Query: 1186 IKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLK 1245
            ++  S+SF  A  L  P +R  V  LYA+CR  DD++D             +  +  + +
Sbjct: 1    LRKHSRSFYLASLLLPPELRRAVAALYAFCREADDIVDE-----------VSDPLIGRAR 49

Query: 1246 ILRI-----KTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYIT 1300
            +                     P   AL   +  +  P     E +DG EMD+ +  Y T
Sbjct: 50   LDWWRDALDAAFAGRRLGPSTHPVLRALADTVRRYGLPREPFLELIDGMEMDLEKDRYET 109

Query: 1301 LDETLGYCYHVAGTIGLIIAHLIGV--KEKDTLNCARNLGIAFQLTNISRDVIDDFYVGR 1358
            L E   YCY VAG +GL++  L+GV       L  AR+LGIA QLTNI RDV +D   GR
Sbjct: 110  LAELEEYCYRVAGVVGLLLLRLLGVRDDAAAALEAARHLGIALQLTNILRDVGEDARRGR 169

Query: 1359 CYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTL-PLRSTLA 1417
             YLP DWL   G++  + +       L  ++  +   A  + + +   L  L P R+ LA
Sbjct: 170  VYLPADWLARFGVSPEDLLRGRPSPALRALIRELAARARAHLAEARALLALLPPRRARLA 229

Query: 1418 IVTSWSIYREI 1428
            ++ + ++YR I
Sbjct: 230  VLLAAALYRAI 240

Length = 262

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score =  184 bits (468), Expect = 1e-50
 Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 96  SKHLNSYLIRALGQQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDT 154
           S  L        G +  + +P H  D+P+IMDA V Q    Y F+Y LPL+P  L+IEDT
Sbjct: 143 SGALTVGYQTFYGVEVEVDNPPHDPDVPVIMDARVPQPAKGYRFLYVLPLSPTRLLIEDT 202

Query: 155 RYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLR 214
            Y   P L  D LK+ + DYA    W++  +EREE G IP+ L  +    ++K + +G  
Sbjct: 203 CYADGPALPFDALKQRLMDYARALGWRILEVEREEQGVIPMTLGGDLPATWQKVLRIGAA 262

Query: 215 ANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNR 274
           A L+H +TGYS+P A+ LA  IA   +  + I+      L   +     +++ FF +L R
Sbjct: 263 AGLVHPSTGYSVPRALALAPAIAAI-LRLSSISLRAWITL---WARERWRQRGFFRLLGR 318

Query: 275 LFFLSNSRCHLD----IMQYFYTLPDKIIRNFYANKLSFFDKIRIFSG 318
           + FL+      +      Q FY LP+ +I  F A +LS  D +RI  G
Sbjct: 319 MLFLA---GDPEGRRRFFQRFYRLPEWLIERFLAGRLSLADLLRIGLG 363

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score =  154 bits (392), Expect = 1e-40
 Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 14/240 (5%)

Query: 88  FSGYYSICSKHLNSYLIRALGQQWNLSS-PHGLDIPIIMDATVNQKND------EYHFIY 140
           F          LN     A G +  LS  PHG    +IMDA V+Q            F+Y
Sbjct: 139 FGPLVQYVRFPLNVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLY 198

Query: 141 TLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPI--ALK 198
            +PL    + IE+T    +P L  D L++ I        W++K IE EE G++P+     
Sbjct: 199 AMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPGP 258

Query: 199 NEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKF 258
                  ++    G  A ++H TTGYS+  A+  A  +A         +S +        
Sbjct: 259 FLP----QRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGL 314

Query: 259 IINHQKKQRFFCMLNRLFFLSNSRCHL-DIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS 317
               +++QR+F +L R+ FL+          Q F+ LP+++   F A +LS  D +R+  
Sbjct: 315 WPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLL 374

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|163278 TIGR03465, HpnD, squalene synthase HpnD

 Score =  130 bits (329), Expect = 2e-33
 Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 23/247 (9%)

Query: 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKH-KL-- 1244
            +GS SF   ++L  P  R  +  LYA+CR  DD++D     +          +   KL  
Sbjct: 4    SGS-SFYYGMRLLPPERRRAMTALYAFCREVDDIVDE--DSDPE--------VAQAKLAW 52

Query: 1245 ---KILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITL 1301
               +I R+             P   AL         P     E +DG EMD+ +  Y   
Sbjct: 53   WRAEIDRLYAGAPS------HPVARALADPARRFDLPQEDFLEVIDGMEMDLEQTRYPDF 106

Query: 1302 DETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYL 1361
             E   YC  VAG +G + A + G  +  TL  A +LG A QLTNI RDV +D   GR YL
Sbjct: 107  AELDLYCDRVAGAVGRLSARIFGATDARTLEYAHHLGRALQLTNILRDVGEDARRGRIYL 166

Query: 1362 PLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTS 1421
            P + L+  G+  ++ +       L  +     + A  +Y+ +   L     R+  A    
Sbjct: 167  PAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAM 226

Query: 1422 WSIYREI 1428
             +IYR +
Sbjct: 227  AAIYRAL 233

The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated. Length = 266

>gnl|CDD|224478 COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]

 Score =  126 bits (319), Expect = 6e-32
 Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
             I++  S++F  AI L  P  R  V  LYA+CR  DDV+D     +              
Sbjct: 15   DILRETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDG--VSDPDL-------PAEI 65

Query: 1244 LKILRIKTKRACIGFKMKEPAFL-ALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLD 1302
            L   R +      G    +   L AL ++      P       +D   MD+    Y+  +
Sbjct: 66   LLAWRRELDGDFSGQPASDHPVLAALVEVARRFGLPREAFPALIDAMRMDLDRTRYLDFE 125

Query: 1303 ETLGYCYHVAGTIGLIIAHLIGVKEKD-TLNCARNLGIAFQLTNISRDVIDDFYVGRCYL 1361
            E   YCY VAG +GL++A ++G  +   T   AR LG+A QL NI RDV +D   GR YL
Sbjct: 126  ELEEYCYGVAGAVGLLLARILGPDKDAATRAYARGLGLALQLVNILRDVGEDRRRGRVYL 185

Query: 1362 PLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTS 1421
            P + L   G+++++ +         +++    D A  + + +   L  LP R+ LA++ +
Sbjct: 186  PAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRAQLAVLAA 245

Query: 1422 WSIYREI 1428
              +Y  +
Sbjct: 246  ALLYAYL 252

Length = 288

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score =  110 bits (276), Expect = 3e-25
 Identities = 91/479 (18%), Positives = 160/479 (33%), Gaps = 74/479 (15%)

Query: 721  IGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLS 780
            + G+A A  L  AG    +LE RD+ GGR    + DGF+ + G           L     
Sbjct: 1    LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLL----- 55

Query: 781  KNRMENYVN----LLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLN 836
             N +         LL   P       K +   Y D   DL               R  L 
Sbjct: 56   -NLLLELGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDL-------PPPLFLLLRSLLE 107

Query: 837  YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKS---VYSIVSQFIKNDYLKQAF 893
                           ++ L +  +L + P+L+++        + +     +     + + 
Sbjct: 108  LE-----LSLEEPIRRALLLLVALLLLAPELLELDLLSFSDLLSAAGFLELFLLLFR-SL 161

Query: 894  SFNSLFIGGNPFSTSSIYTLIHALEYE-WGIWFPKGG----VGALIKALIKLFQNLGGNL 948
               +L       S       +   + E  G+ FP GG    +G L + +      LGG +
Sbjct: 162  LAGALGFLPLELSARLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRV 221

Query: 949  ILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLI 1008
             LN++V SI  + + V  V   +G+  +AD ++    +    R L         K   + 
Sbjct: 222  RLNTRVRSITKSGDGV-TVTTVDGRTIEADAVIVTVPLGVLKRILFLP-PLPAAKQEAIR 279

Query: 1009 KKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDN-LSIYLHSPSV 1067
                 +   V       ++      T F+P N      ++FG   +       Y+   S 
Sbjct: 280  NLGFGSVSKVFL-----EFE-----TPFWPEN-----GDLFGLLVTDGLSRGGYVLDTSP 324

Query: 1068 TDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQR 1127
            +  S      S          L +++    + S +        L +  + +LRK L  + 
Sbjct: 325  SSGSGRGVLLSYV--------LGDAARELEDLSDEE-------LLEAVLRDLRKLLGPED 369

Query: 1128 IFTPNDFKDVLGS------YLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG 1180
            +  P    + L S      Y   ++S+ P+    + +RP  R      L+F G  T  G
Sbjct: 370  VPDP---VNFLVSDWHTDPYARGSYSYPPVG-DDSRYRPALRTPVGPGLFFAGEHTSGG 424

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215339 PLN02632, PLN02632, phytoene synthase

 Score =  100 bits (250), Expect = 2e-22
 Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 30/261 (11%)

Query: 1181 AANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSM 1240
               ++    +K+F     L  P  R  +  +Y WCR  D+++D             N S 
Sbjct: 51   RCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDG-----------PNASH 99

Query: 1241 KHKLKILRIKTK-RACIGFKMKEPAFLALQKIISIHSFPVHL--LFEHLDGFEMDVMERT 1297
                 + R + +       +  +    AL   +S   FP+ +    + ++G  MD+++  
Sbjct: 100  ITPAALDRWEARLEDLFDGRPYDMLDAALADTVS--KFPLDIQPFRDMIEGMRMDLVKSR 157

Query: 1298 YITLDETLGYCYHVAGTIGLI------IAHLIGVKEKDTLNCARNLGIAFQLTNISRDVI 1351
            Y   DE   YCY+VAGT+GL+      IA       +   N A  LGIA QLTNI RDV 
Sbjct: 158  YENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGIANQLTNILRDVG 217

Query: 1352 DDFYVGRCYLPLDWLRNEGLNKSNF---VLAENRKKLFKV-VTRILDVAEFYYSSSLVKL 1407
            +D   GR YLP D L   GL   +     + +  +   K  + R    A  Y++ +   +
Sbjct: 218  EDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKR----ARMYFAEAEEGV 273

Query: 1408 NTLPLRSTLAIVTSWSIYREI 1428
            + L   S   +  S  +YR+I
Sbjct: 274  SELDPASRWPVWASLLLYRQI 294

Length = 334

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score =  102 bits (255), Expect = 3e-22
 Identities = 119/512 (23%), Positives = 205/512 (40%), Gaps = 82/512 (16%)

Query: 710  FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD 769
            +D I I  G+GIGG+  A +L   G   ++LE+   PGG A  ++++G+ FD G ++I  
Sbjct: 1    YDAIVI--GSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMI-- 56

Query: 770  PNSIKLLFDLSKNRMENYVNLL----------------PIKPFYRLYWGKEKFLN--YED 811
                   F       +   NLL                P++  Y L  G    ++  Y+D
Sbjct: 57   -------FGFGD---KGTTNLLTRALAAVGRKLETIPDPVQIHYHLPNGLNVKVHREYDD 106

Query: 812  NIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIK-- 869
             I++L   +AKF  ++ +G R F +   +VF        S   L++ +  ++     K  
Sbjct: 107  FIQEL---VAKFP-HEKEGIRRFYDECWQVFN----CLNSMELLSLEEPRYLFRVFFKHP 158

Query: 870  -----IKAW--KSVYSIVSQFIKN-DYLK----QAFSFNSLFIGGNPFSTSSIYTLIHAL 917
                 +  +  ++   I  ++I++   LK    + F ++ +     P   +    ++ + 
Sbjct: 159  LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAG---MVFSD 215

Query: 918  EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDA 977
             +  GI +PKGGVG + ++L+K  +  GG +   ++V  I + N K   V L +G+   A
Sbjct: 216  RHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYA 275

Query: 978  DIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSE----QYTHLAHH 1033
              IVSNA   +T+  LL      KK+         S S   ++ G+        T   HH
Sbjct: 276  KRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTE-CHH 334

Query: 1034 TIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV-----PN 1088
             +                N  +   +I++  P++ D SLAP G    +   P        
Sbjct: 335  ILLEDWT-----------NLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQG 383

Query: 1089 LSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSF 1148
            LS       +E+   + I    LE+   P L   +  + + TP   +  LG   G+    
Sbjct: 384  LSPKDYEAKKEADAERII--DRLEK-IFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPI 440

Query: 1149 APLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG 1180
                       P NR   +  LY VG    PG
Sbjct: 441  PRRTLPGLLPMPFNR-TAIPGLYCVGDSCFPG 471

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases

 Score = 96.3 bits (240), Expect = 5e-22
 Identities = 49/213 (23%), Positives = 72/213 (33%), Gaps = 48/213 (22%)

Query: 1192 SFSSAIKLFDPVIRYK----------VLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMK 1241
            S    + L    +             V +L+A     DD++D+               ++
Sbjct: 1    SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDS-------------DLR 47

Query: 1242 HKLK-ILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLF-----EHLDGFEMDVM- 1294
                     +   A            A Q +  +       LF     E L+G  +D+  
Sbjct: 48   RGKPTAHLRRFGNALAILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEF 107

Query: 1295 -ERTYITLDETLGYCYH-VAGTIGL---IIAHLIGVKEKDTLNC---ARNLGIAFQLTNI 1346
               TY TLDE L YC +  AG +GL   + A L G  ++         R LG+AFQLT+ 
Sbjct: 108  ERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGLAFQLTDD 167

Query: 1347 SRDVIDDFYV----------GRCYLPLDWLRNE 1369
              DV  D             GR  LP+   R  
Sbjct: 168  LLDVFGDAEELGKVGSDLREGRITLPVILARER 200

Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. The head-to-head (HH) IPPS catalyze the successive 1'-1 condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid diphosphates. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Mechanistically and structurally distinct, cis-IPPS are not included in this CD. Length = 236

>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 20/230 (8%)

Query: 1210 MLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQ 1269
             L+A     DD++D+   G R      ++++        I       G  +   AF  L 
Sbjct: 21   KLHAASLVHDDIVDDS--GTRRGLPTAHLAVAIDGLPEAIL-----AGDLLLADAFEELA 73

Query: 1270 KIISIHSFPV--HLLFEHLDGFEMDVM--ERTYITLDETLGYCYHV-AGTIGL---IIAH 1321
            +  S  +  +    L + L+G  +D+        TL+E L YC +  AG +G    + A 
Sbjct: 74   REGSPEALEILAEALLDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAG 133

Query: 1322 LIGVKEKDTLNC---ARNLGIAFQLTNISRDVIDDFYV--GRCYLPLDWLRNEGLNKSNF 1376
            L G + +         R LG+AFQLTN   D   D     G+C LP+ +    G+   + 
Sbjct: 134  LSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDL 193

Query: 1377 VLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYR 1426
            +L E    L + +  +  +AE         + +LP      +  + ++YR
Sbjct: 194  LLVEKSGSLEEALEELAKLAEEALKELNELILSLPDVPRALLALALNLYR 243

Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoterpenes, diterpenes, and sesquiterpenes, are formed from their respective linear isoprenoid diphosphates by class I terpene cyclases. The head-to-head (HH) IPPS catalyze the successive 1'-1 condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid diphosphates. Cyclization of these 30- and 40-carbon linear forms are catalyzed by class II cyclases. Both the isoprenoid chain elongation reactions and the class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Generally, the enzymes in this family exhibit an all-trans reaction pathway, an exception, is the cis-trans terpene cyclase, trichodiene synthase. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD. Length = 243

>gnl|CDD|188327 TIGR03464, HpnC, squalene synthase HpnC

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 15/188 (7%)

Query: 1187 KAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKI 1246
             A  ++F  A  L    +R  +  +YA+ R  DD+ D               S + +L +
Sbjct: 2    VAHYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGD-----------ASAEERLAL 50

Query: 1247 L---RIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
            L   R +      G +   P F+AL + +  H  P+    + LD F  D +   Y T  E
Sbjct: 51   LDDLRAELDAIYSG-EPAAPVFVALARTVRRHGLPIEPFLDLLDAFRQDQVVTRYATWAE 109

Query: 1304 TLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPL 1363
             L YC + A  +G ++  L G  + + L  +  +  A QL N  +DV  D   GR YLP 
Sbjct: 110  LLDYCRYSANPVGRLVLDLYGASDPERLALSDAICTALQLINFWQDVGVDLRKGRVYLPR 169

Query: 1364 DWLRNEGL 1371
            D L   G+
Sbjct: 170  DDLARFGV 177

This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated. Length = 266

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 78.5 bits (194), Expect = 5e-15
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 10  DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK---NHIWSFHQTVLSSSQYMLIK 66
           D +++GAGL   ++A  L+Q  P L VLL++         NH WS     L       + 
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGP-----LA 55

Query: 67  PLITYSWPSYQVKFPKFNRKIFS-GYYSICSKHLNSYLIRALGQQWNLSSPHGLDIPIIM 125
           P + +SWP Y+V+FP   RK+   GY  + S  L+  L+R         +       I +
Sbjct: 56  PCVEHSWPGYEVRFPDGRRKLIGRGYGRVSSDRLHEELLRRCA-----ENGV-----IRL 105

Query: 126 DATV 129
           +A V
Sbjct: 106 NAKV 109

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPN 771
           GAG+ G+  A  L   G   ++LE+RD+ GG AY  +  G+  D G  +     
Sbjct: 3   GAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHTSY 56

Length = 66

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 10  DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPL 68
           D  +IG G     IA  L +  P L V L+E    +  NH +      LS      +   
Sbjct: 1   DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLG---LADC 55

Query: 69  ITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGQ 109
           + + WP  Y+ +FPK  RK+ + Y S+ S  L+  L++   +
Sbjct: 56  VEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPE 97

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 53.4 bits (129), Expect = 6e-07
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
           GAG GG+ALAIRL  AGI   ++EQRDK 
Sbjct: 5   GAGFGGLALAIRLAAAGIPVTVVEQRDKP 33

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 49.5 bits (119), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 718 GAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGP 764
           G GI G++ A RL   G      +LE  D+ GG+    ++DGF  + GP
Sbjct: 7   GGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGP 55

Length = 451

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 918 EYEWGIWFPKGGVG---ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI 974
               G+++P GG      L++AL +  + LG  ++  ++V  +      V  V  ++G+I
Sbjct: 131 GIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLEREGGGV-TVETEDGEI 189

Query: 975 FDADIIVSNADI 986
             AD +V NAD 
Sbjct: 190 -RADKVV-NADS 199

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 138 FIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPI-- 195
           F+Y +P++   +  E+T    K  +  D+LKK +         ++     EE   IP+  
Sbjct: 306 FLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGG 365

Query: 196 ALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLV 255
           +L N +    +K +  G  A+++H  TGYS+  ++  A   A  S+    + +      +
Sbjct: 366 SLPNTE----QKNLAFGAAASMVHPATGYSVVRSLSEAPKYA--SVIARILKNVSSGGKL 419

Query: 256 KKFIIN-------------HQKKQR-FFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRN 301
                +              +K+QR FF     L    ++         F+ LP  + + 
Sbjct: 420 GTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQG 479

Query: 302 FYANKLSFFDKI 313
           F  + LS  D I
Sbjct: 480 FLGSTLSSVDLI 491

Length = 529

>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 538 FIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPI-- 595
           F+Y +P++   +  E+T    K  +  D+LKK +         ++     EE   IP+  
Sbjct: 306 FLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGG 365

Query: 596 ALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLV 655
           +L N +    +K +  G  A+++H  TGYS+  ++  A   A  S+    + +      +
Sbjct: 366 SLPNTE----QKNLAFGAAASMVHPATGYSVVRSLSEAPKYA--SVIARILKNVSSGGKL 419

Query: 656 KKFIIN-------------HQKKQR-FFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRN 701
                +              +K+QR FF     L    ++         F+ LP  + + 
Sbjct: 420 GTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQG 479

Query: 702 FYANKLSFFDKI 713
           F  + LS  D I
Sbjct: 480 FLGSTLSSVDLI 491

Length = 529

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 47.4 bits (113), Expect = 4e-05
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPT 765
           GAGI G+  A  L   G    +LEQ  +PGG A  +++ GF FD G T
Sbjct: 8   GAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGAT 55

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 46.7 bits (111), Expect = 7e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 718 GAGIGGIALAIRLQTAGIS-TIILEQRDKPGG 748
           GAG  G+A A  L+ AG+   +I E+RD  GG
Sbjct: 15  GAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 46.6 bits (111), Expect = 7e-05
 Identities = 21/49 (42%), Positives = 24/49 (48%)

Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAG 763
           I  G GI GIA A  L  A     +LE RD+ GGR +     GF  D G
Sbjct: 4   IVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52

Length = 435

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 46.8 bits (111), Expect = 7e-05
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 718 GAGIGGIALAIRLQT----AGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPN 771
           G GI G+  A  L+       +   ++E  D+ GG+    K+DG++ + GP        +
Sbjct: 9   GGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKS 68

Query: 772 SIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKG 830
           +  L+ DL     E+ +        Y +   + K +     I        K  L  + G
Sbjct: 69  APDLVKDLGL---EHVLVSDATGQRY-VLVNRGKLMPVPTKIAPF----VKTGLFSLGG 119

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 718 GAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPT--VITDPNSI 773
           G GI G++ A RLQ AG  +   + E  D+ GG     K DGF+F+ GP   +      +
Sbjct: 7   GGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEIL 66

Query: 774 KLLFDL 779
            L+ +L
Sbjct: 67  DLIKEL 72

Length = 444

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 44.9 bits (106), Expect = 3e-04
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK---QDGF-IFDAGPTVIT 768
           I  GAG+ G+A A +L + G   ++LE R++PGGR Y  K   +  F   D G +VIT
Sbjct: 164 IIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVIT 221

Length = 738

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 44.2 bits (105), Expect = 4e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 718 GAGIGGIALAIRLQTA-GISTIILEQRDKPGGRAYVYKQDGFIFDAGP-TVITDPNSIKL 775
           GAG+ G+A A  L +  G++ ++ E RD+ GG      +DGFI++ GP +       +  
Sbjct: 19  GAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTS 78

Query: 776 LFDL 779
             D 
Sbjct: 79  AVDS 82

Length = 496

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 18/65 (27%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRD---KPGGRAYVYKQDGFIFDAGPTVITDPNSIK 774
           GAG  G+ALA+ L  AG+   +LE+        GR                 ++ PN+++
Sbjct: 9   GAGPAGLALALALARAGLDVTLLERAPRELLERGRGI--------------ALS-PNALR 53

Query: 775 LLFDL 779
            L  L
Sbjct: 54  ALERL 58

Length = 387

>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase

 Score = 43.9 bits (104), Expect = 6e-04
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 138 FIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRW---KLKNIEREEIGSIP 194
           F+Y +P + N + +E+T    +P L +D +++ +     + R    K+K++E +E   IP
Sbjct: 228 FLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMV---ARLRHLGIKVKSVEEDEKCVIP 284

Query: 195 IALKNEKIIKFKKTICVGLRANLLHATTGY----SLPIAIQLAENIAKY--SITTNQINS 248
           +      I   ++ + +G  A ++H +TGY    +L  A  +A+ I +Y  S  +N    
Sbjct: 285 MGGPLPVIP--QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRG 342

Query: 249 TVLFKLVKKFI--INHQKKQRFFC 270
             L   V   +  I  ++++ FFC
Sbjct: 343 DELSAEVWNDLWPIERRRQREFFC 366

Length = 447

>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase

 Score = 43.9 bits (104), Expect = 6e-04
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 538 FIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRW---KLKNIEREEIGSIP 594
           F+Y +P + N + +E+T    +P L +D +++ +     + R    K+K++E +E   IP
Sbjct: 228 FLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMV---ARLRHLGIKVKSVEEDEKCVIP 284

Query: 595 IALKNEKIIKFKKTICVGLRANLLHATTGY----SLPIAIQLAENIAKY--SITTNQINS 648
           +      I   ++ + +G  A ++H +TGY    +L  A  +A+ I +Y  S  +N    
Sbjct: 285 MGGPLPVIP--QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRG 342

Query: 649 TVLFKLVKKFI--INHQKKQRFFC 670
             L   V   +  I  ++++ FFC
Sbjct: 343 DELSAEVWNDLWPIERRRQREFFC 366

Length = 447

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 43.0 bits (102), Expect = 0.001
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 922 GIWFPKGGV---GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI-FDA 977
            +  P GG+   G L +AL +  Q  G  L LN++V  I   ++ V  ++  NG+   +A
Sbjct: 141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEA 200

Query: 978 DIIVSNA 984
             +++ A
Sbjct: 201 KFVINAA 207

Length = 429

>gnl|CDD|188157 TIGR01559, squal_synth, farnesyl-diphosphate farnesyltransferase

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 43/201 (21%)

Query: 1190 SKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRI 1249
            S+SF++ I+   P +R  V + Y   R  D V D+             +S+  K+ +LR 
Sbjct: 14   SRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDM-----------TISVDKKIPLLRD 62

Query: 1250 KTKRACI---GFKMKEPAFLALQKIISIHSFPVHLL-FEHLDGFEMDVMERT-------- 1297
              +   I    ++  E      +    +  FPV  L F  L     +V+           
Sbjct: 63   FHE--KIYDPDWRFTESD--NEKDRQVLDDFPVVSLEFLKLKPKYQEVIADITRRMGNGM 118

Query: 1298 --YI----TLDETLG----YCYHVAGTIGLIIAHLIGVKEKDTLNCARN------LGIAF 1341
              +I    T ++T+G    YC++VAG +G+ ++ L      +  +   +      +G+  
Sbjct: 119  ADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGFEDPSLGESEALSNSMGLFL 178

Query: 1342 QLTNISRDVIDDFYVGRCYLP 1362
            Q TNI RD ++D   GR + P
Sbjct: 179  QKTNIIRDYLEDINEGRMFWP 199

This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family. Length = 337

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
           GAG+ G+A A  L  AG+   +LE+ D
Sbjct: 10  GAGLNGLAAAALLARAGLKVTVLEKND 36

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1428
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	100.0
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
TIGR03464	266	HpnC squalene synthase HpnC. This family of genes	100.0
cd00683	265	Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase	100.0
PLN02632	334	phytoene synthase	100.0
TIGR03465	266	HpnD squalene synthase HpnD. The genes of this fam	100.0
PLN02697	529	lycopene epsilon cyclase	100.0
PLN02463	447	lycopene beta cyclase	100.0
COG1562	288	ERG9 Phytoene/squalene synthetase [Lipid metabolis	100.0
PF00494	267	SQS_PSY: Squalene/phytoene synthase; InterPro: IPR	100.0
TIGR01559	336	squal_synth farnesyl-diphosphate farnesyltransfera	100.0
KOG4254|consensus	561		100.0
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	100.0
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	100.0
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	100.0
PLN02697	529	lycopene epsilon cyclase	99.97
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.97
PRK07233	434	hypothetical protein; Provisional	99.97
PLN02612	567	phytoene desaturase	99.97
PLN02463	447	lycopene beta cyclase	99.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.96
PLN02487	569	zeta-carotene desaturase	99.96
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.96
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.96
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.96
PLN02576	496	protoporphyrinogen oxidase	99.96
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.95
PRK07208	479	hypothetical protein; Provisional	99.95
PLN02268	435	probable polyamine oxidase	99.95
PLN02568	539	polyamine oxidase	99.94
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.94
PLN02529	738	lysine-specific histone demethylase 1	99.93
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.93
PLN02676	487	polyamine oxidase	99.93
KOG0685|consensus	498		99.93
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.93
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.93
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.92
KOG4411|consensus	292		99.92
PRK08013	400	oxidoreductase; Provisional	99.92
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.92
PLN03000	881	amine oxidase	99.92
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.92
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.91
KOG0029|consensus	501		99.91
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.91
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.91
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.91
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.9
PLN02976	1713	amine oxidase	99.9
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.9
PRK06996	398	hypothetical protein; Provisional	99.9
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.89
PRK06185	407	hypothetical protein; Provisional	99.89
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.89
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.86
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.86
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.86
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.86
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.86
PRK09126	392	hypothetical protein; Provisional	99.86
KOG1276|consensus	491		99.84
KOG3855|consensus	481		99.84
KOG1459|consensus	413		99.84
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.83
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.82
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.82
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.82
PRK07045	388	putative monooxygenase; Reviewed	99.81
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.81
PRK08244	493	hypothetical protein; Provisional	99.81
PRK10015	429	oxidoreductase; Provisional	99.81
PRK07588	391	hypothetical protein; Provisional	99.8
PRK06834	488	hypothetical protein; Provisional	99.8
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.8
PRK11445	351	putative oxidoreductase; Provisional	99.78
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.77
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.77
PLN02985	514	squalene monooxygenase	99.77
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.77
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.77
PRK07190	487	hypothetical protein; Provisional	99.77
PTZ00367	567	squalene epoxidase; Provisional	99.77
PRK06475	400	salicylate hydroxylase; Provisional	99.76
COG3349	485	Uncharacterized conserved protein [Function unknow	99.76
PRK06753	373	hypothetical protein; Provisional	99.76
PRK05868	372	hypothetical protein; Validated	99.75
PRK10157	428	putative oxidoreductase FixC; Provisional	99.75
PRK06184	502	hypothetical protein; Provisional	99.75
PRK07538	413	hypothetical protein; Provisional	99.72
PRK08294	634	phenol 2-monooxygenase; Provisional	99.71
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.7
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.7
cd00867	236	Trans_IPPS Trans-Isoprenyl Diphosphate Synthases.	99.7
PRK08163	396	salicylate hydroxylase; Provisional	99.69
PRK06126	545	hypothetical protein; Provisional	99.67
PRK06847	375	hypothetical protein; Provisional	99.66
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.65
PRK07236	386	hypothetical protein; Provisional	99.64
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.55
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.55
cd00385	243	Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym	99.53
KOG2614|consensus	420		99.48
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.45
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.36
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.34
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.3
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.3
COG2081	408	Predicted flavoproteins [General function predicti	99.29
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.21
PRK11445	351	putative oxidoreductase; Provisional	99.19
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.13
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.12
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.12
COG0579	429	Predicted dehydrogenase [General function predicti	99.08
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.05
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.05
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.03
KOG1459|consensus	413		99.02
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.01
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.98
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.97
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.97
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.97
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.97
PRK06847	375	hypothetical protein; Provisional	98.97
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.96
PRK07190	487	hypothetical protein; Provisional	98.96
PRK07045	388	putative monooxygenase; Reviewed	98.95
KOG1298|consensus	509		98.94
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.92
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.92
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.91
KOG2820|consensus	399		98.91
PRK06184	502	hypothetical protein; Provisional	98.89
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.89
PRK06185	407	hypothetical protein; Provisional	98.88
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.88
PRK09126	392	hypothetical protein; Provisional	98.88
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.88
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.87
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.87
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.86
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.86
PRK05868	372	hypothetical protein; Validated	98.83
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.82
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.82
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.8
PRK08244	493	hypothetical protein; Provisional	98.78
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.76
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.76
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.76
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.75
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.72
PRK08274	466	tricarballylate dehydrogenase; Validated	98.71
PRK05257	494	malate:quinone oxidoreductase; Validated	98.7
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.68
PLN02661	357	Putative thiazole synthesis	98.68
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.67
PRK10157	428	putative oxidoreductase FixC; Provisional	98.67
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.67
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.65
KOG1439|consensus	440		98.64
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.64
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.62
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.62
PRK08294	634	phenol 2-monooxygenase; Provisional	98.62
PRK07236	386	hypothetical protein; Provisional	98.61
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.6
PRK10015	429	oxidoreductase; Provisional	98.59
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.58
PRK08013	400	oxidoreductase; Provisional	98.58
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.57
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.55
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.54
PRK07538	413	hypothetical protein; Provisional	98.54
PRK07121	492	hypothetical protein; Validated	98.53
KOG2844|consensus	856		98.53
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.53
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.52
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	98.52
PRK08163	396	salicylate hydroxylase; Provisional	98.51
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.49
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.49
PRK06834	488	hypothetical protein; Provisional	98.48
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.47
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.47
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.46
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.45
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.45
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.44
PRK06753	373	hypothetical protein; Provisional	98.44
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.43
PRK07588	391	hypothetical protein; Provisional	98.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.42
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.41
PTZ00367	567	squalene epoxidase; Provisional	98.41
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.4
PRK06175	433	L-aspartate oxidase; Provisional	98.4
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.38
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.36
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.36
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.35
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.35
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.34
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.33
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.32
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.31
PRK08275	554	putative oxidoreductase; Provisional	98.3
PRK08401	466	L-aspartate oxidase; Provisional	98.3
PRK06475	400	salicylate hydroxylase; Provisional	98.3
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.29
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.29
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.29
KOG2853|consensus	509		98.29
PRK07804	541	L-aspartate oxidase; Provisional	98.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.28
PRK06126	545	hypothetical protein; Provisional	98.28
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.27
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.27
PRK07395	553	L-aspartate oxidase; Provisional	98.27
PLN02985	514	squalene monooxygenase	98.26
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.25
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.25
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.25
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.25
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.23
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.23
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.23
PRK12839	572	hypothetical protein; Provisional	98.22
PRK06116	450	glutathione reductase; Validated	98.22
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.2
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.19
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.18
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.16
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.16
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.15
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.14
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.14
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	98.14
PRK09897	534	hypothetical protein; Provisional	98.12
PRK08071	510	L-aspartate oxidase; Provisional	98.11
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.11
PRK07512	513	L-aspartate oxidase; Provisional	98.11
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.08
PRK06996	398	hypothetical protein; Provisional	98.05
PLN02815	594	L-aspartate oxidase	98.01
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.99
PLN02507	499	glutathione reductase	97.98
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.98
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.96
KOG1298|consensus	509		97.96
COG3573	552	Predicted oxidoreductase [General function predict	97.95
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.94
PRK10262	321	thioredoxin reductase; Provisional	97.91
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.91
KOG2404|consensus	477		97.9
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.9
PRK09077	536	L-aspartate oxidase; Provisional	97.9
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.9
COG2081	408	Predicted flavoproteins [General function predicti	97.89
KOG2415|consensus	621		97.86
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.83
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.81
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.81
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.76
KOG2852|consensus	380		97.75
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.71
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.69
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.67
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.66
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.66
KOG2415|consensus	621		97.66
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.65
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.63
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.63
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.6
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.59
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.58
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.57
KOG1399|consensus	448		97.55
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.55
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.54
PRK06370	463	mercuric reductase; Validated	97.51
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.5
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.49
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.48
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.47
PRK12831	464	putative oxidoreductase; Provisional	97.45
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.43
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.43
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.42
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.41
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.41
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.4
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.4
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.4
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.4
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.39
PLN02852	491	ferredoxin-NADP+ reductase	97.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.37
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.36
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.35
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.35
KOG2665|consensus	453		97.34
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.33
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.3
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.3
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.29
PRK14694	468	putative mercuric reductase; Provisional	97.29
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.28
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.28
KOG2614|consensus	420		97.26
TIGR02053	463	MerA mercuric reductase. This model represents the	97.26
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.25
PRK13748	561	putative mercuric reductase; Provisional	97.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.24
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.24
PTZ00058	561	glutathione reductase; Provisional	97.24
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.23
PRK14727	479	putative mercuric reductase; Provisional	97.23
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.22
PTZ00188	506	adrenodoxin reductase; Provisional	97.21
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.2
PTZ00052	499	thioredoxin reductase; Provisional	97.16
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.14
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.13
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.11
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.11
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.09
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.08
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.07
KOG0399|consensus	2142		97.07
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.06
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.05
PLN02785	587	Protein HOTHEAD	97.04
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.04
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.02
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.01
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.01
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.99
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.98
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.96
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.95
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.95
PLN02546	558	glutathione reductase	96.95
PLN02661	357	Putative thiazole synthesis	96.87
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.81
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.8
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.79
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.77
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.76
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.75
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.75
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.68
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.64
KOG4405|consensus	547		96.63
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.62
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.61
KOG0042|consensus	680		96.6
KOG2960|consensus	328		96.6
KOG1335|consensus	506		96.59
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.58
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.54
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.54
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.54
PRK11728	393	hydroxyglutarate oxidase; Provisional	96.54
KOG2960|consensus	328		96.53
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.51
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.51
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.49
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.48
KOG1238|consensus	623		96.47
PRK02106	560	choline dehydrogenase; Validated	96.47
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.46
KOG0029|consensus	501		96.44
COG3573	552	Predicted oxidoreductase [General function predict	96.38
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.38
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	96.37
PRK13984	604	putative oxidoreductase; Provisional	96.36
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.35
PRK05257	494	malate:quinone oxidoreductase; Validated	96.35
PLN02576	496	protoporphyrinogen oxidase	96.34
PRK07208	479	hypothetical protein; Provisional	96.34
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.33
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.31
PRK02106	560	choline dehydrogenase; Validated	96.3
PRK06116	450	glutathione reductase; Validated	96.3
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.29
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.26
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.24
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.2
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.2
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	96.16
PRK07233	434	hypothetical protein; Provisional	96.14
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.11
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.11
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	96.07
COG0579	429	Predicted dehydrogenase [General function predicti	96.05
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.03
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.99
KOG1238|consensus	623		95.99
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.97
PLN02268	435	probable polyamine oxidase	95.97
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.97
PRK06370	463	mercuric reductase; Validated	95.96
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.93
PRK08274	466	tricarballylate dehydrogenase; Validated	95.9
PRK08275	554	putative oxidoreductase; Provisional	95.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.89
KOG1800|consensus	468		95.84
PRK09077	536	L-aspartate oxidase; Provisional	95.82
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.79
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.76
PRK07846	451	mycothione reductase; Reviewed	95.76
PRK12839	572	hypothetical protein; Provisional	95.74
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.73
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.73
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.72
KOG2820|consensus	399		95.71
PTZ00052	499	thioredoxin reductase; Provisional	95.68
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.63
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	95.61
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.6
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.6
PLN02568	539	polyamine oxidase	95.59
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.58
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.58
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.58
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.57
KOG1276|consensus	491		95.56
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.56
PLN02507	499	glutathione reductase	95.54
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.52
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.5
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.5
PRK14694	468	putative mercuric reductase; Provisional	95.48
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.39
PRK07846	451	mycothione reductase; Reviewed	95.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	95.36
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	95.36
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.36
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	95.35
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	95.35
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	95.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.33
PRK13748	561	putative mercuric reductase; Provisional	95.33
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.27
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.27
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.24
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.23
PRK07121	492	hypothetical protein; Validated	95.21
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	95.19
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	95.18
PLN02785	587	Protein HOTHEAD	95.16
PRK06175	433	L-aspartate oxidase; Provisional	95.15
PRK09897	534	hypothetical protein; Provisional	95.14
PRK14727	479	putative mercuric reductase; Provisional	95.14
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.13
TIGR02053	463	MerA mercuric reductase. This model represents the	95.13
PTZ00058	561	glutathione reductase; Provisional	95.06
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	95.04
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.03
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	94.95
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.93
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.92
PLN02676	487	polyamine oxidase	94.89
PRK13977	576	myosin-cross-reactive antigen; Provisional	94.87
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	94.74
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.71
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.67
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.66
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.65
PRK10262	321	thioredoxin reductase; Provisional	94.63
PRK07804	541	L-aspartate oxidase; Provisional	94.57
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.56
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	94.52
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.52

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=100.00  E-value=1.5e-56  Score=534.07  Aligned_cols=309  Identities=23%  Similarity=0.366  Sum_probs=266.0

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC---CCceeEEeccccCccccccccccccCccCccEEEcCCCccc
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV---KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRK   86 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~---~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (1428)
                      ||||||||||||++|++|.+..++++|+|||++++.   +++|||||.+++     ..+++++.++|+++.|++++.++.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~-----~~~~~~v~~~w~~~~v~~~~~~~~   75 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL-----GPLDSLVSHRWSGWRVYFPDGSRI   75 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc-----cchHHHHheecCceEEEeCCCceE
Confidence            899999999999999999776788999999998765   689999999854     337899999999999999987765


Q ss_pred             c-CccccceehhHHHHHHHHHc----------------------------C-----------------------------
Q psy10545         87 I-FSGYYSICSKHLNSYLIRAL----------------------------G-----------------------------  108 (1428)
Q Consensus        87 ~-~~~Y~~~~~~~~~~~~~~~~----------------------------~-----------------------------  108 (1428)
                      + .|+|++|++.+|+++|.+..                            |                             
T Consensus        76 ~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G  155 (374)
T PF05834_consen   76 LIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYG  155 (374)
T ss_pred             EcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccccccceeEE
Confidence            4 67999999999999998720                            0                             


Q ss_pred             CEEEEecC-CCCCceEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHHcCCcceeEEE
Q psy10545        109 QQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIER  187 (1428)
Q Consensus       109 ~~~~~~~~-~g~~~~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~  187 (1428)
                      .+++++.| |+.++++|||||++|..++++|+|+||+|++++|||+|+|++++.++.+.|+++|++||+++|++.++|++
T Consensus       156 ~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~  235 (374)
T PF05834_consen  156 WEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILE  235 (374)
T ss_pred             EEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEE
Confidence            01111112 23478999999999843799999999999999999999999999779999999999999999999999999


Q ss_pred             EEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh-cCCCChhHHHHHHHHhHHHHHhHH
Q psy10545        188 EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-TNQINSTVLFKLVKKFIINHQKKQ  266 (1428)
Q Consensus       188 ~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  266 (1428)
                      +|.|+|||+...+++...+++++||++||++||||||||.++|++|++||+++++ +.+...     ..+.|.+..|+++
T Consensus       236 ~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~~~~~~~-----~~~~~~~~~~~~~  310 (374)
T PF05834_consen  236 EERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKGGAPLRA-----WSPLWPRERWRDR  310 (374)
T ss_pred             eecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhccccccc-----cccccHHHHHHHH
Confidence            9999999976544434467899999999999999999999999999999999985 332221     1135667788899


Q ss_pred             HHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHhcCCchHHHHHH
Q psy10545        267 RFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAI  328 (1428)
Q Consensus       267 ~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~  328 (1428)
                      .|+|.+++.+|...++ ..+.||+.||++|+++|+|||++++++.|..+||.++|+++|..|+
T Consensus       311 ~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~~~~p~~p~~~a~  373 (374)
T PF05834_consen  311 RFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARFLSERSSLADDLRIMLALPKRPFLRAL  373 (374)
T ss_pred             HHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHHHhCCCcChhhcc
Confidence            9999999888888877 9999999999999999999999999999999999999999999875

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=100.00  E-value=6e-56  Score=525.46  Aligned_cols=313  Identities=35%  Similarity=0.642  Sum_probs=275.8

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEcCCCccccC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIF   88 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (1428)
                      |++||||||||+++|++|.+..++++|+++|+.+.. +|+|||||+.++.+....++++++.++|+++.|++++..+.++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            899999999999999999987678999999999888 8999999999887666667899999999999999988788889


Q ss_pred             ccccceehhHHHHHHHHHcCC---------------------------------------------------EEEEecCC
Q psy10545         89 SGYYSICSKHLNSYLIRALGQ---------------------------------------------------QWNLSSPH  117 (1428)
Q Consensus        89 ~~Y~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~  117 (1428)
                      ++|++|++.+|+++|.+..+.                                                   +++++.||
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~~~~~~~~Q~f~G~~~r~~~p~  160 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPH  160 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCCccccceeeEEEEEEEEEcCCC
Confidence            999999999999998763221                                                   12222455


Q ss_pred             CCCceEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHHcCCcceeEEEEEEEeecCCC
Q psy10545        118 GLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIAL  197 (1428)
Q Consensus       118 g~~~~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~  197 (1428)
                      +.++++|||||++|. ++++|+|+|||+++++|||+|+|++.+.++.++|+++|++|+++.||..++|+++|.|+|||+.
T Consensus       161 ~~~~~~lMD~~~~q~-~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~  239 (370)
T TIGR01789       161 GLENPIIMDATVDQL-AGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLL  239 (370)
T ss_pred             CCCccEEEeeeccCC-CCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeec
Confidence            679999999999997 8999999999999999999999999888899999999999999999999999999999999987


Q ss_pred             Ccchh---hcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh-hcCCCChhHHHHHHHHhHHHHHhHHHHHHHHH
Q psy10545        198 KNEKI---IKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI-TTNQINSTVLFKLVKKFIINHQKKQRFFCMLN  273 (1428)
Q Consensus       198 ~~~~~---~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (1428)
                      ..++.   ....+++.||.|||++||+|||+|..++++|+.||+.++ ++.++.     +....+++.+|+++++|++++
T Consensus       240 ~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  314 (370)
T TIGR01789       240 GGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLA-----AFIDSRARRHWSKTGYYRLLN  314 (370)
T ss_pred             CCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcCccchh-----hhhhHHHHHHHHHhHHHHHHH
Confidence            53332   233458889999999999999999999999999999986 443222     233577788999999999999


Q ss_pred             HHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHhcCCchHHHHHH
Q psy10545        274 RLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAI  328 (1428)
Q Consensus       274 ~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~  328 (1428)
                      ++||....| .+++||++||+||+++|+|||++++++.|..+||.|+||+||.+|+
T Consensus       315 ~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~~~~p~~p~~~a~  370 (370)
T TIGR01789       315 RMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLRVLWGKPPVPIHSAL  370 (370)
T ss_pred             HHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHHcCCCCcchhhcC
Confidence            999966677 8899999999999999999999999999999999999999999874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=2.3e-53  Score=530.60  Aligned_cols=484  Identities=49%  Similarity=0.899  Sum_probs=420.7

Q ss_pred             eeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCchHHHHHHHHhcccccccceEEec
Q psy10545        714 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPI  793 (1428)
Q Consensus       714 ViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~l~~~~~  793 (1428)
                      |||||||++||+||.+|+++|++|+||||++++||+++|++.+||.||.|++++..++.+.++++++|.++.+.+++.+.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~   80 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL   80 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEEC
Confidence            69999999999999999999999999999999999999999999999999999988888899999999777677888888


Q ss_pred             CCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh-hHHHHhhcc
Q psy10545        794 KPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI-LPKLIKIKA  872 (1428)
Q Consensus       794 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  872 (1428)
                      ++.+.+.+++|+.+.++.+.+++.+.+.+++|.+.+.+.+|++.++..+......+...++.++.++... .........
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (502)
T TIGR02734        81 DPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLA  160 (502)
T ss_pred             CCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccC
Confidence            8888888888888999999999999999999999999999999999988755555555566555544332 112222234


Q ss_pred             cCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCc
Q psy10545        873 WKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNS  952 (1428)
Q Consensus       873 ~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~  952 (1428)
                      ..|+.+++++++.++.++.++.....+++.+|.+.++.+.++.+.....|.+++.||++.++++|.+.++++|++|++++
T Consensus       161 ~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~  240 (502)
T TIGR02734       161 WRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNA  240 (502)
T ss_pred             cCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECC
Confidence            78999999999999999999987676778888888877777666666678899999999999999999999999999999


Q ss_pred             eeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeec---CCcCC
Q psy10545        953 QVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLS---EQYTH 1029 (1428)
Q Consensus       953 ~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~---~~~~~ 1029 (1428)
                      +|++|..+++++++|++++|+++.||.||+|+++..+...|++....+....+.+++.+++.+.++++++++   ++++.
T Consensus       241 ~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~  320 (502)
T TIGR02734       241 EVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ  320 (502)
T ss_pred             eEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCC
Confidence            999999999888999999998999999999999999988788766555555567788888889999999999   56776


Q ss_pred             CcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHH
Q psy10545       1030 LAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFM 1109 (1428)
Q Consensus      1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~ 1109 (1428)
                      +++|++++.+++...+..++..+.++++|.++++.||..||+++|+|++++++++++|....+...|+..++++.+.+++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~  400 (502)
T TIGR02734       321 LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILA  400 (502)
T ss_pred             cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHH
Confidence            77889999888887777777778889999999999999999999999999999988876411145798888999999999


Q ss_pred             HHHhcc-CCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccccc
Q psy10545       1110 YLEQYC-IPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKA 1188 (1428)
Q Consensus      1110 ~L~~~~-~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~ 1188 (1428)
                      .|++ . +|+++++|+..++.||.+|+++++.+.|++||..+...|...+||....++++|||+||++|+||+|++|++.
T Consensus       401 ~l~~-~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~  479 (502)
T TIGR02734       401 YLEE-RAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLG  479 (502)
T ss_pred             HHHH-hcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHH
Confidence            9998 6 9999999999999999999999999999999999988888788886433349999999999999999999999


Q ss_pred             cccccccccc
Q psy10545       1189 GSKSFSSAIK 1198 (1428)
Q Consensus      1189 sg~~~a~~i~ 1198 (1428)
                      ||+.+|+.|.
T Consensus       480 sg~~~a~~il  489 (502)
T TIGR02734       480 SAKATAKLML  489 (502)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=2e-45  Score=456.39  Aligned_cols=468  Identities=22%  Similarity=0.304  Sum_probs=368.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccC------CchHHHHHHHHhccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVIT------DPNSIKLLFDLSKNRME  785 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~------~~~~~~~l~~~lG~~l~  785 (1428)
                      +||||||||++||+||.+|+++|++|+||||++.+||++++++.+||.||.|++++.      .++.+.+.+..+|..  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRK--   78 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCc--
Confidence            589999999999999999999999999999999999999999999999999999875      345566677776643  


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH---
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF---  862 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  862 (1428)
                        +++...+..+.+.+++|..+.++.+.+++.+.+.+.+|++.+.+.+|++.++..+..... +...++..+..+..   
T Consensus        79 --~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  155 (493)
T TIGR02730        79 --LETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNS-MELLSLEEPRYLFRVFF  155 (493)
T ss_pred             --ccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHh-hhhccccChHHHHHHHh
Confidence              334444444567777888888999999999999999999999999999998887754321 11111111111111   


Q ss_pred             hhH----HHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCC-CchhHHHHHHHHhc-cccceeeecCchHHHHHH
Q psy10545        863 ILP----KLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNP-FSTSSIYTLIHALE-YEWGIWFPKGGVGALIKA  936 (1428)
Q Consensus       863 ~~~----~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p-~~~s~~~~~~~~~~-~~~g~~~~~gG~~~l~~~  936 (1428)
                      ..+    ..... ...++.+++++++.++.++.++.....+++..| .+.+..+..+.+.. ..+|.+++.||++.++++
T Consensus       156 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~  234 (493)
T TIGR02730       156 KHPLACLGLAKY-LPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAES  234 (493)
T ss_pred             hchhhhhHHHHH-hhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHH
Confidence            000    11111 257899999999999999999987766667654 56665554443322 235778999999999999


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
                      |.+.++++|++|+++++|++|..+++++.+|++++|+++.||.||+|++++.+...|++....++.....+++++++++.
T Consensus       235 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~  314 (493)
T TIGR02730       235 LVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSF  314 (493)
T ss_pred             HHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCce
Confidence            99999999999999999999999989899999999989999999999999999988988766666555666788888899


Q ss_pred             EEEEEeecCCc-CCC-cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCC---
Q psy10545       1017 FVIYFGLSEQY-THL-AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSN--- 1091 (1428)
Q Consensus      1017 ~~v~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~--- 1091 (1428)
                      +++|++++++. |.. ..|.+++ +++..         .....+.++++.|+..||+++|+|+++++++++.+....   
T Consensus       315 ~~~~l~l~~~~~p~~~~~~~~~~-~~~~~---------~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~  384 (493)
T TIGR02730       315 LSLHLGVKADVLPPGTECHHILL-EDWTN---------LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGL  384 (493)
T ss_pred             EEEEEEecCccCCCCCCccEEec-chhhc---------cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCC
Confidence            99999999974 322 2234444 33321         123468899999999999999999999888776443210   


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccC-CCCCCCCCCce
Q psy10545       1092 SSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFR-PHNRDKNLTNL 1170 (1428)
Q Consensus      1092 ~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~r-p~~~t~~i~~L 1170 (1428)
                      +..+|+..++++.+.+++.|++ .+|+++++|+..++.||.+++++++.+.|+ ||..+...+.+..+ |..+++ ++||
T Consensus       385 ~~~~y~~~k~~~~~~il~~l~~-~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~~~~~~~~~~~~~~t~-i~gL  461 (493)
T TIGR02730       385 SPKDYEAKKEADAERIIDRLEK-IFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPRRTLPGLLPMPFNRTA-IPGL  461 (493)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-HCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCcccccccccccCCCCCCC-CCCe
Confidence            1235777889999999999998 899999999999999999999998888887 77766555554454 556776 9999


Q ss_pred             EEecCCccCCCCcccccccccccccccc
Q psy10545       1171 YFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1171 y~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |+||++|+||+|++||+.||+.+|+.|.
T Consensus       462 yl~G~~~~pG~Gv~g~~~sG~~~a~~i~  489 (493)
T TIGR02730       462 YCVGDSCFPGQGLNAVAFSGFACAHRVA  489 (493)
T ss_pred             EEecCcCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=1.3e-45  Score=459.22  Aligned_cols=460  Identities=17%  Similarity=0.245  Sum_probs=358.0

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l  788 (1428)
                      .||||||||++||+||..|+++|++|+|||+++++||++++++.+||.||.|+|++.+   ++....+++++|+++.+  
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~--   79 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE--   79 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc--
Confidence            5899999999999999999999999999999999999999999999999999999864   56678899999975422  


Q ss_pred             eEEecCCceEEEeCCC-cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccC---cccHHHHHHhh
Q psy10545        789 NLLPIKPFYRLYWGKE-KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKS---FLTINDMLFIL  864 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  864 (1428)
                       ....++...+.+++| ..+.++.+.+++.+.+.+.+|.+.+    |+..+.+.+......+...+   +.++.++....
T Consensus        80 -~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (492)
T TIGR02733        80 -AKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV  154 (492)
T ss_pred             -cccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence             344566677788888 5678889999999999999988743    45554444443222222222   22233322211


Q ss_pred             ----HHHH--hhcccCCHHHHHHhh--cCCHHHHHHHHhhcc-cccCCCCchhHHHHH--HHHhccccceeeecCchHHH
Q psy10545        865 ----PKLI--KIKAWKSVYSIVSQF--IKNDYLKQAFSFNSL-FIGGNPFSTSSIYTL--IHALEYEWGIWFPKGGVGAL  933 (1428)
Q Consensus       865 ----~~~~--~~~~~~s~~~~l~~~--~~~~~l~~~l~~~~~-~~g~~p~~~s~~~~~--~~~~~~~~g~~~~~gG~~~l  933 (1428)
                          +...  ......|+.++++++  +.++.++.++..... +.+.+|.+.++++.+  +.+.....|.++++||++.|
T Consensus       155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l  234 (492)
T TIGR02733       155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTL  234 (492)
T ss_pred             HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHH
Confidence                1100  011258899999886  789999999986654 334556677766543  33344446789999999999


Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHh
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLI 1008 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~ 1008 (1428)
                      +++|++.++++|++|+++++|++|..+++++.+|.+.+|     +++.||+||+|+++..+.. +++++.+++...+.++
T Consensus       235 ~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll~~~~~~~~~~~~~~  313 (492)
T TIGR02733       235 SDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LLGPLGLPPGYRKRLK  313 (492)
T ss_pred             HHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hcCcccCCHHHHHHHh
Confidence            999999999999999999999999999888778877665     5799999999999987765 7776667777778899


Q ss_pred             hcCCCCceEEEEEeecCCcCCC--cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545       1009 KKKMSNSLFVIYFGLSEQYTHL--AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1009 ~~~~~~s~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
                      ++.++.+.+++++++++..++.  ..+..+.           ++     ....+|++.++ .||+++|+|++++++.+..
T Consensus       314 ~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~-----------~~-----~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~  376 (492)
T TIGR02733       314 KLPEPSGAFVFYLGVKRAALPVDCPPHLQFL-----------SD-----HQGSLFVSISQ-EGDGRAPQGEATLIASSFT  376 (492)
T ss_pred             cCCCCCceEEEEEeecccccCCCCCcceeec-----------cC-----CCceEEEEeCC-ccccCCCCCceEEEEEcCC
Confidence            9999988889999999853221  1222211           11     12367888765 5789999999998777766


Q ss_pred             CCCCC---CCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCC
Q psy10545       1087 PNLSN---SSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNR 1163 (1428)
Q Consensus      1087 p~~~~---~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~ 1163 (1428)
                      +....   +..+|...++++.+.+++.|++ .+|+++++++..++.||.+|+++++.+.|++||..+...|...+++..+
T Consensus       377 ~~~~~~~~~~~~y~~~k~~~~~~il~~le~-~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~  455 (492)
T TIGR02733       377 DTNDWSSLDEEDYTAKKKQYTQTIIERLGH-YFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSR  455 (492)
T ss_pred             CHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCC
Confidence            43211   1335777888999999999998 8999999999999999999999999999999999988888766677667


Q ss_pred             CCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1164 DKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1164 t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ++ ++|||+||++|+||+|++|++.||+.+|+.|.
T Consensus       456 t~-i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~  489 (492)
T TIGR02733       456 TP-VKGLWLCGDSIHPGEGTAGVSYSALMVVRQIL  489 (492)
T ss_pred             CC-CCCeEEecCccCCCCcHHHHHHHHHHHHHHHh
Confidence            76 99999999999999999999999999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-43  Score=435.08  Aligned_cols=474  Identities=28%  Similarity=0.438  Sum_probs=374.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCchHHHHHHHHhccccccc-
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENY-  787 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~-  787 (1428)
                      |+++||||||||++||+||.+|+++|++|+||||++++||+++|++..||.||+|++++..+... .++++++. +... 
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~-~~~~~l~~-l~~~~   78 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG-PLFRELGN-LDADG   78 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH-HHHHHhcc-Ccccc
Confidence            45789999999999999999999999999999999999999999999999999999999887765 78888884 4433 


Q ss_pred             ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH---HHHHhh
Q psy10545        788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN---DMLFIL  864 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  864 (1428)
                      +.+...++.+...+++|..+.+..+.+.+...+.+.+|.+.+.+.+++....+.++.....+...+.....   ......
T Consensus        79 l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (487)
T COG1233          79 LDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERL  158 (487)
T ss_pred             eeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHH
Confidence            66666678888888989999999999999999999999999999999988777776655544443333221   100111


Q ss_pred             HHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHc
Q psy10545        865 PKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL  944 (1428)
Q Consensus       865 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~  944 (1428)
                      ...... ...++.+++...+.++.++..+.....+.+..|...++++.++.......|+++|+||++.|+++|++.++++
T Consensus       159 l~~~~~-~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~  237 (487)
T COG1233         159 LRLLGF-SLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREH  237 (487)
T ss_pred             HHHHHH-hhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHc
Confidence            111111 3567788888889999999998865544345566666677777888888899999999999999999999999


Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeec
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLS 1024 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~ 1024 (1428)
                      |++|+++++|++|.+++|+.++|++.+|+.+.+|.||++..+ .+...+.+....    .+......+..+.+..+++++
T Consensus       238 Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~~~----~~~~~~~~~~~~al~~~~g~~  312 (487)
T COG1233         238 GGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEARR----PRYRGSYLKSLSALSLYLGLK  312 (487)
T ss_pred             CCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhhhh----hccccchhhhhHHHHhccCCC
Confidence            999999999999999999878888888878999999999988 444444443211    123344445556778888888


Q ss_pred             CCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCcc-EEEEEEecCCCCCCCCCcHHHHHHH
Q psy10545       1025 EQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCS-TFYALIPVPNLSNSSINWSEESIKL 1103 (1428)
Q Consensus      1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~-~l~v~~~~p~~~~~~~~~~~~~ee~ 1103 (1428)
                      ...++..++..++..++...+...|.. .....++++++.||..||+++|+|++ .+..+.+.|.    ...|+..++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~----~~~~~~~~~~~  387 (487)
T COG1233         313 GDLLPLAHHTTILLGDTREQIEEAFDD-RAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPS----LGDYDELKESL  387 (487)
T ss_pred             CCCcchhhcceEecCCcHHHHHHHhhh-hcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCc----CCChHHHHHHH
Confidence            864555666666667777767777654 33333389999999999999999987 3333333441    34788888888


Q ss_pred             HHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCc
Q psy10545       1104 KNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAAN 1183 (1428)
Q Consensus      1104 ~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv 1183 (1428)
                      .+. +..+++ .+|+++++++...+.+|.+++++++.+.|.+++..+...|....||..+.++++|||+||++|+||+|+
T Consensus       388 ~~~-~~~~~~-~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv  465 (487)
T COG1233         388 ADA-IDALEE-LAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGGGV  465 (487)
T ss_pred             HHH-HHHHhh-cCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCCCc
Confidence            888 777887 999999999999999999999999999999999999999998999887544499999999999999999


Q ss_pred             cccccccccccccc
Q psy10545       1184 KIIKAGSKSFSSAI 1197 (1428)
Q Consensus      1184 ~GA~~sg~~~a~~i 1197 (1428)
                      +|+..++...+..+
T Consensus       466 ~g~~g~~~a~~~~~  479 (487)
T COG1233         466 PGVPGSAAAVALLI  479 (487)
T ss_pred             chhhhhHHHHHhhh
Confidence            99966555544443

>TIGR03464 HpnC squalene synthase HpnC

Probab=100.00  E-value=4.9e-44  Score=403.37  Aligned_cols=232  Identities=23%  Similarity=0.321  Sum_probs=217.8

Q ss_pred             cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545       1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus      1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
                      .+++++..+..++|++.|.++++||||||++|||+|++.. .+.       ...++|+||++.++..+.|.+ .||++.+
T Consensus         3 ~~~~sf~~a~~~lp~~~R~~~~alYAf~R~~Ddi~D~~~~-~~~-------~~~~~L~~wr~~l~~~~~g~~-~~pv~~a   73 (266)
T TIGR03464         3 AHYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGDG-SAE-------ERLALLDDFRAELDAIYSGEP-AAPVFVA   73 (266)
T ss_pred             CccCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccCCCC-ChH-------HHHHHHHHHHHHHHHHhCCCC-CChHHHH
Confidence            5778888899999999999999999999999999998521 112       245789999999998887754 8999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHH
Q psy10545       1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus      1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nil 1347 (1428)
                      |.++++++++|.++|.+||+||++|+...+|.|++||+.|||+|||+||+|+++++|..+++..+.|+++|+|||+||||
T Consensus        74 L~~~~~~~~l~~~~~~~li~~~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~~~~~~~~~A~~lG~AlQltniL  153 (266)
T TIGR03464        74 LARTVQRHGLPIEPFLDLLDAFRQDVVVTRYATWAELLDYCRYSANPVGRLVLDLYGASDPENVALSDAICTALQLINFW  153 (266)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             hcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhhh
Q psy10545       1348 RDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYRE 1427 (1428)
Q Consensus      1348 rd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~~ 1427 (1428)
                      ||++||+++||||||.|+|++||++++|+.+++.++++++++.+++++|+.||++|+.+++.+|.++++++..++.+|++
T Consensus       154 RDl~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~y~~  233 (266)
T TIGR03464       154 QDVGVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRLGLELALIVRGGLR  233 (266)
T ss_pred             HhhHHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy10545       1428 I 1428 (1428)
Q Consensus      1428 i 1428 (1428)
                      |
T Consensus       234 i  234 (266)
T TIGR03464       234 I  234 (266)
T ss_pred             H
Confidence            5

This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.

>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head

Probab=100.00  E-value=2.3e-43  Score=399.91  Aligned_cols=233  Identities=34%  Similarity=0.533  Sum_probs=220.0

Q ss_pred             cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545       1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus      1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
                      ..++++...+.++|++.|.++++||||||++|||+|+...+ +.       .+.++|+||++.+...+.+..+.||++.+
T Consensus         9 ~~~~sf~~a~~~lp~~~R~~~~alYaf~r~~Ddi~D~~~~~-~~-------~~~~~L~~w~~~l~~~~~~~~~~~pv~~a   80 (265)
T cd00683           9 KGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDPAAP-PD-------EKLALLDAFRAELDAAYWGGAPTHPVLRA   80 (265)
T ss_pred             HhCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhCCCCC-ch-------hHHHHHHHHHHHHHHHHcCCCCCChHHHH
Confidence            36788889999999999999999999999999999986422 12       35689999999999999888889999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCC-CccchHHHHHHHHHHHHHHHH
Q psy10545       1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGV-KEKDTLNCARNLGIAFQLTNI 1346 (1428)
Q Consensus      1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~-~~~~~~~~a~~~g~a~q~~ni 1346 (1428)
                      |.++++++++|.++|.+||+||++|++..+|+|++||+.|||+|||+||+|+++++|. .+++..+.|+++|+|||+|||
T Consensus        81 l~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~~~~~~~~~A~~lG~Alqltni  160 (265)
T cd00683          81 LADLARRYGIPREPFRDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGLMLLRVFGASSDEAALERARALGLALQLTNI  160 (265)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 567788999999999999999


Q ss_pred             HhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhh
Q psy10545       1347 SRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYR 1426 (1428)
Q Consensus      1347 lrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~ 1426 (1428)
                      |||++||+++||||||.|+|.+||++++++..+...+++++++.+++++|+.||.+|+.+++.+|+++++++.+++.+|+
T Consensus       161 lRdv~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~y~  240 (265)
T cd00683         161 LRDVGEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRFCVRAAAMLYR  240 (265)
T ss_pred             HHHHHHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hC
Q psy10545       1427 EI 1428 (1428)
Q Consensus      1427 ~i 1428 (1428)
                      +|
T Consensus       241 ~i  242 (265)
T cd00683         241 TI  242 (265)
T ss_pred             HH
Confidence            75

These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes

>PLN02632 phytoene synthase

Probab=100.00  E-value=2.7e-43  Score=406.12  Aligned_cols=233  Identities=28%  Similarity=0.425  Sum_probs=216.6

Q ss_pred             cccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHH
Q psy10545       1186 IKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAF 1265 (1428)
Q Consensus      1186 A~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~ 1265 (1428)
                      .-..++++...+.++|++.|.++++||||||++|||+|+...  +.       ....+|+||++.++.++.|.+ .||+.
T Consensus        56 ~r~~s~sFyla~~lLP~~~R~ai~alYAf~R~~DdI~D~~~~--~~-------~~~~~L~~w~~~l~~~~~g~~-~~pv~  125 (334)
T PLN02632         56 CAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNA--SH-------ITPAALDRWEARLEDLFDGRP-YDMLD  125 (334)
T ss_pred             HhhcCchHHHHHHhCCHHHHHHHHHHHHHHHHHhHHhcCCCC--Ch-------hhHHHHHHHHHHHHHHhCCCC-CChHH
Confidence            345788899999999999999999999999999999998532  22       234689999999999988754 79999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc------cchHHHHHHHHH
Q psy10545       1266 LALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE------KDTLNCARNLGI 1339 (1428)
Q Consensus      1266 ~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~------~~~~~~a~~~g~ 1339 (1428)
                      .+|.++++++++|.++|.+||+||++|+...+|.|++||+.|||+|||+||+|+++++|..+      +.+.+.|.+||+
T Consensus       126 ~aL~~~~~~~~L~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~A~~lG~  205 (334)
T PLN02632        126 AALADTVSKFPLDIQPFRDMIEGMRMDLVKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGI  205 (334)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999755      235789999999


Q ss_pred             HHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy10545       1340 AFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIV 1419 (1428)
Q Consensus      1340 a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~ 1419 (1428)
                      |||+|||||||+||+++||||||.|+|++||++++|+..+...+++.+++.+++++|+.||++|+.++..+|+++++++.
T Consensus       206 AlQltNILRDv~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r~~v~  285 (334)
T PLN02632        206 ANQLTNILRDVGEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASRWPVW  285 (334)
T ss_pred             HHHHHHHHHHHHHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q psy10545       1420 TSWSIYREI 1428 (1428)
Q Consensus      1420 ~a~~~y~~i 1428 (1428)
                      +++.+|++|
T Consensus       286 ~a~~~y~~i  294 (334)
T PLN02632        286 ASLLLYRQI  294 (334)
T ss_pred             HHHHHHHHH
Confidence            999999976

>TIGR03465 HpnD squalene synthase HpnD

Probab=100.00  E-value=4.5e-43  Score=396.52  Aligned_cols=231  Identities=30%  Similarity=0.428  Sum_probs=218.6

Q ss_pred             cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545       1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus      1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
                      ..|++++-++.++|++.|+++++||||||++|||+|+.  .++.       .++++|+||++.+..++.|. +.||++.+
T Consensus         3 ~~s~sF~~a~~~lp~~~R~~~~alYaf~r~~d~i~D~~--~~~~-------~~~~~L~~w~~~l~~~~~g~-~~~pv~~a   72 (266)
T TIGR03465         3 ASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDED--SDPE-------VAQAKLAWWRAEIDRLYAGA-PSHPVARA   72 (266)
T ss_pred             CCcCcHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhcCC--CCch-------HHHHHHHHHHHHHHHHhCCC-CCChHHHH
Confidence            47899999999999999999999999999999999984  2333       34689999999999888775 47999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHH
Q psy10545       1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus      1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nil 1347 (1428)
                      |.++++++++|.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|..++...+.|+++|+|||+||||
T Consensus        73 l~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~~~~~~~~a~~lG~Alqltnil  152 (266)
T TIGR03465        73 LADPARRFDLPQEDFLEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARIFGATDARTLEYAHHLGRALQLTNIL  152 (266)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             hcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhhh
Q psy10545       1348 RDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYRE 1427 (1428)
Q Consensus      1348 rd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~~ 1427 (1428)
                      ||++||+++||||||.|+|.+||++++|+..++.++++.+++.+++++|++||++|+.+++.+|++++.++..++.+|+.
T Consensus       153 Rdv~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~~~~~~~~~  232 (266)
T TIGR03465       153 RDVGEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMAAIYRA  232 (266)
T ss_pred             HHhHHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy10545       1428 I 1428 (1428)
Q Consensus      1428 i 1428 (1428)
                      |
T Consensus       233 i  233 (266)
T TIGR03465       233 L  233 (266)
T ss_pred             H
Confidence            5

The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.

>PLN02697 lycopene epsilon cyclase

Probab=100.00  E-value=2.6e-42  Score=419.32  Aligned_cols=303  Identities=19%  Similarity=0.253  Sum_probs=240.3

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCccccccccccccCccCccEEEcCCCcc
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR   85 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (1428)
                      ...||++||||||||+++|.+|++.  +++|++||+.... ..+||+|.++.   ....+++++.++|+.+.+++++.+.
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~~p~-~~n~GvW~~~l---~~lgl~~~i~~~w~~~~v~~~~~~~  179 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPF-TNNYGVWEDEF---KDLGLEDCIEHVWRDTIVYLDDDKP  179 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC--CCcEEEecCcccC-CCccccchhHH---HhcCcHHHHHhhcCCcEEEecCCce
Confidence            3469999999999999999999985  5899999986443 34699998754   3344678899999999999987544


Q ss_pred             c-cCccccceehhHHHHHHHHH---cC---------------CE---EE------Ee-----------------------
Q psy10545         86 K-IFSGYYSICSKHLNSYLIRA---LG---------------QQ---WN------LS-----------------------  114 (1428)
Q Consensus        86 ~-~~~~Y~~~~~~~~~~~~~~~---~~---------------~~---~~------~~-----------------------  114 (1428)
                      . +.++|..|++.+|.+.+.+.   .|               ..   +.      +.                       
T Consensus       180 ~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~  259 (529)
T PLN02697        180 IMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGP  259 (529)
T ss_pred             eeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCC
Confidence            3 58999999999999988762   01               10   00      00                       


Q ss_pred             ----------------cCCCCCceEeeeccc--------CCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHH
Q psy10545        115 ----------------SPHGLDIPIIMDATV--------NQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKS  170 (1428)
Q Consensus       115 ----------------~~~g~~~~~~MD~r~--------~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~  170 (1428)
                                      .+++.+.++|||||.        .|. ++++|+|+||++++++|||+|+|+..+.++.+.|+++
T Consensus       260 ~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~-~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~  338 (529)
T PLN02697        260 RVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEA-EYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKR  338 (529)
T ss_pred             CcccEEEEEEEEEecCCCCCcchheeeccccccccccccccC-CCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHH
Confidence                            011226799999995        354 6899999999999999999999988888899999999


Q ss_pred             HHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh----hcCC-
Q psy10545        171 IKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQ-  245 (1428)
Q Consensus       171 l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~----~~~~-  245 (1428)
                      |.+||+++||++++|+++|.|+|||+...+  ...++++.||.+||++||+|||+|.++++.|+.+|+.+.    .+.+ 
T Consensus       339 L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~--~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~  416 (529)
T PLN02697        339 LMSRLETMGIRILKTYEEEWSYIPVGGSLP--NTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSG  416 (529)
T ss_pred             HHHHHHhCCCCcceEEEEEeeeecCCCCCc--ccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccc
Confidence            999999999999999999999999976533  246789999999999999999999888887766666653    3321 


Q ss_pred             -----C-ChhHHHHHHH-HhHHHHHhHHHHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh
Q psy10545        246 -----I-NSTVLFKLVK-KFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS  317 (1428)
Q Consensus       246 -----~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~  317 (1428)
                           . ......+.|+ .|+.+.|++++|+ ++.+.+|..+++ +.++||++||+||+.+|.+||+++.+..|....|+
T Consensus       417 ~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~-~~g~~~l~~l~~~~~~~ff~~ff~L~~~~~~~Fl~~~l~~~~l~~~~~  495 (529)
T PLN02697        417 GKLGTSNSSNISMQAWNTLWPQERKRQRAFF-LFGLALILQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSSVDLILFAL  495 (529)
T ss_pred             cccccccchHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHhhHhhccCCHHHHHHHHH
Confidence                 0 1122235576 7889999999999 555555555555 99999999999999999999999999988765544


Q ss_pred             c
Q psy10545        318 G  318 (1428)
Q Consensus       318 g  318 (1428)
                      .
T Consensus       496 ~  496 (529)
T PLN02697        496 Y  496 (529)
T ss_pred             H
Confidence            3

>PLN02463 lycopene beta cyclase

Probab=100.00  E-value=8.6e-42  Score=410.03  Aligned_cols=306  Identities=17%  Similarity=0.265  Sum_probs=251.0

Q ss_pred             CCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEcCC
Q psy10545          4 EKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPK   82 (1428)
Q Consensus         4 ~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (1428)
                      +....||++||||||||+++|++|++.  +++|+|||+.+.. +++|||+|.++.   ....+.+++.++|+++.++.++
T Consensus        24 ~~~~~~DVvIVGaGpAGLalA~~La~~--Gl~V~liE~~~~~~~p~~~g~w~~~l---~~lgl~~~l~~~w~~~~v~~~~   98 (447)
T PLN02463         24 SKSRVVDLVVVGGGPAGLAVAQQVSEA--GLSVCCIDPSPLSIWPNNYGVWVDEF---EALGLLDCLDTTWPGAVVYIDD   98 (447)
T ss_pred             ccccCceEEEECCCHHHHHHHHHHHHC--CCeEEEeccCccchhccccchHHHHH---HHCCcHHHHHhhCCCcEEEEeC
Confidence            344579999999999999999999985  5899999998777 788999999855   3345677889999999998875


Q ss_pred             Cc-cccCccccceehhHHHHHHHHH---cCCE-----------------EEEe-----------------c---------
Q psy10545         83 FN-RKIFSGYYSICSKHLNSYLIRA---LGQQ-----------------WNLS-----------------S---------  115 (1428)
Q Consensus        83 ~~-~~~~~~Y~~~~~~~~~~~~~~~---~~~~-----------------~~~~-----------------~---------  115 (1428)
                      .. +.++++|+++++.+|++.+.+.   .|..                 +.++                 .         
T Consensus        99 ~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~  178 (447)
T PLN02463         99 GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPF  178 (447)
T ss_pred             CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCC
Confidence            33 3568999999999999988762   1110                 1110                 0         


Q ss_pred             CC-----------------CCCceEeeecccCCCCCC-----------ceEEEEccCCCCcEEEEEeeecCCCCCCHHHH
Q psy10545        116 PH-----------------GLDIPIIMDATVNQKNDE-----------YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDML  167 (1428)
Q Consensus       116 ~~-----------------g~~~~~~MD~r~~~~~~~-----------~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~  167 (1428)
                      .+                 ..+.++|||||.+|. ++           ++|+|+|||+++++|||+|++..++.++.+.+
T Consensus       179 ~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~-~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~l  257 (447)
T PLN02463        179 NPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHL-GNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDI  257 (447)
T ss_pred             CccceeeeeEEeecCCCCcccccchhhhcChhhc-cccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHH
Confidence            01                 125689999998875 32           78999999999999999999998888899999


Q ss_pred             HHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh----hc
Q psy10545        168 KKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TT  243 (1428)
Q Consensus       168 ~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~----~~  243 (1428)
                      +++|++||+.+|+++++|.++|.|+|||+...+.  ..++++.||.+||++||+|||+|.++++.++.+|+++.    .+
T Consensus       258 k~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~--~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~  335 (447)
T PLN02463        258 QERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPV--IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSS  335 (447)
T ss_pred             HHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCC--CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999877442  35789999999999999999999999999988777764    33


Q ss_pred             CC--CChhHHH-HHHH-HhHHHHHhHHHHHHHHHHHhhcccCcchHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh
Q psy10545        244 NQ--INSTVLF-KLVK-KFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS  317 (1428)
Q Consensus       244 ~~--~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~  317 (1428)
                      ..  ++...++ +.|. .|.....+++.||+|....||+...++.++||++||+||+..|.+||+++.+..+....|+
T Consensus       336 ~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~gfl~~~~~~~~l~~~~~  413 (447)
T PLN02463        336 RSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLLFGL  413 (447)
T ss_pred             CCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHccccccCCCChHHHHHHHH
Confidence            33  3444444 4576 7888999999999998888888877899999999999999999999999999877654443

>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]

Probab=100.00  E-value=1.9e-39  Score=361.17  Aligned_cols=233  Identities=30%  Similarity=0.435  Sum_probs=209.3

Q ss_pred             ccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC-CCcHHH
Q psy10545       1187 KAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK-MKEPAF 1265 (1428)
Q Consensus      1187 ~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~p~~ 1265 (1428)
                      -..++++.-.++++|+++|+++++||||||++|||+|++..  +..      ..+.++.||++.. ..+.+.+ ++||+.
T Consensus        18 ~~~srtf~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~--~~~------~~e~~~~~~~~~~-~~~~~~~~~~~pv~   88 (288)
T COG1562          18 RETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDGVSD--PDL------PAEILLAWRRELD-GDFSGQPASDHPVL   88 (288)
T ss_pred             HHhCcchHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccc--hhh------HHHHHHHHHHHHh-ccccCCCcccCHHH
Confidence            34678899999999999999999999999999999999743  311      2345555665544 3444543 679999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc-cchHHHHHHHHHHHHHH
Q psy10545       1266 LALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE-KDTLNCARNLGIAFQLT 1344 (1428)
Q Consensus      1266 ~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~-~~~~~~a~~~g~a~q~~ 1344 (1428)
                      .+|.++++++++|.++|.+||+||++|+...+|.+++||+.||++|||+||+|++.|++..+ ....+.|..+|.|+|+|
T Consensus        89 ~al~~~~~~~~~~~~~~~~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~l~~~Il~~~~~~~~~~~a~~lG~A~Qlv  168 (288)
T COG1562          89 AALVEVARRFGLPREAFPALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGLLLARILGPDKDAATRAYARGLGLALQLV  168 (288)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHhHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999864 33567788899999999


Q ss_pred             HHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q psy10545       1345 NISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSI 1424 (1428)
Q Consensus      1345 nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~ 1424 (1428)
                      |||||++||...||+|||+|+|.+||++.+|+..+.+.+.+++++..++.+|++|+..|+.+++.+|.++++++.+++.+
T Consensus       169 NilRdv~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~~~~~~~~~~~  248 (288)
T COG1562         169 NILRDVGEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRAQLAVLAAALL  248 (288)
T ss_pred             HHHHHhHHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCccccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhC
Q psy10545       1425 YREI 1428 (1428)
Q Consensus      1425 y~~i 1428 (1428)
                      |..|
T Consensus       249 ~~~~  252 (288)
T COG1562         249 YAYL  252 (288)
T ss_pred             HHHH
Confidence            9753

>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2

Probab=100.00  E-value=1.7e-39  Score=370.47  Aligned_cols=231  Identities=32%  Similarity=0.494  Sum_probs=203.3

Q ss_pred             ccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhc-----CCCCCcH
Q psy10545       1189 GSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACI-----GFKMKEP 1263 (1428)
Q Consensus      1189 sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~p 1263 (1428)
                      +++++.-+++++|++.|+++++||||||++|||+|+..  ++.       ...++|+||++.+...+.     +..+.||
T Consensus         4 ~~~sf~~a~~~lP~~~R~~~~alyaf~r~~d~i~D~~~--~~~-------~~~~~L~~w~~~l~~~~~~~~~~~~~~~~p   74 (267)
T PF00494_consen    4 HSRSFYLASLLLPKEKRPAVFALYAFCRELDDIVDEPS--DPE-------EARARLQWWRDALNSIFASYEDSLPEPSHP   74 (267)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHCTS--S-H-------SCHHHHHHHHHHHHHHHH-TSTHHHSSHHH
T ss_pred             CCccHHHHHHHCCHHHHHHHHHHHHHHHHHhhccccch--hhH-------HHHHHHHHHHHHHHHHhhhhhhccCCCcCH
Confidence            46678888999999999999999999999999999964  333       235799999999998883     3356799


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc-c-chHHHHHHHHHHH
Q psy10545       1264 AFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE-K-DTLNCARNLGIAF 1341 (1428)
Q Consensus      1264 ~~~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~-~-~~~~~a~~~g~a~ 1341 (1428)
                      ++.+|.++++.++++.++|.+||+||++|+..++|+|++||+.|||+|||+||+|++++++..+ . ++.+.|+++|.|+
T Consensus        75 v~~~l~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~~~~~~~~a~~lG~al  154 (267)
T PF00494_consen   75 VARALADLVRRYGLPREPLLELIDGMEMDLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDPDEAARDAARALGRAL  154 (267)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHCTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999943 3 5789999999999


Q ss_pred             HHHHHHhcchhh-hcCCceeecHHHHHhcCCCcccccccc-chHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccchHHH
Q psy10545       1342 QLTNISRDVIDD-FYVGRCYLPLDWLRNEGLNKSNFVLAE-NRKKLFKVVTRILDVAEFYYSSSLVKLNTL-PLRSTLAI 1418 (1428)
Q Consensus      1342 q~~nilrd~~~d-~~~gR~ylP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~l-p~~~~~a~ 1418 (1428)
                      |+||||||+++| +.+||||||.|+|.+||++++|+..+. .++++++++.+++.+|++||++|+.++..+ |+++++++
T Consensus       155 ql~nilRd~~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~~~~~~~  234 (267)
T PF00494_consen  155 QLTNILRDIPEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPPRARPAV  234 (267)
T ss_dssp             HHHHHHHTHHHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--TTHHHHH
T ss_pred             HHHHHHHHhHHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhhhHHH
Confidence            999999999999 899999999999999999999998876 777799999999999999999999999999 77899999


Q ss_pred             HHHHHHhhhC
Q psy10545       1419 VTSWSIYREI 1428 (1428)
Q Consensus      1419 ~~a~~~y~~i 1428 (1428)
                      .+++.+|+.|
T Consensus       235 ~~~~~~~~~~  244 (267)
T PF00494_consen  235 AAAAALYRAI  244 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....

>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase

Probab=100.00  E-value=1.4e-38  Score=362.04  Aligned_cols=221  Identities=20%  Similarity=0.234  Sum_probs=185.1

Q ss_pred             cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHH---hcC--CCCCc
Q psy10545       1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRA---CIG--FKMKE 1262 (1428)
Q Consensus      1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~--~~~~~ 1262 (1428)
                      ..|++++..+++||+++|.+|+++|+|||.+|||+|++..+...        ....+++|.+.+...   +.+  .+...
T Consensus        11 ~~SrSF~~ai~~Lp~~lR~aV~~~Yl~cR~~DdIeDd~~~~~~~--------kl~~l~~~~~~l~~~~~~~~~~~~~~~~   82 (336)
T TIGR01559        11 LTSRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDMTISVDK--------KIPLLRDFHEKIYDPDWRFTESDNEKDR   82 (336)
T ss_pred             hcCccHHHHHHHcCHHHHHHHHHHHHHHHhccccccCCCCCHHH--------HHHHHHHHHHHHhccCcccCCCCChhhH
Confidence            47899999999999999999999999999999999986532211        122345555544321   111  12234


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHH--------HHHHhhccCCCC--CCHHHHHHHHHHHhHHHHHHHHHhhCC---Ccc-
Q psy10545       1263 PAFLALQKIISIHSFPVHLLFEHL--------DGFEMDVMERTY--ITLDETLGYCYHVAGTIGLIIAHLIGV---KEK- 1328 (1428)
Q Consensus      1263 p~~~~l~~~~~~~~l~~~~~~~li--------~~~~~dl~~~~~--~t~~~l~~Y~~~vag~vg~~~~~~~~~---~~~- 1328 (1428)
                      +++..+..+...+....++++++|        +||++|+....|  +|++||+.|||+|||+||+|+++|++.   .++ 
T Consensus        83 ~L~~~~~~v~~~~~~l~~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~~~~~~~~  162 (336)
T TIGR01559        83 QVLDDFPVVSLEFLKLKPKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGFEDPS  162 (336)
T ss_pred             HHHHhchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhhcCCCCcc
Confidence            566677777777766666688888        999999999999  999999999999999999999999954   333 


Q ss_pred             --chHHHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10545       1329 --DTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVK 1406 (1428)
Q Consensus      1329 --~~~~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 1406 (1428)
                        +..+.|++||+|||+||||||+.||+++||+|||+|+|.+||++.+|+..+++.+++.+++++|+.+|+.||++|+.|
T Consensus       163 ~~~~~~~A~~lG~aLQlTNIlRDv~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~y  242 (336)
T TIGR01559       163 LGESEALSNSMGLFLQKTNIIRDYLEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTY  242 (336)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              247899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccchH
Q psy10545       1407 LNTLPLRSTL 1416 (1428)
Q Consensus      1407 ~~~lp~~~~~ 1416 (1428)
                      +..|+..+.+
T Consensus       243 l~~l~~~~~~  252 (336)
T TIGR01559       243 LSRLRDQSIF  252 (336)
T ss_pred             HHhCCCcchh
Confidence            9999877744

This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.

>KOG4254|consensus

Probab=100.00  E-value=1.8e-36  Score=334.72  Aligned_cols=474  Identities=20%  Similarity=0.271  Sum_probs=310.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC--c-hHHHHHHHHhcccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD--P-NSIKLLFDLSKNRM  784 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~--~-~~~~~l~~~lG~~l  784 (1428)
                      ...+|++|||+|+.||+||.+|++.|.+|.|+|++...||-+-+.. ..||.|+.+...+..  | ..-.-.+++.|..+
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l   91 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRL   91 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhh
Confidence            3579999999999999999999999999999999977777666554 689999887765431  1 11111223333222


Q ss_pred             cccceEEecCCceEEEeCCC---cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH---
Q psy10545        785 ENYVNLLPIKPFYRLYWGKE---KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN---  858 (1428)
Q Consensus       785 ~~~l~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  858 (1428)
                      ..      .++.......++   ....+..+.+....++.++...+...+.+|-+.+.+++.. +.+..+..+....   
T Consensus        92 ~~------r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~-~~pl~d~~~~~~~~~~  164 (561)
T KOG4254|consen   92 HE------RSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGA-IDPLLDAAPADPPLFI  164 (561)
T ss_pred             cc------CCCccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhc-cchhhhccccccchhh
Confidence            11      111111111111   1111222333333346666655544444444444444443 2222221111110   


Q ss_pred             -----HHHHhh----H-------------HHHhhcccCCHHHHHHhhcCCHHHHHH--HHhhcccccCCCCchhH----H
Q psy10545        859 -----DMLFIL----P-------------KLIKIKAWKSVYSIVSQFIKNDYLKQA--FSFNSLFIGGNPFSTSS----I  910 (1428)
Q Consensus       859 -----~~~~~~----~-------------~~~~~~~~~s~~~~l~~~~~~~~l~~~--l~~~~~~~g~~p~~~s~----~  910 (1428)
                           .+....    +             .+..+ ........+..++..+.++..  .+...+.. .++.....    +
T Consensus       165 ~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~-~~ap~~k~~~~~fesk~~ka~l~tDavi~~~-asv~~pgt~yvll  242 (561)
T KOG4254|consen  165 HGLLLVLYTLASTYAPLLLAGFIKMKPLGALYEL-LLAPISKVLNDWFESKDLKATLATDAVIGLL-ASVHTPGTGYVLL  242 (561)
T ss_pred             hhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHH-HhcchhhHHhhhhhccchhhhhhHHHHHHhh-cccCCCCcHHHHH
Confidence                 000000    0             00000 122333344444444444332  23222222 12222211    2


Q ss_pred             HHHHHHhcc-ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        911 YTLIHALEY-EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       911 ~~~~~~~~~-~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ..++..++. .+++.||.||++.++.++++.++++|++|.+++.|++|..++|++++|+++||+++.++.||++++++.+
T Consensus       243 h~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T  322 (561)
T KOG4254|consen  243 HHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT  322 (561)
T ss_pred             HHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence            223322333 3456699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCChhHHHHHhhcCCCCceEE----EEEeecCCc-CCCcce--EEEcCCChHHHHHHHh---cCCCCCCCce
Q psy10545        990 YRNLLGQYAFGKKKYMNLIKKKMSNSLFV----IYFGLSEQY-THLAHH--TIFFPSNYKKSIENIF---GKNFSRDNLS 1059 (1428)
Q Consensus       990 ~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~----v~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1059 (1428)
                      +.+|++.+.+|.+.  .++++.+..++.+    .++..+..- .+++||  .+.+..+........+   .++.....|.
T Consensus       323 f~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pv  400 (561)
T KOG4254|consen  323 FEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPV  400 (561)
T ss_pred             HHHhCCCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCe
Confidence            99999999999886  5556554433332    344433331 124555  4445444333333332   2455557799


Q ss_pred             EEEEeCCCCCCCCCCCCccEEEEEEec-CCCCCC-CC-CcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHH
Q psy10545       1060 IYLHSPSVTDLSLAPTGCSTFYALIPV-PNLSNS-SI-NWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKD 1136 (1428)
Q Consensus      1060 ~~v~~~s~~d~s~ap~G~~~l~v~~~~-p~~~~~-~~-~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~ 1136 (1428)
                      +++++||..||+++|+|++++.+++.. |....+ .. +++..++++++++++.+++ ++|++++.++..++.||.|.++
T Consensus       401 I~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~-l~Pgfsssv~~~dvgTP~t~qr  479 (561)
T KOG4254|consen  401 IELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEK-LAPGFSSSVESYDVGTPPTHQR  479 (561)
T ss_pred             EEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHH-HcCCccceEEEEecCCCchhhH
Confidence            999999999999999999999999876 333221 11 3455678999999999998 9999999999999999999999


Q ss_pred             HhCCCCCcccccccccccccccCCCC-----CCCCCCceEEecCCccCCCCccccccccccccccc
Q psy10545       1137 VLGSYLGSAFSFAPLLTQSAWFRPHN-----RDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus      1137 ~~~~~~G~~~g~~~~~~q~~~~rp~~-----~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i 1197 (1428)
                      ++..++|++++.+....+....||..     +|| ++|||+||+.++||+||.|+  .|+.+|...
T Consensus       480 ~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tP-I~~LYlcGs~afPGgGV~a~--aG~~~A~~a  542 (561)
T KOG4254|consen  480 FLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTP-IPGLYLCGSGAFPGGGVMAA--AGRLAAHSA  542 (561)
T ss_pred             HhcCCCCcccCcccccccccccCCccccccCCCC-CCceEEecCCCCCCCCcccc--chhHHHHHH
Confidence            99999999999888888777788876     787 99999999999999999888  377776554

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=100.00  E-value=1.1e-36  Score=361.11  Aligned_cols=343  Identities=34%  Similarity=0.606  Sum_probs=291.4

Q ss_pred             HHHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      |++|+|+|++|++.|.+|+++  |++|+|+|+.+..                                            
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~--------------------------------------------   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI--------------------------------------------   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC--------------------------------------------
Confidence            568999999999999999987  9999999987643                                            


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEII  470 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i  470 (1428)
                        ..+++|++|..++.+....++++++...|+.+.+.++........+|++|+|.+|++.|.+++.. + ++.+++|+.+
T Consensus        37 --~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~-~-i~~~~~V~~v  112 (370)
T TIGR01789        37 --GGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPE-G-VILGRKAVGL  112 (370)
T ss_pred             --CCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCCCceEEEHHHHHHHHHHhhcc-c-EEecCEEEEE
Confidence              13468999987665544556778888999999999987666677899999999999999988754 3 5568899999


Q ss_pred             eCCeEEEcCCcEEEeeEEEecCCCCCCC-CCcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCce
Q psy10545        471 TPTSIRINNKKIINANCIIDGRGLKNSQ-FDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSL  549 (1428)
Q Consensus       471 ~~~~v~l~~g~~~~a~lvI~AdG~~S~~-~~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~  549 (1428)
                      +.+.|++.||++++|++||+|||.+|.+ ....+|+|.|++++++.||+.+.+++||++.++. +|++|+|+||++++++
T Consensus       113 ~~~~v~l~dg~~~~A~~VI~A~G~~s~~~~~~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~-~g~~F~Y~lP~~~~~~  191 (370)
T TIGR01789       113 DADGVDLAPGTRINARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPHGLENPIIMDATVDQL-AGYRFVYVLPLGSHDL  191 (370)
T ss_pred             eCCEEEECCCCEEEeeEEEECCCCCCCccccceeeEEEEEEEEEcCCCCCCccEEEeeeccCC-CCceEEEECcCCCCeE
Confidence            8777888999999999999999999753 3357899999999999998888999999998765 7899999999999999


Q ss_pred             EEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCC---chhhhhccCcccccccccccccCCCCCh
Q psy10545        550 MIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALK---NEKIIKFKKTICVGLRANLLHATTGYSL  626 (1428)
Q Consensus       550 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~---~~~~~~~~rv~lvGdAA~~vhP~~G~G~  626 (1428)
                      +||.|.++..+.++.+.+++.|.+|+...++..+++++.|.+++||...   .+.....++++++|||||.+||+|||||
T Consensus       192 lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~  271 (370)
T TIGR01789       192 LIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSL  271 (370)
T ss_pred             EEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccH
Confidence            9999999998888999999999999988899999999999999999664   2211124669999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc-cCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccc-cHHHHHHHhhcCChhHhhhhcc
Q psy10545        627 PIAIQLAENIAKYSI-TTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYA  704 (1428)
Q Consensus       627 ~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~~~~~~~~~~~~~~~l~~f~~  704 (1428)
                      +.+++.|+.|+++.. ++.     .+.+....|...+|++..++++++++|.....+ .+..+|.++|++|...+.+|++
T Consensus       272 ~~a~~~a~~la~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~  346 (370)
T TIGR01789       272 PVAVENADALAAQPDLSSE-----QLAAFIDSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYA  346 (370)
T ss_pred             HHHHHHHHHHHhccCcCcc-----chhhhhhHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHHHHHHHHh
Confidence            999999999998875 221     222344667888888899999999999976666 5599999999999999999999


Q ss_pred             Ccccc
Q psy10545        705 NKLSF  709 (1428)
Q Consensus       705 ~~~~~  709 (1428)
                      ++++.
T Consensus       347 ~~~~~  351 (370)
T TIGR01789       347 ARSNT  351 (370)
T ss_pred             cCCCH
Confidence            98874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=100.00  E-value=5.5e-37  Score=371.53  Aligned_cols=310  Identities=28%  Similarity=0.411  Sum_probs=255.2

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEc-CCCcccc
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKF-PKFNRKI   87 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~   87 (1428)
                      |++||||||||+++|++|++.  +++|+|||+++.. +++|||+|..++++.   .+++++.+.|+++.++. ++....+
T Consensus         1 DviIiGaG~AGl~~A~~la~~--g~~v~liE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   75 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP--GLRVQLIEPHPPIPGNHTYGVWDDDLSDL---GLADCVEHVWPDVYEYRFPKQPRKL   75 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCCCccccccHhhhhhh---chhhHHhhcCCCceEEecCCcchhc
Confidence            899999999999999999875  5899999999888 899999999866433   36788889999965444 5445567


Q ss_pred             CccccceehhHHHHHHHHH------------------c-CCEEEE--------e--------------------------
Q psy10545         88 FSGYYSICSKHLNSYLIRA------------------L-GQQWNL--------S--------------------------  114 (1428)
Q Consensus        88 ~~~Y~~~~~~~~~~~~~~~------------------~-~~~~~~--------~--------------------------  114 (1428)
                      +++|.++++.+|.+++.+.                  . +..+.+        +                          
T Consensus        76 ~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q  155 (388)
T TIGR01790        76 GTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQ  155 (388)
T ss_pred             CCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEE
Confidence            8999999999999999762                  0 111100        0                          


Q ss_pred             -----------cCCCCCceEeeecccCCCCC-----C--ceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHH
Q psy10545        115 -----------SPHGLDIPIIMDATVNQKND-----E--YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAI  176 (1428)
Q Consensus       115 -----------~~~g~~~~~~MD~r~~~~~~-----~--~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~  176 (1428)
                                 .++..+.+++|||+.+|. .     +  ++|+|+||+++++++||+|.|+..+.++.+.++++|.+|++
T Consensus       156 ~~~G~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~  234 (388)
T TIGR01790       156 VAYGVEARLSRPPHGPSSMVIMDARVDQL-AAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLN  234 (388)
T ss_pred             EEEEEEEEEcCCCCCCCceEEEecccccc-ccccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHH
Confidence                       011225679999998874 2     2  34999999999999999999999887789999999999999


Q ss_pred             HcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q psy10545        177 KNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVK  256 (1428)
Q Consensus       177 ~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~  256 (1428)
                      +.|+..++++++|.|+|||....+.  ..++++.||.|||++||+|||+|..+++.+..+|+.+.+..........+.|+
T Consensus       235 ~~g~~~~~i~~~~~~~iP~~~~~~~--~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~  312 (388)
T TIGR01790       235 AQGWQIKTIEEEEWGALPVGLPGPF--LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWD  312 (388)
T ss_pred             HcCCeeeEEEeeeeEEEecccCCCc--cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            9999999999999999999877443  45689999999999999999999999999999999995433222334445577


Q ss_pred             HhHHHHHhHHHHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh---cCCchHHHHH
Q psy10545        257 KFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS---GAGIGGIALA  327 (1428)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~---g~~~~~~~~a  327 (1428)
                      ...+..+.++++++++++.+|....+ ++.+||++||++|+++|.|||++++++.|..+||.   |.+|+++..+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (388)
T TIGR01790       313 GLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSA  387 (388)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhCcCChhhhhc
Confidence            66666777788889999999877777 99999999999999999999999999999999999   8999988654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=100.00  E-value=2.1e-35  Score=352.24  Aligned_cols=344  Identities=24%  Similarity=0.383  Sum_probs=284.1

Q ss_pred             HHHHhcCCchHHHHHHHH--hhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        313 IRIFSGAGIGGIALAIRL--QTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~L--a~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      |+||+|+||+|++.|.+|  ++.|++|+|||+++...+++                                        
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~----------------------------------------   40 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPN----------------------------------------   40 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccC----------------------------------------
Confidence            578999999999999999  88999999999887653333                                        


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccc-ccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINNFLFNNKTVEI  469 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~  469 (1428)
                          +++|++|..++     .++++++.+.|+++.+.++..+.... .+|++|+|.+|++.|.+++...++++.+++|++
T Consensus        41 ----~~tW~~~~~~~-----~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~  111 (374)
T PF05834_consen   41 ----DRTWCFWEKDL-----GPLDSLVSHRWSGWRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTS  111 (374)
T ss_pred             ----Ccccccccccc-----cchHHHHheecCceEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEE
Confidence                35899998633     33678888999999999988766544 488999999999999999995567888899999


Q ss_pred             EeCCe----EEEcCCcEEEeeEEEecCCCCCC-CCCcceEEEEEEEEEecCC-cCCCCceEEecccCCCCCcceEEEEee
Q psy10545        470 ITPTS----IRINNKKIINANCIIDGRGLKNS-QFDGIYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLP  543 (1428)
Q Consensus       470 i~~~~----v~l~~g~~~~a~lvI~AdG~~S~-~~~~~~q~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~f~~~lP  543 (1428)
                      |+...    |++++|.+++|++||||||..+. .....+|+|.|++++++.| ++...+.+||++.++..++++|+|+||
T Consensus       112 i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP  191 (374)
T PF05834_consen  112 IEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLP  191 (374)
T ss_pred             EEecCceEEEEECCCCEEEeeEEEECCCcccccccccccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEE
Confidence            97543    68889999999999999997755 3456789999999999988 778899999999776557899999999


Q ss_pred             CCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCC
Q psy10545        544 LTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTG  623 (1428)
Q Consensus       544 l~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G  623 (1428)
                      +++++++||.|.++....++.+.+++.+.+++...|+...+++++|.|+|||..........++++.+|+|||.+||+||
T Consensus       192 ~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTG  271 (374)
T PF05834_consen  192 FSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTG  271 (374)
T ss_pred             cCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCccc
Confidence            99999999999999998789999999999999999999999999999999995433332356789999999999999999


Q ss_pred             CChHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccc-ccHHHHHHHhhcCChhHhhhh
Q psy10545        624 YSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNS-RCHLDIMQYFYTLPDKIIRNF  702 (1428)
Q Consensus       624 ~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~l~~f  702 (1428)
                      |+|..+++.+..|++++..+.. ..   ......+...+++...+++.|...+..... .....+|..++.++...+.+|
T Consensus       272 Ys~~~~~~~a~~ia~~l~~~~~-~~---~~~~~~~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~F  347 (374)
T PF05834_consen  272 YSFARIQRQADAIADALAKGGA-PL---RAWSPLWPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARF  347 (374)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc-cc---cccccccHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhH
Confidence            9999999999999998875211 11   111222456677777788777644444444 467889999999999999999


Q ss_pred             ccCcccc
Q psy10545        703 YANKLSF  709 (1428)
Q Consensus       703 ~~~~~~~  709 (1428)
                      ++++++.
T Consensus       348 L~~~~~~  354 (374)
T PF05834_consen  348 LSERSSL  354 (374)
T ss_pred             hcCCCCH
Confidence            9998874

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02697 lycopene epsilon cyclase

Probab=99.97  E-value=2.2e-30  Score=315.29  Aligned_cols=346  Identities=18%  Similarity=0.264  Sum_probs=262.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .+|++|+|+||+|+++|.+|+++|++|+|||+...  +.+            ..|++...+.                  
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p--~~~------------n~GvW~~~l~------------------  155 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--FTN------------NYGVWEDEFK------------------  155 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc--CCC------------ccccchhHHH------------------
Confidence            46899999999999999999999999999997532  111            2334332110                  


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccc-ccccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRK-IFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEI  469 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~  469 (1428)
                                         ...+.+++...|....+.++..... ....|..|+|..|++.|.+++.+.|+.+.+++|+.
T Consensus       156 -------------------~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~  216 (529)
T PLN02697        156 -------------------DLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDR  216 (529)
T ss_pred             -------------------hcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEE
Confidence                               0112233445566666777654332 34456679999999999999988785457788988


Q ss_pred             EeC--Ce---EEEcCCcEEEeeEEEecCCCCCCCC--------CcceEEEEEEEEEecC-CcCCCCceEEecccC-----
Q psy10545        470 ITP--TS---IRINNKKIINANCIIDGRGLKNSQF--------DGIYQIFLGQQWNLSS-PHGLDIPIIMDATVN-----  530 (1428)
Q Consensus       470 i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~~~--------~~~~q~~~g~~~~~~~-~~~~~~~~~~~~~~~-----  530 (1428)
                      +..  +.   +++.+|.+++|++||+|||..|...        ....|.+.|++++++. |++.+..++||++..     
T Consensus       217 I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~  296 (529)
T PLN02697        217 ITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKV  296 (529)
T ss_pred             EEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeecccccccccc
Confidence            863  22   3566788999999999999998411        1237999999999975 566667899998742     


Q ss_pred             --CCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCc
Q psy10545        531 --QKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKT  608 (1428)
Q Consensus       531 --~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv  608 (1428)
                        .+.++++|+|++|+++++++||.|.+...+.++.+.++++|.+++...|+...++.++|.+.|||....+.  ..+++
T Consensus       297 ~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~--~~~~v  374 (529)
T PLN02697        297 SHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPN--TEQKN  374 (529)
T ss_pred             ccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCcc--cCCCe
Confidence              12246889999999999999999998777777889999999999998899888999999999999876554  35899


Q ss_pred             ccccccccccccCCCCCh----HHHHHHHHHHHhhcccCC--------CCChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545        609 ICVGLRANLLHATTGYSL----PIAIQLAENIAKYSITTN--------QINSTVLFKLVKKFIINHQKKQRFFCMLNRLF  676 (1428)
Q Consensus       609 ~lvGdAA~~vhP~~G~G~----~~a~~la~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f  676 (1428)
                      ++||||||++||+|||||    ..|...|+.+++++..+.        +.+...+..+-..|..+++++..++.....+|
T Consensus       375 l~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l  454 (529)
T PLN02697        375 LAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI  454 (529)
T ss_pred             eEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            999999999999999998    466677777777776543        12223333344448899999999886654444


Q ss_pred             hhcccccHHHHHHHhhcCChhHhhhhccCcccc
Q psy10545        677 FLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSF  709 (1428)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~  709 (1428)
                      ..-.......+|..||++|...+..|++.+.+.
T Consensus       455 ~~l~~~~~~~ff~~ff~L~~~~~~~Fl~~~l~~  487 (529)
T PLN02697        455 LQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSS  487 (529)
T ss_pred             HCCCHHHHHHHHHHHHCCCHHHHhhHhhccCCH
Confidence            444445678899999999999999999998763

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.97  E-value=2.5e-29  Score=304.61  Aligned_cols=347  Identities=27%  Similarity=0.439  Sum_probs=258.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      |+||+|+||+|+++|..|+++|++|+|||+++....                                            
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~--------------------------------------------   36 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG--------------------------------------------   36 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC--------------------------------------------
Confidence            568999999999999999999999999998865411                                            


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccE-EEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQ-VKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~  471 (1428)
                        ...|++|...+..   ..+..+..+.|.... +.++........+|++++|..|++.|.+++.+.|..+...+|.++.
T Consensus        37 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~  111 (388)
T TIGR01790        37 --NHTYGVWDDDLSD---LGLADCVEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAE  111 (388)
T ss_pred             --CccccccHhhhhh---hchhhHHhhcCCCceEEecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEE
Confidence              1234555432211   112334445666533 3334333444567888999999999999998777444566788776


Q ss_pred             CC-e----EEEcCCcEEEeeEEEecCCCCCC------CCCcceEEEEEEEEEecCC-cCCCCceEEecccCCCC-C---c
Q psy10545        472 PT-S----IRINNKKIINANCIIDGRGLKNS------QFDGIYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKN-D---E  535 (1428)
Q Consensus       472 ~~-~----v~l~~g~~~~a~lvI~AdG~~S~------~~~~~~q~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~---g  535 (1428)
                      .+ .    |++.+|.+++|++||+|||.+|.      ......|++.|+++++..+ ++....++|++...+.+ .   +
T Consensus       112 ~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  191 (388)
T TIGR01790       112 ADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKG  191 (388)
T ss_pred             ecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccC
Confidence            43 1    66677889999999999999972      1223568999999998754 55567789998755431 1   2


Q ss_pred             c--eEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcccccc
Q psy10545        536 Y--HFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGL  613 (1428)
Q Consensus       536 ~--~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGd  613 (1428)
                      .  .|+|+||+++++++++.+.++.....+.+.+++.+.++++..++..+++++.+.+.+||......  ..+|+++|||
T Consensus       192 ~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~~~~--~~~rv~liGd  269 (388)
T TIGR01790       192 YRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPGPF--LPQRVAAFGA  269 (388)
T ss_pred             CCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccCCCc--cCCCeeeeec
Confidence            3  49999999999999998888776666788999999999988888888888888999999887554  5689999999


Q ss_pred             cccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccc-ccHHHHHHHhh
Q psy10545        614 RANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNS-RCHLDIMQYFY  692 (1428)
Q Consensus       614 AA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~~~~~~~~~  692 (1428)
                      |||++||+|||||+.+++.+..+++.+.+....+....++.|+++...++++..+++++.+++..... .....+|.++|
T Consensus       270 AAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~  349 (388)
T TIGR01790       270 AAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFF  349 (388)
T ss_pred             hhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999888888887777643222223445556666555566666666776666665555 36788999999


Q ss_pred             cCChhHhhhhccCccccc
Q psy10545        693 TLPDKIIRNFYANKLSFF  710 (1428)
Q Consensus       693 ~~~~~~l~~f~~~~~~~~  710 (1428)
                      +++...+.+|++++++..
T Consensus       350 ~~~~~~~~~fl~~~~~~~  367 (388)
T TIGR01790       350 GLPEELWERFLAARLSLP  367 (388)
T ss_pred             CCCHHHHhhhhcCCCCHH
Confidence            999999999999988753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07233 hypothetical protein; Provisional

Probab=99.97  E-value=1.9e-28  Score=302.29  Aligned_cols=415  Identities=16%  Similarity=0.156  Sum_probs=267.8

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccceEE
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNLL  791 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~  791 (1428)
                      +|+|||||++||+||+.|+++|++|+|||+++++||++++++.+|+.+|.|.|++.. ...+.++++++|++  +.+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~--~~~~~~   78 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE--DKLRWR   78 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC--Cceeec
Confidence            589999999999999999999999999999999999999999999999999998864 44678899999853  222222


Q ss_pred             ecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhhc
Q psy10545        792 PIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIK  871 (1428)
Q Consensus       792 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (1428)
                        .....+.+ +|..+++. +...    +.++.....      .+.+...... .. . ..           .... ...
T Consensus        79 --~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~~------~~~~~~~~~~-~~-~-~~-----------~~~~-~~~  129 (434)
T PRK07233         79 --ETKTGYYV-DGKLYPLG-TPLE----LLRFPHLSL------IDKFRLGLLT-LL-A-RR-----------IKDW-RAL  129 (434)
T ss_pred             --cCceEEEE-CCeEecCC-CHHH----HHcCCCCCH------HHHHHhHHHH-Hh-h-hh-----------cccc-ccc
Confidence              22222333 34433332 1111    111111000      0000000000 00 0 00           0000 011


Q ss_pred             ccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH--HHHHhc-c-----ccceeeecCchHHHHHHHHHHHH
Q psy10545        872 AWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT--LIHALE-Y-----EWGIWFPKGGVGALIKALIKLFQ  942 (1428)
Q Consensus       872 ~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~--~~~~~~-~-----~~g~~~~~gG~~~l~~~L~~~l~  942 (1428)
                      +..++.+|+.+++.++..+.++.. ....++.++.+.++...  .+.... .     ..+.++++||++.++++|++.++
T Consensus       130 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  209 (434)
T PRK07233        130 DKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE  209 (434)
T ss_pred             ccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence            358899999998877777777764 34556778888776322  221111 0     12366899999999999999999


Q ss_pred             HcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEe
Q psy10545        943 NLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFG 1022 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~ 1022 (1428)
                      +.|++|++|++|++|..++++++.+. .+|+++.||+||+|+|+..+.. ++++  .+....+.++++.+. +.+++++.
T Consensus       210 ~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~-ll~~--~~~~~~~~~~~~~~~-~~~~~~l~  284 (434)
T PRK07233        210 ARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPPPILAR-LVPD--LPADVLARLRRIDYQ-GVVCMVLK  284 (434)
T ss_pred             hcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCHHHHHh-hcCC--CcHHHHhhhcccCcc-ceEEEEEE
Confidence            99999999999999998888765554 5667899999999998877664 6643  445556778888876 67888999


Q ss_pred             ecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHH
Q psy10545       1023 LSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIK 1102 (1428)
Q Consensus      1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee 1102 (1428)
                      +++++.+  .++..+..               ++.+...+..++..+|+.+|+|++++.+.+..+...   ..|..++++
T Consensus       285 ~~~~~~~--~~~~~~~~---------------~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~  344 (434)
T PRK07233        285 LRRPLTD--YYWLNIND---------------PGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH---PLWQMSDEE  344 (434)
T ss_pred             ecCCCCC--CceeeecC---------------CCCCcceEEEecccCCccccCCceEEEEeeecCCCC---hhhcCCHHH
Confidence            9987532  22222110               112233344456667777777877655544443322   245567789


Q ss_pred             HHHHHHHHHHhccCCCccC-ceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCcc--C
Q psy10545       1103 LKNIVFMYLEQYCIPNLRK-KLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTH--P 1179 (1428)
Q Consensus      1103 ~~~~vl~~L~~~~~P~l~~-~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~--p 1179 (1428)
                      +++.++++|++ .+|++.. .++...+.      ++.  +....+  .++.   ...+|...++ ++||||||+++.  +
T Consensus       345 ~~~~~~~~L~~-~~p~~~~~~~~~~~~~------r~~--~a~~~~--~~g~---~~~~~~~~~~-~~~l~~aG~~~~~~~  409 (434)
T PRK07233        345 LLDRFLSYLRK-MFPDFDRDDVRAVRIS------RAP--YAQPIY--EPGY---LDKIPPYDTP-IEGLYLAGMSQIYPE  409 (434)
T ss_pred             HHHHHHHHHHH-hCCCCChhheeeEEEE------Eec--cccccc--cCch---hhcCCCcccC-cCCEEEeCCcccCCc
Confidence            99999999998 8897753 33333321      110  011111  1111   1234555665 899999999643  3


Q ss_pred             CCCcccccccccccccccc
Q psy10545       1180 GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1180 g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      +.+|+||+.||+.+|+.|.
T Consensus       410 ~~~~~~Ai~sG~~aA~~i~  428 (434)
T PRK07233        410 DRSINGSVRAGRRVAREIL  428 (434)
T ss_pred             cCchhHHHHHHHHHHHHHh
Confidence            4589999999999999884

>PLN02612 phytoene desaturase

Probab=99.97  E-value=2.5e-28  Score=304.84  Aligned_cols=421  Identities=21%  Similarity=0.259  Sum_probs=261.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      ..++|+|||||++||+||++|+++|++|+|+|+++++||++.+++. +|+.+|.|+|++.+ ...+.++++++|..  +.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~--~~  169 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIN--DR  169 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCc--cc
Confidence            4578999999999999999999999999999999999999999874 78999999999875 23467899999963  22


Q ss_pred             ceEEecCCceEEEeCCCcEE--EecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh-
Q psy10545        788 VNLLPIKPFYRLYWGKEKFL--NYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL-  864 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  864 (1428)
                      +.+......+......+...  .++..           .|........++.              ..+..++.+.++.. 
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------~P~~l~~~~~~l~--------------~~~~ls~~~kl~~~~  224 (567)
T PLN02612        170 LQWKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGIWAILR--------------NNEMLTWPEKIKFAI  224 (567)
T ss_pred             ceecccceEEEecCCCCceeeCcCchh-----------cCChhhhhHHHHh--------------cCccCCHHHHHHHHH
Confidence            33322211111111112111  11110           0111000000000              00000111111100 


Q ss_pred             ---H------HHHhhcccCCHHHHHHhhcCCHHHH-HHHHhhc-ccccCCCCchhHHHHH--H-HHhccccc--eeeecC
Q psy10545        865 ---P------KLIKIKAWKSVYSIVSQFIKNDYLK-QAFSFNS-LFIGGNPFSTSSIYTL--I-HALEYEWG--IWFPKG  928 (1428)
Q Consensus       865 ---~------~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~-~~~g~~p~~~s~~~~~--~-~~~~~~~g--~~~~~g  928 (1428)
                         +      ......+..|+.+|+++...++.+. +++.... ..++.+|++.++.+.+  + .++....|  ..++.|
T Consensus       225 ~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G  304 (567)
T PLN02612        225 GLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG  304 (567)
T ss_pred             hhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecC
Confidence               0      0111124789999999976666444 4555432 3446677777763322  2 22232222  335566


Q ss_pred             ch-HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHH
Q psy10545        929 GV-GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMN 1006 (1428)
Q Consensus       929 G~-~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~ 1006 (1428)
                      +. ..+++.|++.+++.|++|++|++|++|..+ ++++++|++.+|+++.||+||+|+|+. +++.|+++...+....+.
T Consensus       305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~-~l~~Ll~~~~~~~~~~~~  383 (567)
T PLN02612        305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD-ILKLLLPDQWKEIPYFKK  383 (567)
T ss_pred             CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH-HHHHhCcchhcCcHHHHH
Confidence            64 689999999999999999999999999985 455677888899999999999999765 555577754434345566


Q ss_pred             HhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545       1007 LIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1007 l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
                      ++++.+. +++++++.+++++.....+.++-..+.                ..++...++. .+...++++..+.+. ..
T Consensus       384 l~~l~~~-~v~~v~l~~dr~~~~~~~~~~~~~~~~----------------~~~~~d~S~~-~~~~~~~~~~ll~~~-~~  444 (567)
T PLN02612        384 LDKLVGV-PVINVHIWFDRKLKNTYDHLLFSRSPL----------------LSVYADMSTT-CKEYYDPNKSMLELV-FA  444 (567)
T ss_pred             HHhcCCC-CeEEEEEEECcccCCCCCceeecCCCC----------------ceeehhhhhc-chhhcCCCCeEEEEE-EE
Confidence            7777765 689999999999632222333211110                1122222222 223345565544433 22


Q ss_pred             CCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCcc------CceE-EEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545       1087 PNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLR------KKLI-TQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus      1087 p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~------~~i~-~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
                      +.     ..| ..+++++++.++++|++ .+|+..      ..+. +..+.+|.++           |+..++.   ...
T Consensus       445 ~a-----~~~~~~sdeei~e~vl~~L~~-lfp~~~~~~~~~~~i~~~~~v~~P~a~-----------~~~~pg~---~~~  504 (567)
T PLN02612        445 PA-----EEWISRSDEDIIDATMKELAK-LFPDEISADQSKAKILKYHVVKTPRSV-----------YKTVPNC---EPC  504 (567)
T ss_pred             cC-----hhhhcCCHHHHHHHHHHHHHH-HCCcccccccCCceEEEEEEeccCCce-----------EEeCCCC---ccc
Confidence            21     244 34679999999999998 888762      2233 3455666653           2222221   124


Q ss_pred             CCCCCCCCCCceEEecCCccCC--CCcccccccccccccccc
Q psy10545       1159 RPHNRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1159 rp~~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ||..++| ++|||||||||.++  ++|+||+.||+.+|+.|.
T Consensus       505 rp~~~tP-i~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~  545 (567)
T PLN02612        505 RPLQRSP-IEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIV  545 (567)
T ss_pred             CccccCc-cCCEEEeecceeCCchhhHHHHHHHHHHHHHHHH
Confidence            6777887 99999999999875  489999999999999885

>PLN02463 lycopene beta cyclase

Probab=99.97  E-value=3.2e-29  Score=301.45  Aligned_cols=347  Identities=21%  Similarity=0.343  Sum_probs=258.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      ..+|++|+|+||+|+++|..|+++|++|+|||+.+...++|            +.|++...+.                 
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~------------~~g~w~~~l~-----------------   77 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN------------NYGVWVDEFE-----------------   77 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc------------ccchHHHHHH-----------------
Confidence            34689999999999999999999999999999987553443            2333322111                 


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCCeEEecceEE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVE  468 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~  468 (1428)
                                          ...+.+.....|+...+.++... .....+|+.|+|.+|++.|.+++.+.|+.+..++|+
T Consensus        78 --------------------~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~  137 (447)
T PLN02463         78 --------------------ALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVK  137 (447)
T ss_pred             --------------------HCCcHHHHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEE
Confidence                                01122233345655555554422 223457888999999999999998777444567888


Q ss_pred             EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC------CCcceEEEEEEEEEecC-CcCCCCceEEecccCCCCC---
Q psy10545        469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ------FDGIYQIFLGQQWNLSS-PHGLDIPIIMDATVNQKND---  534 (1428)
Q Consensus       469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~------~~~~~q~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~---  534 (1428)
                      +|+..+    |++++|.+++|++||+|||.+|..      .....|.+.|+.++++. |++....++||++..+.+.   
T Consensus       138 ~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~  217 (447)
T PLN02463        138 KVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPE  217 (447)
T ss_pred             EEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccch
Confidence            886432    778888899999999999999761      12356889999988864 5655677889987554321   


Q ss_pred             ------c-ceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccC
Q psy10545        535 ------E-YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKK  607 (1428)
Q Consensus       535 ------g-~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~r  607 (1428)
                            + ++|+|++|++++++++|.|.+..+...+.+.+++.+.++++..|+...++.+.|.+.|||+...+.  ..+|
T Consensus       218 ~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~--~~~~  295 (447)
T PLN02463        218 LRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPV--IPQR  295 (447)
T ss_pred             hhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCC--CCCC
Confidence                  1 679999999999999999988777777888999999999988888888899999999999877543  4589


Q ss_pred             cccccccccccccCCCCChHHHHHHHHHHHhhc----ccCCC--CChhHHHHHHHH--HHHHHHhHHHHHHH-HHHHhhh
Q psy10545        608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQ--INSTVLFKLVKK--FIINHQKKQRFFCM-LNRLFFL  678 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~-l~~~f~~  678 (1428)
                      +++|||||+++||+||+||..++..+..+++++    ..+..  .+...+.+..++  |..+++++..+++. |..++..
T Consensus       296 ~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~  375 (447)
T PLN02463        296 VLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKL  375 (447)
T ss_pred             EEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcC
Confidence            999999999999999999887666555555544    33333  344445554444  78888888888888 5555555


Q ss_pred             cccccHHHHHHHhhcCChhHhhhhccCccc
Q psy10545        679 SNSRCHLDIMQYFYTLPDKIIRNFYANKLS  708 (1428)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~  708 (1428)
                      +.. .-..+|..||.+|......|+.++..
T Consensus       376 ~~~-~~~~ff~~ff~l~~~~~~gfl~~~~~  404 (447)
T PLN02463        376 DLD-GTRRFFDAFFDLEPHYWHGFLSSRLF  404 (447)
T ss_pred             ChH-HHHHHHHHHHcCCHHHccccccCCCC
Confidence            554 44679999999999999999998765

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.96  E-value=2.8e-28  Score=302.70  Aligned_cols=418  Identities=15%  Similarity=0.114  Sum_probs=267.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRME  785 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~  785 (1428)
                      ++||+|||||++||+||++|+++    |++|+|+|+++++||+++|.+.+|+.+|.|+|++... ..+.++++++|++. 
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~-   80 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEH-   80 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCc-
Confidence            47999999999999999999999    9999999999999999999999999999999999863 34788999998532 


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP  865 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1428)
                       .... .......+...+|+.+.+|.+...+.   . ....      .+.+.+.....    .+...             
T Consensus        81 -~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~---~-~~~~------~~~~~~~~~~~----~~~~~-------------  131 (462)
T TIGR00562        81 -VLVS-DATGQRYVLVNRGKLMPVPTKIAPFV---K-TGLF------SLGGKLRAGMD----FIRPA-------------  131 (462)
T ss_pred             -cccc-CCCCceEEEECCCceecCCCChHHHh---c-CCCC------CchhhHHhhhh----hccCC-------------
Confidence             1111 11111222233366666654432211   0 0000      00011110000    00000             


Q ss_pred             HHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHH--HHHh------------cc-----------
Q psy10545        866 KLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTL--IHAL------------EY-----------  919 (1428)
Q Consensus       866 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~--~~~~------------~~-----------  919 (1428)
                         ....+.|+.+|+.+.+..+..+.++.. ....++.++.+.++...+  +...            ..           
T Consensus       132 ---~~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  208 (462)
T TIGR00562       132 ---SPGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL  208 (462)
T ss_pred             ---CCCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence               011258999999999988888877774 445667777776653211  1000            00           


Q ss_pred             ---ccc--eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        920 ---EWG--IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       920 ---~~g--~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                         ..|  ...++||++.|++.|++.+..  ++|++|++|++|..++++ +.|++++|+++.||+||+|+|+..+.. ++
T Consensus       209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~-ll  284 (462)
T TIGR00562       209 TAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSN-YTLELDNGVTVETDSVVVTAPHKAAAG-LL  284 (462)
T ss_pred             cccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCc-EEEEECCCcEEEcCEEEECCCHHHHHH-Hh
Confidence               011  356899999999999998853  789999999999988776 568888888899999999998887765 66


Q ss_pred             CCCCCChhHHHHHhhcCCCCceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCC
Q psy10545        995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA 1073 (1428)
Q Consensus       995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~a 1073 (1428)
                      ++  .+....+.+.++.|. ++.++.+.++++ ++.......++.++-.             ..+...+.+.|...|..+
T Consensus       285 ~~--~~~~~~~~l~~l~~~-~~~~v~l~~~~~~~~~~~~~~g~l~~~~~-------------~~~~~~~i~~s~~~p~~~  348 (462)
T TIGR00562       285 SE--LSNSASSHLDKIHSP-PVANVNLGFPEGSVDGELEGFGFLISRSS-------------KFAILGCIFTSKLFPNRA  348 (462)
T ss_pred             cc--cCHHHHHHHhcCCCC-ceEEEEEEEchHHcCCCCCceEEEccCCC-------------CCceEEEEEEccccCCcC
Confidence            53  456677889999998 688999999876 3321122333322100             112344555666678888


Q ss_pred             CCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccc
Q psy10545       1074 PTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLT 1153 (1428)
Q Consensus      1074 p~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~ 1153 (1428)
                      |+|+.++++++.....   ...++.+++++++.++++|.+ +++ +...+....+.   .|.       .+...+.++..
T Consensus       349 p~g~~~l~~~~~g~~~---~~~~~~~~ee~~~~v~~~L~~-~~g-i~~~p~~~~v~---rw~-------~a~P~~~~g~~  413 (462)
T TIGR00562       349 PPGKTLLTAYIGGATD---ESIVDLSENEIINIVLRDLKK-VLN-INNEPEMLCVT---RWH-------RAIPQYHVGHD  413 (462)
T ss_pred             CCCcEEEEEEeCCCCC---ccccCCCHHHHHHHHHHHHHH-HhC-CCCCCcEEEEe---Ecc-------ccCCCCCCChH
Confidence            8888877776644221   223455778999999999998 553 44323322221   111       11111111110


Q ss_pred             c-ccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1154 Q-SAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1154 q-~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      . ....++....+ .+|||+||+|.. |.|+++|+.||+.+|+.+.
T Consensus       414 ~~~~~i~~~l~~~-~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~  457 (462)
T TIGR00562       414 QRLKEARELLESA-YPGVFLTGNSFE-GVGIPDCIDQGKAAASDVL  457 (462)
T ss_pred             HHHHHHHHHHHhh-CCCEEEeccccC-CCcHHHHHHHHHHHHHHHH
Confidence            0 00011111122 479999999986 7799999999999998874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02487 zeta-carotene desaturase

Probab=99.96  E-value=4e-27  Score=289.26  Aligned_cols=430  Identities=15%  Similarity=0.113  Sum_probs=265.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      ++++|+|||||++||++|+.|+++|++|+|+|+++.+||++.++. ..|+.+|.|.|++.+ ...+.++++++|+.  +.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~--~~  151 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD--EN  151 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc--cc
Confidence            346999999999999999999999999999999999999999996 579999999999875 34577899999953  22


Q ss_pred             ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh----
Q psy10545        788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI----  863 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  863 (1428)
                      +.+.  .....+...+|....+.....         .+.....+..+               ...+..++.+.++.    
T Consensus       152 ~~~~--~~~~~~~~~~g~~~~~~~~~p---------~~~pl~~~~~~---------------l~~~~Ls~~dklr~~~~l  205 (569)
T PLN02487        152 LLVK--DHTHTFVNKGGDVGELDFRFP---------VGAPLHGIKAF---------------LTTNQLEPYDKARNALAL  205 (569)
T ss_pred             cccc--ccceeEEecCCEEeeeccCCC---------CCchhhhHHHH---------------HcCCCCCHHHHHhhcccc
Confidence            2221  111112233443322110000         00000000011               01111111111110    


Q ss_pred             --h------------HHHHhhcccCCHHHHHHhhcCCH-HHHHHHHhhc-ccccCCCCchhHHH--HHHHHh--ccccc-
Q psy10545        864 --L------------PKLIKIKAWKSVYSIVSQFIKND-YLKQAFSFNS-LFIGGNPFSTSSIY--TLIHAL--EYEWG-  922 (1428)
Q Consensus       864 --~------------~~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~-~~~g~~p~~~s~~~--~~~~~~--~~~~g-  922 (1428)
                        .            ...+...++.|+.+|+.++..++ .++.+++... ..++.++++.|+..  ..+..+  ....+ 
T Consensus       206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~  285 (569)
T PLN02487        206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASL  285 (569)
T ss_pred             cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcce
Confidence              0            00111234689999999999877 6777887543 44567888888633  233322  11122 


Q ss_pred             eeeecCchHH-HHHHHHHHHHHcCcEEEeCceeeEEEEeCC-----eEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545        923 IWFPKGGVGA-LIKALIKLFQNLGGNLILNSQVISIYVNNN-----KVNKVHL---KNGQIFDADIIVSNADIINTYRNL  993 (1428)
Q Consensus       923 ~~~~~gG~~~-l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~-----~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~L  993 (1428)
                      ..+++||+.. |++.+++.|+++|++|+++++|++|..+++     ++++|++   .+++++.+|.||+|+|++.+. .|
T Consensus       286 l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~-~L  364 (569)
T PLN02487        286 LRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIK-RL  364 (569)
T ss_pred             eeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHH-Hh
Confidence            5688999995 999999999999999999999999999742     3788888   345578999999999888655 58


Q ss_pred             cCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEE------EcCCChHHHHHHHhcCCCCCCCceEEEEeCCC
Q psy10545        994 LGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTI------FFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067 (1428)
Q Consensus       994 l~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 1067 (1428)
                      +++........+.+..+.+. +++.|++.|++++....+.+.      +.+      ++..+..+  .....++.... .
T Consensus       365 lp~~~~~~~~~~~l~~L~~~-pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g------~~~~~~~~--~~~~~f~~di~-l  434 (569)
T PLN02487        365 LPEQWREYEFFDNIYKLVGV-PVVTVQLRYNGWVTEMQDLELSRQLRRAAG------LDNLLYSA--DADFSCFADLA-L  434 (569)
T ss_pred             CCchhhccHHHhHHhcCCCe-eEEEEEEEeccccccccccccccccccccc------cccccccc--CCCcceEeeee-c
Confidence            87652222234667777665 688999999988532221110      111      00000000  00111111110 0


Q ss_pred             CCCC--CCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCc-eEEEEecCcccHHHHhCCCCCc
Q psy10545       1068 TDLS--LAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKK-LITQRIFTPNDFKDVLGSYLGS 1144 (1428)
Q Consensus      1068 ~d~s--~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~-i~~~~~~tp~~~~~~~~~~~G~ 1144 (1428)
                      ..+.  ..+.....+.+.++..     ...+..+++++++.++++|.+ ++|.+.+. +....+..          ...+
T Consensus       435 ~~~~~~~~~~~g~~l~~vis~a-----~~~~~~~~~ei~~~~~~~L~~-~~p~~~~~~v~~~~vv~----------~~~a  498 (569)
T PLN02487        435 TSPEDYYKEGEGSLIQAVLTPG-----DPYMPLSNDKIVEKVHKQVLE-LFPSSRGLEVTWSSVVK----------IGQS  498 (569)
T ss_pred             CCHHHHcccCCceEEEEEEcCC-----ccccCCCHHHHHHHHHHHHHH-hCcccccCceEEEEEEE----------ccCc
Confidence            0011  0111123444443321     124566789999999999998 89987643 33322211          1123


Q ss_pred             ccccccccccccccCCCCCCCCCCceEEecCCccCCC--Ccccccccccccccccc
Q psy10545       1145 AFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA--ANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1145 ~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~--gv~GA~~sg~~~a~~i~ 1198 (1428)
                      +|...|+..   ..||..+|| ++|||+|||||.+++  +||||+.||..+|+.+.
T Consensus       499 t~~~~pg~~---~~RP~~~T~-~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~  550 (569)
T PLN02487        499 LYREAPGMD---PFRPDQKTP-ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYIC  550 (569)
T ss_pred             eeccCCCcc---ccCCCCCCC-CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHH
Confidence            454444332   357989998 999999999998765  89999999999998774

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.96  E-value=7.3e-28  Score=298.55  Aligned_cols=419  Identities=17%  Similarity=0.129  Sum_probs=261.8

Q ss_pred             ceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      ++|+|||||+|||+||+.|+++|  ++|+|||+++++||+++|.+.+|+.+|.|+|++.. ...+.++++++|++.  . 
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~--~-   77 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED--E-   77 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc--c-
Confidence            37999999999999999999988  89999999999999999999999999999997764 334788999999642  1 


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHH--HHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGY--RLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                       ...........+.+|+.+.++.+.      +.. .|......  ..++.....+... . .. ..+.            
T Consensus        78 -~~~~~~~~~~~~~~g~~~~~p~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~------------  134 (451)
T PRK11883         78 -LVANTTGQSYIYVNGKLHPIPPGT------VMG-IPTSIAPFLFAGLVSPIGKLRAA-A-DL-RPPR------------  134 (451)
T ss_pred             -eecCCCCcceEEECCeEEECCCCC------eec-cCCCchhhhcCCCCCHHHHHHhh-C-cc-cCCC------------
Confidence             111111112334456655544320      000 01000000  0000000000000 0 00 0000            


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHH---HHH----------hc--------ccc-ce
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTL---IHA----------LE--------YEW-GI  923 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~---~~~----------~~--------~~~-g~  923 (1428)
                       .....+.|+.+|+.+.+.....+.++.. ....++.++.+.++...+   ...          +.        ... ..
T Consensus       135 -~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T PRK11883        135 -WKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVF  213 (451)
T ss_pred             -CCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCce
Confidence             0112468999999988887777777764 345667777777653211   110          00        011 23


Q ss_pred             eeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        924 WFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       924 ~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      ++++||++.+++.|++.+++.  +|++|++|++|..++++ +.|++++|+++.||+||+|+|+..+.. ++.+    +..
T Consensus       214 ~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~~~~~~-l~~~----~~~  285 (451)
T PRK11883        214 GTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPHPVLPS-LFVA----PPA  285 (451)
T ss_pred             EeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCHHHHHH-hccC----hhH
Confidence            578999999999999988643  89999999999988876 567888898999999999999887776 5443    234


Q ss_pred             HHHHhhcCCCCceEEEEEeecCCcCCCcc-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEE
Q psy10545       1004 YMNLIKKKMSNSLFVIYFGLSEQYTHLAH-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYA 1082 (1428)
Q Consensus      1004 ~~~l~~~~~~~s~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v 1082 (1428)
                      .+.++++.++ ++.++++.++++++..+. +.+++..+.              +.+...+.+++...|..+|+|..++..
T Consensus       286 ~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~p~g~~~~~~  350 (451)
T PRK11883        286 FALFKTIPST-SVATVALAFPESATNLPDGTGFLVARNS--------------DYTITACTWTSKKWPHTTPEGKVLLRL  350 (451)
T ss_pred             HHHHhCCCCC-ceEEEEEEeccccCCCCCceEEEecCCC--------------CCcEEEEEeEcCcCCCCCCCCcEEEEE
Confidence            5678888888 577999999988533333 344443211              123345556677778888888766555


Q ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccc-cccccCCC
Q psy10545       1083 LIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLT-QSAWFRPH 1161 (1428)
Q Consensus      1083 ~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~-q~~~~rp~ 1161 (1428)
                      +...+...   ..++.+++++++.++++|++ .++ +....+...+.   .|..       +...+.++.. +....++.
T Consensus       351 ~~~~~~~~---~~~~~~~~~~~~~~~~~L~~-~~g-~~~~~~~~~~~---rw~~-------a~p~~~~~~~~~~~~l~~~  415 (451)
T PRK11883        351 YVGRPGDE---AVVDATDEELVAFVLADLSK-VMG-ITGDPEFTIVQ---RWKE-------AMPQYGVGHIERVAELRAG  415 (451)
T ss_pred             ecCCCCCc---hhccCCHHHHHHHHHHHHHH-HhC-CCCCceEEEEe---ecCc-------cCCCCCccHHHHHHHHHHh
Confidence            44332221   13445678999999999998 553 33332222221   1111       1111111111 11111222


Q ss_pred             CCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1162 NRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1162 ~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ..  .++|||+||+|+. |.|+++|+.||+.+|+.|.
T Consensus       416 l~--~~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~  449 (451)
T PRK11883        416 LP--HYPGLYVAGASFE-GVGLPDCIAQAKRAAARLL  449 (451)
T ss_pred             hh--hCCCEEEECcccC-CccHHHHHHHHHHHHHHHH
Confidence            22  1579999999987 7799999999999998764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.96  E-value=2.5e-27  Score=290.73  Aligned_cols=425  Identities=17%  Similarity=0.140  Sum_probs=255.3

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      +|+|||||++||+||+.|++.|++|+|+|+++++||+++++. ..|+.+|.|+|++.. ...+.++++++|..  +.+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~--~~~~~   78 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAE--DNLLL   78 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCc--ccccc
Confidence            589999999999999999999999999999999999999984 679999999999875 33567888888853  22221


Q ss_pred             EecCCceEEEeCCCcEEEecCC-----HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh-
Q psy10545        791 LPIKPFYRLYWGKEKFLNYEDN-----IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL-  864 (1428)
Q Consensus       791 ~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  864 (1428)
                      .  .....+...++....+...     +-.....+.+                             .+..++.+.++.. 
T Consensus        79 ~--~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~-----------------------------~~~ls~~dklr~~~  127 (474)
T TIGR02732        79 K--EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFT-----------------------------TSQLKWVDKLRNAL  127 (474)
T ss_pred             c--cceeEEEcCCCcccccccCCCCCCchhhhHHHhc-----------------------------CCCCCHHHHHHHHH
Confidence            1  1111122222322111100     0000001111                             1111111111100 


Q ss_pred             -----H------------HHHhhcccCCHHHHHHhhcCCHH-HHHHHHhh-cccccCCCCchhHHHH--HHHHhc-ccc-
Q psy10545        865 -----P------------KLIKIKAWKSVYSIVSQFIKNDY-LKQAFSFN-SLFIGGNPFSTSSIYT--LIHALE-YEW-  921 (1428)
Q Consensus       865 -----~------------~~~~~~~~~s~~~~l~~~~~~~~-l~~~l~~~-~~~~g~~p~~~s~~~~--~~~~~~-~~~-  921 (1428)
                           +            ..+...++.|+.+|++++..++. ++.++... ...++.++++.|+...  .+..+. ... 
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~  207 (474)
T TIGR02732       128 ALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEA  207 (474)
T ss_pred             HhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence                 0            01112246999999999988875 77777743 3455778888886322  112221 111 


Q ss_pred             -ceeeecCchHH-HHHHHHHHHHHcCcEEEeCceeeEEEEeC---C--eEEEEEecCC---cEEEcCEEEEcCCHHHHHH
Q psy10545        922 -GIWFPKGGVGA-LIKALIKLFQNLGGNLILNSQVISIYVNN---N--KVNKVHLKNG---QIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       922 -g~~~~~gG~~~-l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---~--~v~~V~~~~G---~~i~ad~VV~A~~~~~~~~  991 (1428)
                       ...+++||.+. +.+.|.+.|+++|++|+++++|++|..++   +  ++++|++.+|   +++.||+||+|+|++.+..
T Consensus       208 s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~  287 (474)
T TIGR02732       208 SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR  287 (474)
T ss_pred             ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh
Confidence             34577888766 67779999999999999999999999864   2  3677777654   5689999999998887665


Q ss_pred             HhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceE--EEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCC
Q psy10545        992 NLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHT--IFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTD 1069 (1428)
Q Consensus       992 ~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d 1069 (1428)
                       |+++..........+..+.+. ++.+|++.+++++......+  -.+. +... ++.+.   ...+.-+.+...-+...
T Consensus       288 -Ll~~~~~~~~~~~~l~~l~~~-pi~~v~l~~~~~v~~~~~~~~~~~l~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~  360 (474)
T TIGR02732       288 -LLPQEWRQFEEFDNIYKLDAV-PVATVQLRYDGWVTELQDLAKRKQLK-RAAG-LDNLL---YTADADFSCFADLALTS  360 (474)
T ss_pred             -hCChhhhcCHHHhhHhcCCCC-CeEEEEEEeccccccccchhhhhccc-cccc-ccccc---cccCccceeeehhhccC
Confidence             877532222345677888876 68899999998743211000  0000 0000 00000   00000000100000111


Q ss_pred             C-CCCCCCccE-EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCc-eEEEEecCcccHHHHhCCCCCccc
Q psy10545       1070 L-SLAPTGCST-FYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKK-LITQRIFTPNDFKDVLGSYLGSAF 1146 (1428)
Q Consensus      1070 ~-s~ap~G~~~-l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~-i~~~~~~tp~~~~~~~~~~~G~~~ 1146 (1428)
                      + ...+.+... +.+.++..     ...++.+++++++.++++|++ .+|.+.+. +....+.          ....+++
T Consensus       361 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~L~~-~~p~~~~~~~~~~~v~----------~~~~a~~  424 (474)
T TIGR02732       361 PDDYYKEGQGSLLQCVLTPG-----DPWMPESNEEIAKRVDKQVRA-LFPSSKNLKLTWSSVV----------KLAQSLY  424 (474)
T ss_pred             HHHHhccCCCeEEEEEEeCh-----hhhcCCCHHHHHHHHHHHHHH-hCccccCCceeEEEEE----------EecCcee
Confidence            1 122233333 33333221     124456778999999999998 99976542 2222111          0112344


Q ss_pred             ccccccccccccCCCCCCCCCCceEEecCCccCCC--Cccccccccccccccc
Q psy10545       1147 SFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA--ANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus      1147 g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~--gv~GA~~sg~~~a~~i 1197 (1428)
                      ...|+..   ..||..+|| ++|||+|||||.+++  +++||+.||+.+|+.|
T Consensus       425 ~~~pg~~---~~~P~~~t~-~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i  473 (474)
T TIGR02732       425 REAPGMD---PFRPDQKTP-ISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAI  473 (474)
T ss_pred             ccCCCCc---ccCCCCCCC-CCCeEEeccccccCchHHHhHHHHHHHHHHHHh
Confidence            4444432   357888998 999999999998654  8999999999999876

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.96  E-value=6.6e-28  Score=282.83  Aligned_cols=410  Identities=18%  Similarity=0.169  Sum_probs=279.7

Q ss_pred             ceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~~l  788 (1428)
                      +.|+|||||++||+||++|+++|  .+|+|||+++++||.+.|+..+|+.+|.|+|.+... ....++++++|+  ++.+
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGl--ed~l   78 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGL--EDKL   78 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCc--HHhh
Confidence            36999999999999999999999  899999999999999999999999999999988754 667889999995  3432


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccH----HHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDI----KGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL  864 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  864 (1428)
                      .  .......+++.+|+.+++|....      ..+ |...    .....++           ..+..             
T Consensus        79 ~--~~~~~~~~i~~~gkl~p~P~~~i------~~i-p~~~~~~~~~~~~~~-----------~~~~~-------------  125 (444)
T COG1232          79 L--WNSTARKYIYYDGKLHPIPTPTI------LGI-PLLLLSSEAGLARAL-----------QEFIR-------------  125 (444)
T ss_pred             c--cCCcccceEeeCCcEEECCccce------eec-CCccccchhHHHHHH-----------Hhhhc-------------
Confidence            2  22233446778888888876531      111 1110    0000000           00100             


Q ss_pred             HHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHH--HHHHHHhccc--------------------c
Q psy10545        865 PKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSI--YTLIHALEYE--------------------W  921 (1428)
Q Consensus       865 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~--~~~~~~~~~~--------------------~  921 (1428)
                      +..+....+.++.+|+.++++++.+..++. .....++.+.+++|+.  +......+..                    .
T Consensus       126 ~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~  205 (444)
T COG1232         126 PKSWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKE  205 (444)
T ss_pred             ccCCCCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccc
Confidence            111123358999999999999999999887 4567778888887763  2221111110                    1


Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      -..+++||++++.++|++.++..   |+++++|++|..+... +.++..+|+.++||.||+|+|++.+.. ++++.    
T Consensus       206 ~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D~VI~t~p~~~l~~-ll~~~----  276 (444)
T COG1232         206 KFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAG-KTIVDVGGEKITADGVISTAPLPELAR-LLGDE----  276 (444)
T ss_pred             cccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCc-cEEEEcCCceEEcceEEEcCCHHHHHH-HcCCc----
Confidence            12467999999999999999864   9999999999998554 566677888999999999998888776 77762    


Q ss_pred             hHHHHHhhcCCCCceEEEEEeecCC-cCCCcce-EEEcCCChHHHHHHHhcCCCCCCCc-eEEEEeCCCCCCCCCCCCcc
Q psy10545       1002 KKYMNLIKKKMSNSLFVIYFGLSEQ-YTHLAHH-TIFFPSNYKKSIENIFGKNFSRDNL-SIYLHSPSVTDLSLAPTGCS 1078 (1428)
Q Consensus      1002 ~~~~~l~~~~~~~s~~~v~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~d~s~ap~G~~ 1078 (1428)
                      ...+...++.+. +.++|.++++++ .+.+++. ++++..+                ++ ...++++|++.|...|+|++
T Consensus       277 ~~~~~~~~~~~~-s~~~vv~~~~~~~~~~~~~~~g~~iad~----------------~~~~~a~~~~S~~~p~~~p~g~~  339 (444)
T COG1232         277 AVSKAAKELQYT-SVVTVVVGLDEKDNPALPDGYGLLIADD----------------DPYILAITFHSNKWPHEAPEGKT  339 (444)
T ss_pred             chhhhhhhcccc-ceEEEEEEeccccccCCCCceEEEEecC----------------CCcceeEEEecccCCCCCCCCcE
Confidence            233567778876 678889999986 3333333 4444321                12 56788899999999999999


Q ss_pred             EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545       1079 TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus      1079 ~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
                      ++.+....+....   ....++||+++.++++|.+ +++...+.+ ...+.-        +...--.|...+. ......
T Consensus       340 ll~~~~~~~g~~~---~~~~~dee~~~~~l~~L~~-~~~~~~~~~-~~~v~r--------~~~~~PqY~vG~~-~~~~~i  405 (444)
T COG1232         340 LLRVEFGGPGDES---VSTMSDEELVAAVLDDLKK-LGGINGDPV-FVEVTR--------WKYAMPQYEVGHL-DRLEPI  405 (444)
T ss_pred             EEEEEeecCCCcc---hhccCHHHHHHHHHHHHHH-HcCcCcchh-heeeee--------ccccCCccchhHH-HHHHHH
Confidence            9999887654431   2234579999999999998 665444333 222110        0101111221111 111122


Q ss_pred             CCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1159 RPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1159 rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |...... .+|++.+|.|.. |.|+++|+.+|..+++.+.
T Consensus       406 r~~l~~~-y~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~  443 (444)
T COG1232         406 RAALKGA-YPGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL  443 (444)
T ss_pred             HHhhccc-cCCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence            3333322 489999999986 5799999999999877653

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.96  E-value=3.5e-27  Score=292.13  Aligned_cols=423  Identities=14%  Similarity=0.129  Sum_probs=254.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhC------CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA------GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNR  783 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~------G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~  783 (1428)
                      |++|+|||||++||+||++|+++      |++|+|||+++++||+++|.+..|+.+|.|+|++.. ...+.++++++|++
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~   80 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE   80 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence            35799999999999999999986      379999999999999999999999999999999875 34567899999964


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      .  ..  ........+.+.+|...+++.+..      .. .|.....   +               ...+..++...+..
T Consensus        81 ~--~~--~~~~~~~~~~~~~~~~~~~p~~~~------~~-~p~~~~~---~---------------~~~~~~~~~~~~~~  131 (463)
T PRK12416         81 E--EM--VYNETGISYIYSDNTLHPIPSDTI------FG-IPMSVES---L---------------FSSTLVSTKGKIVA  131 (463)
T ss_pred             c--ce--ecCCCCceEEEECCeEEECCCCCe------ec-CCCChHH---h---------------hcCCcCCHHHHHHh
Confidence            2  21  111211233333454444433210      00 0000000   0               00001111111111


Q ss_pred             hHHHHh----hcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHH--HHH-HHHh------------------
Q psy10545        864 LPKLIK----IKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSI--YTL-IHAL------------------  917 (1428)
Q Consensus       864 ~~~~~~----~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~--~~~-~~~~------------------  917 (1428)
                      +.+...    ..++.|+.+|+.+.+..+..+.++.. ....++.++.+.+..  +.. ..+.                  
T Consensus       132 ~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  211 (463)
T PRK12416        132 LKDFITKNKEFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQ  211 (463)
T ss_pred             hhhhccCCCCCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccC
Confidence            111110    12478999999999888887777774 344567778777642  111 1110                  


Q ss_pred             -ccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        918 -EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       918 -~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                       ......++++||++.|+++|++.+++  ++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+. .|+.+
T Consensus       212 ~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p~~~~~-~ll~~  287 (463)
T PRK12416        212 SAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAPHDIAE-TLLQS  287 (463)
T ss_pred             CCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCCHHHHH-hhcCC
Confidence             00112457899999999999999865  689999999999998887 67888888889999999999777654 47665


Q ss_pred             CCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCc-ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCC
Q psy10545        997 YAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA-HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPT 1075 (1428)
Q Consensus       997 ~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~ 1075 (1428)
                      +.++    +.+.++.+. ++.+++++++++....+ ....++.++..             ......+.++|...+..+|+
T Consensus       288 ~~l~----~~~~~~~~~-~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-------------~~~~~~~~~~s~~~~~~~~~  349 (463)
T PRK12416        288 NELN----EQFHTFKNS-SLISIYLGFDILDEQLPADGTGFIVTENS-------------DLHCDACTWTSRKWKHTSGK  349 (463)
T ss_pred             cchh----HHHhcCCCC-ceEEEEEEechhhcCCCCCceEEEeeCCC-------------CCeEEEEEeecCCCCCcCCC
Confidence            4332    456777776 78999999997632222 12223322110             00112334455555555555


Q ss_pred             CccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccc
Q psy10545       1076 GCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQS 1155 (1428)
Q Consensus      1076 G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~ 1155 (1428)
                      +..++.+++....... ...++.+++++.+.++++|++ +++ +....+...+.   .|..  ..+... .+......+ 
T Consensus       350 ~~~l~~~~~~~~~~~~-~~~~~~~dee~~~~~~~~L~~-~lG-~~~~p~~~~v~---~W~~--a~P~y~-~~~~~~~~~-  419 (463)
T PRK12416        350 QKLLVRMFYKSTNPVY-ETIKNYSEEELVRVALYDIEK-SLG-IKGEPEVVEVT---NWKD--LMPKYH-LEHNQAVQS-  419 (463)
T ss_pred             CeEEEEEEeCCCCCCc-hhhhcCCHHHHHHHHHHHHHH-HhC-CCCCceEEEEE---Eccc--cCCCcC-cCHHHHHHH-
Confidence            5444444432111110 111233678999999999998 663 43333333221   1111  011100 110000000 


Q ss_pred             cccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1156 AWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1156 ~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                        .++....+ .+|||+||+++. |.||++|+.||+.+|+.|.
T Consensus       420 --~~~~l~~~-~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~  458 (463)
T PRK12416        420 --LQEKMMNL-YPNIYLAGASYY-GVGIGACIGNGKNTANEII  458 (463)
T ss_pred             --HHHHHHhh-CCCeEEeccccc-cccHHHHHHHHHHHHHHHH
Confidence              11112222 589999999976 7899999999999998875

>PLN02576 protoporphyrinogen oxidase

Probab=99.96  E-value=3.5e-27  Score=295.00  Aligned_cols=432  Identities=17%  Similarity=0.116  Sum_probs=261.7

Q ss_pred             cccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhcccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRMEN  786 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~  786 (1428)
                      ..++||+|||||++||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++... ..+..++++ |.  .+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl--~~   86 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GL--RD   86 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CC--hh
Confidence            4567999999999999999999999 9999999999999999999999999999999999753 344555555 53  33


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                      .+.+.. .....+.+.+|+.+.++.+...+.    ...      +..+.+.+......    +......           
T Consensus        87 ~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~----~~~------~~~~~~~~~~~~~~----~~~~~~~-----------  140 (496)
T PLN02576         87 DLVFPD-PQAPRYVVWNGKLRPLPSNPIDLP----TFD------LLSAPGKIRAGLGA----FGWKRPP-----------  140 (496)
T ss_pred             heecCC-CCceEEEEECCEEEEcCCChHHhc----CcC------cCChhHHHHHhHHH----hhccCCC-----------
Confidence            222211 112234556777777765532211    000      00001111111000    0000000           


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHH--HHHHHh----------------c---------
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIY--TLIHAL----------------E---------  918 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~--~~~~~~----------------~---------  918 (1428)
                        ....+.|+.+|+.+++..+..+.++. +....++.++.+.|+..  ..+...                .         
T Consensus       141 --~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~  218 (496)
T PLN02576        141 --PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEP  218 (496)
T ss_pred             --CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccc
Confidence              01247899999999998888888887 45566788888777632  111110                0         


Q ss_pred             --------cccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCC-cEEEcCEEEEcCCHH
Q psy10545        919 --------YEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNG-QIFDADIIVSNADII  987 (1428)
Q Consensus       919 --------~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G-~~i~ad~VV~A~~~~  987 (1428)
                              .....+.++||++.|+++|++.+.+  .+|++|++|++|..++++.+.|++  .+| +++.||+||+|+|+.
T Consensus       219 ~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~  296 (496)
T PLN02576        219 RDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLY  296 (496)
T ss_pred             cccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHH
Confidence                    0012367799999999999987732  689999999999987765234444  355 369999999999888


Q ss_pred             HHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCC
Q psy10545        988 NTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPS 1066 (1428)
Q Consensus       988 ~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 1066 (1428)
                      .+.. ++.+  .++...+.+.++.|. ++.+|++.+++++ +.-    .+...+... +.....+  ....+.+.+.+.+
T Consensus       297 ~l~~-ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~----~~~~~~~~~-~g~l~~~--~~~~~~lg~~~~s  365 (496)
T PLN02576        297 VVSE-MLRP--KSPAAADALPEFYYP-PVAAVTTSYPKEAVKRE----RLIDGPLEG-FGQLHPR--KQGVKTLGTIYSS  365 (496)
T ss_pred             HHHH-Hhcc--cCHHHHHHhccCCCC-ceEEEEEEEchHHcccc----cccCCCCCc-eEEEccC--CCCCceEEEEeec
Confidence            7766 5553  344566788899988 5789999998863 210    000000000 0000000  0111234455566


Q ss_pred             CCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCcc
Q psy10545       1067 VTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSA 1145 (1428)
Q Consensus      1067 ~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~ 1145 (1428)
                      ...|...|++...+.+++.....   ...++.+++++++.++++|.+ +++.-. .......+.   .|..       +.
T Consensus       366 ~~~p~~~~~~~~~l~~~~~~~~~---~~~~~~s~ee~~~~~~~~L~~-~~g~~~~~~p~~~~~~---~w~~-------a~  431 (496)
T PLN02576        366 SLFPDRAPEGRVLLLNYIGGSRN---TGIASASEEELVEAVDRDLRK-LLLKPGAPPPKVVGVR---VWPK-------AI  431 (496)
T ss_pred             CcCCCCCCCCCEEEEEEECCCCC---cccccCCHHHHHHHHHHHHHH-HhCCCCCCCCcEEEEe---EcCc-------cc
Confidence            66788888777666655543221   234555778999999999998 664211 111111111   1111       11


Q ss_pred             ccccccccc-ccccCCCCCCCCCCceEEecCCccCCCCccccccccccccccccc
Q psy10545       1146 FSFAPLLTQ-SAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1146 ~g~~~~~~q-~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      .-+.++... ....+........+|||+||+|+. |.|+++|+.||+.+|+.|..
T Consensus       432 P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~  485 (496)
T PLN02576        432 PQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVIS  485 (496)
T ss_pred             CCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHH
Confidence            111111100 000000001111279999999997 78999999999999999853

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.95  E-value=4.5e-26  Score=281.44  Aligned_cols=414  Identities=20%  Similarity=0.235  Sum_probs=249.3

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++.|+. .+|+.+|.|.|++.. ...+.++++++|..  +.+.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~~~~   78 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE--DRLQW   78 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc--cceee
Confidence            589999999999999999999999999999999999999985 478999999999875 33467899999953  22222


Q ss_pred             EecCCceEEEeCCCcEE--EecC---CHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545        791 LPIKPFYRLYWGKEKFL--NYED---NIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP  865 (1428)
Q Consensus       791 ~~~~~~~~~~~~~g~~~--~~~~---~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1428)
                      ......+.....++...  .++.   ........+. ..                            +..++.+.++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------------~~~~~~~~~~~~~  129 (453)
T TIGR02731        79 KSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILR-NN----------------------------DMLTWPEKIKFAI  129 (453)
T ss_pred             cCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhc-Cc----------------------------CCCCHHHHHHHHH
Confidence            22111111101112111  1111   0000000000 00                            0011111111000


Q ss_pred             ----------HHHhhcccCCHHHHHHhhcCCHHHH-HHHHh-hcccccCCCCchhHHHHH--H-HHhccccce--eeecC
Q psy10545        866 ----------KLIKIKAWKSVYSIVSQFIKNDYLK-QAFSF-NSLFIGGNPFSTSSIYTL--I-HALEYEWGI--WFPKG  928 (1428)
Q Consensus       866 ----------~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~-~~~~~g~~p~~~s~~~~~--~-~~~~~~~g~--~~~~g  928 (1428)
                                ......+..|+.+|+.+...++.+. .++.. ....++.+|.+.|+.+.+  + .++....|.  .+..|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g  209 (453)
T TIGR02731       130 GLLPAIVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDG  209 (453)
T ss_pred             HhHHHHhcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecC
Confidence                      0011124789999999876666644 45553 334456788877764432  2 223222222  23444


Q ss_pred             c-hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCc-----EEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        929 G-VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQ-----IFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       929 G-~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~-----~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      + ++.+++.|.+.+++.|++|++|++|++|..+ ++++++|++.+|+     ++.||.||+|+|+.. +..+++......
T Consensus       210 ~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~  288 (453)
T TIGR02731       210 APPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQM  288 (453)
T ss_pred             CChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcC
Confidence            3 5789999999999999999999999999864 4557788887665     799999999998876 555775432123


Q ss_pred             hHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEE
Q psy10545       1002 KKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFY 1081 (1428)
Q Consensus      1002 ~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~ 1081 (1428)
                      ...+.+.++++. +++++++.+++++... .+.++. .+..               ........+.. ....++++..+.
T Consensus       289 ~~~~~~~~~~~~-~~~~v~l~~~~~~~~~-~~~~~~-~~~~---------------~~~~~~~s~~~-~~~~~~~~~l~~  349 (453)
T TIGR02731       289 PFFQKLNGLEGV-PVINVHIWFDRKLTTV-DHLLFS-RSPL---------------LSVYADMSETC-KEYADPDKSMLE  349 (453)
T ss_pred             HHHHHhhcCCCC-cEEEEEEEEccccCCC-Cceeee-CCCc---------------ceeecchhhhC-hhhcCCCCeEEE
Confidence            445667777765 6899999999986321 112211 1100               00000111111 122344444444


Q ss_pred             EEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCcc------CceEEEEecCcccHHHHhCCCCCcccccccccccc
Q psy10545       1082 ALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR------KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQS 1155 (1428)
Q Consensus      1082 v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~------~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~ 1155 (1428)
                      +.+. ..    ...|..+++++.+.++++|++ .+|+..      +.+...+..+|.+.           +...++.   
T Consensus       350 ~~~~-~~----~~~~~~~~ee~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~p~a~-----------~~~~pg~---  409 (453)
T TIGR02731       350 LVFA-PA----ADWIGRSDEEIIDATMAELAK-LFPNHIKADSPAKILKYKVVKTPRSV-----------YKTTPGR---  409 (453)
T ss_pred             EEec-Ch----hhhhcCCHHHHHHHHHHHHHH-hCCcccCCCCCceEEEEEEEECCCce-----------eccCCCC---
Confidence            4322 11    123556789999999999998 887521      12334445555541           1112221   


Q ss_pred             cccCCCCCCCCCCceEEecCCccCC--CCcccccccccccccccc
Q psy10545       1156 AWFRPHNRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1156 ~~~rp~~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ...+|..++| ++||||||+++..+  ++|+||+.||..+|+.|+
T Consensus       410 ~~~~~~~~~p-~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       410 QQYRPHQKTP-IPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             hhhCccccCc-cCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence            1235666776 89999999998543  379999999999998763

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07208 hypothetical protein; Provisional

Probab=99.95  E-value=2.4e-26  Score=286.22  Aligned_cols=421  Identities=16%  Similarity=0.129  Sum_probs=265.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      |+++||+|||||++||+||+.|+++|++|+|+|+++++||++.|...+|+.+|.|+|++.. ...+.+++++++.  .+.
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~--~~~   79 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILP--DDD   79 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcC--CCc
Confidence            4567999999999999999999999999999999999999999999999999999998875 3456888898873  121


Q ss_pred             ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545        788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL  867 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (1428)
                      +..  ..... ..+.+|+.+.++.+....   +......      ............        ..             
T Consensus        80 ~~~--~~~~~-~~~~~g~~~~~p~~~~~~---l~~~~~~------~~~~~~~~~~~~--------~~-------------  126 (479)
T PRK07208         80 FLL--RPRLS-RIYYRGKFFDYPLKAFDA---LKNLGLW------RTAKCGASYLKA--------RL-------------  126 (479)
T ss_pred             ccc--ccccc-eEEECCEEecCCcchhHH---HHhCCHh------HHHHHHHHHHHH--------hc-------------
Confidence            111  11211 223356665555432111   1111100      000000000000        00             


Q ss_pred             HhhcccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhHHHHH-----------H-HHhcc---------------
Q psy10545        868 IKIKAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTL-----------I-HALEY---------------  919 (1428)
Q Consensus       868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~~~~~-----------~-~~~~~---------------  919 (1428)
                      ....+..|+.+|+.+.+..+..+.++..+ ...++.+|.+.+..+.+           + ..+..               
T Consensus       127 ~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
T PRK07208        127 RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL  206 (479)
T ss_pred             CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence            00123689999999999888888888743 45678888877653211           1 11111               


Q ss_pred             ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeE-EEEEec--CCc--EEEcCEEEEcCCHHHHHHHhc
Q psy10545        920 EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKV-NKVHLK--NGQ--IFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       920 ~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v-~~V~~~--~G~--~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      .....+|+||++.+++.|++.+++.|++|++|++|++|..+++++ +.++..  +|+  ++.||+||+|+|+..+.. ++
T Consensus       207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~l  285 (479)
T PRK07208        207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-AL  285 (479)
T ss_pred             eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-hc
Confidence            012457899999999999999999999999999999999987653 344432  453  689999999998888876 55


Q ss_pred             CCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC
Q psy10545        995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074 (1428)
Q Consensus       995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap 1074 (1428)
                      .+ .+|....+.+.++.+. +++++++.++++. ..+.+++++... .              .+...+..++..+|..+|
T Consensus       286 ~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~-~~~~~~~~~~~~-~--------------~~~~r~~~~~~~~~~~~p  347 (479)
T PRK07208        286 DP-PPPPEVRAAAAGLRYR-DFITVGLLVKELN-LFPDNWIYIHDP-D--------------VKVGRLQNFNNWSPYLVP  347 (479)
T ss_pred             CC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCC-CCCCceEEecCC-C--------------CccceecccccCCcccCC
Confidence            53 3566666778888887 6889999999873 233445554321 0              011123344566688889


Q ss_pred             CCcc-EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEec-CcccHHHHhCCCCCccccccccc
Q psy10545       1075 TGCS-TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIF-TPNDFKDVLGSYLGSAFSFAPLL 1152 (1428)
Q Consensus      1075 ~G~~-~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~-tp~~~~~~~~~~~G~~~g~~~~~ 1152 (1428)
                      +|++ .+.+..++...   ...|..+++++++.++++|.+ +.+.-.+.++..++. .+..+    ..+..   +.....
T Consensus       348 ~g~~~~l~~~~~~~~~---~~~~~~~deel~~~~~~~L~~-l~~~~~~~~~~~~v~r~~~a~----P~y~~---~~~~~~  416 (479)
T PRK07208        348 DGRDTWLGLEYFCFEG---DDLWNMSDEDLIALAIQELAR-LGLIRPADVEDGFVVRVPKAY----PVYDG---TYERNV  416 (479)
T ss_pred             CCCceEEEEEEEccCC---CccccCCHHHHHHHHHHHHHH-cCCCChhheeEEEEEEecCcc----cCCCc---hHHHHH
Confidence            8885 22222222211   235777788999999999998 533113444443321 11110    11000   000000


Q ss_pred             ccccccCCCCCCCCCCceEEecCCccCC-CCccccccccccccccccc
Q psy10545       1153 TQSAWFRPHNRDKNLTNLYFVGAGTHPG-AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1153 ~q~~~~rp~~~t~~i~~Ly~aGd~t~pg-~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      .   ..+. ..++ .+|||+||++.... ..+++|+.||..+|+.|..
T Consensus       417 ~---~~~~-~~~~-~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~  459 (479)
T PRK07208        417 E---IIRD-LLDH-FPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIA  459 (479)
T ss_pred             H---HHHH-HHHh-cCCceeeccccccccCChhHHHHHHHHHHHHHhc
Confidence            0   0111 1233 68999999876433 4899999999999987754

>PLN02268 probable polyamine oxidase

Probab=99.95  E-value=2.3e-26  Score=282.67  Aligned_cols=410  Identities=15%  Similarity=0.105  Sum_probs=240.2

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l  788 (1428)
                      .+|||||||+|||+||+.|.++|++|+|||+++++|||++|....|+.+|.|++|++.   .+.+.++++++|+++.   
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~---   77 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLY---   77 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceE---
Confidence            3799999999999999999999999999999999999999988889999999999974   3457889999996432   


Q ss_pred             eEEecCCceEEEeCCC-cEEE-ecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        789 NLLPIKPFYRLYWGKE-KFLN-YEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                         +......+.+.++ ..+. +......        .|  ......+......+......                 ..
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~-----------------~~  127 (435)
T PLN02268         78 ---RTSGDNSVLYDHDLESYALFDMDGNQ--------VP--QELVTKVGETFERILEETEK-----------------VR  127 (435)
T ss_pred             ---eccCCccccccccccccceecCCCCC--------CC--HHHHHHHHHHHHHHHHHHHH-----------------HH
Confidence               1111111111111 0011 0000000        00  00001111111111110000                 00


Q ss_pred             HHhhcccCCHHHHHHhhcCCH-------HHHHHH----HhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKND-------YLKQAF----SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIK  935 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~-------~l~~~l----~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~  935 (1428)
                       .....+.|+.+|+.+.+...       ..+.++    .....+++.++.+.+........ ...++...+.+|++.+++
T Consensus       128 -~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~-~~~g~~~~~~~G~~~l~~  205 (435)
T PLN02268        128 -DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEE-LLEGGHGLMVRGYDPVIN  205 (435)
T ss_pred             -hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCcc-ccCCCceeecCCHHHHHH
Confidence             00123567777765543211       222222    22233456667666542210000 011223567889999999


Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhcCCCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKKKMSN 1014 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~~~~~ 1014 (1428)
                      +|++     |.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+...++ -.+.+|+.+.+.++++.|+ 
T Consensus       206 ~l~~-----~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g-  278 (435)
T PLN02268        206 TLAK-----GLDIRLNHRVTKIVRRYNG-VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVG-  278 (435)
T ss_pred             HHhc-----cCceeCCCeeEEEEEcCCc-EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCcc-
Confidence            9865     5689999999999988776 568888898899999999998887654333 3467888888999999988 


Q ss_pred             ceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545       1015 SLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus      1015 s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
                      +..|+++.|+++ |++. ....++.+.               .....+....      ..+.|+.++++++..+..    
T Consensus       279 ~~~Kv~l~f~~~fw~~~-~~~g~~~~~---------------~~~~~~~~~~------~~~~g~~~l~~~~~g~~a----  332 (435)
T PLN02268        279 IENKIALHFDSVFWPNV-EFLGVVAPT---------------SYGCSYFLNL------HKATGHPVLVYMPAGRLA----  332 (435)
T ss_pred             ceeEEEEEeCCCCCCCC-ceeeccCCC---------------CCCceEEEec------ccCCCCCEEEEEeccHHH----
Confidence            578999999998 4321 111111100               0011111110      012355566655433211    


Q ss_pred             CCc-HHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEE
Q psy10545       1094 INW-SEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYF 1172 (1428)
Q Consensus      1094 ~~~-~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~ 1172 (1428)
                      ..+ ..+++++.+.++++|.+ ++|...+.+... +   ..|....+ ..|+.....++  +.....+..+.| +.+|||
T Consensus       333 ~~~~~~~~~e~~~~v~~~L~~-~~~~~~~p~~~~-~---~~W~~dp~-~~G~~~~~~~g--~~~~~~~~l~~p-~~~l~F  403 (435)
T PLN02268        333 RDIEKLSDEAAANFAMSQLKK-MLPDATEPVQYL-V---SRWGSDPN-SLGCYSYDLVG--KPHDLYERLRAP-VDNLFF  403 (435)
T ss_pred             HHHHhCCHHHHHHHHHHHHHH-HcCCCCCccEEE-e---cccCCCCC-CCccCCCCCCC--CCHHHHHHHhCC-CCCeEE
Confidence            122 23567899999999998 777543222211 1   12322211 13332222222  111122334455 789999


Q ss_pred             ecCCccCC--CCcccccccccccccccc
Q psy10545       1173 VGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1173 aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ||++|...  +.|+||+.||..+|+.|.
T Consensus       404 AGe~ts~~~~g~~eGA~~sG~raA~~v~  431 (435)
T PLN02268        404 AGEATSSDFPGSVHGAYSTGVMAAEECR  431 (435)
T ss_pred             eeccCCCcccccHHHHHHHHHHHHHHHH
Confidence            99998753  369999999999999875

>PLN02568 polyamine oxidase

Probab=99.94  E-value=2.3e-25  Score=274.39  Aligned_cols=298  Identities=14%  Similarity=0.111  Sum_probs=175.7

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCC-----CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC--chHHHHHHHHhc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAG-----ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKLLFDLSK  781 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G-----~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~--~~~~~~l~~~lG  781 (1428)
                      ++.+||||||||++||+||++|++.|     ++|+|||+++++||+++|.+..|+.+|.|++++++  .+.+.++++++|
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g   82 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAG   82 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence            34579999999999999999999888     89999999999999999999999999999999985  567889999999


Q ss_pred             ccccccceEEecCC---ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH
Q psy10545        782 NRMENYVNLLPIKP---FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN  858 (1428)
Q Consensus       782 ~~l~~~l~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  858 (1428)
                      +.... ..+.....   .......+|..++     ....+.+..       .+..+++........ -......++..+.
T Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~d~~~~~  148 (539)
T PLN02568         83 SLESD-EPWECMDGFPDRPKTVAEGGFEVD-----PSIVESIST-------LFRGLMDDAQGKLIE-PSEVDEVDFVKLA  148 (539)
T ss_pred             Ccccc-CcceecccccccceEEccCCcCCC-----HHHHHHHHH-------HHHHHHHHhhccccc-ccccccccccccc
Confidence            63211 11111110   1112223332211     001111110       111111111100000 0000000000000


Q ss_pred             HHHHhhHHHHhhcccCCHHHHHHhhcCC-------H------------H-HHHHHHhhccc--ccCCCCchhHHH-HH-H
Q psy10545        859 DMLFILPKLIKIKAWKSVYSIVSQFIKN-------D------------Y-LKQAFSFNSLF--IGGNPFSTSSIY-TL-I  914 (1428)
Q Consensus       859 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~-------~------------~-l~~~l~~~~~~--~g~~p~~~s~~~-~~-~  914 (1428)
                      .   ...+........|+.+++.+.+..       +            . .+..+......  .+.+....+.+. .. -
T Consensus       149 ~---~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~  225 (539)
T PLN02568        149 A---KAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAES  225 (539)
T ss_pred             h---hccchhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccC
Confidence            0   000000011123556655543311       0            0 01111111000  011222222110 00 0


Q ss_pred             HHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH--
Q psy10545        915 HALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN--  992 (1428)
Q Consensus       915 ~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~--  992 (1428)
                      .+....+..+.++||++.|+++|++.+.  +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+...  
T Consensus       226 ~~~~~~g~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~  302 (539)
T PLN02568        226 EYRMFPGEEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIG  302 (539)
T ss_pred             cceecCCCeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccc
Confidence            0111123456789999999999999885  4579999999999998876 6688889989999999999988877653  


Q ss_pred             ---hcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc
Q psy10545        993 ---LLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus       993 ---Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
                         +.-.|++|..+.++++++.++ .+.|+++.|+++|
T Consensus       303 ~~~i~F~P~LP~~k~~Ai~~l~~g-~~~Ki~l~f~~~f  339 (539)
T PLN02568        303 EDSGLFSPPLPDFKTDAISRLGFG-VVNKLFVELSPRP  339 (539)
T ss_pred             cccceecCCCCHHHHHHHHhcCCc-eeeEEEEEecCCC
Confidence               234467899889999999998 6889999999994

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.94  E-value=1.7e-25  Score=271.45  Aligned_cols=335  Identities=15%  Similarity=0.128  Sum_probs=219.3

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|++|+|+||+|+++|++|+++|++|+|||+.+......                          ...++.|+.++.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~--------------------------~~~~~~r~~~l~~   57 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDA--------------------------DSQPDVRISAISA   57 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccc--------------------------cCCCCceEEeccH
Confidence            45789999999999999999999999999999876431111                          0123556666666


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTV  467 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v  467 (1428)
                      .+...++.|++|+ .+......++..+..+.|....+.++......+..+|+++|..|++.|.+++.+. | .++.+++|
T Consensus        58 ~~~~~l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v  136 (391)
T PRK08020         58 ASVALLKGLGVWD-AVQAMRSHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASL  136 (391)
T ss_pred             HHHHHHHHcCChh-hhhhhhCcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCee
Confidence            6655666778886 3433334556666666776666766544434455678999999999999998765 6 57778999


Q ss_pred             EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545        468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND  534 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1428)
                      +++..+  .  |++.+|.+++|++||+|||.+|.-   .      ..|.|.+..+.++.+.++......  .+.   . .
T Consensus       137 ~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~---~-~  210 (391)
T PRK08020        137 QALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQ--QFT---P-S  210 (391)
T ss_pred             EEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEE--EEc---C-C
Confidence            988643  2  566788899999999999999861   1      134566777776665554332221  111   1 2


Q ss_pred             cceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccc
Q psy10545        535 EYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTIC  610 (1428)
Q Consensus       535 g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~l  610 (1428)
                      |+  .+++|+.+++..+........    ...+.+++.+.+.+.+   +..++++.....+.+|+....++.+..+|++|
T Consensus       211 g~--~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~L  285 (391)
T PRK08020        211 GP--RAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHF---PARLGAVTPVAAGAFPLTRRHALQYVQPGLAL  285 (391)
T ss_pred             CC--EEEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHh---hhhccceEeccccEeecceeehhhhccCcEEE
Confidence            22  345788777655432211110    1123445555554433   44555555555678999877776667799999


Q ss_pred             ccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        611 VGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       611 vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      +|||||.+||++|||++.+++.|..|++.+.    .+.+++...+++.|++ +..+..+.....+.+.++|+....+
T Consensus       286 vGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~  362 (391)
T PRK08020        286 VGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPP  362 (391)
T ss_pred             EechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            9999999999999998755555555554443    3344554555555544 3333444455677788888887654

>PLN02529 lysine-specific histone demethylase 1

Probab=99.93  E-value=1.5e-24  Score=270.98  Aligned_cols=409  Identities=18%  Similarity=0.174  Sum_probs=239.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC--C--eEEcccccccCC--chHHHHHHHHhccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--G--FIFDAGPTVITD--PNSIKLLFDLSKNR  783 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~--G--~~~d~G~~~i~~--~~~~~~l~~~lG~~  783 (1428)
                      ..+||+|||||++||+||..|+++|++|+|+|+++++||+++|...+  |  +.+|.|++|+++  .+++..+.+++|++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~  238 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP  238 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC
Confidence            46799999999999999999999999999999999999999999874  3  489999999986  34577788888865


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      +.      +......++..+|..++...+.     .+.       ..+..+++....+...     ..            
T Consensus       239 ~~------~~~~~~~~~~~~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~-----~~------------  283 (738)
T PLN02529        239 LH------KVRDNCPLYKPDGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQI-----MG------------  283 (738)
T ss_pred             cc------ccCCCceEEeCCCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHh-----cc------------
Confidence            42      2234445666677654322110     000       0111111111111110     00            


Q ss_pred             hHHHHhhcccCCHHHHHHhhc------CCHHHHHHHHhhc-ccccCCCCchhHHHHHHHH-----hccccceeeecCchH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFI------KNDYLKQAFSFNS-LFIGGNPFSTSSIYTLIHA-----LEYEWGIWFPKGGVG  931 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~l~~~~-~~~g~~p~~~s~~~~~~~~-----~~~~~g~~~~~gG~~  931 (1428)
                           ....+.|+.+++.+..      .++.-++++.... ......+...+.+ .+..+     .+..+..+.+.||++
T Consensus       284 -----~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~L-Sl~~~~~~~~~e~~G~~~~i~GG~~  357 (738)
T PLN02529        284 -----GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDL-SAAYWDQDDPYEMGGDHCFLAGGNW  357 (738)
T ss_pred             -----cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHh-hhhHhhhccccccCCceEEECCcHH
Confidence                 0012456666665432      2233333443211 1111222222221 11111     122233467899999


Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhc
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~ 1010 (1428)
                      +|+++|++     +..|++|++|++|..++++ +.|++ +++++.||+||+|+|+..+....+ -.|++|..+.++++++
T Consensus       358 ~Li~aLA~-----~L~IrLnt~V~~I~~~~dG-VtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL  430 (738)
T PLN02529        358 RLINALCE-----GVPIFYGKTVDTIKYGNDG-VEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL  430 (738)
T ss_pred             HHHHHHHh-----cCCEEcCCceeEEEEcCCe-EEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence            99999986     3569999999999998877 45654 455899999999998887764323 3567888999999999


Q ss_pred             CCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCC
Q psy10545       1011 KMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNL 1089 (1428)
Q Consensus      1011 ~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~ 1089 (1428)
                      .|+ ++.+|++.|+++| +.......++..+.             ......++. .+.   . .+.+..++.+++..+..
T Consensus       431 ~yG-~v~KV~L~F~~~FW~~~~~~fG~l~~~~-------------~~~g~~~~~-~~~---~-~~~ggpvLvafv~G~~A  491 (738)
T PLN02529        431 GFG-LLNKVAMVFPSVFWGEELDTFGCLNESS-------------NKRGEFFLF-YGY---H-TVSGGPALVALVAGEAA  491 (738)
T ss_pred             CCc-eeEEEEEEeCCccccCCCCceEEEeccC-------------CCCceEEEE-ecC---C-CCCCCCEEEEEECchhh
Confidence            998 6899999999984 32111111221100             011111222 111   1 12234566666543322


Q ss_pred             CCCCCCcH-HHHHHHHHHHHHHHHhccCCC--c-----cCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCC
Q psy10545       1090 SNSSINWS-EESIKLKNIVFMYLEQYCIPN--L-----RKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPH 1161 (1428)
Q Consensus      1090 ~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~--l-----~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~ 1161 (1428)
                      .    .+. .+++++++.+++.|++ +++.  .     ...+...|..+|.+        .|+.....++..  ......
T Consensus       492 ~----~le~lsdeeii~~vl~~L~~-ifgp~~~~vp~Pi~~v~t~W~~DP~s--------~GsYS~~~~g~~--~~d~~~  556 (738)
T PLN02529        492 Q----RFENTDPSTLLHRVLSVLRG-IYNPKGINVPDPIQTICTRWGSDPLS--------YGSYSHVRVQSS--GSDYDI  556 (738)
T ss_pred             H----HHhcCCHHHHHHHHHHHHHH-HhCccccccCCceEEEEccCCcCCCC--------CCCcccCCCCCc--hhHHHH
Confidence            1    222 2457889999999998 6641  1     11222222222322        233221111110  000011


Q ss_pred             CCCCCCCceEEecCCccCC--CCcccccccccccccccccc
Q psy10545       1162 NRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKLF 1200 (1428)
Q Consensus      1162 ~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~l 1200 (1428)
                      ...|..++|||||++|.++  +.|+||+.||..+|..|...
T Consensus       557 La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~  597 (738)
T PLN02529        557 LAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHV  597 (738)
T ss_pred             HhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence            1222247899999999754  37999999999999988643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.93  E-value=2.7e-25  Score=267.81  Aligned_cols=325  Identities=15%  Similarity=0.109  Sum_probs=220.9

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+||+|+++|+.|+++|++|+|||+.+..                               ..+..|.++|++.+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~-------------------------------~~~~~r~~~l~~~~   51 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRE-------------------------------LLERGRGIALSPNA   51 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccc-------------------------------cccCceeeeecHhH
Confidence            47889999999999999999999999999998322                               11223666666666


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~  469 (1428)
                      ...+...++++ .+.+....+...+.++......+.++........++++++|.+|.+.|.+++.+.+  .++.+++|+.
T Consensus        52 ~~~L~~lG~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~  130 (387)
T COG0654          52 LRALERLGLWD-RLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEA  130 (387)
T ss_pred             HHHHHHcCChh-hhhhccCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEE
Confidence            66455555432 44443444444444444333456666655555678999999999999999998765  6888999999


Q ss_pred             EeCCe----EEEc-CCcEEEeeEEEecCCCCCC--C-C-------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545        470 ITPTS----IRIN-NKKIINANCIIDGRGLKNS--Q-F-------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND  534 (1428)
Q Consensus       470 i~~~~----v~l~-~g~~~~a~lvI~AdG~~S~--~-~-------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1428)
                      ++.++    ++++ ||.+++|++||+|||.+|.  . .       ..|.+..++..+..+.|+.......+..      .
T Consensus       131 ~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~------~  204 (387)
T COG0654         131 VEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTH------A  204 (387)
T ss_pred             EEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecC------C
Confidence            97543    7888 9999999999999999986  1 1       1578888998888876665543322211      1


Q ss_pred             cceEEEEeeCCCCceEE-EeEEeccC---CCCCHHHHHHHHHHHHHHcCCc--cceeeeee-eeeecccCCchhhhhccC
Q psy10545        535 EYHFIYTLPLTPNSLMI-EDTRYTKK---PFLKIDMLKKSIKDYAIKNRWK--LKNIEREE-IGSIPIALKNEKIIKFKK  607 (1428)
Q Consensus       535 g~~f~~~lPl~~~~~~v-~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-~~~~Pl~~~~~~~~~~~r  607 (1428)
                      +  .+.++|++++...+ +.......   ...+.+.+...+.+.+   ++.  ++.+.... ...+|+....+..+..+|
T Consensus       205 ~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~R  279 (387)
T COG0654         205 G--PFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRL---GERDPLGRVTLVSSRSAFPLSLRVAERYRRGR  279 (387)
T ss_pred             C--ceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhc---CcccccceEEEccccccccccchhhhheecCc
Confidence            1  35678998544333 22211111   2234566655665555   667  77665444 569999999888888899


Q ss_pred             cccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        608 TICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      ++|+|||||.+||++|||+|    ||..|++.|+++...+.+   ...++.|++ ++...+....+.+.+.+.|......
T Consensus       280 v~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~  356 (387)
T COG0654         280 VVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPF  356 (387)
T ss_pred             EEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcH
Confidence            99999999999999999977    555555555554432222   444444444 4455556566666677777777763

>PLN02676 polyamine oxidase

Probab=99.93  E-value=9.1e-25  Score=267.93  Aligned_cols=420  Identities=16%  Similarity=0.148  Sum_probs=239.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC-----chHHHHHHHHhccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-----PNSIKLLFDLSKNR  783 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-----~~~~~~l~~~lG~~  783 (1428)
                      .++||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++|+..     .+.+.++.+++|+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~  104 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLR  104 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCc
Confidence            46799999999999999999999998 5999999999999999999999999999999953     45677888888854


Q ss_pred             ccccceEEecCC-ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH
Q psy10545        784 MENYVNLLPIKP-FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF  862 (1428)
Q Consensus       784 l~~~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (1428)
                      ..    ..+.+. ...++..+|+.+.     ....           ..+...+..+.+.............         
T Consensus       105 ~~----~~~~~~~~~~~~~~~g~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~---------  155 (487)
T PLN02676        105 TF----YSDFDNLSSNIYKQDGGLYP-----KKVV-----------QKSMKVADASDEFGENLSISLSAKK---------  155 (487)
T ss_pred             ee----ecCccccceeEECCCCCCCC-----HHHH-----------HHHHHHHHHHHHHHHHHHHhhcccC---------
Confidence            21    111111 1112223444331     0100           1111111111111111000000000         


Q ss_pred             hhHHHHhhcccCCH--HHHHHhhcCCHHHHHHHHhhc--ccccCCCCchhHHHHH-HHHh-ccccceeee--cCchHHHH
Q psy10545        863 ILPKLIKIKAWKSV--YSIVSQFIKNDYLKQAFSFNS--LFIGGNPFSTSSIYTL-IHAL-EYEWGIWFP--KGGVGALI  934 (1428)
Q Consensus       863 ~~~~~~~~~~~~s~--~~~l~~~~~~~~l~~~l~~~~--~~~g~~p~~~s~~~~~-~~~~-~~~~g~~~~--~gG~~~l~  934 (1428)
                              .++.++  .+++.+...............  ..++.++...+..+.. .... ......+.+  ++|+++|+
T Consensus       156 --------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~  227 (487)
T PLN02676        156 --------AVDISILTAQRLFGQVPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLV  227 (487)
T ss_pred             --------CCCccHHHHHHHHhhCCCCHHHHHHHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHH
Confidence                    012222  222333321111111122111  1245666666653321 0111 111223444  68999999


Q ss_pred             HHHHHHHHHc------CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH-hcCCCCCChhHHHHH
Q psy10545        935 KALIKLFQNL------GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN-LLGQYAFGKKKYMNL 1007 (1428)
Q Consensus       935 ~~L~~~l~~~------G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l 1007 (1428)
                      +.|++.+.+.      +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+... +.-.|++|..+.+++
T Consensus       228 ~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai  306 (487)
T PLN02676        228 YYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-VTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAI  306 (487)
T ss_pred             HHHHhhcccccccccCCCceecCCEeeEEEEcCCc-EEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHH
Confidence            9999987543      2679999999999998876 6788999999999999999987766532 334577898888999


Q ss_pred             hhcCCCCceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545       1008 IKKKMSNSLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1008 ~~~~~~~s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
                      +++.++ ...|+++.|+++ |++-.....+...+...        +    ...++...    +.  .+++...+.++...
T Consensus       307 ~~l~~g-~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~--------~----~~~~~~~~----~~--~~~~~~~l~~~~~g  367 (487)
T PLN02676        307 YQFDMA-VYTKIFLKFPYKFWPSGPGTEFFLYAHERR--------G----YYPFWQHL----EN--EYPGSNVLFVTVTD  367 (487)
T ss_pred             HhCCce-eeEEEEEEeCCCCCCCCCCceeeeeecccc--------c----cchhhhhc----cc--CCCCCCEEEEEech
Confidence            999998 689999999999 43211111111111000        0    00011100    11  12233455554432


Q ss_pred             CCCCCCCCCcH-HHHHHHHHHHHHHHHhccCC-CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCC
Q psy10545       1087 PNLSNSSINWS-EESIKLKNIVFMYLEQYCIP-NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRD 1164 (1428)
Q Consensus      1087 p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P-~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t 1164 (1428)
                      +..    ..|+ .++++..+.+++.|.+ +++ .....+....    .+|.... ...|+...+.++..  ....+..+.
T Consensus       368 ~~a----~~~~~~s~e~~~~~vl~~L~~-~~g~~~~~p~~~~~----~~W~~dp-~s~Gsys~~~pG~~--~~~~~~L~~  435 (487)
T PLN02676        368 EES----RRIEQQPDSETKAEIMEVLRK-MFGPNIPEATDILV----PRWWSNR-FFKGSYSNWPIGVS--RYEFDQIRA  435 (487)
T ss_pred             HHH----HHHHhCCHHHHHHHHHHHHHH-HhCCCCCCcceEEe----cccCCCC-CCCcccCCCCCCCC--hhHHHHHhC
Confidence            211    1232 2457788899999998 664 2222111111    1233221 22344222222221  112233445


Q ss_pred             CCCCceEEecCCccCC--CCccccccccccccccccc
Q psy10545       1165 KNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1165 ~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      | +.+|||||++|...  +.|+||+.||..+|..|..
T Consensus       436 P-~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~  471 (487)
T PLN02676        436 P-VGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE  471 (487)
T ss_pred             C-CCceEEeccccccccccchHHHHHHHHHHHHHHHH
Confidence            5 78999999998753  3699999999999988863

>KOG0685|consensus

Probab=99.93  E-value=1.2e-24  Score=246.02  Aligned_cols=438  Identities=16%  Similarity=0.160  Sum_probs=250.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC--chHHHHHHHHhc-cccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKLLFDLSK-NRME  785 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~--~~~~~~l~~~lG-~~l~  785 (1428)
                      ...+|+|||||+|||+||.+|-++|. +|+|||+++|+|||++|....+-.+|.|++|+++  .+++.++.++.| .++.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~   99 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLL   99 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCcccee
Confidence            34589999999999999999997765 7999999999999999999987799999999997  578889999887 2111


Q ss_pred             ccceEEecCCc---eEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH
Q psy10545        786 NYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF  862 (1428)
Q Consensus       786 ~~l~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (1428)
                      .     ...+.   ......+|..++     ..+.+           .+.++.........   ......+..+...++.
T Consensus       100 ~-----~tg~~~~~~~~~~~~g~~V~-----~~~~~-----------~~~~~~~~~~~~~r---~~~~~~~~~SvG~~ln  155 (498)
T KOG0685|consen  100 E-----VTGPAYVDNFHTRSNGEVVP-----EELLD-----------ELNEITVTLSDKLR---EAEIAHDEGSVGEYLN  155 (498)
T ss_pred             c-----cCCccccceeEEEecCccCc-----HHHHH-----------HHHHHHHhhhhhcc---cccccCccccHHHHHH
Confidence            1     11111   111112222211     11111           11111111110000   0001122233333222


Q ss_pred             hhHHHHhh---cccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhcccc--ceeeecCchHHHHHHH
Q psy10545        863 ILPKLIKI---KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEW--GIWFPKGGVGALIKAL  937 (1428)
Q Consensus       863 ~~~~~~~~---~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~--g~~~~~gG~~~l~~~L  937 (1428)
                      .  ++++.   ..+...    .+.+..+.+..++...+.+.+.++.+.-++..+..+.+..+  .....+-|+..+.+.|
T Consensus       156 ~--~~~~~~~~~e~~~~----~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l  229 (498)
T KOG0685|consen  156 S--EFWDELRGPENPEI----DKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLL  229 (498)
T ss_pred             H--HHHHHhccccccch----hhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHH
Confidence            1  11100   000000    11111222333444455555665555444444444444433  3334556788888888


Q ss_pred             HHHHHHc----C--cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHh--cCCCCCChhHHHHHhh
Q psy10545        938 IKLFQNL----G--GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNL--LGQYAFGKKKYMNLIK 1009 (1428)
Q Consensus       938 ~~~l~~~----G--~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~L--l~~~~~p~~~~~~l~~ 1009 (1428)
                      .+.+.+.    |  .+++++++|.+|..++..-+.|++.||+.+.||+||+|++...+....  +-.|++|..+.++|++
T Consensus       230 ~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~  309 (498)
T KOG0685|consen  230 MAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIER  309 (498)
T ss_pred             hccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHh
Confidence            8766542    2  345666999999998644488999999999999999999888766533  3357899999999999


Q ss_pred             cCCCCceEEEEEeecCC-cCC-Ccc-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545       1010 KKMSNSLFVIYFGLSEQ-YTH-LAH-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1010 ~~~~~s~~~v~l~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
                      +.++ ++.|+++.++++ ||. ... ..++...+........   ..|-++...|  .+..    .+|   .++..++.+
T Consensus       310 lgfG-tv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~---~~w~~~~~~f--~~v~----~~~---~vL~gWiaG  376 (498)
T KOG0685|consen  310 LGFG-TVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTL---DAWEEDIMGF--QPVS----WAP---NVLLGWIAG  376 (498)
T ss_pred             ccCC-ccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhh---HHHHhhceEE--EEcC----cch---hhhheeccC
Confidence            9999 688999999999 443 222 2334444422111000   1122222222  2221    122   456666654


Q ss_pred             CCCCCCCCCc-HHHHHHHHHHHHHHHHhccCC-----CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCC
Q psy10545       1087 PNLSNSSINW-SEESIKLKNIVFMYLEQYCIP-----NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRP 1160 (1428)
Q Consensus      1087 p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P-----~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp 1160 (1428)
                      +...    .. ..+++++.+.+...|++ ...     ..+.-+...+...|..-.+|.....|+.-.-.....+   ..|
T Consensus       377 ~~~~----~me~lsdEev~e~~~~~lr~-fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~---p~p  448 (498)
T KOG0685|consen  377 REAR----HMETLSDEEVLEGLTKLLRK-FLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALAL---PLP  448 (498)
T ss_pred             Ccce----ehhhCCHHHHHHHHHHHHHH-hcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhc---cCC
Confidence            3322    22 23568888888888887 443     3333444455555655444443333321111111111   112


Q ss_pred             C-CCCCCCCceEEecCCccCC--CCccccccccccccccccc
Q psy10545       1161 H-NRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1161 ~-~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      . ..+ +-+.+-|||++||..  .+++||+.||++.|+++..
T Consensus       449 ~~~~~-~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~  489 (498)
T KOG0685|consen  449 LTLVT-GRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE  489 (498)
T ss_pred             ccccC-CCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence            2 122 256899999999854  3799999999999998764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.93  E-value=4.3e-24  Score=267.37  Aligned_cols=411  Identities=16%  Similarity=0.118  Sum_probs=236.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCe----EEcccccccCC--chHHHHHHHHhccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGF----IFDAGPTVITD--PNSIKLLFDLSKNR  783 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~----~~d~G~~~i~~--~~~~~~l~~~lG~~  783 (1428)
                      .+.+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|+    .+|.|++|+++  .+.+..+++++|++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~  316 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLP  316 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCc
Confidence            4689999999999999999999999999999999999999999987653    68999999986  34677899999864


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      .      ......+.+++.+|..++...+  .   .+       ...+..+++....+..... ...             
T Consensus       317 ~------~~~~~~~~~~~~dG~~~~~~~~--~---~v-------~~~f~~lL~~~~klr~~~~-~~~-------------  364 (808)
T PLN02328        317 L------HKVRDICPLYLPDGKAVDAEID--S---KI-------EASFNKLLDRVCKLRQAMI-EEV-------------  364 (808)
T ss_pred             e------EecCCCceEEeCCCcCcchhhh--h---hH-------HHHHHHHHHHHHHHHHhhh-hcc-------------
Confidence            2      2233444566677765432110  0   00       0111122222111111000 000             


Q ss_pred             hHHHHhhcccCCHHHHHHhh------cCCHHHHHHHHhhcccc-cCCCCchhHHHHHHHH-----hccccceeeecCchH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQF------IKNDYLKQAFSFNSLFI-GGNPFSTSSIYTLIHA-----LEYEWGIWFPKGGVG  931 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~l~~~~~~~-g~~p~~~s~~~~~~~~-----~~~~~g~~~~~gG~~  931 (1428)
                            ...+.|+.+++.++      ..++..+.++....... .......+.+ .+..+     .+..+..+.+.||++
T Consensus       365 ------~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~L-Sl~~w~qd~~~e~~G~~~~v~GG~~  437 (808)
T PLN02328        365 ------KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNL-SMAYWDQDDPYEMGGDHCFIPGGND  437 (808)
T ss_pred             ------cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHH-HhhhhhccccccCCCeEEEECCcHH
Confidence                  00134555555321      12233333332111100 0111111111 11111     111223557889999


Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH-hcCCCCCChhHHHHHhhc
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN-LLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l~~~ 1010 (1428)
                      .|+++|++.+     .|++|++|++|..++++ +.| +.+|+++.||+||+|+|+..+... +.-.+.+|.++.++++++
T Consensus       438 ~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l  510 (808)
T PLN02328        438 TFVRELAKDL-----PIFYERTVESIRYGVDG-VIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRL  510 (808)
T ss_pred             HHHHHHHhhC-----CcccCCeeEEEEEcCCe-EEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcC
Confidence            9999998865     49999999999998876 345 457889999999999988877642 223467899999999999


Q ss_pred             CCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCC
Q psy10545       1011 KMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNL 1089 (1428)
Q Consensus      1011 ~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~ 1089 (1428)
                      .|+ +..||++.|+++| +.......++.++.           .. ..  .+..+++..    .+.|..++.+++..+..
T Consensus       511 ~yG-~~~KV~L~F~~~FW~~~~d~fG~l~~d~-----------s~-rG--~~~lf~s~s----~~~G~~vLvafv~G~~A  571 (808)
T PLN02328        511 GYG-LLNKVALLFPYNFWGGEIDTFGHLTEDP-----------SM-RG--EFFLFYSYS----SVSGGPLLIALVAGDAA  571 (808)
T ss_pred             CCc-ceEEEEEEeCCccccCCCCceEEEeecC-----------CC-Cc--eEEEEecCC----CCCCCcEEEEEecChhh
Confidence            998 6799999999984 22111111111110           00 01  111122211    12345566666544322


Q ss_pred             CCCCCCc-HHHHHHHHHHHHHHHHhccCCC-------ccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCC
Q psy10545       1090 SNSSINW-SEESIKLKNIVFMYLEQYCIPN-------LRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPH 1161 (1428)
Q Consensus      1090 ~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~-------l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~ 1161 (1428)
                      .    .+ ..+++++++.+++.|.+ +++.       ....++..|...|.+        .|+.....++  +.....+.
T Consensus       572 ~----~~e~lsdeE~v~~vL~~Lr~-ifgp~~~~vp~P~~~~vtrW~~DP~s--------~GSYS~~~pG--~~~~~~~~  636 (808)
T PLN02328        572 V----KFETLSPVESVKRVLQILRG-IFHPKGIVVPDPVQAVCTRWGKDCFT--------YGSYSYVAVG--SSGDDYDI  636 (808)
T ss_pred             H----HHhcCCHHHHHHHHHHHHHH-HhCcccccccCcceEEEecCCCCCCc--------CCCCCCCCCC--CchhHHHH
Confidence            1    22 23457788999999998 5531       112222223333332        2222111121  11101111


Q ss_pred             CCCC-CCCceEEecCCccCC--CCcccccccccccccccccc
Q psy10545       1162 NRDK-NLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKLF 1200 (1428)
Q Consensus      1162 ~~t~-~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~l 1200 (1428)
                      ...| +..+|||||++|...  ++|+||+.||..+|..|...
T Consensus       637 LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~  678 (808)
T PLN02328        637 LAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRV  678 (808)
T ss_pred             HhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence            2222 135899999999743  37999999999999988653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.93  E-value=9.9e-25  Score=262.03  Aligned_cols=320  Identities=15%  Similarity=0.119  Sum_probs=210.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+||+|+++|++|+++|++|+|+|+.+... +                           ...++.|.+++.+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~-~---------------------------~~~~~~r~~~l~~~~   53 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKS-P---------------------------EFFKDIRTTALTPHS   53 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCC-C---------------------------ccCcCceEEEeCHHH
Confidence            367899999999999999999999999999875320 0                           011234556666655


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~  468 (1428)
                      ...++.+++|+ .+. ....++..+.+++..+ ..+.++..  .....+|+|+|.+|++.|.+++.+.+  .++.+++++
T Consensus        54 ~~~L~~lGl~~-~l~-~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~  129 (374)
T PRK06617         54 KNFLFSIDIWE-ELE-KFVAEMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQ  129 (374)
T ss_pred             HHHHHHCCcHH-HHH-hhcCCCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEE
Confidence            55455566665 232 2334566665554332 34555442  22346899999999999999998765  467799999


Q ss_pred             EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      ++..+  .  |+++++ +++||+||+|||.+|..   .      ..| |.++.+.+..+.++.+.....+  .    ..|
T Consensus       130 ~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~--~----~~g  201 (374)
T PRK06617        130 EVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHF--L----PLG  201 (374)
T ss_pred             EEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEe--c----CCC
Confidence            88543  2  666665 89999999999999872   1      123 7788878766666654322221  1    123


Q ss_pred             ceEEEEeeCCCCc-eEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545        536 YHFIYTLPLTPNS-LMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI  609 (1428)
Q Consensus       536 ~~f~~~lPl~~~~-~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~  609 (1428)
                      +  ++++|++++. ..+.++....    ....+.+.+.+.+...+   +..++++.. .+...+|+....+.+...+|++
T Consensus       202 ~--~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~grv~  276 (374)
T PRK06617        202 P--FALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNA---GNSLGKITIDSEISSFPLKARIANRYFHNRIV  276 (374)
T ss_pred             C--EEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhh---chhcCceeeccceeEEEeeeeeccceecCCEE
Confidence            3  6788998764 2222211110    01123344544444333   445555533 3367899987777766779999


Q ss_pred             cccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      |+|||||.+||++|||++.+++.|..|++.+..      ...++.|++ +..+..+.....+.+.++|.+...+
T Consensus       277 LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~  344 (374)
T PRK06617        277 LIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKN  344 (374)
T ss_pred             EEEcccccCCCCccccHHHHHHHHHHHHHHHcC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchH
Confidence            999999999999999999888888888877631      123444443 5566666677888899988877663

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.92  E-value=2.1e-24  Score=260.39  Aligned_cols=331  Identities=14%  Similarity=0.078  Sum_probs=212.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+||+|+++|++|+++|++|+|+|+.+...+..                          ....+.|.+++.+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~--------------------------~~~~~~r~~~l~~~~   57 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEP--------------------------SQPMDIRVSAISQTS   57 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCC--------------------------CCCCCccEEEecHHH
Confidence            478999999999999999999999999999875321110                          001144556666666


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~~  469 (1428)
                      ...++.+++|+ .+......++..+..++.......++.........++++++..|++.|.+++.+. + .++.+++|++
T Consensus        58 ~~~L~~lG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~  136 (384)
T PRK08849         58 VDLLESLGAWS-SIVAMRVCPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLAD  136 (384)
T ss_pred             HHHHHHCCCch-hhhHhhCCccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeE
Confidence            66666677776 4433334555555544332334445433333445678999999999999998664 4 5788999999


Q ss_pred             EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545        470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY  536 (1428)
Q Consensus       470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  536 (1428)
                      ++.+  .  |++.||.+++|++||+|||.+|..   .      ..|.|.++.+.+..+.++.+.....  +.    +.|.
T Consensus       137 ~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~----~~g~  210 (384)
T PRK08849        137 LEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQ--FT----PSGP  210 (384)
T ss_pred             EEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEE--eC----CCCC
Confidence            8643  2  788899999999999999999871   1      1355666666666655554332211  11    1222


Q ss_pred             eEEEEeeCCCCceEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccccc
Q psy10545        537 HFIYTLPLTPNSLMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVG  612 (1428)
Q Consensus       537 ~f~~~lPl~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvG  612 (1428)
                        ..++|+.++...+.+.....    ....+.+.+.+.+.+.+   +..++++.......+|+.....+....+|++|+|
T Consensus       211 --~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LlG  285 (384)
T PRK08849        211 --RSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHF---PAELGEIKVLQHGSFPLTRRHAQQYVKNNCVLLG  285 (384)
T ss_pred             --EEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHh---hhhhCcEEeccceEeeccccccchhccCCEEEEE
Confidence              12368866543322211111    01224555666555544   4455555444567899887777666779999999


Q ss_pred             ccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        613 LRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       613 dAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      ||||.+||++|||++.+++.|..|++++... ..+...+++.|++ +.....+.....+.+.++|+....
T Consensus       286 DAAH~~~P~~GQG~n~al~Da~~L~~~l~~~-~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~  354 (384)
T PRK08849        286 DAAHTINPLAGQGVNLGFKDVDVLLAETEKQ-GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLT  354 (384)
T ss_pred             cccccCCCCccchHhHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch
Confidence            9999999999999988777777777776532 1233445555544 334444455567778888877644

>KOG4411|consensus

Probab=99.92  E-value=2.5e-24  Score=215.80  Aligned_cols=218  Identities=12%  Similarity=0.117  Sum_probs=200.4

Q ss_pred             ccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHH
Q psy10545       1197 IKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK---MKEPAFLALQKIIS 1273 (1428)
Q Consensus      1197 i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~p~~~~l~~~~~ 1273 (1428)
                      ...+|.+.|.++++|-||+.++..|+-+.. .++.       +..+||+||++.+..+|.-.+   ++||++++|...+.
T Consensus        29 ~l~lp~e~r~aafaLrAfNVE~ar~~~d~~-~~p~-------ia~mRL~fW~daIdk~y~~~p~~v~~qPva~aL~~~~~  100 (292)
T KOG4411|consen   29 LLELPTEMRKAAFALRAFNVELARIKVDTR-KGPA-------IAMMRLQFWKDAIDKIYGISPLPVPRQPVAIALCSFAA  100 (292)
T ss_pred             HHhCcHHHHHHHHHHHHhhHHHHHHhhccc-cCcH-------HHHHHHHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHh
Confidence            368899999999999999999999655432 3333       567999999999999887655   78999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHhcchhh
Q psy10545       1274 IHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDD 1353 (1428)
Q Consensus      1274 ~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nilrd~~~d 1353 (1428)
                      .+++.+.++..++++++.|.....|++..||++|.+.+-|++-++.++..|..++.+.++|.|+|.|.+++|.||.++..
T Consensus       101 ~~~~nk~~L~rlV~aR~r~~~d~~fesI~eLeeY~e~TissLL~l~l~agg~~~~~AdhaAshlGkA~gia~llrs~p~~  180 (292)
T KOG4411|consen  101 GHNANKDMLLRLVEARQRTIGDRQFESINELEEYGESTISSLLCLQLDAGGKVLPMADHAASHLGKAYGIANLLRSTPPL  180 (292)
T ss_pred             ccccCHHHHHHHHHHhhcCCcccchHHHHHHHHHHHhHHHHHHHHHHHhcCccccchHHHHHHHhHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCceeecHHHHHhcCCCcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHH
Q psy10545       1354 FYVGRCYLPLDWLRNEGLNKSNFVL-AENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422 (1428)
Q Consensus      1354 ~~~gR~ylP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~ 1422 (1428)
                      ..+|-.|+|.|.+..||+++.|+.. ....+++..++.+++..|..|+..||+.+..+|++.|++++.+.
T Consensus       181 ~~r~~~~iPadv~~lhGvtq~~il~~k~~~~g~~~~~fd~as~an~hL~~AR~l~~kVP~~vrp~ll~tv  250 (292)
T KOG4411|consen  181 LARGIVLIPADVMSLHGVTQLDILYKKKKLDGMVGMTFDLASEANRHLIDARSLIEKVPKAVRPALLATV  250 (292)
T ss_pred             HhCCCccccHHHHHHcCCCHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHhHhhhCCHHHHHHHHHhh
Confidence            9999999999999999999976654 46678999999999999999999999999999999999998763

>PRK08013 oxidoreductase; Provisional

Probab=99.92  E-value=3.2e-24  Score=260.14  Aligned_cols=332  Identities=14%  Similarity=0.088  Sum_probs=203.9

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+||+|+++|++|+++|++|+|||+++.+...            +|.              ..+.|+.++.+.+
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~------------~g~--------------~~~~r~~~l~~~s   57 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLA------------ADA--------------PPALRVSAINAAS   57 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccc------------cCC--------------CCCceeeecchhH
Confidence            57899999999999999999999999999998764100            011              1134555555555


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~  468 (1428)
                      ...+..+++|+ .+......++..+.+++.. ...+.+.....+.+..+++|+|..|++.|.+++.+. + .++.+++|+
T Consensus        58 ~~~L~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~  136 (400)
T PRK08013         58 EKLLTRLGVWQ-DILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQ  136 (400)
T ss_pred             HHHHHHcCCch-hhhhhcCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeE
Confidence            55455556665 3332233455555554432 134444432233344578999999999999999775 5 678899999


Q ss_pred             EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      +++.+.    |++.+|.+++|++||||||.+|..   .      ..+.+.++...++.+.|+.....  ..+.      +
T Consensus       137 ~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~------~  208 (400)
T PRK08013        137 QVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVAR--QVFH------G  208 (400)
T ss_pred             EEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEE--EEEc------C
Confidence            986432    677789999999999999999871   1      13456666666665555443211  1111      1


Q ss_pred             ceEEEEeeCCCCc-eEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545        536 YHFIYTLPLTPNS-LMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI  609 (1428)
Q Consensus       536 ~~f~~~lPl~~~~-~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~  609 (1428)
                      .++++++|++++. ..+........    .....+.+.+.+.+.+   +..++.+.. .....+|+....++....+|++
T Consensus       209 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~  285 (400)
T PRK08013        209 DGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAF---DNRLGLCELESERQVFPLTGRYARQFAAHRLA  285 (400)
T ss_pred             CCCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHH---hHhhCceEecCCccEEecceeecccccCCcEE
Confidence            1245678987643 33322211110    1223345555544332   333333322 2245788887777766779999


Q ss_pred             cccccccccccCCCCChHHHHHHHHHHHhhc----ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        610 CVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      |+|||||.+||++|||+|.+.+.|..|+..+    ..+.+++...+++.|++ +.....+.....+.+.++|.....
T Consensus       286 LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~  362 (400)
T PRK08013        286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNP  362 (400)
T ss_pred             EEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            9999999999999999875555544444444    33444444444555544 333333444455667777766554

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.92  E-value=2.6e-24  Score=260.82  Aligned_cols=333  Identities=14%  Similarity=0.114  Sum_probs=210.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ..|++|+|+||+|+++|+.|+++|++|+|||+.+.+.+           ..+                .++.|..++.+.
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~-----------~~~----------------~~~~r~~~l~~~   58 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRW-----------QAD----------------QPDLRVYAFAAD   58 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCccc-----------ccC----------------CCCCEEEEecHH
Confidence            35789999999999999999999999999999875411           111                123455555555


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                      +...+..+++|+ .+......++..+.+++.. ...+.++.........+++++|..|.+.|.+++.+.| .++.+++|+
T Consensus        59 ~~~~l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~  137 (392)
T PRK08773         59 NAALLDRLGVWP-AVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVV  137 (392)
T ss_pred             HHHHHHHCCchh-hhhHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEE
Confidence            444444455565 3433334455555554432 2345555433333456789999999999999998877 688899999


Q ss_pred             EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      +++.++    |++.+|.+++|++||+|||.+|..   .  .    .+.+.++...++.+.|+.....  ..+.    +.|
T Consensus       138 ~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~----~~g  211 (392)
T PRK08773        138 ALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAW--QRFL----PTG  211 (392)
T ss_pred             EEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEE--EEeC----CCC
Confidence            886432    566788899999999999999751   1  1    1334455555555555543211  1121    122


Q ss_pred             ceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCccc
Q psy10545        536 YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTIC  610 (1428)
Q Consensus       536 ~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~l  610 (1428)
                        .++++|++++...+.+......    ...+.+.+.+.+.+.+   +..++.+.. .....+|+..........+|++|
T Consensus       212 --~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~L  286 (392)
T PRK08773        212 --PLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAF---AARLGEVRVASPRTAFPLRRQLVQQYVSGRVLT  286 (392)
T ss_pred             --cEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhhcCeEecCCccEeechhhhhhhhcCCcEEE
Confidence              3567898877655433321110    1123345555555544   333344422 22457888776666667799999


Q ss_pred             ccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhcccc
Q psy10545        611 VGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKKFI-INHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       611 vGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      +|||||.+||++|||++    ||..|++.|.+....+.+++...+++.|++.+ .+........+.|+++|++...+
T Consensus       287 iGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~  363 (392)
T PRK08773        287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMH  363 (392)
T ss_pred             EechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            99999999999999976    56666666665544455566665666665533 33233444557888998888764

>PLN03000 amine oxidase

Probab=99.92  E-value=1.1e-23  Score=262.57  Aligned_cols=413  Identities=17%  Similarity=0.167  Sum_probs=231.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC----CeEEcccccccCC--chHHHHHHHHhccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD----GFIFDAGPTVITD--PNSIKLLFDLSKNR  783 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~----G~~~d~G~~~i~~--~~~~~~l~~~lG~~  783 (1428)
                      ...+|+|||||++||+||+.|++.|++|+|+|+++++|||+.|.+..    |+.+|.|++|+++  .+++..+++++|++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~  262 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS  262 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence            35799999999999999999999999999999999999999999864    5789999999986  45677888999965


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      +..      ......++..+|+.++  .+..   ..+.       ..+..+++.+..+... ....  ..-.++...+. 
T Consensus       263 l~~------~~~~~~ly~~~Gk~v~--~~~~---~~ve-------~~fn~lLd~~~~lr~l-~~~~--~~D~SLg~aLe-  320 (881)
T PLN03000        263 LYK------VRDKCPLYRVDGKPVD--PDVD---LKVE-------VAFNQLLDKASKLRQL-MGDV--SMDVSLGAALE-  320 (881)
T ss_pred             eee------cCCCCeEEEeCCcCCc--hhhh---hhHH-------HHHHHHHHHHHHHHHH-hccc--CcCCcHHHHHH-
Confidence            432      2222334455665432  1100   0000       0111222222111110 0000  00011111110 


Q ss_pred             hHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhc-ccccCCCCchhHHHHHH-HH---hccccceeeecCchHHHHHHHH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS-LFIGGNPFSTSSIYTLI-HA---LEYEWGIWFPKGGVGALIKALI  938 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~-~~~g~~p~~~s~~~~~~-~~---~~~~~g~~~~~gG~~~l~~~L~  938 (1428)
                                 .+.+++...+.++ ...++.... ..........+.+.... ..   .+..+..+.++||++.|+++|+
T Consensus       321 -----------~~~~~~g~~~t~e-~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa  388 (881)
T PLN03000        321 -----------TFRQVSGNDVATE-EMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALA  388 (881)
T ss_pred             -----------HHHHHHcccCCHH-HHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHH
Confidence                       1111111111111 111111000 00011111122111110 00   1112235578899999999999


Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH-HhcCCCCCChhHHHHHhhcCCCCceE
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR-NLLGQYAFGKKKYMNLIKKKMSNSLF 1017 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~-~Ll~~~~~p~~~~~~l~~~~~~~s~~ 1017 (1428)
                      +.+     .|++|++|++|..++++ +.|++.+ +++.||+||+|+|+..+.. .+.-.|++|.++.++++++.|+ ...
T Consensus       389 ~~L-----~I~Ln~~Vt~I~~~~dg-V~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G-~l~  460 (881)
T PLN03000        389 ENV-----PILYEKTVQTIRYGSNG-VKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG-LLN  460 (881)
T ss_pred             hhC-----CcccCCcEEEEEECCCe-EEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCc-ceE
Confidence            866     49999999999998776 5566644 5899999999998887663 2333577899999999999998 689


Q ss_pred             EEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC-CCccEEEEEEecCCCCCCCCC
Q psy10545       1018 VIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP-TGCSTFYALIPVPNLSNSSIN 1095 (1428)
Q Consensus      1018 ~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap-~G~~~l~v~~~~p~~~~~~~~ 1095 (1428)
                      ||++.|+++| +.-.....++.++.             ......+ .+.+     ..| .|..++.+++..+..    ..
T Consensus       461 KViL~Fd~~FW~~d~~~FG~l~~~~-------------~~rg~~~-~f~s-----~sp~~G~pVLvafv~Gd~A----~~  517 (881)
T PLN03000        461 KVAMLFPYVFWSTDLDTFGHLTEDP-------------NYRGEFF-LFYS-----YAPVAGGPLLIALVAGEAA----HK  517 (881)
T ss_pred             EEEEEeCCccccCCCCceeEEecCC-------------CCCceeE-EEeC-----CCCCCCCcEEEEEecCchh----HH
Confidence            9999999994 32111111111100             0011111 2222     222 355566666644322    12


Q ss_pred             cH-HHHHHHHHHHHHHHHhccCCC--c--cCc---eEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCC-C
Q psy10545       1096 WS-EESIKLKNIVFMYLEQYCIPN--L--RKK---LITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDK-N 1166 (1428)
Q Consensus      1096 ~~-~~~ee~~~~vl~~L~~~~~P~--l--~~~---i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~-~ 1166 (1428)
                      ++ .+++++.+.+++.|++ +++.  .  .+.   ++..|..+|.+        .|++....++  +....+.....| +
T Consensus       518 le~lSdeE~ve~vl~~Lrk-ifg~~~~~vp~Pv~~ivtrW~~DPys--------rGSYS~~~pG--~~~~~~d~LaePv~  586 (881)
T PLN03000        518 FETMPPTDAVTRVLHILRG-IYEPQGINVPDPLQTVCTRWGGDPFS--------LGSYSNVAVG--ASGDDYDILAESVG  586 (881)
T ss_pred             hhcCCHHHHHHHHHHHHHH-HhCccccccCCceEEEEccCCCCCCC--------CccccCCCCC--CchHHHHHHhCcCC
Confidence            32 3567888999999998 6641  1  122   22222233332        3332222222  111111222233 1


Q ss_pred             CCceEEecCCccCC--CCcccccccccccccccc
Q psy10545       1167 LTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1167 i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ..+|||||++|...  ++|+||++||..+|..|.
T Consensus       587 ~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl  620 (881)
T PLN03000        587 DGRLFFAGEATTRRYPATMHGAFVTGLREAANMA  620 (881)
T ss_pred             CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHH
Confidence            35899999998642  379999999999999885

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.92  E-value=8e-24  Score=259.06  Aligned_cols=340  Identities=14%  Similarity=0.074  Sum_probs=213.6

Q ss_pred             HHHHhcCCchHHHHHHHHhh----cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        313 IRIFSGAGIGGIALAIRLQT----AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~----~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      |++|+|+||+|+++|++|++    +|++|+|||+++.+...             +++...       .....+.|.+++.
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~-------------~~~~~~-------~~~~~~~R~~~l~   61 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLK-------------SRNYEK-------PDGPYSNRVSSIT   61 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccc-------------cccccC-------CCCCCCCCeEEcC
Confidence            68899999999999999999    89999999996544100             000000       0000245677777


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC---C-eEEe
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN---N-FLFN  463 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---~-~~~~  463 (1428)
                      +.+...+..+++|+ .+......++..+.+++... ..+.|+... .....+++|+|..|.+.|.+++.+.   + .++.
T Consensus        62 ~~s~~~L~~lG~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~  139 (437)
T TIGR01989        62 PASISFFKKIGAWD-HIQSDRIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILN  139 (437)
T ss_pred             HHHHHHHHHcCchh-hhhhhcCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEec
Confidence            76666555666676 44333344555555544332 345555432 2334688999999999999998764   3 5788


Q ss_pred             cceEEEEeC---------Ce--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecC-CcCCCCc
Q psy10545        464 NKTVEIITP---------TS--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSS-PHGLDIP  522 (1428)
Q Consensus       464 ~~~v~~i~~---------~~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~-~~~~~~~  522 (1428)
                      +++|++++.         +.  |++.+|++++|++||+|||.+|..   .      ..|.|.++...+.++. +++....
T Consensus       140 ~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~  219 (437)
T TIGR01989       140 PARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAW  219 (437)
T ss_pred             CCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEE
Confidence            999999852         12  677889999999999999999871   1      1366778877776654 3433222


Q ss_pred             eEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHH---------------------H
Q psy10545        523 IIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAI---------------------K  577 (1428)
Q Consensus       523 ~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~---------------------~  577 (1428)
                      ..  |.   . .|  .+.++|++++...+.+......    ..++.+.+.+.+.+.+.                     .
T Consensus       220 ~~--f~---~-~g--~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~  291 (437)
T TIGR01989       220 QR--FL---P-TG--PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNED  291 (437)
T ss_pred             EE--EC---C-CC--CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            21  21   1 23  3567899887655433322111    12345666666644430                     0


Q ss_pred             cCCcc-------------ceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HHHHHHHHHHhhc
Q psy10545        578 NRWKL-------------KNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYS  640 (1428)
Q Consensus       578 ~~~~~-------------~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~  640 (1428)
                      .++..             ..+.......+|+....+.....+|++++|||||.+||++|||++    ||..|++.|++..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~  371 (437)
T TIGR01989       292 IGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAV  371 (437)
T ss_pred             ccccccccccccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence            01110             111222346889988877766779999999999999999999977    5555555555544


Q ss_pred             ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        641 ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       641 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      ..+.+++...+++.|++ ++........+.+.+.++|.+...+
T Consensus       372 ~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~  414 (437)
T TIGR01989       372 SVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPP  414 (437)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence            44445554444555544 4444555555777788888877653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.91  E-value=8.7e-24  Score=257.13  Aligned_cols=330  Identities=15%  Similarity=0.106  Sum_probs=205.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCC-CCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQR-DKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~-~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +|++|+|+||+|+++|++|+++|++|+|+|++ +.+ ..                           ...++.|..++...
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~-~~---------------------------~~~~~~r~~~l~~~   56 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEE-AL---------------------------NELPDVRVSALSRS   56 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcc-cc---------------------------cCCCCcceecccHH
Confidence            57899999999999999999999999999986 322 00                           01234566666665


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v  467 (1428)
                      +...++.+++|+ .+......++..+.+++... ..+.++......+..++++++..|++.|.+++.+. + .++.+++|
T Consensus        57 ~~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v  135 (405)
T PRK08850         57 SEHILRNLGAWQ-GIEARRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARC  135 (405)
T ss_pred             HHHHHHhCCchh-hhhhhhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCee
Confidence            555555666676 44333345555555554322 45555543333345688999999999999999764 4 57889999


Q ss_pred             EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545        468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND  534 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1428)
                      ++++.+  .  |++.+|++++|++||+|||.+|..   .      ..+.+.++...+..+.++....  ...+.   . .
T Consensus       136 ~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~---~-~  209 (405)
T PRK08850        136 QSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVA--RQIFT---P-Q  209 (405)
T ss_pred             EEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEE--EEEEc---C-C
Confidence            998643  2  677889999999999999999861   1      1245566666665555544321  12222   1 2


Q ss_pred             cceEEEEeeCCCC-ceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCc
Q psy10545        535 EYHFIYTLPLTPN-SLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKT  608 (1428)
Q Consensus       535 g~~f~~~lPl~~~-~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv  608 (1428)
                      |  ++.++|++++ ..++.+......    ...+.+++.+.+.+.+   +..++.+.. .....+|+..........+|+
T Consensus       210 g--~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv  284 (405)
T PRK08850        210 G--PLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEF---DNRLGLCEVVGERQAFPLKMRYARDFVRERV  284 (405)
T ss_pred             C--ceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhhCcEEEcccccEEecceeeccccccCcE
Confidence            2  2456788754 333322211110    1223345555555543   333333322 234578887777666677999


Q ss_pred             ccccccccccccCCCCChHHHHH----HHHHHHhhcccCCCCChhHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhccc
Q psy10545        609 ICVGLRANLLHATTGYSLPIAIQ----LAENIAKYSITTNQINSTVLFKLVKKF-IINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       609 ~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      +|+|||||.+||++|||++.+++    |++.|......+.+.+....++.|++. +....+.....+.+.++|.....
T Consensus       285 ~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~  362 (405)
T PRK08850        285 ALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNP  362 (405)
T ss_pred             EEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCch
Confidence            99999999999999999775544    555554433334444444455555443 33333444466678888876654

>KOG0029|consensus

Probab=99.91  E-value=4.6e-23  Score=248.80  Aligned_cols=427  Identities=16%  Similarity=0.143  Sum_probs=228.1

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE-EcccccccCC--chHHHHHHHHhcccc
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI-FDAGPTVITD--PNSIKLLFDLSKNRM  784 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~-~d~G~~~i~~--~~~~~~l~~~lG~~l  784 (1428)
                      .+.+++|||||||+|||+||.+|.+.|++|+|||+++++|||++|++..+.. +|.|++++++  .+++.-+.+++|++.
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~   91 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLEL   91 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccc
Confidence            3456899999999999999999999999999999999999999999987666 9999999986  458888999999654


Q ss_pred             cccceEEecCCceEEEeCCC-cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        785 ENYVNLLPIKPFYRLYWGKE-KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       785 ~~~l~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      ..   .....+.   +..++ .......+.             .......++....................++.+....
T Consensus        92 ~~---~~~~~~l---~~~~~~~~~~~~d~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  152 (501)
T KOG0029|consen   92 YK---VRDTCPL---FNENGGESDKVFDDF-------------VEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEA  152 (501)
T ss_pred             ce---ecccccc---cccCCcccccccccc-------------hhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHh
Confidence            32   1111111   11111 111100000             0000111111111111110000000001111111110


Q ss_pred             hHHHHhhcccCCHHHHHHhhc-CCHHHHHHHHhhcccccCCCCchhHHHH-HHHHhccccceeeecCchHHHHHHHHHHH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFI-KNDYLKQAFSFNSLFIGGNPFSTSSIYT-LIHALEYEWGIWFPKGGVGALIKALIKLF  941 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~-~~~~l~~~l~~~~~~~g~~p~~~s~~~~-~~~~~~~~~g~~~~~gG~~~l~~~L~~~l  941 (1428)
                      .......   .....+..... ....+...+..........-...+..+. ...............+|+..+...+++  
T Consensus       153 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~--  227 (501)
T KOG0029|consen  153 FLSASRL---MKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE--  227 (501)
T ss_pred             HHHHHHH---HHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCC--
Confidence            0000000   00000111000 1111111111111111111111111111 111111111123567889888888876  


Q ss_pred             HHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhcCCCCceEEEE
Q psy10545        942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKKKMSNSLFVIY 1020 (1428)
Q Consensus       942 ~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~~~~~s~~~v~ 1020 (1428)
                         |.+|++++.|.+|.+.++..+.|++.++..+.+|.||+|+|...+....+ -.|++|.++.++|+++..+ .+.+|.
T Consensus       228 ---~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g-~~~Kv~  303 (501)
T KOG0029|consen  228 ---GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFG-LVNKVI  303 (501)
T ss_pred             ---CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCC-ceeEEE
Confidence               89999999999999987664456666776799999999998888776344 3577899999999999988 689999


Q ss_pred             EeecCCcCCCcceEEE--cCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHH
Q psy10545       1021 FGLSEQYTHLAHHTIF--FPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSE 1098 (1428)
Q Consensus      1021 l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~ 1098 (1428)
                      +.|++.+-+ +....|  ...+...       ++    ...++.+.+.        .+...++..+......   .-...
T Consensus       304 l~F~~~fW~-~~~d~fg~~~~~~~~-------~~----~~~f~~~~~~--------~~~~~l~~~~~~~~a~---~~~~~  360 (501)
T KOG0029|consen  304 LEFPRVFWD-QDIDFFGIVPETSVL-------RG----LFTFYDCKPV--------AGHPVLMSVVVGEAAE---RVETL  360 (501)
T ss_pred             EEeccccCC-CCcCeEEEccccccc-------cc----hhhhhhcCcc--------CCCCeEEEEehhhhhH---HHhcC
Confidence            999999421 111111  1111000       00    0011111111        1222344433221111   11234


Q ss_pred             HHHHHHHHHHHHHHhccCCC--cc---CceEEEEecCcccHHHHhCCCCCccccccccc--ccccccCCCCCCCCCCc-e
Q psy10545       1099 ESIKLKNIVFMYLEQYCIPN--LR---KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLL--TQSAWFRPHNRDKNLTN-L 1170 (1428)
Q Consensus      1099 ~~ee~~~~vl~~L~~~~~P~--l~---~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~--~q~~~~rp~~~t~~i~~-L 1170 (1428)
                      ++++.++.++..|++ .+++  ..   +..+..+...+..        .|+..-.....  .+.    +..+.| +.| +
T Consensus       361 ~~~~~~~~~~~~l~k-~f~~~~~~~p~~~~vt~w~~d~~~--------~gsys~~~~~~~~~~y----~~l~~p-i~~~~  426 (501)
T KOG0029|consen  361 SDSEIVKKAMKLLRK-VFGSEEVPDPLDALVTRWGTDPLS--------GGSYSYVAVGSDGDDY----DRLAEP-IKNRV  426 (501)
T ss_pred             CHHHHHHHHHHHHHH-HhccCcCCCccceeeeeecccccC--------CccccccCCCCChhHH----HHHhcc-ccCcE
Confidence            678899999999998 7772  22   2223333333322        22211111111  110    112344 777 9


Q ss_pred             EEecCCccCC--CCccccccccccccccccc
Q psy10545       1171 YFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1171 y~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      ||||++|...  +.|+||+.||..+|..|..
T Consensus       427 ffage~t~~~~~~tm~GA~~sG~~~a~~i~~  457 (501)
T KOG0029|consen  427 FFAGEATSRKYPGTMHGAYLSGLRAASDILD  457 (501)
T ss_pred             EecchhhcccCCCchHHHHHhhHHHHHHHHH
Confidence            9999998643  3799999999999998863

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.91  E-value=1.8e-22  Score=248.00  Aligned_cols=398  Identities=16%  Similarity=0.147  Sum_probs=236.0

Q ss_pred             HHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE--EcccccccCC-chHHHHHHHHhcccccccceEEecCCceEEEe
Q psy10545        725 ALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI--FDAGPTVITD-PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYW  801 (1428)
Q Consensus       725 sAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~--~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~  801 (1428)
                      +||++|+++|++|+|||+++++||++.|++.+|+.  +|.|+|++.. ...+.++++++|++..  ... +.. ...+..
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~--~~~-~~~-~~~~~~   76 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPR--LQG-PRL-PLPFYD   76 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchh--hhc-ccC-Ccceec
Confidence            58999999999999999999999999999988654  9999999875 3457889999996432  111 111 122222


Q ss_pred             CCCcEEEecCC----HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhhcccCCHH
Q psy10545        802 GKEKFLNYEDN----IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVY  877 (1428)
Q Consensus       802 ~~g~~~~~~~~----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  877 (1428)
                      +++....+..+    +......+.....-......++...+..+...                      .....+..|+.
T Consensus        77 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~s~~  134 (419)
T TIGR03467        77 PGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRT----------------------RFRALDDTTVG  134 (419)
T ss_pred             CCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc----------------------CccccCCCCHH
Confidence            33332111110    00001111111110111111111111100000                      00112468999


Q ss_pred             HHHHhhcCCHHH-HHHHHh-hcccccCCCCchhHHHHHHH----Hhc--cccceeeecCchHHHH-HHHHHHHHHcCcEE
Q psy10545        878 SIVSQFIKNDYL-KQAFSF-NSLFIGGNPFSTSSIYTLIH----ALE--YEWGIWFPKGGVGALI-KALIKLFQNLGGNL  948 (1428)
Q Consensus       878 ~~l~~~~~~~~l-~~~l~~-~~~~~g~~p~~~s~~~~~~~----~~~--~~~g~~~~~gG~~~l~-~~L~~~l~~~G~~V  948 (1428)
                      +|+.+++.++.+ +.++.. ....++.+|++.++.+....    +..  ...+.++++||++++. +.|++.+++.|++|
T Consensus       135 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i  214 (419)
T TIGR03467       135 DWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEV  214 (419)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEE
Confidence            999998755444 445553 34556778888886433221    111  1124678999988766 55999999999999


Q ss_pred             EeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-
Q psy10545        949 ILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY- 1027 (1428)
Q Consensus       949 ~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~- 1027 (1428)
                      ++|++|++|..+++++..+...+|+++.||+||+|+|+..+.. +++++    ...+.+++++|. ++.++++.+++++ 
T Consensus       215 ~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~-ll~~~----~~~~~l~~~~~~-~~~~v~l~~~~~~~  288 (419)
T TIGR03467       215 RLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAAS-LLPGE----DLGALLTALGYS-PITTVHLRLDRAVR  288 (419)
T ss_pred             EcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHH-hCCCc----hHHHHHhhcCCc-ceEEEEEEeCCCcC
Confidence            9999999999988874433335777899999999998887765 66542    345678889888 5779999999985 


Q ss_pred             CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHH
Q psy10545       1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIV 1107 (1428)
Q Consensus      1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~v 1107 (1428)
                      .+.+. ..+..                  .+..++...+.    ..+ ....+.+++..  ..   ..++.+++++.+.+
T Consensus       289 ~~~~~-~~~~~------------------~~~~~~~~~~~----~~~-~~~~~~~~~~~--~~---~~~~~~~e~~~~~~  339 (419)
T TIGR03467       289 LPAPM-VGLVG------------------GLAQWLFDRGQ----LAG-EPGYLAVVISA--AR---DLVDLPREELADRI  339 (419)
T ss_pred             CCCCe-eeecC------------------CceeEEEECCc----CCC-CCCEEEEEEec--ch---hhccCCHHHHHHHH
Confidence            22221 11111                  11122222111    111 12333333322  11   12344568999999


Q ss_pred             HHHHHhccCCCccC-ceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCC--CCcc
Q psy10545       1108 FMYLEQYCIPNLRK-KLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG--AANK 1184 (1428)
Q Consensus      1108 l~~L~~~~~P~l~~-~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg--~gv~ 1184 (1428)
                      +++|++ ++|.... .++...+.         .... +.+...++..   ..+|...+| ++|||||||+++++  ..|+
T Consensus       340 l~~l~~-~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~g~~---~~~~~~~~~-~~~l~~aGd~~~~~~~~~~e  404 (419)
T TIGR03467       340 VAELRR-AFPRVAGAKPLWARVI---------KEKR-ATFAATPGLN---RLRPGARTP-WPNLFLAGDWTATGWPATME  404 (419)
T ss_pred             HHHHHH-hcCccccCCccceEEE---------EccC-CccccCCccc---ccCCCCCCC-cCCEEEecccccCCCcchHH
Confidence            999998 8886521 12221111         1111 1223222221   235666665 89999999999865  2689


Q ss_pred             cccccccccccccc
Q psy10545       1185 IIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1185 GA~~sg~~~a~~i~ 1198 (1428)
                      ||+.||..+|+.|.
T Consensus       405 gA~~SG~~aA~~i~  418 (419)
T TIGR03467       405 GAVRSGYQAAEAVL  418 (419)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.91  E-value=6.9e-23  Score=233.14  Aligned_cols=425  Identities=15%  Similarity=0.098  Sum_probs=238.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      ++..||||||||++||+||+.|.++|++|+|+|+++++|||+.+.+..|-..|.|.+++.. .+.+..++++.|+...+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f   84 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF   84 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence            5678999999999999999999999999999999999999999999988889999888865 456778888888765432


Q ss_pred             ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545        788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL  867 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (1428)
                         +... .+...+.. .....   +..        +......+............. ...+  .+...        +..
T Consensus        85 ---i~~g-~~~~~~~~-~~~~~---p~~--------~~~~~~d~~~~~~~~~~~a~~-~~~~--~~~~t--------~~~  137 (450)
T COG1231          85 ---IRDG-DNVIGYVG-SSKST---PKR--------SLTAAADVRGLVAELEAKARS-AGEL--DPGLT--------PED  137 (450)
T ss_pred             ---eccC-cccccccc-ccccc---chh--------ccchhhhhcchhhhhhhhhhc-cccc--CcccC--------cch
Confidence               1111 11000100 00000   000        000000000000000000000 0000  00000        000


Q ss_pred             HhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHH---HHHHH------Hhc--cccceeeecCchHHHHHH
Q psy10545        868 IKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSI---YTLIH------ALE--YEWGIWFPKGGVGALIKA  936 (1428)
Q Consensus       868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~---~~~~~------~~~--~~~g~~~~~gG~~~l~~~  936 (1428)
                      ..+ +.+++..| . ......+...+..........+.+....   .....      ...  ...-.+.+.|||+.|+++
T Consensus       138 ~e~-~~~~~~~W-~-~~~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~A  214 (450)
T COG1231         138 REL-DLESLAAW-K-TSSLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEA  214 (450)
T ss_pred             hhh-hhHHHHhh-h-hccccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHH
Confidence            001 13344444 1 0001111111100000001122222211   11100      000  011124456999999999


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
                      +++++   |-.|+++++|.+|..++++ +.|++.+..++.+|+||+|+|+..+.. +--.+.+++.+.+++....|+ +.
T Consensus       215 fa~ql---~~~I~~~~~V~rI~q~~~g-V~Vt~~~~~~~~ad~~i~tiPl~~l~q-I~f~P~l~~~~~~a~~~~~y~-~~  288 (450)
T COG1231         215 FAKQL---GTRILLNEPVRRIDQDGDG-VTVTADDVGQYVADYVLVTIPLAILGQ-IDFAPLLPAEYKQAAKGVPYG-SA  288 (450)
T ss_pred             HHHHh---hceEEecCceeeEEEcCCe-EEEEeCCcceEEecEEEEecCHHHHhh-cccCCCCCHHHHHHhcCcCcc-hh
Confidence            99887   4789999999999998887 668887756899999999997765554 544557888888999998888 67


Q ss_pred             EEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEe-cCCCCCCCC
Q psy10545       1017 FVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIP-VPNLSNSSI 1094 (1428)
Q Consensus      1017 ~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~-~p~~~~~~~ 1094 (1428)
                      .++.+.++++| .+-.                ++......+.+..+++.+|. ...   +|..++..+.. ...    ..
T Consensus       289 ~K~~v~f~rpFWee~~----------------~l~G~~~tD~~~~~i~~~s~-~~~---~G~gVl~g~~~~g~~----A~  344 (450)
T COG1231         289 TKIGVAFSRPFWEEAG----------------ILGGESLTDLGLGFISYPSA-PFA---DGPGVLLGSYAFGDD----AL  344 (450)
T ss_pred             eeeeeecCchhhhhcc----------------cCCceEeecCCcceEecCcc-ccC---CCceEEEeeeecccc----ce
Confidence            89999999995 2111                01111123445667887775 211   45555554322 221    23


Q ss_pred             CcHH-HHHHHHHHHHHHHHhccCCCc-cCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEE
Q psy10545       1095 NWSE-ESIKLKNIVFMYLEQYCIPNL-RKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYF 1172 (1428)
Q Consensus      1095 ~~~~-~~ee~~~~vl~~L~~~~~P~l-~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~ 1172 (1428)
                      .|+. +.++.++.++..+.+ ++|+- .+.....   .-.+|.++.+.. |+.-.+.++..  ..+-|....| .+++||
T Consensus       345 ~~~~~~~~~r~~~vl~~l~~-~~g~~a~~~f~~~---~~~~W~~dpwt~-G~~aa~~~g~~--~~~~~~l~~p-~gRIh~  416 (450)
T COG1231         345 VIDALPEAERRQKVLARLAK-LFGDEAADPFDYG---ASVDWSKDPWTL-GGTAAYPPGQR--TKLYPTLPAP-HGRIHF  416 (450)
T ss_pred             eEecCCHHHHHHHHHHhHhh-hCChhhccccccc---eeeecccCCcCC-ccccccCCccc--ccccccccCC-CCceEE
Confidence            4543 457788999999998 88843 3333221   112333333332 22111222211  1122333444 789999


Q ss_pred             ec-CCcc-CCCCccccccccccccccccccc
Q psy10545       1173 VG-AGTH-PGAANKIIKAGSKSFSSAIKLFD 1201 (1428)
Q Consensus      1173 aG-d~t~-pg~gv~GA~~sg~~~a~~i~~l~ 1201 (1428)
                      || +++. .++.++||+.||..+|..|.++.
T Consensus       417 AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l  447 (450)
T COG1231         417 AGTEHASEFGGWLEGAIRSGQRAAAEIHALL  447 (450)
T ss_pred             eeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence            99 6653 35579999999999999987654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.91  E-value=1.6e-23  Score=254.00  Aligned_cols=326  Identities=13%  Similarity=0.077  Sum_probs=201.8

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .+|+||+|+||+|+++|+.|+++|++|+|||+.+.+           .. ..+.+++....                   
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~-----------~~-~r~~~l~~~s~-------------------   55 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY-----------AD-LRTTALLGPSI-------------------   55 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC-----------CC-cchhhCcHHHH-------------------
Confidence            358999999999999999999999999999998644           10 11223333211                   


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCcc-----EEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-----QVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNN  464 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~  464 (1428)
                        ..++.+++|+ .+. ....++..+.+++..+.     ...++..+......+|++++..+.+.|.+++.+.+ +.+.+
T Consensus        56 --~~l~~lgl~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~  131 (388)
T PRK07494         56 --RFLERLGLWA-RLA-PHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFG  131 (388)
T ss_pred             --HHHHHhCchh-hhH-hhcceeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEEC
Confidence              1122233443 221 12234444444332211     22333322233446789999999999999997764 55778


Q ss_pred             ceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCC
Q psy10545        465 KTVEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       465 ~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      ++|++++.+  .  |++++|.+++||+||+|||.+|..   .      ..+.|.++.+.+..+.|+......++      
T Consensus       132 ~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------  205 (388)
T PRK07494        132 DEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH------  205 (388)
T ss_pred             CeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe------
Confidence            999998633  2  667788899999999999999761   1      13567777777766555543221111      


Q ss_pred             CCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhcc
Q psy10545        532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFK  606 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~  606 (1428)
                      .+.|+  ++++|++++...+.+......    ...+.+++.+.+.+.+   +..++.+.. .....+|+....+.....+
T Consensus       206 ~~~g~--~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  280 (388)
T PRK07494        206 TEGGP--FTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERM---QSMLGKLTLEPGRQAWPLSGQVAHRFAAG  280 (388)
T ss_pred             CCCCc--EEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhcCCeEEccCCcEeechHHHHHhhccC
Confidence            11333  556788776654432211111    1234566666666554   333344432 2356899987777656679


Q ss_pred             CcccccccccccccCCCCChHHHHHHHHHHHhhccc-CCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        607 KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-TNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      |++++|||||.+||++|||++.+++.|..|++.+.. ..+.+....++.|++ +...........+.+++.|.+...+
T Consensus       281 rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~  358 (388)
T PRK07494        281 RTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLP  358 (388)
T ss_pred             ceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            999999999999999999988766666666666543 123333434444433 2333334556778888888888764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.90  E-value=2.8e-23  Score=253.07  Aligned_cols=335  Identities=15%  Similarity=0.111  Sum_probs=202.3

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+||+|+++|++|+++|++|+|+|+.+....+   +..+....+.+.++.                     +.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~---~~~~~~~~~r~~~l~---------------------~~~   58 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKP---FDPQAPFEPRVSALS---------------------AAS   58 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccc---cccCCCCCccchhhh---------------------HHH
Confidence            47899999999999999999999999999988632000   000011122333333                     333


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                      ...++.|++|+ .+.+....|+..+.+++..+ ..+.|+......+..+++++|..+.+.|.+++.+.+ .++.+++|++
T Consensus        59 ~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~  137 (405)
T PRK05714         59 QRILERLGAWD-GIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQ  137 (405)
T ss_pred             HHHHHHCChhh-hhhHhhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEE
Confidence            33344455564 33322334555555554433 345555433333446789999999999999998777 6788999999


Q ss_pred             EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545        470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY  536 (1428)
Q Consensus       470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  536 (1428)
                      ++.+  .  |++.+|.+++|++||+|||.+|..   .      ..+.+.++...+....++.....  ..+.    +.+ 
T Consensus       138 i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~g-  210 (405)
T PRK05714        138 MRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAW--QRFT----DDG-  210 (405)
T ss_pred             EEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEE--EEcC----CCC-
Confidence            8643  2  667788899999999999999861   1      12344555555544444432211  1122    122 


Q ss_pred             eEEEEeeCCCC----ceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhhccC
Q psy10545        537 HFIYTLPLTPN----SLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIKFKK  607 (1428)
Q Consensus       537 ~f~~~lPl~~~----~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~~~r  607 (1428)
                       .++++|++++    .+.+.+......    ...+.+.+.+.+.+.+   +..+++++.. ....+|+..........+|
T Consensus       211 -~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r  286 (405)
T PRK05714        211 -PLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAF---EGRLGEVLSADPRLCVPLRQRHAKRYVEPG  286 (405)
T ss_pred             -CeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH---HHHhCCceecCCccEEecceeehhhhccCC
Confidence             2566787542    222222211110    1123445555554443   4444544432 2457888887776667799


Q ss_pred             cccccccccccccCCCCChHH----HHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        608 TICVGLRANLLHATTGYSLPI----AIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~~----a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      ++|+|||||.+||++|||++.    |..|++.|.++...+.+++....++.|++ +.....+.....+.+.++|.+...+
T Consensus       287 v~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~  366 (405)
T PRK05714        287 LALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLP  366 (405)
T ss_pred             EEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            999999999999999999764    55555555443333434444445555555 4455555566777788888876653

>PLN02976 amine oxidase

Probab=99.90  E-value=1.6e-22  Score=256.12  Aligned_cols=428  Identities=16%  Similarity=0.127  Sum_probs=234.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC----------chHHHHHHHH
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD----------PNSIKLLFDL  779 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~----------~~~~~~l~~~  779 (1428)
                      .++|+|||||++|+++|++|++.|++|+|||+++.+||++++... .|+.+|.|++++++          ++++..++++
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~q  772 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQ  772 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHh
Confidence            478999999999999999999999999999999999999999875 58899999999874          2445557888


Q ss_pred             hcccccccceEEecCCce-EEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH
Q psy10545        780 SKNRMENYVNLLPIKPFY-RLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN  858 (1428)
Q Consensus       780 lG~~l~~~l~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  858 (1428)
                      +|+.+..      ..... .+...+|..++  .+   ....+.       ..+..+++.........   -...+..++.
T Consensus       773 lGl~l~~------~~~~~~~yd~~~G~~V~--~e---~~~~v~-------~~fn~lld~~~~~~~~~---g~~a~d~SLg  831 (1713)
T PLN02976        773 LGLELTV------LNSDCPLYDVVTGEKVP--AD---LDEALE-------AEYNSLLDDMVLLVAQK---GEHAMKMSLE  831 (1713)
T ss_pred             cCCcccc------ccCCCceeEccCCcCCC--HH---HHHHHH-------HHHHHHHHHHHHHHhhc---ccCccCCCHH
Confidence            8865321      11111 12223443332  11   111111       11112222211110000   0000111122


Q ss_pred             HHHHhhH--H--------------------HHhh----cccCCHHHHHHhhcCCHHHHHHHHhhcc----cccCCCCchh
Q psy10545        859 DMLFILP--K--------------------LIKI----KAWKSVYSIVSQFIKNDYLKQAFSFNSL----FIGGNPFSTS  908 (1428)
Q Consensus       859 ~~~~~~~--~--------------------~~~~----~~~~s~~~~l~~~~~~~~l~~~l~~~~~----~~g~~p~~~s  908 (1428)
                      +++....  .                    +...    .............+.++..+.++.....    .++.++.+.+
T Consensus       832 d~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVS  911 (1713)
T PLN02976        832 DGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVS  911 (1713)
T ss_pred             HHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhh
Confidence            2111000  0                    0000    0000000001111112222222221111    1134455555


Q ss_pred             HHHHHH--HHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC---------CeEEEEEecCCcEEEc
Q psy10545        909 SIYTLI--HALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN---------NKVNKVHLKNGQIFDA  977 (1428)
Q Consensus       909 ~~~~~~--~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---------~~v~~V~~~~G~~i~a  977 (1428)
                      ..+...  .+....+..+.++||++.|+++|++.+     .|++|++|++|.+.+         +..+.|++.+|+++.|
T Consensus       912 l~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftA  986 (1713)
T PLN02976        912 LPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLG  986 (1713)
T ss_pred             hhhhhcccccccCCCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEe
Confidence            432110  011122235678999999999998854     599999999999842         2236788889999999


Q ss_pred             CEEEEcCCHHHHHHH-hcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCC
Q psy10545        978 DIIVSNADIINTYRN-LLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRD 1056 (1428)
Q Consensus       978 d~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1428)
                      |+||+|+|+..+... +.-.|++|.++.++|+++.++ .+.++++.|+++|-+..  .-+++..+..          .+.
T Consensus       987 DaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG-~lnKV~LeFdrpFW~~d--~d~FG~s~ed----------tdl 1053 (1713)
T PLN02976        987 DAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFG-VLNKVVLEFPEVFWDDS--VDYFGATAEE----------TDL 1053 (1713)
T ss_pred             ceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccc-cceEEEEEeCCccccCC--CCcccccccc----------CCC
Confidence            999999988877632 334578999999999999998 68899999999842111  1112111100          001


Q ss_pred             CceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcH-HHHHHHHHHHHHHHHhccCCC-----ccCceEEEEecC
Q psy10545       1057 NLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWS-EESIKLKNIVFMYLEQYCIPN-----LRKKLITQRIFT 1130 (1428)
Q Consensus      1057 ~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~-----l~~~i~~~~~~t 1130 (1428)
                      ....+..++     ...+.|..++..++..+..    ..+. .+.+++++.+++.|.+ +|++     ....++..|...
T Consensus      1054 rG~~~~~wn-----lr~psG~pVLVafv~G~aA----reiEsLSDEE~Ve~ALe~LrK-lFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976       1054 RGQCFMFWN-----VKKTVGAPVLIALVVGKAA----IDGQSMSSSDHVNHALMVLRK-LFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred             CceEEEecc-----CCCCCCCCEEEEEeccHhH----HHHhhCCHHHHHHHHHHHHHH-HcCcccccCcceeEEecCCCC
Confidence            111222221     1223455666666644321    1222 2457788999999998 7763     122223333333


Q ss_pred             cccHHHHhCCCCCcccccc-cccccccccCCCCCCCCCCc-eEEecCCccCC--CCccccccccccccccccc
Q psy10545       1131 PNDFKDVLGSYLGSAFSFA-PLLTQSAWFRPHNRDKNLTN-LYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1131 p~~~~~~~~~~~G~~~g~~-~~~~q~~~~rp~~~t~~i~~-Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      |..        .|+ |.+. ++.  ....+.....| +.| |||||++|.+.  ++|+||+.||..+|..|..
T Consensus      1124 PyS--------rGS-YSy~~PGs--~~~d~d~LAeP-VggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976       1124 PFS--------YGA-YSYVAIGA--SGEDYDILGRP-VENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred             CCc--------Ccc-ccCCCCCC--CchHHHHHhCC-CCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHH
Confidence            433        233 2221 111  11111222334 666 99999998653  3699999999999988753

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.90  E-value=3.1e-23  Score=256.63  Aligned_cols=419  Identities=18%  Similarity=0.221  Sum_probs=215.8

Q ss_pred             cchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC--CeEEcccccccCC-chHHHHHHHHhcccccccceEEecCCce
Q psy10545        721 IGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--GFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNLLPIKPFY  797 (1428)
Q Consensus       721 iaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~--G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~~~~~~~  797 (1428)
                      +|||+||++|+++|++|+|||+++++|||++|.+.+  |+.+|.|++++.. ......++.++|....  ..........
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~   78 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELS--LETFPFPQIP   78 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTT--EEEEEESSEE
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhccc--ccccccccce
Confidence            689999999999999999999999999999999998  9999999999974 3446788888885322  2222222222


Q ss_pred             EEEeCCC--cEEEecCCHHHHHHHH------HhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHh
Q psy10545        798 RLYWGKE--KFLNYEDNIKDLEKQI------AKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIK  869 (1428)
Q Consensus       798 ~~~~~~g--~~~~~~~~~~~~~~~l------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  869 (1428)
                      ......+  ................      .... ...................                  ..+....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  139 (450)
T PF01593_consen   79 FVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFF-RLLERLNKLRQMLDPFFNK------------------AEPEFLE  139 (450)
T ss_dssp             EEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred             eeeccccccccccccccccccccchhhhhhccccc-cccccccchhccchhhhhh------------------hhhhhhh
Confidence            2222211  1111111111111000      0000 0000000000000000000                  0000000


Q ss_pred             hcccCCHHHHHHhhcCCHHHH-----HHHHhhcccccCCCCchhHHHHHHH-------H-hccccceeeecCchHHHHHH
Q psy10545        870 IKAWKSVYSIVSQFIKNDYLK-----QAFSFNSLFIGGNPFSTSSIYTLIH-------A-LEYEWGIWFPKGGVGALIKA  936 (1428)
Q Consensus       870 ~~~~~s~~~~l~~~~~~~~l~-----~~l~~~~~~~g~~p~~~s~~~~~~~-------~-~~~~~g~~~~~gG~~~l~~~  936 (1428)
                      . ...+..+++......+...     ......... ...............       . .....+.....|+...+...
T Consensus       140 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  217 (450)
T PF01593_consen  140 D-DLESFLEFLDSQSFSEIFRESLFRPFFFGAFGF-LPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALAL  217 (450)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHH
T ss_pred             h-hhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhcc-ccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHH
Confidence            0 0111222221111111111     111111111 111111111111111       1 11112223344555444443


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
                      +   ++..|++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+.. +.-.+.+|....++++++.+. +.
T Consensus       218 ~---~~~~g~~i~l~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~-i~~~p~l~~~~~~a~~~~~~~-~~  291 (450)
T PF01593_consen  218 A---AEELGGEIRLNTPVTRIEREDGG-VTVTTEDGETIEADAVISAVPPSVLKN-ILLLPPLPEDKRRAIENLPYS-SV  291 (450)
T ss_dssp             H---HHHHGGGEESSEEEEEEEEESSE-EEEEETTSSEEEESEEEE-S-HHHHHT-SEEESTSHHHHHHHHHTEEEE-EE
T ss_pred             H---HhhcCceeecCCcceeccccccc-cccccccceEEecceeeecCchhhhhh-hhhcccccccccccccccccC-cc
Confidence            3   44457899999999999999988 568888999999999999998887765 223345666677888888888 57


Q ss_pred             EEEEEeecCCcCCCc--ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCC
Q psy10545       1017 FVIYFGLSEQYTHLA--HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSI 1094 (1428)
Q Consensus      1017 ~~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~ 1094 (1428)
                      .+|++.++.++....  ...+...++               ..+..++..++..++.   ++..++..++..+...   .
T Consensus       292 ~~v~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~---~  350 (450)
T PF01593_consen  292 SKVFLGFDRPFWPPDIDFFGILYSDG---------------FSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAP---E  350 (450)
T ss_dssp             EEEEEEESSGGGGSTTTESEEEEESS---------------TSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHH---H
T ss_pred             eeEEEeeecccccccccccceecccC---------------ccccccccccccCccc---ccCCcceeeeeccccc---h
Confidence            799999999954321  112222111               1234455555543332   3455566655443210   0


Q ss_pred             CcHHHHHHHHHHHHHHHHhccCCC--ccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCC-CceE
Q psy10545       1095 NWSEESIKLKNIVFMYLEQYCIPN--LRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNL-TNLY 1171 (1428)
Q Consensus      1095 ~~~~~~ee~~~~vl~~L~~~~~P~--l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i-~~Ly 1171 (1428)
                      ....+++++.+.++++|++ .+|.  ..+......    ..|.+. ..+.|+ ++....... ...++..+.| + +|||
T Consensus       351 ~~~~~~e~~~~~~~~~L~~-~~~~~~~~~~~~~~~----~~w~~~-~~~~~~-~~~~~~~~~-~~~~~~~~~~-~~~~l~  421 (450)
T PF01593_consen  351 WDDLSDEEILERVLDDLRK-ILPGASIPDPIDITV----TRWSRD-PYPRGS-YSYFPPGQS-SQFRPALRTP-IDPGLY  421 (450)
T ss_dssp             HTTSCHHHHHHHHHHHHHH-HHTTGGGGEESEEEE----EECTTS-TTTSSS-CECHCTTHH-HHHHHHHHSC-BTTTEE
T ss_pred             hcccchhhhHHHHHHHhhh-ccccccccccccccc----cccccc-cccccc-ccccccccc-ccccccccCC-cceEEE
Confidence            1123467889999999998 7774  221111111    111111 111222 221111111 1234555565 6 6999


Q ss_pred             EecCCccCC--CCcccccccccccccccc
Q psy10545       1172 FVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1172 ~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |||||++++  +|++||+.||+.+|+.|.
T Consensus       422 ~aG~~~~~~~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  422 FAGDWTSPGYPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             E-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             EeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence            999999987  699999999999998763

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06996 hypothetical protein; Provisional

Probab=99.90  E-value=1e-22  Score=246.82  Aligned_cols=327  Identities=15%  Similarity=0.103  Sum_probs=210.2

Q ss_pred             CChHHHHHHHhcCCchHHHHHHHHhhcC----CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCc
Q psy10545        307 LSFFDKIRIFSGAGIGGIALAIRLQTAG----ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKL  382 (1428)
Q Consensus       307 ~~~~~~~~ii~g~~~~~~~~a~~La~~G----~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~  382 (1428)
                      |...++|++|+|+||+|+++|++|+++|    ++|+|+|+.+.+.                              ...+.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~------------------------------~~~~~   56 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA------------------------------SANDP   56 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc------------------------------CCCCc
Confidence            3345578999999999999999999987    5799999976430                              11245


Q ss_pred             eEEEeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-e
Q psy10545        383 NVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-F  460 (1428)
Q Consensus       383 rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~  460 (1428)
                      |..++...+...+..++.|+.     ...++..+.+++... ..+.+...+...+..+++|+|..|++.|.+++.+.+ .
T Consensus        57 r~~~l~~~~~~~L~~lg~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~  131 (398)
T PRK06996         57 RAIALSHGSRVLLETLGAWPA-----DATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVR  131 (398)
T ss_pred             eEEEecHHHHHHHHhCCCchh-----cCCcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCE
Confidence            777777777776666777763     335566666554322 344444433444556899999999999999998877 6


Q ss_pred             EEecceEEEEeCC--e--EEEcCC---cEEEeeEEEecCCCC-CCC---------CCcceEEEEEEEEEecCCcCCCCce
Q psy10545        461 LFNNKTVEIITPT--S--IRINNK---KIINANCIIDGRGLK-NSQ---------FDGIYQIFLGQQWNLSSPHGLDIPI  523 (1428)
Q Consensus       461 ~~~~~~v~~i~~~--~--v~l~~g---~~~~a~lvI~AdG~~-S~~---------~~~~~q~~~g~~~~~~~~~~~~~~~  523 (1428)
                      +..++++++++.+  .  +++.++   ++++|++||+|||.+ |+.         ...|.+.++...+.++.++..... 
T Consensus       132 ~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  210 (398)
T PRK06996        132 WLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAW-  210 (398)
T ss_pred             EEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEE-
Confidence            7788999888643  2  455544   589999999999974 331         113566777777766666543221 


Q ss_pred             EEecccCCCCCcceEEEEeeCCCCc---eEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeeee-eeeecc
Q psy10545        524 IMDATVNQKNDEYHFIYTLPLTPNS---LMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIEREE-IGSIPI  595 (1428)
Q Consensus       524 ~~~~~~~~~~~g~~f~~~lPl~~~~---~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~Pl  595 (1428)
                       ..+.    ..|+  +.++|++++.   ..+........    ...+.+.+.+.+.+.+   +..++.+.... ...+|+
T Consensus       211 -~~~~----~~G~--~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l  280 (398)
T PRK06996        211 -ERFT----HEGP--LALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAF---GTRMGRFTRIAGRHAFPL  280 (398)
T ss_pred             -EEec----CCCC--eEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHh---ccccCceEEecceEEEee
Confidence             1221    1333  5567887543   22221111110    1224455666665554   55555553322 447898


Q ss_pred             cCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHH
Q psy10545        596 ALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNR  674 (1428)
Q Consensus       596 ~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~  674 (1428)
                      ....+.....+||+|+|||||.+||++|||++.+++.|..|+.++.....  ....++.|++ +...........+.+.+
T Consensus       281 ~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~--~~~~L~~Y~~~R~~~~~~~~~~s~~l~~  358 (398)
T PRK06996        281 GLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGA--TPLALATFAARRALDRRVTIGATDLLPR  358 (398)
T ss_pred             ecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777766679999999999999999999988777777777766643211  2223444433 33333444456677888


Q ss_pred             Hhhhccc
Q psy10545        675 LFFLSNS  681 (1428)
Q Consensus       675 ~f~~~~~  681 (1428)
                      +|.....
T Consensus       359 ~~~~~~~  365 (398)
T PRK06996        359 LFTVDSR  365 (398)
T ss_pred             HHcCCch
Confidence            8776654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.89  E-value=1.4e-21  Score=237.11  Aligned_cols=322  Identities=17%  Similarity=0.168  Sum_probs=190.8

Q ss_pred             CChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEE
Q psy10545        307 LSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLL  386 (1428)
Q Consensus       307 ~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~  386 (1428)
                      ++-+++|++|+|+||+|.++|..||++|++|+|+|+++.            ..++||+|+....+. .            
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~------------~~k~cgg~i~~~~l~-~------------   89 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD------------NAKPCGGAIPLCMVG-E------------   89 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC------------CCCCccccccHhHHh-h------------
Confidence            344568999999999999999999999999999998753            235688887643221 0            


Q ss_pred             eecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecc
Q psy10545        387 LELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNK  465 (1428)
Q Consensus       387 l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~  465 (1428)
                                 +++++ .+   ....+..+....-....+.++.. .......++++|..|++.|.+++.+.| .++. .
T Consensus        90 -----------lgl~~-~~---~~~~i~~~~~~~p~~~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~-~  152 (450)
T PLN00093         90 -----------FDLPL-DI---IDRKVTKMKMISPSNVAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNGATLIN-G  152 (450)
T ss_pred             -----------hcCcH-HH---HHHHhhhheEecCCceEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEe-c
Confidence                       11111 00   00111111111111223333321 111122346999999999999998888 5544 4


Q ss_pred             eEEEEeC-----Ce--EEEcC-------C--cEEEeeEEEecCCCCCCC---CC-cceEEEEEEEEEecCCcCC----CC
Q psy10545        466 TVEIITP-----TS--IRINN-------K--KIINANCIIDGRGLKNSQ---FD-GIYQIFLGQQWNLSSPHGL----DI  521 (1428)
Q Consensus       466 ~v~~i~~-----~~--v~l~~-------g--~~~~a~lvI~AdG~~S~~---~~-~~~q~~~g~~~~~~~~~~~----~~  521 (1428)
                      +++++..     +.  |++.+       |  .+++|++||+|||.+|..   .. ...+..++++..+..|...    ..
T Consensus       153 ~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (450)
T PLN00093        153 LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYED  232 (450)
T ss_pred             eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCC
Confidence            5766641     11  44432       3  479999999999999761   11 1234556666555444211    11


Q ss_pred             ceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchh
Q psy10545        522 PIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEK  601 (1428)
Q Consensus       522 ~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~  601 (1428)
                      ...+.++....++  .|.|++|+++ .+.|+........  +...+.+.+.+.+.. ....+++.+.+.+.+|+...  .
T Consensus       233 ~~~~~~g~~~~p~--~Y~WifP~g~-~~~VG~g~~~~~~--~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~ip~~~~--~  304 (450)
T PLN00093        233 LAEMYVGDDVSPD--FYGWVFPKCD-HVAVGTGTVVNKP--AIKKYQRATRNRAKD-KIAGGKIIRVEAHPIPEHPR--P  304 (450)
T ss_pred             eEEEEeCCCCCCC--ceEEEEECCC-cEEEEEEEccCCC--ChHHHHHHHHHHhhh-hcCCCeEEEEEEEEcccccc--c
Confidence            2223333222322  2579999984 5677765443221  334444444433311 11224566666778888433  2


Q ss_pred             hhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc----CC-CCChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545        602 IIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT----TN-QINSTVLFKLVKKFIINHQKKQRFFCMLNRLF  676 (1428)
Q Consensus       602 ~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f  676 (1428)
                      +...+|++|||||||+++|++|+||+.|+..+..+++++.+    +. +.+...+..|.++|+.+..+.......+.++|
T Consensus       305 ~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~  384 (450)
T PLN00093        305 RRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVF  384 (450)
T ss_pred             ceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33568999999999999999999999887777666665553    21 22334444444446666666677777788877


Q ss_pred             hh
Q psy10545        677 FL  678 (1428)
Q Consensus       677 ~~  678 (1428)
                      ..
T Consensus       385 ~~  386 (450)
T PLN00093        385 YR  386 (450)
T ss_pred             cC
Confidence            66

>PRK06185 hypothetical protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=247.43  Aligned_cols=326  Identities=10%  Similarity=0.058  Sum_probs=193.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|++|+|+|++|+++|+.|+++|++|+|||+++..           ....+|..                     +.+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~-----------~~~~r~~~---------------------l~~   52 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF-----------LRDFRGDT---------------------VHP   52 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-----------CccccCce---------------------eCh
Confidence            4578999999999999999999999999999988643           00112223                     333


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCc--cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS--YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK  465 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~  465 (1428)
                      .+...+..++.|+ .+......++..+.++....  ..+.++..... ...++++++..+.+.|.+++.+. | .++.++
T Consensus        53 ~s~~~L~~lG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~  130 (407)
T PRK06185         53 STLELMDELGLLE-RFLELPHQKVRTLRFEIGGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGA  130 (407)
T ss_pred             hHHHHHHHcCChh-HHhhcccceeeeEEEEECCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCC
Confidence            3333233334443 23222233444444432221  12233221111 23567899999999999998764 5 678899


Q ss_pred             eEEEEeCC--e---EEE--cCCc-EEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecc
Q psy10545        466 TVEIITPT--S---IRI--NNKK-IINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDAT  528 (1428)
Q Consensus       466 ~v~~i~~~--~---v~l--~~g~-~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~  528 (1428)
                      +|+++..+  .   |++  .+|. +++|++||+|||.+|.-   .      ..+.+..+..  .++.++......+..+.
T Consensus       131 ~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  208 (407)
T PRK06185        131 EVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWF--RLPREPDDPESLMGRFG  208 (407)
T ss_pred             EEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEE--ecCCCCCCCcccceEec
Confidence            99988632  2   333  3564 79999999999999751   1      1233333322  33333222111111111


Q ss_pred             cCCCCCcceEEEEeeCCCCceEEEeEEeccCC----CCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhh
Q psy10545        529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKP----FLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKII  603 (1428)
Q Consensus       529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~  603 (1428)
                            .-+.++++|++ +...+..+......    ..+.+.+.+.+.+........++.+.. .....+|+.....+..
T Consensus       209 ------~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~  281 (407)
T PRK06185        209 ------PGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRW  281 (407)
T ss_pred             ------CCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccc
Confidence                  11346788987 55555444322211    122344555544432111223444432 3357889888877767


Q ss_pred             hccCcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhh
Q psy10545        604 KFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFL  678 (1428)
Q Consensus       604 ~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~  678 (1428)
                      +.+|++++|||||.+||++|||++    |+..+++.|.++...+ +.+. .+++.|++ ++.+......+++.+.++|++
T Consensus       282 ~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~~~-~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  359 (407)
T PRK06185        282 HRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RVSD-RDLAAVQRRREFPTRVTQALQRRIQRRLLA  359 (407)
T ss_pred             cCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-CccH-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Confidence            779999999999999999999977    5556666666554433 3444 34444443 566667777788999999988


Q ss_pred             cc
Q psy10545        679 SN  680 (1428)
Q Consensus       679 ~~  680 (1428)
                      +.
T Consensus       360 ~~  361 (407)
T PRK06185        360 PA  361 (407)
T ss_pred             cc
Confidence            77

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.89  E-value=7e-22  Score=238.49  Aligned_cols=283  Identities=17%  Similarity=0.193  Sum_probs=186.8

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccC-cchhHHHHHHHHHhcCCCceEEEee
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTN-QGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g-~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      +++|++|+|+||+|.++|..||++|++|+|+|+++.+           |.|+|| +++.+..+.    ...|+...    
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~-----------G~k~~~~~~~~~~~l~----~l~~~~~~----   62 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-----------GAKPCCGGGLSPRALE----ELIPDFDE----   62 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC-----------CCCccccceechhhHH----HhCCCcch----
Confidence            4578999999999999999999999999999999999           999999 555554332    11222000    


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccc---ccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF---SGYYSICSKHLNSYLIRALGINN-FLFNN  464 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~r~~l~~~L~~~~~~~~-~~~~~  464 (1428)
                                                . +........+.++.......   ..+|+|+|..|++.|.++++++| .++.+
T Consensus        63 --------------------------~-i~~~v~~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~  115 (396)
T COG0644          63 --------------------------E-IERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPG  115 (396)
T ss_pred             --------------------------h-hheeeeeeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEec
Confidence                                      0 01111122333332222121   45999999999999999999999 78889


Q ss_pred             ceEEEEeCCe----E-EEcCCcEEEeeEEEecCCCCCCC---CCcc---eEE-EEEEEEEecCCcCCCCceEEecccCCC
Q psy10545        465 KTVEIITPTS----I-RINNKKIINANCIIDGRGLKNSQ---FDGI---YQI-FLGQQWNLSSPHGLDIPIIMDATVNQK  532 (1428)
Q Consensus       465 ~~v~~i~~~~----v-~l~~g~~~~a~lvI~AdG~~S~~---~~~~---~q~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  532 (1428)
                      +++..+..++    + +..++.+++|++||+|||.+|.-   ....   .+. .++..-....|.......++.+.  ..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~  193 (396)
T COG0644         116 TRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGP--LD  193 (396)
T ss_pred             eEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecC--Cc
Confidence            9998886432    2 33334689999999999999761   1111   122 22322223445222222222221  11


Q ss_pred             CCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCC---cc-ceeeeeeeeeecccCCchhhhhccCc
Q psy10545        533 NDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRW---KL-KNIEREEIGSIPIALKNEKIIKFKKT  608 (1428)
Q Consensus       533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~~~~~Pl~~~~~~~~~~~rv  608 (1428)
                      ....+|.|++|+.++.++|+.+........+. .. +.+++|......   .. ++++....+.+|+........+.+++
T Consensus       194 ~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~-~~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~  271 (396)
T COG0644         194 VGPGGYGWIFPLGDGHANVGIGVLLDDPSLSP-FL-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGV  271 (396)
T ss_pred             cCCCceEEEEECCCceEEEEEEEecCCcCCCc-hH-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCE
Confidence            12356789999999999999887766522121 22 444444422111   11 46677778899998886542356899


Q ss_pred             ccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        609 ICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       609 ~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      ++|||||++++|++|.|+..|+..+..+++++.+
T Consensus       272 ~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~  305 (396)
T COG0644         272 LLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE  305 (396)
T ss_pred             EEEeccccCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888888887775

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.86  E-value=2.4e-20  Score=225.31  Aligned_cols=306  Identities=17%  Similarity=0.169  Sum_probs=171.7

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|+||+|+||+|+++|+.||++|++|+|+|++. +           ..+.||+++....+.    .              
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~-----------~~~~cg~~i~~~~l~----~--------------   50 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-S-----------NIKPCGGAIPPCLIE----E--------------   50 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-C-----------CcCcCcCCcCHhhhh----h--------------
Confidence            368899999999999999999999999999872 2           235677777653211    0              


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc---ccc--cccc-eeeechHHHHHHHHHhccCC-eEEec
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN---RKI--FSGY-YSICSKHLNSYLIRALGINN-FLFNN  464 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~i~r~~l~~~L~~~~~~~~-~~~~~  464 (1428)
                            +++++            ++....|.+..+..+...   ...  ...+ .+++|..|++.|.+++.+.| .++. 
T Consensus        51 ------l~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-  111 (388)
T TIGR02023        51 ------FDIPD------------SLIDRRVTQMRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIH-  111 (388)
T ss_pred             ------cCCch------------HHHhhhcceeEEEcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-
Confidence                  00000            001111222222222210   001  1122 36999999999999998888 4544 


Q ss_pred             ceEEEEeCCe----EEEcC------C--cEEEeeEEEecCCCCCCC---C--CcceEEEEEEEEEecCCc----CCCCce
Q psy10545        465 KTVEIITPTS----IRINN------K--KIINANCIIDGRGLKNSQ---F--DGIYQIFLGQQWNLSSPH----GLDIPI  523 (1428)
Q Consensus       465 ~~v~~i~~~~----v~l~~------g--~~~~a~lvI~AdG~~S~~---~--~~~~q~~~g~~~~~~~~~----~~~~~~  523 (1428)
                      .+|+++..++    |++.+      |  .+++|++||+|||.+|..   .  .......++.+..+..+.    ......
T Consensus       112 ~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  191 (388)
T TIGR02023       112 GLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELA  191 (388)
T ss_pred             eEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeE
Confidence            4687775322    44442      2  479999999999999762   1  111112233333332221    111111


Q ss_pred             EEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhh
Q psy10545        524 IMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKII  603 (1428)
Q Consensus       524 ~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~  603 (1428)
                      .+.+.....++  .|.|++|+++ .++++......  ..+...+.+.+.+.+   +...+++.+.+.+.+|+...  ...
T Consensus       192 ~~~~~~~~~p~--~y~wv~P~~~-~~~vg~~~~~~--~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ip~~~~--~~~  261 (388)
T TIGR02023       192 DVYYGGEVSPD--FYGWVFPKGD-HIAVGTGTGTH--GFDAKQLQANLRRRA---GLDGGQTIRREAAPIPMKPR--PRW  261 (388)
T ss_pred             EEEECCCcCCC--ceEEEeeCCC-eeEEeEEECCC--CCCHHHHHHHHHHhh---CCCCceEeeeeeEecccccc--ccc
Confidence            12222212222  4789999974 56666543321  223444544444443   44445555666678888433  223


Q ss_pred             hccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545        604 KFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQKKQRFFCMLNRLF  676 (1428)
Q Consensus       604 ~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f  676 (1428)
                      ..+++++||||||.++|++|+|++.|+..+..+++++.+.-.- ....+..|.++|+....+.....+.+..++
T Consensus       262 ~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~  335 (388)
T TIGR02023       262 DFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVLRVLQMVY  335 (388)
T ss_pred             cCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5589999999999999999999887777666666555431111 122333333334444444444444444443

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.86  E-value=3.3e-20  Score=223.64  Aligned_cols=316  Identities=17%  Similarity=0.181  Sum_probs=181.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+||+|.++|..||++|++|+|||+++..            .+.||+++....+.    .               
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~------------~~~cg~~i~~~~l~----~---------------   50 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDN------------AKPCGGAIPLCMVD----E---------------   50 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC------------CCCccccccHhhHh----h---------------
Confidence            5789999999999999999999999999987533            25677777543221    0               


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                           ++++. ++.   ...++.+....-....+.+.... ......++++|..|++.|.+++.++| .++.+ +++++.
T Consensus        51 -----~g~~~-~~~---~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~  119 (398)
T TIGR02028        51 -----FALPR-DII---DRRVTKMKMISPSNIAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLS  119 (398)
T ss_pred             -----ccCch-hHH---HhhhceeEEecCCceEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEE
Confidence                 00010 000   00111111111011222222100 01112246999999999999999888 56555 466663


Q ss_pred             C----C---eEEE--cC-----C--cEEEeeEEEecCCCCCCC---CC-cceEEEEEEEEEecCCcCC----CCceEEec
Q psy10545        472 P----T---SIRI--NN-----K--KIINANCIIDGRGLKNSQ---FD-GIYQIFLGQQWNLSSPHGL----DIPIIMDA  527 (1428)
Q Consensus       472 ~----~---~v~l--~~-----g--~~~~a~lvI~AdG~~S~~---~~-~~~q~~~g~~~~~~~~~~~----~~~~~~~~  527 (1428)
                      .    +   .|++  .+     |  .+++|++||+|||.+|..   .. ...+..+.+...++.|..+    .....+.+
T Consensus       120 ~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (398)
T TIGR02028       120 LPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYV  199 (398)
T ss_pred             eccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEe
Confidence            1    1   1433  12     3  479999999999999762   11 1123344444334333221    12222333


Q ss_pred             ccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccC
Q psy10545        528 TVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKK  607 (1428)
Q Consensus       528 ~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~r  607 (1428)
                      +....+++  |.|++|+++ .++|+.......  ...+.+.+.+...... ....++++..+.+.+|+...  ...+.++
T Consensus       200 g~~~~p~g--Y~WifP~~~-~~~VG~g~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ip~~~~--~~~~~~~  271 (398)
T TIGR02028       200 GDDVSPDF--YGWVFPKCD-HVAVGTGTVAAK--PEIKRLQSGIRARAAG-KVAGGRIIRVEAHPIPEHPR--PRRVVGR  271 (398)
T ss_pred             CCCCCCCc--eEEEEECCC-eEEEEEEeCCCC--ccHHHHHHhhhhhhhh-ccCCCcEEEEEEEecccccc--ccEECCC
Confidence            32223223  689999984 566776543221  1234444444432211 11224455566678888543  2235689


Q ss_pred             cccccccccccccCCCCChHHHHHHHHHHHhhccc----CCC-CChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy10545        608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT----TNQ-INSTVLFKLVKKFIINHQKKQRFFCMLNRLFFL  678 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~  678 (1428)
                      +++||||||++||++|+||+.|+..+..+++++.+    +.. .+...+..|.++|..+..+.......+.++|..
T Consensus       272 ~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR02028       272 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR  347 (398)
T ss_pred             EEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999888877766666543    222 233334444444666666667777778777776

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.86  E-value=9.3e-21  Score=231.18  Aligned_cols=327  Identities=14%  Similarity=0.106  Sum_probs=186.3

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcC--CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G--~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +|++|+|+||+|+++|++|+++|  ++|+|+|+++....         ....+|.++.+....                 
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~---------~~~~~~~~l~~~~~~-----------------   55 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW---------SRDPRASAIAAAARR-----------------   55 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC---------CCCcceEEecHHHHH-----------------
Confidence            36789999999999999999996  99999999875310         112345555554321                 


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCc------cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS------YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLF  462 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~  462 (1428)
                          .++.|++|+ .+. ....++..+..++..+      ..+.+..........+++|+|..|.+.|.+++.+.| .++
T Consensus        56 ----~l~~lGl~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~  129 (403)
T PRK07333         56 ----MLEALGVWD-EIA-PEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLR  129 (403)
T ss_pred             ----HHHHCCChh-hhh-hhcCcccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEE
Confidence                122233333 121 1222333333322111      112332211112234578999999999999998877 678


Q ss_pred             ecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEeccc
Q psy10545        463 NNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATV  529 (1428)
Q Consensus       463 ~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~  529 (1428)
                      .+++|++++.+.    |++.+|.+++||+||+|||.+|..   .      ..+.+.++...+....++...  ....+. 
T Consensus       130 ~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  206 (403)
T PRK07333        130 EATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGR--AEEHFL-  206 (403)
T ss_pred             cCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCE--EEEEeC-
Confidence            899999986432    667788899999999999999761   1      123445554454444333221  111111 


Q ss_pred             CCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh
Q psy10545        530 NQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK  604 (1428)
Q Consensus       530 ~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~  604 (1428)
                         +.|  ++|++|++++..++........    ...+.+.+.+.+.+.+   +...+.+... ....+|+.........
T Consensus       207 ---~~g--~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (403)
T PRK07333        207 ---PAG--PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRF---GHRLGELKVLGKRRAFPLGLTLARSFV  278 (403)
T ss_pred             ---CCC--ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHh---hhhcCceEeccCccEeechhhhhhhcc
Confidence               122  3678899888766533211100    0112233444444433   3333443322 2346888766565556


Q ss_pred             ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHHHHHH-HHhHHHHHHHHHHHhhhc
Q psy10545        605 FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKKFIIN-HQKKQRFFCMLNRLFFLS  679 (1428)
Q Consensus       605 ~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~f~~~  679 (1428)
                      .+|++|||||||.+||++|||++.+++.|..|++++.    .+.+.+....++.|++.+.. ..+.....+.+.+++...
T Consensus       279 ~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~  358 (403)
T PRK07333        279 APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND  358 (403)
T ss_pred             CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence            7999999999999999999997755555555444443    22233345455555443222 222233445566666655


Q ss_pred             cc
Q psy10545        680 NS  681 (1428)
Q Consensus       680 ~~  681 (1428)
                      ..
T Consensus       359 ~~  360 (403)
T PRK07333        359 ST  360 (403)
T ss_pred             ch
Confidence            53

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.86  E-value=9.4e-21  Score=231.98  Aligned_cols=329  Identities=16%  Similarity=0.088  Sum_probs=187.2

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|++|+|+||+|+++|+.|+++|++|+|+|+++.+           ....+|.|+......                 
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-----------~~~~~g~~~~l~~~~-----------------   68 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE-----------AAAAKGQAYALSLLS-----------------   68 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc-----------ccCCCCcEEEechHH-----------------
Confidence            3578999999999999999999999999999998765           112233333222222                 


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecce
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKT  466 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~  466 (1428)
                        ...++.+++|++ +. ....++..+..++... ..+.++.........++++.++.|.+.|.+++.+. + .++.+++
T Consensus        69 --~~~L~~lGl~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~  144 (415)
T PRK07364         69 --ARIFEGIGVWEK-IL-PQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAE  144 (415)
T ss_pred             --HHHHHHCChhhh-hH-hhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCe
Confidence              122233444442 21 1222333333322211 23333322222223456777778999999988765 4 5777899


Q ss_pred             EEEEeCC--e--EEEcC-C--cEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccC
Q psy10545        467 VEIITPT--S--IRINN-K--KIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVN  530 (1428)
Q Consensus       467 v~~i~~~--~--v~l~~-g--~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~  530 (1428)
                      |++++.+  .  |++.+ +  .+++||+||+|||.+|..   .  .    .+++.++.+.+..+.++....  +..+.  
T Consensus       145 v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--  220 (415)
T PRK07364        145 VVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIA--YERFW--  220 (415)
T ss_pred             eEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEE--EEEec--
Confidence            9998643  2  56653 3  369999999999999862   1  1    133455555544443333211  11111  


Q ss_pred             CCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhc
Q psy10545        531 QKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKF  605 (1428)
Q Consensus       531 ~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~  605 (1428)
                        +.+  +++++|++++...+........    ...+.+++.+.+.+.+.   ...+++.. .....+|+..........
T Consensus       221 --~~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (415)
T PRK07364        221 --PSG--PFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG---DQLGKLELLGDRFLFPVQLMQSDRYVQ  293 (415)
T ss_pred             --CCC--CeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh---hhhcCceecCCCceecchhhhhhhhcC
Confidence              122  3567899877755532211100    11233455555555442   22223322 223467876655555566


Q ss_pred             cCcccccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhcc
Q psy10545        606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKKFI-INHQKKQRFFCMLNRLFFLSN  680 (1428)
Q Consensus       606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~  680 (1428)
                      +|++|||||||.+||++|||++.+++.|..|++++.    .+.+++....++.|++.+ ..........+.+.+++....
T Consensus       294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~  373 (415)
T PRK07364        294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQW  373 (415)
T ss_pred             CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            899999999999999999998766655555555543    233444334455554433 222223345555777776655


Q ss_pred             c
Q psy10545        681 S  681 (1428)
Q Consensus       681 ~  681 (1428)
                      .
T Consensus       374 ~  374 (415)
T PRK07364        374 W  374 (415)
T ss_pred             h
Confidence            4

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.86  E-value=1.4e-20  Score=228.40  Aligned_cols=331  Identities=15%  Similarity=0.161  Sum_probs=190.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ..|++|+|+||+|+++|+.|++.|++|+|+|+.+.+..             .+.+              .+.|...+...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------------~~~~--------------~~~r~~~l~~~   57 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP-------------ADDA--------------WDSRVYAISPS   57 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccc-------------cCCC--------------CCCceEeecHH
Confidence            35789999999999999999999999999999875510             0111              01222333333


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-e-EEecceEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-F-LFNNKTVE  468 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~-~~~~~~v~  468 (1428)
                      +...++.+++|+ .+......++..+.........+.+.......+..++.++|..|++.|.+++.+.+ + ++ +.+|+
T Consensus        58 ~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~  135 (388)
T PRK07608         58 SQAFLERLGVWQ-ALDAARLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQ  135 (388)
T ss_pred             HHHHHHHcCchh-hhhhhcCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeE
Confidence            322223334443 22111222333333333333444444333334456788999999999999998766 4 45 88898


Q ss_pred             EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      ++..+  .  |++.+|.+++|++||+|||.+|..   ..      .+.+.++...++.+.++...  .+..+.      .
T Consensus       136 ~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~  207 (388)
T PRK07608        136 GLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGT--AYQWFR------D  207 (388)
T ss_pred             EEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCE--EEEEec------C
Confidence            88632  2  666788889999999999999761   10      12233444444443333221  111111      1


Q ss_pred             ceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCccc
Q psy10545        536 YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTIC  610 (1428)
Q Consensus       536 ~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~l  610 (1428)
                      .++++++|++++.+.+........    ...+.+.+.+.+.+.+..   .++.+.. .....+|+.....+....+|+++
T Consensus       208 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l  284 (388)
T PRK07608        208 DGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG---RLGRLECVTPAAGFPLRLQRVDRLVAPRVAL  284 (388)
T ss_pred             CCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH---hcCCceecCCcceeecchhhhhhhhcCceEE
Confidence            124678899888766543321111    112445666666655432   2233322 12235787766555556699999


Q ss_pred             ccccccccccCCCCChHHHHHHHHHHHhhcccC---CCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        611 VGLRANLLHATTGYSLPIAIQLAENIAKYSITT---NQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       611 vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      ||||||.++|++|||++.+++.|..|+.++...   .+.+...+++.|++ +...........+.+..++.....
T Consensus       285 iGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~  359 (388)
T PRK07608        285 VGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFALPGP  359 (388)
T ss_pred             EeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            999999999999999887766666666665431   12223334444433 222222333344556666665554

>PRK09126 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-20  Score=227.45  Aligned_cols=331  Identities=12%  Similarity=0.099  Sum_probs=185.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCC-CcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVG-YPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~-~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +.|++|+|+||+|+++|++|+++|++|+|+|+.+.+.         .. .+.+|.++.......+..+            
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~---------~~~~~~~g~~i~l~~~~~~~L~------------   61 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA---------LADPAFDGREIALTHASREILQ------------   61 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc---------ccCCCCchhHHHhhHHHHHHHH------------
Confidence            4689999999999999999999999999999987540         01 1234555443333322211            


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhcc-CC-eEEecce
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI-NN-FLFNNKT  466 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~-~~~~~~~  466 (1428)
                             .|++|+ .+......++..+.+.+.. ...+.++.........++.++|..+.+.|.+.+.+ .| .++.+++
T Consensus        62 -------~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~  133 (392)
T PRK09126         62 -------RLGAWD-RIPEDEISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTR  133 (392)
T ss_pred             -------HCCChh-hhccccCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCe
Confidence                   122222 1211111222222222211 12344433222233467889999999999998854 46 6888999


Q ss_pred             EEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCCC
Q psy10545        467 VEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKN  533 (1428)
Q Consensus       467 v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1428)
                      |++++.+  .  |++++|.+++|++||+|||.+|..   ..      .+.+..+...+....++.  ...+..++.    
T Consensus       134 v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----  207 (392)
T PRK09126        134 VTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHH--HTAWEWFGY----  207 (392)
T ss_pred             EEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCC--CEEEEEecC----
Confidence            9988643  2  667788899999999999999761   10      122223322222222211  111111211    


Q ss_pred             CcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCc
Q psy10545        534 DEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKT  608 (1428)
Q Consensus       534 ~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv  608 (1428)
                        -.+++++|+.++..++........    ...+.+.+.+.+.+.+   ......+.. .....+|+.....+....+|+
T Consensus       208 --~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv  282 (392)
T PRK09126        208 --GQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARF---KGRLGAMRLVSSRHAYPLVAVYAHRFVAKRF  282 (392)
T ss_pred             --CCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhccCeEEcCCCcEeechHHHHHHHhhcce
Confidence              124678899887766644322111    1123344544444433   222222322 223567776555555566999


Q ss_pred             ccccccccccccCCCCChHHHHH----HHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        609 ICVGLRANLLHATTGYSLPIAIQ----LAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       609 ~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      +|+|||||.++|++|||++.|+.    +++.|+.....+.+......++.|++ +.....+.....+.+.+++.....
T Consensus       283 ~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~  360 (392)
T PRK09126        283 ALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRP  360 (392)
T ss_pred             EEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            99999999999999999775554    55555443332334444444444544 333333334455556666655443

>KOG1276|consensus

Probab=99.84  E-value=7.3e-20  Score=203.52  Aligned_cols=427  Identities=16%  Similarity=0.123  Sum_probs=257.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCe--EEEEccCCCCCCcceE-EEeCCeEEcccccccCCch----HHHHHHHHhccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGIS--TIILEQRDKPGGRAYV-YKQDGFIFDAGPTVITDPN----SIKLLFDLSKNR  783 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~--V~VlEa~~~~GGr~~s-~~~~G~~~d~G~~~i~~~~----~~~~l~~~lG~~  783 (1428)
                      .++|+|||||++||+||++|++.+-+  |+|+|+.+|+||.++| ...+|+.||.|+..+..-+    ...+++.++|++
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            47899999999999999999999866  5669999999999999 3457999999999997522    467889999953


Q ss_pred             ccccceEEec-CC--ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHH
Q psy10545        784 MENYVNLLPI-KP--FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDM  860 (1428)
Q Consensus       784 l~~~l~~~~~-~~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  860 (1428)
                        +.+...+. .+  ..++.+..|+...+|.+.......  -..|....-+..++           .+.+..        
T Consensus        91 --~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~--~l~p~~k~L~~a~l-----------~e~fr~--------  147 (491)
T KOG1276|consen   91 --DELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKF--SLQPFGKPLLEAFL-----------RELFRK--------  147 (491)
T ss_pred             --ceeeecCCCChhhhheeeccCcccccCCccccccccc--ccCcccchhHHHHH-----------hhhccc--------
Confidence              32222221 12  123444455555555443221000  00011111010010           000000        


Q ss_pred             HHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhH--HHHHHHHhccccc---------------
Q psy10545        861 LFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSS--IYTLIHALEYEWG---------------  922 (1428)
Q Consensus       861 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~--~~~~~~~~~~~~g---------------  922 (1428)
                           ..-.-..++|+++|.+++|.++....+++ ...+.++.+|.+.|+  .|.-+...++.+|               
T Consensus       148 -----~~~~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~  222 (491)
T KOG1276|consen  148 -----KVSDPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKR  222 (491)
T ss_pred             -----cCCCCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Confidence                 00011248999999999999888888887 456777889988876  4444444443332               


Q ss_pred             ------------------eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCCc-EEEcCEEE
Q psy10545        923 ------------------IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNGQ-IFDADIIV  981 (1428)
Q Consensus       923 ------------------~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G~-~i~ad~VV  981 (1428)
                                        .+..+||++.+++++.+.|.+..+.|.++.++..+......-+.+.+  .+++ ....+++.
T Consensus       223 ~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~  302 (491)
T KOG1276|consen  223 TKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDA  302 (491)
T ss_pred             CCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccc
Confidence                              35678999999999999999988999999999888764322244444  4443 34566666


Q ss_pred             EcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCC-c-CCCcceEEEcCCChHHHHHHHhcCCCCCCCce
Q psy10545        982 SNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQ-Y-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLS 1059 (1428)
Q Consensus       982 ~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1428)
                      .+.++..+.. ++...  .+.....+.++.|. ++.+|++.+..+ . -++......++...            -.....
T Consensus       303 ~t~~~~k~a~-ll~~~--~~sls~~L~ei~y~-~V~vVn~~yp~~~~~~pl~GFG~LvPs~~------------~~~~~~  366 (491)
T KOG1276|consen  303 ATLPAVKLAK-LLRGL--QNSLSNALSEIPYV-PVAVVNTYYPKEKIDLPLQGFGLLVPSEP------------KNGFKT  366 (491)
T ss_pred             cccchHHhhh-hcccc--chhhhhhhhcCCCC-ceEEEEEeccCcccccccccceeeccCCC------------CCCCce
Confidence            7887766655 66543  23455778888887 688999999885 1 12333333333210            112345


Q ss_pred             EEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhC
Q psy10545       1060 IYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLG 1139 (1428)
Q Consensus      1060 ~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~ 1139 (1428)
                      +.+.+.|...|.+.|.++.+++.....  ... ...-..+.+|+++.+.++|.+ .+ +++......++.          
T Consensus       367 LG~ifdS~~Fp~~~~s~~vtvm~gg~~--~~n-~~~~~~S~ee~~~~v~~alq~-~L-gi~~~P~~~~v~----------  431 (491)
T KOG1276|consen  367 LGTIFDSMLFPDRSPSPKVTVMMGGGG--STN-TSLAVPSPEELVNAVTSALQK-ML-GISNKPVSVNVH----------  431 (491)
T ss_pred             eEEEeecccCCCCCCCceEEEEecccc--ccc-CcCCCCCHHHHHHHHHHHHHH-Hh-CCCCCcccccce----------
Confidence            666677777777777765444433322  110 111234568999999999998 33 344332222211          


Q ss_pred             CCCCcccccccccccc-cccCCCCCCCCCCceEEecCCccCCCCccccccccccccccc
Q psy10545       1140 SYLGSAFSFAPLLTQS-AWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus      1140 ~~~G~~~g~~~~~~q~-~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i 1197 (1428)
                      .+.-|+.-+.-+.++. ...+-......-.+|+++|.|.. |.++.-|+++|+.+|..+
T Consensus       432 l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~-Gv~vgdcI~sg~~~A~~v  489 (491)
T KOG1276|consen  432 LWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYG-GVSVGDCIESGRKTAVEV  489 (491)
T ss_pred             ehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccC-CCChhHHHHhhHHHHHhh
Confidence            1111222111111110 00011111111357999999987 789999999999988654

>KOG3855|consensus

Probab=99.84  E-value=3.2e-20  Score=205.22  Aligned_cols=344  Identities=13%  Similarity=0.063  Sum_probs=223.3

Q ss_pred             CCChHHHHHHHhcCCchHHHHHHHHhhc----CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCC
Q psy10545        306 KLSFFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPK  381 (1428)
Q Consensus       306 ~~~~~~~~~ii~g~~~~~~~~a~~La~~----G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~  381 (1428)
                      .++...+|++|+|+||+|.+.|.+|...    ..+|.|+|....+....  |+.                     .....
T Consensus        31 ~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~--~~~---------------------~~~f~   87 (481)
T KOG3855|consen   31 STDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD--FKP---------------------SETFS   87 (481)
T ss_pred             cCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc--ccc---------------------Ccccc
Confidence            3444578999999999999999999854    56999999763320000  000                     12345


Q ss_pred             ceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHH-Hh-ccC
Q psy10545        382 LNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIR-AL-GIN  458 (1428)
Q Consensus       382 ~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~-~~~  458 (1428)
                      -|++.+++.+....+..+.|+ .+...+..+++++.+++.-. ..+.|...... ...++++++..++..|+. ++ .+.
T Consensus        88 Nrvss~s~~s~~~fk~~~awd-~i~~~R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~  165 (481)
T KOG3855|consen   88 NRVSSISPASISLFKSIGAWD-HIFHDRYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSES  165 (481)
T ss_pred             ceeecCCcchHHHHHhcCHHH-Hhhhhccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhc
Confidence            688888888877444444554 56667888888888877543 56666553322 246899999999999995 33 333


Q ss_pred             -C-eEEecceEEEEeCC-------e-----EEEcCCcEEEeeEEEecCCCCCCC-------C--CcceEEEEEEEEEecC
Q psy10545        459 -N-FLFNNKTVEIITPT-------S-----IRINNKKIINANCIIDGRGLKNSQ-------F--DGIYQIFLGQQWNLSS  515 (1428)
Q Consensus       459 -~-~~~~~~~v~~i~~~-------~-----v~l~~g~~~~a~lvI~AdG~~S~~-------~--~~~~q~~~g~~~~~~~  515 (1428)
                       + ++...+++..++..       .     |++.||..+..|++|+|||.||..       .  ..|.|++++++.+++.
T Consensus       166 ~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~  245 (481)
T KOG3855|consen  166 DNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEE  245 (481)
T ss_pred             CceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecc
Confidence             3 57777777666431       1     788899999999999999999871       1  1388999999998865


Q ss_pred             -CcCC-CCceEEecccCCCCCcceEEEEeeCCCCceE-EEeEEeccC---CCCCHHHHHHHHHHHHH-------------
Q psy10545        516 -PHGL-DIPIIMDATVNQKNDEYHFIYTLPLTPNSLM-IEDTRYTKK---PFLKIDMLKKSIKDYAI-------------  576 (1428)
Q Consensus       516 -~~~~-~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~-v~~~~~~~~---~~~~~~~~~~~l~~~~~-------------  576 (1428)
                       +..+ ..+..      ..+.|+  +.+||++++... ++++.-...   ..++.+.|-+.+...+.             
T Consensus       246 ~~~~~~~AwQR------FlP~Gp--iAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~  317 (481)
T KOG3855|consen  246 EAILNGVAWQR------FLPTGP--IALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDAD  317 (481)
T ss_pred             cccccchhHHh------cCCCCc--eeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchh
Confidence             3332 22211      112332  567999887543 333331111   12233334333322111             


Q ss_pred             ---------------Hc-----CCcccee---eeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HH
Q psy10545        577 ---------------KN-----RWKLKNI---EREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IA  629 (1428)
Q Consensus       577 ---------------~~-----~~~~~~~---~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a  629 (1428)
                                     ..     ......+   ....+..|||+..++..++.+|+++||||||.+||++|||.+    |+
T Consensus       318 ~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV  397 (481)
T KOG3855|consen  318 FALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDV  397 (481)
T ss_pred             hhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhH
Confidence                           00     0111222   223366899999999988999999999999999999999954    89


Q ss_pred             HHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545        630 IQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR  682 (1428)
Q Consensus       630 ~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~  682 (1428)
                      ..|++.+.+++.+|.++++...++-|++ .....---....+.+++.+.....+
T Consensus       398 ~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~  451 (481)
T KOG3855|consen  398 KILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP  451 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence            9999999999999999998755555532 1122222233445566666655554

>KOG1459|consensus

Probab=99.84  E-value=1.7e-21  Score=209.35  Aligned_cols=220  Identities=19%  Similarity=0.170  Sum_probs=169.6

Q ss_pred             cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHH---HhcCC-CCCcH
Q psy10545       1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKR---ACIGF-KMKEP 1263 (1428)
Q Consensus      1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~-~~~~p 1263 (1428)
                      ..+++++..|+.++.+.|.++|.+|.+.|.+|+++|+++++-..+ .       .-|..++..+..   .+.+. +.+.-
T Consensus        42 ~tsrsfa~Vi~~l~~elRNav~ifylVlraLdtvedd~sI~~d~k-v-------pil~~fhk~i~~~~w~f~~s~~k~r~  113 (413)
T KOG1459|consen   42 LTSRSFAAVIQELSSELRNAVCIFYLVLRALDTVEDDMSIPLDKK-V-------PILRVFHKQIYLVDWQFRESSPKDRQ  113 (413)
T ss_pred             hhcchHHHHHHhhCHHHhhhhheeeeehhhhccCCCCCccccccc-c-------cHHHHHHHHHhhcCceecCCChhhhh
Confidence            467889999999999999999999999999999999986543221 0       122223222211   11111 11222


Q ss_pred             HHHHHHHHHHHcCCCHHHHH--------HHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCC-----ccch
Q psy10545       1264 AFLALQKIISIHSFPVHLLF--------EHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVK-----EKDT 1330 (1428)
Q Consensus      1264 ~~~~l~~~~~~~~l~~~~~~--------~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~-----~~~~ 1330 (1428)
                      ++..+..+..+|....+-++        +|-.||+..+. .+.+|..|++.||+||||.||..+++++-..     ..+.
T Consensus       114 ~l~qf~~v~~ef~~L~e~Yqeviaeitk~mg~Gma~~~~-~~v~ti~d~d~yChyvagLVg~glsrlf~~s~le~~~~~~  192 (413)
T KOG1459|consen  114 LLPQFVVVSGEFLNLGEGYQEVIAEITKRMGLGMALFIP-EEVETIWDYDVYCHYVAGLVGIGLSRLFTASKLEDLLARL  192 (413)
T ss_pred             hccccccchHHHHHhhHHHHHHHHHHHHHHhchHHHhhH-HHHhHHHHHHHHHHHHHHhhCCchHhhhhHHHHhhhhhhH
Confidence            23333333334433333334        44557766664 4589999999999999999999999998653     2245


Q ss_pred             HHHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10545       1331 LNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTL 1410 (1428)
Q Consensus      1331 ~~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~l 1410 (1428)
                      .+.++.+|..||.|||+||+.||...||-|||.|+|.++--+.+|+..+++.+...+|++++.+.|..|...++.++..+
T Consensus       193 e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yls~l  272 (413)
T KOG1459|consen  193 EQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYLSKL  272 (413)
T ss_pred             HHHhcccchHHHHhHHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccchhHHHHHHHHHHHHHhhccHHHHHHHhhc
Confidence            78999999999999999999999999999999999999987789999999999999999999999999999999999999


Q ss_pred             CccchH
Q psy10545       1411 PLRSTL 1416 (1428)
Q Consensus      1411 p~~~~~ 1416 (1428)
                      ..++.+
T Consensus       273 ~~qsvf  278 (413)
T KOG1459|consen  273 RTQSVF  278 (413)
T ss_pred             ccHHHH
Confidence            999876

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.83  E-value=1.4e-19  Score=219.70  Aligned_cols=330  Identities=17%  Similarity=0.128  Sum_probs=184.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      |++|+|+||+|+++|+.|+++|++|+|+|+++.+....    +  +....|.++.+....  .                 
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~----~--~~~~~~~~l~~~~~~--~-----------------   55 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAAT----P--GFDNRVSALSAASIR--L-----------------   55 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCC----C--CCCcceeecCHHHHH--H-----------------
Confidence            46899999999999999999999999999997651000    0  011233444443221  1                 


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEEE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVEI  469 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~  469 (1428)
                        +..+++|+ .+......++..+..+.... ..+.++.........+++++|..|.+.|.+.+.+.+  .++.+++|++
T Consensus        56 --l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~  132 (385)
T TIGR01988        56 --LEKLGVWD-KIEPDRAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVE  132 (385)
T ss_pred             --HHHCCchh-hhhhhcCCCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEE
Confidence              11122222 11110112223333333221 233343222222335689999999999999998765  5788899999


Q ss_pred             EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545        470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY  536 (1428)
Q Consensus       470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  536 (1428)
                      ++..  .  +++.+|.++++|+||+|||.+|..   +  .    .+.+.++...+....++..  .....+.   . .  
T Consensus       133 i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~-~--  204 (385)
T TIGR01988       133 LPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQG--TAWERFT---P-T--  204 (385)
T ss_pred             EEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCC--EEEEEec---C-C--
Confidence            8643  2  566788899999999999999761   1  1    1223344434443333221  1111111   1 2  


Q ss_pred             eEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceee-eeeeeeecccCCchhhhhccCcccc
Q psy10545        537 HFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIE-REEIGSIPIALKNEKIIKFKKTICV  611 (1428)
Q Consensus       537 ~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~~~~~~~~~~~rv~lv  611 (1428)
                      ++++++|++++..++........    ...+.+++.+.+.+.+.   .....+. ......+|+..........+|++|+
T Consensus       205 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Li  281 (385)
T TIGR01988       205 GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG---SRLGAITLVGERHAFPLSLTHAKRYVAPRLALI  281 (385)
T ss_pred             CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh---hhcCceEeccCcceeechhhhhhheecCceEEE
Confidence            24677899888776654432211    11234555555555442   2222332 2334678886655554456899999


Q ss_pred             cccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        612 GLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       612 GdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      |||||.++|++|||++.|++.|..++..+.    .+.+.+....++.|++ +.......+...+.+.+++.....
T Consensus       282 GDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~  356 (385)
T TIGR01988       282 GDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFP  356 (385)
T ss_pred             ecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999997655555544444443    2223333333343433 222233333345556666665543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.82  E-value=3.8e-20  Score=193.69  Aligned_cols=322  Identities=16%  Similarity=0.172  Sum_probs=197.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      .+|+|||+||+||+||+.|+.+|++|+|+||+.-+|||+.|.+..|-.+|.|+++|.. .+.+.+..+.+..+     .+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~-----gl   76 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDD-----GL   76 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhC-----Cc
Confidence            4799999999999999999999999999999999999999999998889999999975 34445554444310     00


Q ss_pred             EecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhh
Q psy10545        791 LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI  870 (1428)
Q Consensus       791 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  870 (1428)
                      +.       .+..+ .+.+.                                                            
T Consensus        77 V~-------~W~~~-~~~~~------------------------------------------------------------   88 (331)
T COG3380          77 VD-------VWTPA-VWTFT------------------------------------------------------------   88 (331)
T ss_pred             ee-------ecccc-ccccc------------------------------------------------------------
Confidence            00       00000 00000                                                            


Q ss_pred             cccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHcCcEEEe
Q psy10545        871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLIL  950 (1428)
Q Consensus       871 ~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~  950 (1428)
                                                ..  +..|....             -.|.-.-||.+|++.|+.-     .+|++
T Consensus        89 --------------------------~~--~~~~~~d~-------------~pyvg~pgmsalak~LAtd-----L~V~~  122 (331)
T COG3380          89 --------------------------GD--GSPPRGDE-------------DPYVGEPGMSALAKFLATD-----LTVVL  122 (331)
T ss_pred             --------------------------cC--CCCCCCCC-------------CccccCcchHHHHHHHhcc-----chhhh
Confidence                                      00  00000000             0022245788888877663     57999


Q ss_pred             CceeeEEEEeCCeEEEEEecCC-cEEEcCEEEEcCCHHHHHHHhcCC--CCCChhHHHHHhhcCCCCceEEEEEeecCCc
Q psy10545        951 NSQVISIYVNNNKVNKVHLKNG-QIFDADIIVSNADIINTYRNLLGQ--YAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus       951 ~~~V~~I~~~~~~v~~V~~~~G-~~i~ad~VV~A~~~~~~~~~Ll~~--~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
                      +++|++|...++ .+.+.+++| +...+|.||+|+|.+++.. |+..  ..+|+..+..+..+.|. +++.+.++|..+.
T Consensus       123 ~~rVt~v~~~~~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~-LLt~~~~~~p~~l~~~~a~V~y~-Pc~s~~lg~~q~l  199 (331)
T COG3380         123 ETRVTEVARTDN-DWTLHTDDGTRHTQFDDVVLAIPAPQTAT-LLTTDADDLPAALRAALADVVYA-PCWSAVLGYPQPL  199 (331)
T ss_pred             hhhhhhheecCC-eeEEEecCCCcccccceEEEecCCCcchh-hcCcccccchHHHHHhhccceeh-hHHHHHhcCCccC
Confidence            999999998865 499999666 5678999999999999987 5543  45688888899999998 5678888888774


Q ss_pred             CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHH
Q psy10545       1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIV 1107 (1428)
Q Consensus      1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~v 1107 (1428)
                      + .|...+++                 .+.+..++.... ..|+..|.+. ++.+.......   ....+.++++.+..+
T Consensus       200 ~-~P~~G~~v-----------------dg~~laWla~d~-sK~g~~p~~~-~~vvqasp~wS---r~h~~~~~e~~i~~l  256 (331)
T COG3380         200 D-RPWPGNFV-----------------DGHPLAWLARDA-SKKGHVPDGE-IWVVQASPDWS---REHLDHPAEQVIVAL  256 (331)
T ss_pred             C-CCCCCccc-----------------CCCeeeeeeccc-cCCCCCCcCc-eEEEEeCchHH---HHhhcCCHHHHHHHH
Confidence            2 11111222                 123444554432 2467778776 44444321110   112233445555444


Q ss_pred             HHHHHhccCC-CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccc
Q psy10545       1108 FMYLEQYCIP-NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKII 1186 (1428)
Q Consensus      1108 l~~L~~~~~P-~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA 1186 (1428)
                      ...... ..+ .+.         .|. |.. .   .+..|.......+.    |..-...-.+||+||||++ |+-+|||
T Consensus       257 ~aA~~~-~~~~~~~---------~p~-~s~-~---H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~-GgrVEgA  316 (331)
T COG3380         257 RAAAQE-LDGDRLP---------EPD-WSD-A---HRWRYAIPNDAVAG----PPLDADRELPLYACGDWCA-GGRVEGA  316 (331)
T ss_pred             HHhhhh-ccCCCCC---------cch-HHH-h---hccccccccccccC----CccccCCCCceeeeccccc-CcchhHH
Confidence            433333 332 111         111 111 0   11233333332221    2111111357999999998 6679999


Q ss_pred             cccccccccccc
Q psy10545       1187 KAGSKSFSSAIK 1198 (1428)
Q Consensus      1187 ~~sg~~~a~~i~ 1198 (1428)
                      .+||..+|+.|.
T Consensus       317 ~LSGlAaA~~i~  328 (331)
T COG3380         317 VLSGLAAADHIL  328 (331)
T ss_pred             HhccHHHHHHHH
Confidence            999999998875

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.82  E-value=8.9e-18  Score=201.42  Aligned_cols=319  Identities=16%  Similarity=0.229  Sum_probs=210.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--------------------CCeEEcccccccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--------------------DGFIFDAGPTVITD  769 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--------------------~G~~~d~G~~~i~~  769 (1428)
                      ..+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|++.                    ..|.+|..++.+..
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~   82 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA   82 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence            4699999999999999999999999999999999999999999843                    23445666776665


Q ss_pred             chHHHHHHHHhcccccccceEEecCCceEEEe-CCCcEEEecCCHHH-HHHHHHhhCcccHHHHHHHHHHHHHHHHHhhh
Q psy10545        770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKD-LEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYL  847 (1428)
Q Consensus       770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  847 (1428)
                      .+.+..++...+  +..++++...+..+  .+ .+|+...+|.+..+ +...+..++  ++..+.+|+..+......   
T Consensus        83 ~G~lv~lL~~s~--v~ryleF~~l~g~~--v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~~---  153 (443)
T PTZ00363         83 SGELVKILLHTD--VTRYLEFKVIDGSY--VYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDEN---  153 (443)
T ss_pred             CChHHHHHhhcC--ccceeeeEEeceEE--EEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhccC---
Confidence            566667777776  56678888877544  33 67788888875433 333222222  455666666655432210   


Q ss_pred             hhcccCcccHHHHHHhhHHHH-hhc-ccCCHHHHHHhhcCCHHHHHHHHh-hccccc----CCCCchhHHHHHHHHhc--
Q psy10545        848 SFASKSFLTINDMLFILPKLI-KIK-AWKSVYSIVSQFIKNDYLKQAFSF-NSLFIG----GNPFSTSSIYTLIHALE--  918 (1428)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g----~~p~~~s~~~~~~~~~~--  918 (1428)
                           +.           +.+ ..+ ...++.+|++++..++..+.++.. ......    ..|.... +..+..+..  
T Consensus       154 -----~~-----------~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~t-l~ri~~y~~S~  216 (443)
T PTZ00363        154 -----DP-----------ETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET-VMRIKLYMDSL  216 (443)
T ss_pred             -----Ch-----------hhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHH-HHHHHHHHHHH
Confidence                 00           000 111 257899999998888887776542 222211    1122111 111111111  


Q ss_pred             --c-ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        919 --Y-EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       919 --~-~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                        . ..+..+|.+|++.|+++|++.+...|++++++++|++|..++ +++++|++++|+++.|+.||+.....       
T Consensus       217 ~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~-------  289 (443)
T PTZ00363        217 SRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF-------  289 (443)
T ss_pred             hhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc-------
Confidence              1 123468899999999999999999999999999999999875 67889999999999999999976332       


Q ss_pred             CCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCC---cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCC
Q psy10545        995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL---AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLS 1071 (1428)
Q Consensus       995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s 1071 (1428)
                      +     ... +     ... .+....+.++.++|+.   ....+.+++.            ..+..+.+++..-+. ...
T Consensus       290 p-----~~~-~-----~~~-~v~R~i~i~~~pi~~~~~~~~~~i~~P~~------------~~~~~~~i~v~~~s~-~~~  344 (443)
T PTZ00363        290 P-----DKV-K-----KVG-KVIRCICILNHPIPNTNNANSCQIIIPQK------------QLGRKNDIYIMLVSS-NHG  344 (443)
T ss_pred             c-----ccc-c-----ccc-EEEEEEEEEcccccccCcCccEEEEECCc------------ccCCCCCEEEEEecC-CCC
Confidence            1     110 0     111 3555666778887654   2234555432            123344577766654 457


Q ss_pred             CCCCCccEEEEEEec
Q psy10545       1072 LAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1072 ~ap~G~~~l~v~~~~ 1086 (1428)
                      .+|.|+.++++.+..
T Consensus       345 ~cp~g~~i~~~st~~  359 (443)
T PTZ00363        345 VCPKGKYIAIISTTV  359 (443)
T ss_pred             cCCCCcEEEEEEEec
Confidence            789999999888865

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.82  E-value=3.9e-19  Score=215.22  Aligned_cols=327  Identities=17%  Similarity=0.162  Sum_probs=179.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcC-CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G-~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      |++|+|+||+|+++|+.|+++| ++|+|+|+.+.+....       +...+|.++.+....  .                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~-------~~~~~~~~l~~~~~~--~----------------   55 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQP-------GFDARSLALSYGSKQ--I----------------   55 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCC-------CCCCeeEeccHHHHH--H----------------
Confidence            4689999999999999999999 9999999987551000       112344555554321  1                


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~  468 (1428)
                         +..+++|+ .+.. ...+...+...... ...+.++..+......+|+++|..|++.|.+++.+. | .++.+++|+
T Consensus        56 ---l~~lgl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~  130 (382)
T TIGR01984        56 ---LEKLGLWP-KLAP-FATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYK  130 (382)
T ss_pred             ---HHHCCChh-hhHh-hcCccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEE
Confidence               11112221 1100 00111111111110 012222211112233568899999999999999874 6 677799999


Q ss_pred             EEeCC--e--EEEcCCcEEEeeEEEecCCCCCC--C-C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPT--S--IRINNKKIINANCIIDGRGLKNS--Q-F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~--~-~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      +++.+  .  |++.+|.+++||+||+|||.+|.  . .      ..+.+.++...+..+.+....  .+..+.   . .+
T Consensus       131 ~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~-~g  204 (382)
T TIGR01984       131 EIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGC--AFERFT---P-HG  204 (382)
T ss_pred             EEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCE--EEEeeC---C-CC
Confidence            98643  2  66678888999999999999975  1 1      123344554444443333221  111111   1 22


Q ss_pred             ceEEEEeeCCCC-ceEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545        536 YHFIYTLPLTPN-SLMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI  609 (1428)
Q Consensus       536 ~~f~~~lPl~~~-~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~  609 (1428)
                        .++++|+.++ ...+.......    ....+.+.+.+.+.+.+   +..+.++.. .....+|+..........+|++
T Consensus       205 --~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~  279 (382)
T TIGR01984       205 --PLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAF---GWRLGKITQVGERKTYPLKLRIAETHVHPRVV  279 (382)
T ss_pred             --CeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhccCeEEcCCccEeecchhhhhheecCCEE
Confidence              3567898776 43332221100    01123344444444433   444444432 2234677765555544568999


Q ss_pred             cccccccccccCCCCChHHHHHHHHHHHhhcccC-CCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcc
Q psy10545        610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSITT-NQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSN  680 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~  680 (1428)
                      +||||||.++|++|||++.++..|..++.++... .+......++.|++ ++..........+.+.++|....
T Consensus       280 LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~  352 (382)
T TIGR01984       280 LIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHI  352 (382)
T ss_pred             EEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999876666666666555432 12222333333333 22222333334455666665544

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07045 putative monooxygenase; Reviewed

Probab=99.81  E-value=5.4e-19  Score=214.08  Aligned_cols=287  Identities=15%  Similarity=0.125  Sum_probs=154.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+||+|+++|+.|+++|++|+|+|+++.+.           ....+..+.+....                   
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~-----------~~~~~~~l~~~~~~-------------------   55 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNR-----------AQNGADLLKPSGIG-------------------   55 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCccc-----------CCCcccccCccHHH-------------------
Confidence            578999999999999999999999999999987651           11111112221111                   


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc-CC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI-NN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~-~~~~~~~v~~  469 (1428)
                        .+..+++|+ .+......+...+..+........++..........+.++|..|.+.|.+++.. .| .++.+++|++
T Consensus        56 --~L~~lGl~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~  132 (388)
T PRK07045         56 --VVRAMGLLD-DVFAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIER  132 (388)
T ss_pred             --HHHHcCCHH-HHHhcccccccceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEE
Confidence              011111221 110000000111111111111111111000011123468999999999999865 45 6888999999


Q ss_pred             EeCC------eEEEcCCcEEEeeEEEecCCCCCC--C-C-C------cceEEEEEEEEEecCCcCCCCceEEecccCCCC
Q psy10545        470 ITPT------SIRINNKKIINANCIIDGRGLKNS--Q-F-D------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKN  533 (1428)
Q Consensus       470 i~~~------~v~l~~g~~~~a~lvI~AdG~~S~--~-~-~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1428)
                      ++.+      .|++++|+++++++||+|||.+|.  . . .      .+.+......+....+.......+  +.     
T Consensus       133 i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----  205 (388)
T PRK07045        133 IERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLY--VD-----  205 (388)
T ss_pred             EEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEE--Ec-----
Confidence            8642      267778889999999999999986  2 1 1      011222222222221111111111  11     


Q ss_pred             CcceEEEEeeCCCCceEEEeEEeccCC-----CCCHHHHHHHHHHHHHHcCCccceee----e-eeeeeecccCCchhhh
Q psy10545        534 DEYHFIYTLPLTPNSLMIEDTRYTKKP-----FLKIDMLKKSIKDYAIKNRWKLKNIE----R-EEIGSIPIALKNEKII  603 (1428)
Q Consensus       534 ~g~~f~~~lPl~~~~~~v~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~Pl~~~~~~~~  603 (1428)
                      ....++|++|++++...+.........     ....+.+.+.+.+++   +..+.+++    . .....+|+........
T Consensus       206 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (388)
T PRK07045        206 SNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLGRMNLDRY  282 (388)
T ss_pred             CCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecCccccccc
Confidence            112356788987776554333222111     112344444444443   22221111    1 1122456665544444


Q ss_pred             hccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        604 KFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       604 ~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ..+|+++||||||.++|++|||++.+++.|..+++++.
T Consensus       283 ~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~  320 (388)
T PRK07045        283 HKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLD  320 (388)
T ss_pred             cCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHH
Confidence            56999999999999999999998866666666665554

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.81  E-value=1.3e-18  Score=202.81  Aligned_cols=278  Identities=15%  Similarity=0.125  Sum_probs=171.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      |++|+|+|++|+++|+.|++.|++|+|+|+++.+           +...|+.++.+....  ... .+..     .    
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~-----------~~~~~~~~~~~~~~~--~l~-~~~~-----~----   58 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP-----------RYKPCGGALSPRVLE--ELD-LPLE-----L----   58 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-----------CcccccCccCHhHHH--Hhc-CCch-----h----
Confidence            6789999999999999999999999999998766           345577777664322  100 0000     0    


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                      . ...+               .......+.+..+..+.    ....+++++|..|.+.|.+++.+.| .++.+++|+.+.
T Consensus        59 ~-~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~  118 (295)
T TIGR02032        59 I-VNLV---------------RGARFFSPNGDSVEIPI----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVE  118 (295)
T ss_pred             h-hhhe---------------eeEEEEcCCCcEEEecc----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEE
Confidence            0 0000               00001111111111111    1235678999999999999998877 677889998875


Q ss_pred             C--Ce--EEEcC-CcEEEeeEEEecCCCCCC--C-CC---cceEEEEEEEEEecCCc--CCCCceEEecccCCCCCcceE
Q psy10545        472 P--TS--IRINN-KKIINANCIIDGRGLKNS--Q-FD---GIYQIFLGQQWNLSSPH--GLDIPIIMDATVNQKNDEYHF  538 (1428)
Q Consensus       472 ~--~~--v~l~~-g~~~~a~lvI~AdG~~S~--~-~~---~~~q~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~f  538 (1428)
                      .  +.  +.+.+ +.+++|++||+|||.+|.  . ..   ...+.+.+....+..+.  .......+.......  ..+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  196 (295)
T TIGR02032       119 IHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS--PGGY  196 (295)
T ss_pred             EeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC--CCce
Confidence            3  33  44443 457999999999999875  1 11   12344454433333331  111111112211111  1367


Q ss_pred             EEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcC-CccceeeeeeeeeecccCCchhhhhccCcccccccccc
Q psy10545        539 IYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNR-WKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANL  617 (1428)
Q Consensus       539 ~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~  617 (1428)
                      +|++|+++++..++.+.......   ...++.++++++.++ +...++.......+|+..... ....+|++++|||||.
T Consensus       197 ~~~~P~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~liGDAA~~  272 (295)
T TIGR02032       197 GWVFPKGDGTANVGVGSRSAEEG---EDLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDD-KTVRGNVLLVGDAAGH  272 (295)
T ss_pred             EEEEeCCCCeEEEeeeeccCCCC---CCHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCC-ccccCCEEEEecccCC
Confidence            99999999888887766654322   233444555554433 222334444556777765433 2356999999999999


Q ss_pred             cccCCCCChHHHHHHHHHHHhh
Q psy10545        618 LHATTGYSLPIAIQLAENIAKY  639 (1428)
Q Consensus       618 vhP~~G~G~~~a~~la~~l~~~  639 (1428)
                      ++|++|||++.|++.|..++++
T Consensus       273 ~~P~~g~G~~~a~~~a~~aa~~  294 (295)
T TIGR02032       273 VKPLTGEGIYYAMRSGDVAAEV  294 (295)
T ss_pred             CCCccCCcHHHHHHHHHHHHhh
Confidence            9999999999999999888765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08244 hypothetical protein; Provisional

Probab=99.81  E-value=7.9e-19  Score=218.94  Aligned_cols=296  Identities=11%  Similarity=0.064  Sum_probs=170.4

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+||+|+++|+.|+++|++|+|||+++.+             ..++.|+...+..                   
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~-------------~~~~ra~~l~~~~-------------------   50 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET-------------VPYSKALTLHPRT-------------------   50 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-------------CCCcceeEecHHH-------------------
Confidence            57899999999999999999999999999998755             1122222222222                   


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                      ...++.+++|+ .+.. ...++.......+. ..+.+..... .....+++++..+++.|.+.+.+.| .++.+++|+++
T Consensus        51 ~e~l~~lGl~~-~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i  126 (493)
T PRK08244         51 LEILDMRGLLE-RFLE-KGRKLPSGHFAGLD-TRLDFSALDT-SSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAV  126 (493)
T ss_pred             HHHHHhcCcHH-HHHh-hcccccceEEeccc-ccCCcccCCC-CCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEE
Confidence            12222333333 1110 11112211111111 1122211111 1123567999999999999998777 68889999988


Q ss_pred             eCC--e--EEEc--CC-cEEEeeEEEecCCCCCC--C-C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545        471 TPT--S--IRIN--NK-KIINANCIIDGRGLKNS--Q-F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND  534 (1428)
Q Consensus       471 ~~~--~--v~l~--~g-~~~~a~lvI~AdG~~S~--~-~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1428)
                      +.+  .  +++.  +| .+++|++||+|||.+|.  . .      ..+.+.++...+....+.......+  +.   . .
T Consensus       127 ~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-~  200 (493)
T PRK08244        127 RQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSL--CT---R-E  200 (493)
T ss_pred             EEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEE--Ee---C-C
Confidence            643  2  4443  45 47999999999999985  1 1      1233445544554444433221111  11   1 1


Q ss_pred             cceEEEEeeCCCCceEEEeEEecc-----CCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcc
Q psy10545        535 EYHFIYTLPLTPNSLMIEDTRYTK-----KPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTI  609 (1428)
Q Consensus       535 g~~f~~~lPl~~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~  609 (1428)
                        ++++++|++++...+.......     ....+.+++.+.+.+.+   +..++.........+++....+..+..+||+
T Consensus       201 --g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~  275 (493)
T PRK08244        201 --GGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRIC---GTDFGLNDPVWMSRFGNATRQAERYRSGRIF  275 (493)
T ss_pred             --ceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhh---CCCCCcCCeeEEEecccceeeHhhhccCcEE
Confidence              2468899988765553322111     11224566666665554   3333211112223566666666655668999


Q ss_pred             cccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q psy10545        610 CVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK  657 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~  657 (1428)
                      |+|||||.++|++|||++    ||..|+..|+..+. +  .....+++.|++
T Consensus       276 L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~-g--~~~~~lL~~Ye~  324 (493)
T PRK08244        276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-G--WAPDWLLDSYHA  324 (493)
T ss_pred             EeecceeccCCccccccccchhhHHHHHHHHHHHHc-C--CCCchhhhhhHH
Confidence            999999999999999976    56666666665542 2  223445555544

>PRK10015 oxidoreductase; Provisional

Probab=99.81  E-value=1.4e-18  Score=210.92  Aligned_cols=332  Identities=12%  Similarity=0.111  Sum_probs=184.1

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ++|+||+|+||+|+++|+.||++|++|+|||+.+.+           |.|+||||.......   ....|+...   +. 
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~-----------g~k~~~gg~i~~~~~---~~l~~~~~~---~~-   66 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA-----------GCKNMTGGRLYAHTL---EAIIPGFAA---SA-   66 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC-----------CcccccCceeecccH---HHHcccccc---cC-
Confidence            479999999999999999999999999999998877           778777766443211   111222100   00 


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccc-cCccEEEcCCCcccc-cccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYS-WPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                                   .+.  ....-..+.... -....+.+....... ...+|+|.|..|++.|.+++.+.| .++.+++|
T Consensus        67 -------------~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V  131 (429)
T PRK10015         67 -------------PVE--RKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRV  131 (429)
T ss_pred             -------------Ccc--ccccceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEE
Confidence                         000  000000000000 001123332222112 124789999999999999998888 68888899


Q ss_pred             EEEeCC--eEE--EcCCcEEEeeEEEecCCCCCCC---CC-----cceEEEEEEEEEecCCcCC----------CCceEE
Q psy10545        468 EIITPT--SIR--INNKKIINANCIIDGRGLKNSQ---FD-----GIYQIFLGQQWNLSSPHGL----------DIPIIM  525 (1428)
Q Consensus       468 ~~i~~~--~v~--l~~g~~~~a~lvI~AdG~~S~~---~~-----~~~q~~~g~~~~~~~~~~~----------~~~~~~  525 (1428)
                      +++..+  .++  ..++.+++|++||+|||.+|..   ..     ...+..++....+..|...          ....+.
T Consensus       132 ~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~  211 (429)
T PRK10015        132 DALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWL  211 (429)
T ss_pred             EEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEE
Confidence            887632  332  2355689999999999999761   11     1223344554333332110          011122


Q ss_pred             ecccCCCCCcceEEEEeeCCCCceEEEeEEeccC---CCCCHHHHHHHHHH--HHHHcCCccceeeeeeeeeecccCCch
Q psy10545        526 DATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK---PFLKIDMLKKSIKD--YAIKNRWKLKNIEREEIGSIPIALKNE  600 (1428)
Q Consensus       526 ~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~Pl~~~~~  600 (1428)
                      .++.... +-++..|+.|. .+.++|+.......   ...+...+.+.+.+  .++. -+..+++++...+.+|.+....
T Consensus       212 ~~g~~~~-g~~g~G~~~~~-~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~-~~~~~~~~e~~~~~ip~gg~~~  288 (429)
T PRK10015        212 FAGSPSD-GLMGGGFLYTN-KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRP-LISGGKLLEYSAHMVPEGGLAM  288 (429)
T ss_pred             ecCccCC-CCCCceEEEEc-CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHH-HhcCCEEEEEeeEEcccCCccc
Confidence            2221111 11334455564 56778776543221   11233333333321  1111 0122455556678899875431


Q ss_pred             -hhhhccCccccccccccccc--CCCCChHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHH-HhHHHHHHHHH
Q psy10545        601 -KIIKFKKTICVGLRANLLHA--TTGYSLPIAIQLAENIAKYSIT---TNQINSTVLFKLVKKFIINH-QKKQRFFCMLN  673 (1428)
Q Consensus       601 -~~~~~~rv~lvGdAA~~vhP--~~G~G~~~a~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  673 (1428)
                       ++.+.+++++|||||+.++|  ++|+|+..|+..+..+++++.+   ..+.+...+..|.+++.... .+....++-+.
T Consensus       289 ~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~  368 (429)
T PRK10015        289 VPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIP  368 (429)
T ss_pred             CCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChH
Confidence             23466999999999999995  5999999888877777766553   23445555544443344332 22234444444


Q ss_pred             HHhhh
Q psy10545        674 RLFFL  678 (1428)
Q Consensus       674 ~~f~~  678 (1428)
                      .+|.+
T Consensus       369 ~~~~~  373 (429)
T PRK10015        369 ALMEN  373 (429)
T ss_pred             hhhcC
Confidence            45444

>PRK07588 hypothetical protein; Provisional

Probab=99.80  E-value=9.8e-19  Score=212.09  Aligned_cols=287  Identities=14%  Similarity=0.076  Sum_probs=154.1

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+|++|+++|++|+++|++|+|+|+++..             ...|.++.......                   
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~-------------~~~g~~~~l~~~~~-------------------   49 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL-------------RTGGYMVDFWGVGY-------------------   49 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc-------------cCCCeEEeccCcHH-------------------
Confidence            4689999999999999999999999999998654             11122221111110                   


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCcc-EEEcCCCc--ccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-QVKFPKFN--RKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                      ..++.|++|+ .+.. ...++..+..++..+. ...++...  ......++.++|..|.+.|.+++.. + .++.+++|+
T Consensus        50 ~~l~~lGl~~-~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~i~~~~~v~  126 (391)
T PRK07588         50 EVAKRMGITD-QLRE-AGYQIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVETIFDDSIA  126 (391)
T ss_pred             HHHHHcCCHH-HHHh-ccCCccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeEEEeCCEEe
Confidence            1111223332 1110 1112233322221111 11122111  1122346789999999999987654 5 688899999


Q ss_pred             EEeCCe----EEEcCCcEEEeeEEEecCCCCCCCCC---c---ceEEEEEEEE---Eec--CCcCCCCceEEecccCCCC
Q psy10545        469 IITPTS----IRINNKKIINANCIIDGRGLKNSQFD---G---IYQIFLGQQW---NLS--SPHGLDIPIIMDATVNQKN  533 (1428)
Q Consensus       469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~~~---~---~~q~~~g~~~---~~~--~~~~~~~~~~~~~~~~~~~  533 (1428)
                      +++.++    |++++|+++++|+||+|||.+|....   .   ......+..+   .+.  .++.. .. ++.+.   . 
T Consensus       127 ~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~---~-  200 (391)
T PRK07588        127 TIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDE-RT-YVLYN---E-  200 (391)
T ss_pred             EEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCC-ce-EEEEe---C-
Confidence            997432    67778989999999999999977211   1   1111222221   111  11111 11 11111   1 


Q ss_pred             CcceEEEEeeCCCCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccceeee----eeee-eecccCCchhhhhcc
Q psy10545        534 DEYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIER----EEIG-SIPIALKNEKIIKFK  606 (1428)
Q Consensus       534 ~g~~f~~~lPl~~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~-~~Pl~~~~~~~~~~~  606 (1428)
                      .+ .++.++|++++...+........  ...+.+...+.+.+.+...++....+..    .... ..++..........+
T Consensus       201 ~g-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g  279 (391)
T PRK07588        201 VG-RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRG  279 (391)
T ss_pred             CC-CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccC
Confidence            11 24567788777544333322221  1223445555555554333333222211    1101 111211222223558


Q ss_pred             CcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        607 KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      |++|+|||||.++|++|||++.+++.|..|+..+.
T Consensus       280 rv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~  314 (391)
T PRK07588        280 RVALVGDAAACPSLLGGEGSGLAITEAYVLAGELA  314 (391)
T ss_pred             CEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877666666666654

>PRK06834 hypothetical protein; Provisional

Probab=99.80  E-value=1.7e-18  Score=213.38  Aligned_cols=312  Identities=12%  Similarity=0.078  Sum_probs=178.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|++|+|+||+|+++|+.|+++|++|+|||+.+.+..          ....+.|+.+..+                   
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~----------~~~Ra~~l~~~s~-------------------   53 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQEL----------VGSRAGGLHARTL-------------------   53 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC----------CCcceeeECHHHH-------------------
Confidence            36889999999999999999999999999999875410          0112334444332                   


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccc-cccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                        ..+..+++|+. +.+. ..+..   ...+  ....++...... ...++++.+..+++.|.+.+++.| .++.+++|+
T Consensus        54 --~~L~~lGl~~~-l~~~-~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~  124 (488)
T PRK06834         54 --EVLDQRGIADR-FLAQ-GQVAQ---VTGF--AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVT  124 (488)
T ss_pred             --HHHHHcCcHHH-HHhc-CCccc---ccee--eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEE
Confidence              11222333331 1100 00000   0011  111121111111 134577899999999999998877 688899999


Q ss_pred             EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      +++.+  .  |++.+|.+++|++||+|||.+|..   .      ..+.+.++.+.+.++.++.  ...  .+      ..
T Consensus       125 ~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~--~~~--~~------~~  194 (488)
T PRK06834        125 GFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE--WGV--HR------DA  194 (488)
T ss_pred             EEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC--cce--ee------CC
Confidence            98743  2  566677889999999999999861   1      1244566666665554321  000  00      11


Q ss_pred             ceEEEEeeCC-CCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccccc
Q psy10545        536 YHFIYTLPLT-PNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVG  612 (1428)
Q Consensus       536 ~~f~~~lPl~-~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvG  612 (1428)
                      .+++.++|+. ++...+........  ...+.+++.+.+.+.+   +..++.........|+.....+.++..+||+|+|
T Consensus       195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaG  271 (488)
T PRK06834        195 LGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAVY---GTDYGIHSPTWISRFTDMARQAASYRDGRVLLAG  271 (488)
T ss_pred             CceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHhh---CCCCccccceeEEeccccceecccccCCcEEEEe
Confidence            2234556665 44443322211111  1234566666666554   4444322222235677777767666779999999


Q ss_pred             ccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHHH-HHHHHhHHHHHHHHHHHh
Q psy10545        613 LRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKKF-IINHQKKQRFFCMLNRLF  676 (1428)
Q Consensus       613 dAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~f  676 (1428)
                      ||||.+||++|||+|    ||..|+-.|+..+. +  .....+++.|++. .....+.....+.+..++
T Consensus       272 DAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~-g--~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~  337 (488)
T PRK06834        272 DAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVK-G--TSPESLLDTYHAERHPVAARVLRNTMAQVALL  337 (488)
T ss_pred             eccccCCccccccccccHHHHHHHHHHHHHHHc-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999977    55555555555443 2  2234455555442 222333333444444444

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.80  E-value=3.3e-18  Score=208.26  Aligned_cols=330  Identities=15%  Similarity=0.131  Sum_probs=181.9

Q ss_pred             HHHHHhcCCchHHHHHHHHhhc---CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTA---GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~---G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      .|++|+|+||+|+++|+.|+++   |++|+|+|+.....      ..+-++..++.++.+..... +             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~------~~~~~~~~~~~~l~~~~~~~-l-------------   63 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPES------DAHPGFDARAIALAAGTCQQ-L-------------   63 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCccc------ccCCCCCccceeccHHHHHH-H-------------
Confidence            4789999999999999999998   99999999853210      01113345666676643321 1             


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK  465 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~  465 (1428)
                             +.+++|+ .+.. ...++..+...+.. ...+.+...+...+..++.++|..|++.|.+.+.+. | .++.++
T Consensus        64 -------~~lgl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~  134 (395)
T PRK05732         64 -------ARLGVWQ-ALAD-CATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPA  134 (395)
T ss_pred             -------HHCCChh-hhHh-hcCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCC
Confidence                   1122232 1111 11122222221111 112222222223334568899999999999988664 5 677789


Q ss_pred             eEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCC
Q psy10545        466 TVEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQK  532 (1428)
Q Consensus       466 ~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~  532 (1428)
                      +|+++..+  .  |++++|.++++++||+|||.+|..   ..      .+.+.++...+....++..  ..+..+.    
T Consensus       135 ~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----  208 (395)
T PRK05732        135 RVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQG--RAFERFT----  208 (395)
T ss_pred             EEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCC--EEEEeec----
Confidence            99988642  2  566788889999999999999761   10      1223333333332222111  1111111    


Q ss_pred             CCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhhccC
Q psy10545        533 NDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIKFKK  607 (1428)
Q Consensus       533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~~~r  607 (1428)
                      ..|  .++++|+++++..+........    ...+.+.+.+.+.+.   +++..+.+... ....+|+..........+|
T Consensus       209 ~~g--~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gr  283 (395)
T PRK05732        209 EHG--PLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA---FGWRLGRITHAGKRSAYPLALVTAAQQISHR  283 (395)
T ss_pred             CCC--CEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH---HHhhhcceeecCCcceecccccchhhhccCc
Confidence            122  2578899888765433211110    111233344444333   35554444332 2346777665555455689


Q ss_pred             cccccccccccccCCCCChHHHHHHHHHHHhhc----ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545        608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      ++|+|||||.++|++|||++.++..|..+++++    ..+.+.+....++.|++ ++..........+.+.++|.+...
T Consensus       284 v~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~  362 (395)
T PRK05732        284 LALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWA  362 (395)
T ss_pred             EEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            999999999999999999765555554444444    33333333333444433 222223334455567777766543

>PRK11445 putative oxidoreductase; Provisional

Probab=99.78  E-value=9.8e-18  Score=199.38  Aligned_cols=283  Identities=12%  Similarity=0.120  Sum_probs=159.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+||+|+++|++|+++ ++|+|||+++.... .     | ..++||+.|++.... .+.+.........+..  
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~-~-----~-~~~~~g~~l~~~~~~-~L~~lgl~~~~~~~~~--   70 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGT-E-----G-FSKPCGGLLAPDAQK-SFAKDGLTLPKDVIAN--   70 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcccc-c-----c-ccCcCcCccCHHHHH-HHHHcCCCCCcceeec--
Confidence            4789999999999999999999 99999998875410 0     1 135677777775433 1111110000000000  


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                                      .....+.          .+.+... .......++.|+|..|++.|.+.+ ..| .++.+++|++
T Consensus        71 ----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~  123 (351)
T PRK11445         71 ----------------PQIFAVK----------TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRK  123 (351)
T ss_pred             ----------------cccceee----------EecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence                            0000000          1111110 011223567899999999999864 445 6788889988


Q ss_pred             EeC--Ce--EEE-cCCc--EEEeeEEEecCCCCCCCCC---c--ceEEEEEEEEEecCCcCCC-CceEEecccCCCCCcc
Q psy10545        470 ITP--TS--IRI-NNKK--IINANCIIDGRGLKNSQFD---G--IYQIFLGQQWNLSSPHGLD-IPIIMDATVNQKNDEY  536 (1428)
Q Consensus       470 i~~--~~--v~l-~~g~--~~~a~lvI~AdG~~S~~~~---~--~~q~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~g~  536 (1428)
                      ++.  +.  |++ .+|.  +++|++||+|||.+|....   .  ......++......+.... ...+++..  ..   .
T Consensus       124 i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~---~  198 (351)
T PRK11445        124 IWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQWFAEKHPVPFYSCIFDNE--IT---D  198 (351)
T ss_pred             EEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhEEEEEEEecCCCCCCCcceEEecc--CC---C
Confidence            864  22  443 4564  6999999999999976211   1  1111122221222222111 11222222  11   2


Q ss_pred             eEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchh-hhhccCcccccccc
Q psy10545        537 HFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEK-IIKFKKTICVGLRA  615 (1428)
Q Consensus       537 ~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~-~~~~~rv~lvGdAA  615 (1428)
                      .|.|.+|..+. ..++.+ +. . ....+.++ .+.+++..++...+++++.+.+.++....... ....+|+++|||||
T Consensus       199 ~~~W~~p~~~~-~~~g~~-~~-~-~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAA  273 (351)
T PRK11445        199 CYSWSISKDGY-FIFGGA-YP-M-KDGRERFE-TLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAA  273 (351)
T ss_pred             ceEEEeCCCCc-EEeccc-cc-c-cchHHHHH-HHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEccc
Confidence            47899998553 333321 21 1 11122332 44455555566666665544333332221111 11247899999999


Q ss_pred             cccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        616 NLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       616 ~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      |.+||++|||++.|+..+..+++++.+
T Consensus       274 g~i~P~tG~Gi~~al~sa~~la~~l~~  300 (351)
T PRK11445        274 GFISPSSLEGISYALDSARILSEVLNK  300 (351)
T ss_pred             CccCCccCccHHHHHHhHHHHHHHHHh
Confidence            999999999999999999988888764

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.77  E-value=5.1e-18  Score=204.71  Aligned_cols=285  Identities=11%  Similarity=0.046  Sum_probs=146.7

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+||+|+++|+.|+++|++|+|+|+++.+..         ..+.+.+.+.+..+                    
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~---------~~~~~a~~l~~~~~--------------------   53 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV---------LGRIRAGVLEQGTV--------------------   53 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc---------CCceeEeeECHHHH--------------------
Confidence            4688999999999999999999999999999875300         01122222322211                    


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                       ..+..+++|+ .+.. ...++..+..+... ...+.++...  .........+..+.+.|.+++.+.| .++.+.+++.
T Consensus        54 -~~L~~lGl~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~  128 (390)
T TIGR02360        54 -DLLREAGVDE-RMDR-EGLVHEGTEIAFDGQRFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVR  128 (390)
T ss_pred             -HHHHHCCChH-HHHh-cCceecceEEeeCCEEEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEE
Confidence             1222334443 2211 11222333322211 1223333211  1112223456788899999887766 5666666665


Q ss_pred             EeC---C--eEEEc-CCc--EEEeeEEEecCCCCCCC---CCc--c--eEEE--EEEE-EEecCCcCCCCceEEecccCC
Q psy10545        470 ITP---T--SIRIN-NKK--IINANCIIDGRGLKNSQ---FDG--I--YQIF--LGQQ-WNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       470 i~~---~--~v~l~-~g~--~~~a~lvI~AdG~~S~~---~~~--~--~q~~--~g~~-~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      +..   +  .|++. ||+  +++||+||||||.+|..   ...  .  .+.+  .++. +....+... ...+ ...   
T Consensus       129 ~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~---  203 (390)
T TIGR02360       129 LHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVS-HELI-YSN---  203 (390)
T ss_pred             EEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCC-CceE-EEe---
Confidence            532   2  27775 775  69999999999999862   110  0  0111  1111 111111111 1111 111   


Q ss_pred             CCCcceEEEEeeCCC-Cce-EEEeEEecc-CCCCCHHHHHHHHHHHHHHcCCccceeeeee----eeeecccCCchhhhh
Q psy10545        532 KNDEYHFIYTLPLTP-NSL-MIEDTRYTK-KPFLKIDMLKKSIKDYAIKNRWKLKNIEREE----IGSIPIALKNEKIIK  604 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~-~~~-~v~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~Pl~~~~~~~~~  604 (1428)
                      .  +..|+ +.|+.+ +.. +........ ......+.+.+.+.+.+   ...+.+++...    ...+|+.........
T Consensus       204 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  277 (390)
T TIGR02360       204 H--ERGFA-LCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLRSFVCEPMQ  277 (390)
T ss_pred             C--CCceE-EEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHHhhccccCc
Confidence            1  11122 234432 211 111100000 11122344444554433   22222221111    245677555444445


Q ss_pred             ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        605 FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       605 ~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      .+|++|||||||.++|.+|||++.+++.|..|++++.
T Consensus       278 ~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~  314 (390)
T TIGR02360       278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALL  314 (390)
T ss_pred             cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHH
Confidence            6999999999999999999998877777777776664

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.77  E-value=6e-19  Score=211.66  Aligned_cols=291  Identities=15%  Similarity=0.121  Sum_probs=149.1

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+||+|+++|+.|+++|++|+|+|+++.+           ....+|.++.+..+.. +...             
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~-----------~~~~~~~~l~~~~~~~-l~~l-------------   56 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP-----------RPKGRGIGLSPNSLRI-LQRL-------------   56 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC-----------CCSSSSEEEEHHHHHH-HHHT-------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc-----------cccccccccccccccc-cccc-------------
Confidence            36789999999999999999999999999998766           4445677777665431 1111             


Q ss_pred             CCCCceeeeccCCcCcccc-cccccccccc-------cCccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCC-eE
Q psy10545        392 SVKNHIWSFHQNDISSSQY-MLIKPLITYS-------WPSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINN-FL  461 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~  461 (1428)
                             ++|+ .+..... ..+.....+.       |..........+ .......++++|..|++.|.+.+++.| .+
T Consensus        57 -------gl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i  128 (356)
T PF01494_consen   57 -------GLLD-EILARGSPHEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDI  128 (356)
T ss_dssp             -------TEHH-HHHHHSEEECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEE
T ss_pred             -------cchh-hhhhhcccccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhh
Confidence                   1111 0000000 0000000000       000000000001 112234678999999999999998888 68


Q ss_pred             EecceEEEEeCC--e--EEEc---CCc--EEEeeEEEecCCCCCC---CCCc--------ceEEEEEEEEEecCCcCCCC
Q psy10545        462 FNNKTVEIITPT--S--IRIN---NKK--IINANCIIDGRGLKNS---QFDG--------IYQIFLGQQWNLSSPHGLDI  521 (1428)
Q Consensus       462 ~~~~~v~~i~~~--~--v~l~---~g~--~~~a~lvI~AdG~~S~---~~~~--------~~q~~~g~~~~~~~~~~~~~  521 (1428)
                      ..+++|++++.+  .  +++.   +|.  +++||+||+|||.+|.   .+..        +...+.++..+...+.....
T Consensus       129 ~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (356)
T PF01494_consen  129 RFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWED  208 (356)
T ss_dssp             EESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSC
T ss_pred             eeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccccc
Confidence            889999887643  2  2332   332  6999999999999986   1111        11122222222211111111


Q ss_pred             ceEEecccCCCCCcceEEEEeeCCCC-ceEEEeEE-eccC-CCCCHHHHHHHHHHHHHH-cCCccceeeeeeeeeecccC
Q psy10545        522 PIIMDATVNQKNDEYHFIYTLPLTPN-SLMIEDTR-YTKK-PFLKIDMLKKSIKDYAIK-NRWKLKNIEREEIGSIPIAL  597 (1428)
Q Consensus       522 ~~~~~~~~~~~~~g~~f~~~lPl~~~-~~~v~~~~-~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~Pl~~  597 (1428)
                      ..++...      ...+++++|+.++ ...+.... +... .....+...+.+.+.+.. ++.............+|+..
T Consensus       209 ~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (356)
T PF01494_consen  209 HCFIYSP------PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQ  282 (356)
T ss_dssp             EEEEEEE------TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEE
T ss_pred             ccccccc------cccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence            1111111      1223478888773 22221111 1111 111222222333322222 12222222223345566655


Q ss_pred             CchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        598 KNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       598 ~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ........+|++|||||||.++|++|||++.|+..|..|++.+.
T Consensus       283 ~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~  326 (356)
T PF01494_consen  283 RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLA  326 (356)
T ss_dssp             EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHH
Confidence            55544456899999999999999999998765555555554444

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02985 squalene monooxygenase

Probab=99.77  E-value=1.1e-17  Score=206.24  Aligned_cols=326  Identities=13%  Similarity=0.077  Sum_probs=163.6

Q ss_pred             CCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEE
Q psy10545        306 KLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVL  385 (1428)
Q Consensus       306 ~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~  385 (1428)
                      ..+..+.|+||+|+|++|+++|++|+++|++|+|+|+.+..  +.         ..+|-.+++...              
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~--~~---------~~~g~~L~p~g~--------------   92 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLRE--PE---------RMMGEFMQPGGR--------------   92 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCC--Cc---------cccccccCchHH--------------
Confidence            34445678999999999999999999999999999987532  11         112222222211              


Q ss_pred             EeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcc--cccccceeeechHHHHHHHHHhccC-CeE
Q psy10545        386 LLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNR--KIFSGYYSICSKHLNSYLIRALGIN-NFL  461 (1428)
Q Consensus       386 ~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~-~~~  461 (1428)
                             ..++.+++|+ .+......+...+.++..+. ..+.++....  .....+++++|.+|.+.|.+++.+. |+.
T Consensus        93 -------~~L~~LGl~d-~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~  164 (514)
T PLN02985         93 -------FMLSKLGLED-CLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVR  164 (514)
T ss_pred             -------HHHHHcCCcc-hhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeE
Confidence                   1111223332 12111122333333332221 2334442211  1123568999999999999999765 443


Q ss_pred             EecceEEEEe-CCe----EEE--cCCc--EEEeeEEEecCCCCCCC---CC----cceEEEEEEEEEe-cCCcCCCCceE
Q psy10545        462 FNNKTVEIIT-PTS----IRI--NNKK--IINANCIIDGRGLKNSQ---FD----GIYQIFLGQQWNL-SSPHGLDIPII  524 (1428)
Q Consensus       462 ~~~~~v~~i~-~~~----v~l--~~g~--~~~a~lvI~AdG~~S~~---~~----~~~q~~~g~~~~~-~~~~~~~~~~~  524 (1428)
                      +...+++++. .++    |++  .+|+  +++|++||+|||.+|.-   ..    .....+.++.+.. ..+..+...+ 
T Consensus       165 i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-  243 (514)
T PLN02985        165 LEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHL-  243 (514)
T ss_pred             EEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceE-
Confidence            3344565553 222    444  3564  36799999999999861   11    1122223332211 1111111111 


Q ss_pred             EecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHH-HHcCCcccee-----ee-eeeeeeccc
Q psy10545        525 MDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYA-IKNRWKLKNI-----ER-EEIGSIPIA  596 (1428)
Q Consensus       525 ~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~-----~~-~~~~~~Pl~  596 (1428)
                       .++   .   ..++.+.|.+++...+........ +..+..+++..+.+.. ...+-.+.+.     .. ......|..
T Consensus       244 -~~~---~---~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~  316 (514)
T PLN02985        244 -IMS---K---PSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTK  316 (514)
T ss_pred             -EcC---C---CceEEEEEeCCCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcc
Confidence             111   1   123455677666655433332221 1112223222222210 0000000000     00 011223333


Q ss_pred             CCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHhHHHHHHHH
Q psy10545        597 LKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQKKQRFFCML  672 (1428)
Q Consensus       597 ~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  672 (1428)
                      .........+|++++|||||.+||++|||++.|...|..|++.+....+. +...+.+.+++|++.|+.+......+
T Consensus       317 ~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~l  393 (514)
T PLN02985        317 RMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTL  393 (514)
T ss_pred             cccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHH
Confidence            22222223478999999999999999999776666665555555432222 22345566777777776655544333

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.77  E-value=1.6e-17  Score=209.06  Aligned_cols=327  Identities=11%  Similarity=0.023  Sum_probs=166.9

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.+++|+|+||+|+++|+.|+++|++|+|||+++.+           .....+.++.+....                  
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~-----------~~~~ra~~l~~~~~~------------------   60 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL-----------YDLPRAVGIDDEALR------------------   60 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-----------CCCCceeeeCHHHHH------------------
Confidence            468999999999999999999999999999998765           111223344332211                  


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCC-Ccccccc-cceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPK-FNRKIFS-GYYSICSKHLNSYLIRALGIN-N-FLFNNK  465 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~  465 (1428)
                         .+..+++++ .+.+ ...+...+....+.+ ....++. ....... ..+.+.+..+++.|.+.+.+. | .++.++
T Consensus        61 ---~L~~lGl~~-~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~  135 (538)
T PRK06183         61 ---VLQAIGLAD-EVLP-HTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGH  135 (538)
T ss_pred             ---HHHHcCChh-HHHh-hcccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCC
Confidence               111122222 1110 011111121111111 1122221 0001111 235688999999999998764 5 688899


Q ss_pred             eEEEEeCCe----EEEc--CC--cEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecc
Q psy10545        466 TVEIITPTS----IRIN--NK--KIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDAT  528 (1428)
Q Consensus       466 ~v~~i~~~~----v~l~--~g--~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~  528 (1428)
                      +|+++++++    |++.  +|  .+++|++||+|||.+|..   +.      .+.+.++.+.+..+.+........+.+.
T Consensus       136 ~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (538)
T PRK06183        136 EVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCD  215 (538)
T ss_pred             EEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEEC
Confidence            999997542    4554  45  479999999999999862   11      1233444434322211111111111111


Q ss_pred             cCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCc
Q psy10545        529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKT  608 (1428)
Q Consensus       529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv  608 (1428)
                          +.+.  +.++|++++...+.......... ....-.+.+.+++..++.....+.......+++....+.....+||
T Consensus       216 ----~~~~--~~~~p~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv  288 (538)
T PRK06183        216 ----PARP--YTSVRLPHGRRRWEFMLLPGETE-EQLASPENVWRLLAPWGPTPDDAELIRHAVYTFHARVADRWRSGRV  288 (538)
T ss_pred             ----CCCC--EEEEEcCCCeEEEEEEeCCCCCh-hhcCCHHHHHHHHHhhCCCCcceEEEEEEeeeEccEEhhhhccCCE
Confidence                1122  33467766654443333221110 0000112333343333322222211223455555554555566999


Q ss_pred             ccccccccccccCCCCChHHHHHHHHHHHhhcc---cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcc
Q psy10545        609 ICVGLRANLLHATTGYSLPIAIQLAENIAKYSI---TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSN  680 (1428)
Q Consensus       609 ~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~  680 (1428)
                      +|+|||||.++|++|||++.+++.|..|+..+.   ++.  ....+++.|++ +.............+.+++....
T Consensus       289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~--~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~  362 (538)
T PRK06183        289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR--AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTD  362 (538)
T ss_pred             EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence            999999999999999997755555544444332   222  22334444433 22222233334444555555444

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.77  E-value=1.4e-17  Score=201.75  Aligned_cols=286  Identities=11%  Similarity=0.029  Sum_probs=148.3

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+||+|+++|+.|+++|++|+|+|+++....         ...++++.+.+..+                    
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~---------~~~~~a~~l~~~~~--------------------   53 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYV---------EGRIRAGVLEQGTV--------------------   53 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccc---------ccccceeEECHhHH--------------------
Confidence            5789999999999999999999999999999874300         01122223333211                    


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                       ..++.|++|+ .+.. ...+...+..+.-.. ..+.++.  ........++.+..+.+.|.+.+.+.| .++.+++|++
T Consensus        54 -~~l~~lGl~~-~l~~-~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~  128 (392)
T PRK08243         54 -DLLREAGVGE-RMDR-EGLVHDGIELRFDGRRHRIDLTE--LTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVA  128 (392)
T ss_pred             -HHHHHcCChH-HHHh-cCCccCcEEEEECCEEEEecccc--ccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEE
Confidence             1222333333 1211 111222222211111 1222221  111123455678899999998887777 7888899988


Q ss_pred             EeC-Ce----EEE-cCCc--EEEeeEEEecCCCCCCCCC---cc----eEEE--EEEE-EEecCCcCCCCceEEecccCC
Q psy10545        470 ITP-TS----IRI-NNKK--IINANCIIDGRGLKNSQFD---GI----YQIF--LGQQ-WNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       470 i~~-~~----v~l-~~g~--~~~a~lvI~AdG~~S~~~~---~~----~q~~--~g~~-~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      ++. +.    |++ .+|+  +++||+||+|||.+|....   ..    .+..  .++. +..+.+... ...++. .   
T Consensus       129 i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---  203 (392)
T PRK08243        129 LHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVS-DELIYA-N---  203 (392)
T ss_pred             EEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCC-CceEEe-e---
Confidence            864 22    566 3664  6999999999999987211   00    0000  1100 001111111 111111 0   


Q ss_pred             CCCcceEEEEeeCCCCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccce-eee---eeeeeecccCCchhhhhc
Q psy10545        532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKN-IER---EEIGSIPIALKNEKIIKF  605 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-~~~---~~~~~~Pl~~~~~~~~~~  605 (1428)
                        .+..|+++.|.+++...+........  ...+.+.+.+.+.+.+   +...+. +..   .....+|+..........
T Consensus       204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (392)
T PRK08243        204 --HERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRL---PPEDAERLVTGPSIEKSIAPLRSFVAEPMQY  278 (392)
T ss_pred             --CCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhc---CcccccccccCccccccceeeeeceecccee
Confidence              11234444554444333222111111  1123344444444443   221111 110   112345666555444456


Q ss_pred             cCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      +|++|||||||.++|++|||++.++..|..|+..+.
T Consensus       279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~  314 (392)
T PRK08243        279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALV  314 (392)
T ss_pred             CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHH
Confidence            899999999999999999998765555555554443

>PRK07190 hypothetical protein; Provisional

Probab=99.77  E-value=2.4e-17  Score=202.85  Aligned_cols=296  Identities=11%  Similarity=0.068  Sum_probs=166.5

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      ...|++|+|+||+|+++|+.|+++|++|+|||+.+.+           .....+-++.+..+.                 
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~-----------~~~gra~~l~~~tle-----------------   55 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP-----------LEVGRADALNARTLQ-----------------   55 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc-----------cccccceEeCHHHHH-----------------
Confidence            3468999999999999999999999999999998765           111223344443321                 


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEE-----cCCCcccccccceeeechHHHHHHHHHhccCC-eEEe
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVK-----FPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFN  463 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~  463 (1428)
                          .+..+++|+ .+.+ ...++.....+.-.. .+.     ++.........++++.+..+++.|.+++.+.| .++.
T Consensus        56 ----~L~~lGl~~-~l~~-~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~  128 (487)
T PRK07190         56 ----LLELVDLFD-ELYP-LGKPCNTSSVWANGK-FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKR  128 (487)
T ss_pred             ----HHHhcChHH-HHHh-hCccceeEEEecCCc-eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEe
Confidence                111122222 1100 001111111111000 010     10000011123467889999999999998878 6888


Q ss_pred             cceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC--C-C----C--cceEEEEEEEEEecC--CcCCCCceEEecc
Q psy10545        464 NKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS--Q-F----D--GIYQIFLGQQWNLSS--PHGLDIPIIMDAT  528 (1428)
Q Consensus       464 ~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~--~-~----~--~~~q~~~g~~~~~~~--~~~~~~~~~~~~~  528 (1428)
                      +++|++++.+  .  +++.+|.+++|++||+|||.+|.  . .    .  .+......+.+.++.  |+... ...  +.
T Consensus       129 ~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~--~~  205 (487)
T PRK07190        129 NTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIV--FQ  205 (487)
T ss_pred             CCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEE--EE
Confidence            9999998743  2  45667889999999999999985  1 1    1  111222333333332  32111 111  11


Q ss_pred             cCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh-cc
Q psy10545        529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK-FK  606 (1428)
Q Consensus       529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~-~~  606 (1428)
                         .+.|  .+.++|++++...+... . .......+++.+.+.+.+.  +..+ .+... -...||+....+.++. .+
T Consensus       206 ---~~~g--~~~~~p~~~~~~r~~~~-~-~~~~~t~~~~~~~l~~~~~--~~~~-~~~~~~w~s~~~~~~r~a~~~r~~g  275 (487)
T PRK07190        206 ---AETS--DVAWIPREGEIDRFYVR-M-DTKDFTLEQAIAKINHAMQ--PHRL-GFKEIVWFSQFSVKESVAEHFFIQD  275 (487)
T ss_pred             ---cCCC--CEEEEECCCCEEEEEEE-c-CCCCCCHHHHHHHHHHhcC--CCCC-ceEEEEEEEEeeeCcEehhhcCcCC
Confidence               1122  24457886653221111 1 2223355666666655431  2222 22222 2467899998888765 69


Q ss_pred             CcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHH
Q psy10545        607 KTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVK  656 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~  656 (1428)
                      ||+|+|||||..+|.+|||+|    ||..|+..|+..+. +  .....+++.|+
T Consensus       276 RV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~-g--~a~~~lLdtY~  326 (487)
T PRK07190        276 RIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIH-H--GASPELLQSYE  326 (487)
T ss_pred             cEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHc-C--CCcHHHHHHHH
Confidence            999999999999999999977    55566666654433 2  22344444443

>PTZ00367 squalene epoxidase; Provisional

Probab=99.77  E-value=2.4e-17  Score=203.83  Aligned_cols=324  Identities=15%  Similarity=0.094  Sum_probs=167.4

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|+||+|+|++|+++|++|+++|++|+|+|+.+.. .++         ..+|..|++....                 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~-~~~---------r~~G~~L~p~g~~-----------------   84 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFS-KPD---------RIVGELLQPGGVN-----------------   84 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccc-ccc---------hhhhhhcCHHHHH-----------------
Confidence            3578999999999999999999999999999987521 011         1233344443221                 


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHh---ccCCeEEecce
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRAL---GINNFLFNNKT  466 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~~~~~~~~  466 (1428)
                          .+..|++|+ .+. ....++..+.+++..+..+..+-   .....++.+++.+|.+.|.+++   ...|+.+...+
T Consensus        85 ----~L~~LGL~d-~l~-~i~~~~~~~~v~~~~G~~~~i~~---~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~  155 (567)
T PTZ00367         85 ----ALKELGMEE-CAE-GIGMPCFGYVVFDHKGKQVKLPY---GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGT  155 (567)
T ss_pred             ----HHHHCCChh-hHh-hcCcceeeeEEEECCCCEEEecC---CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeE
Confidence                222344443 221 12223333333322121221111   1123567789999999999887   33453223456


Q ss_pred             EEEEeCC---------eEEE--cC-----------------------CcEEEeeEEEecCCCCCCC---C------Ccce
Q psy10545        467 VEIITPT---------SIRI--NN-----------------------KKIINANCIIDGRGLKNSQ---F------DGIY  503 (1428)
Q Consensus       467 v~~i~~~---------~v~l--~~-----------------------g~~~~a~lvI~AdG~~S~~---~------~~~~  503 (1428)
                      |+++..+         +|++  .+                       |.+++|++||+|||.+|.-   .      ..+.
T Consensus       156 v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~  235 (567)
T PTZ00367        156 VNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENH  235 (567)
T ss_pred             EEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcc
Confidence            7766311         2433  22                       5689999999999999871   1      1355


Q ss_pred             EEEEEEEEE-ecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHH-cC--
Q psy10545        504 QIFLGQQWN-LSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK-NR--  579 (1428)
Q Consensus       504 q~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--  579 (1428)
                      +.+.|..+. .+.|+.....++  ++.    +  +.++++|++++...+.......... +.++..+.+.+.... ..  
T Consensus       236 s~~~g~~~~~~~lp~~~~~~v~--~g~----~--gpi~~yPl~~~~~r~lv~~~~~~~p-~~~~~~~~l~~~~~p~l~~~  306 (567)
T PTZ00367        236 SHFVGLVLKNVRLPKEQHGTVF--LGK----T--GPILSYRLDDNELRVLVDYNKPTLP-SLEEQSEWLIEDVAPHLPEN  306 (567)
T ss_pred             eEEEEEEEecccCCCCCeeEEE--EcC----C--ceEEEEEcCCCeEEEEEEecCCcCC-ChHHHHHHHHHhhcccCcHH
Confidence            777776653 233332222221  121    1  3467889988866543332222111 111222222211100 00  


Q ss_pred             --Cccceeee--eeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc-----CCCCCh-h
Q psy10545        580 --WKLKNIER--EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-----TNQINS-T  649 (1428)
Q Consensus       580 --~~~~~~~~--~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~-----~~~~~~-~  649 (1428)
                        -.+.+.+.  ......|+....+.....+|++|||||||.+||++|||++.+.+.|..|++.+..     +.+.+. .
T Consensus       307 l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~  386 (567)
T PTZ00367        307 MRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMA  386 (567)
T ss_pred             HHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHH
Confidence              00000000  0112234433323323558999999999999999999976544444444444331     123332 2


Q ss_pred             HHHHHHH----HHHHHHHhHHH----HHHHHHHHhhh
Q psy10545        650 VLFKLVK----KFIINHQKKQR----FFCMLNRLFFL  678 (1428)
Q Consensus       650 ~~~~~~~----~~~~~~~~~~~----~~~~l~~~f~~  678 (1428)
                      .+.+.++    +|++.|+....    ..+.+.++|+.
T Consensus       387 ~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~  423 (567)
T PTZ00367        387 EIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS  423 (567)
T ss_pred             HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence            2334444    66555554444    33445555555

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.76  E-value=1.4e-17  Score=202.17  Aligned_cols=285  Identities=15%  Similarity=0.096  Sum_probs=152.4

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      .++|+|+|++|+++|++|+++|++|+|+|+.+..             ...|.|+...+.....                 
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~-------------~~~g~gi~l~~~~~~~-----------------   53 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL-------------SEVGAGLQLAPNAMRH-----------------   53 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-------------CcCCccceeChhHHHH-----------------
Confidence            4689999999999999999999999999998754             1234444333222222                 


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEc--CCC---cccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKF--PKF---NRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK  465 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~  465 (1428)
                        +..|++|+ .+.... .+...+...++......+  +..   ......++..++|.+|.+.|.+++.+. + .++.++
T Consensus        54 --L~~~Gl~~-~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~  129 (400)
T PRK06475         54 --LERLGVAD-RLSGTG-VTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGA  129 (400)
T ss_pred             --HHHCCChH-HHhhcc-cCcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECC
Confidence              22233332 111101 111122222221111111  110   011123566799999999999998664 5 578899


Q ss_pred             eEEEEeCCe----EEE---cCCcEEEeeEEEecCCCCCCC---CC----cc-eEEEEEEEEEecC-CcCC------CCce
Q psy10545        466 TVEIITPTS----IRI---NNKKIINANCIIDGRGLKNSQ---FD----GI-YQIFLGQQWNLSS-PHGL------DIPI  523 (1428)
Q Consensus       466 ~v~~i~~~~----v~l---~~g~~~~a~lvI~AdG~~S~~---~~----~~-~q~~~g~~~~~~~-~~~~------~~~~  523 (1428)
                      +|+++..+.    +++   .++++++||+||+|||.+|..   ..    .| .+.++...+..+. +...      ....
T Consensus       130 ~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (400)
T PRK06475        130 EMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAV  209 (400)
T ss_pred             EEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCce
Confidence            999986532    444   234579999999999999862   11    11 2333333332221 1100      0000


Q ss_pred             EEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-------CCCCHHHHHHHHHHHHHHcCCccceee--eeeeeeec
Q psy10545        524 IMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-------PFLKIDMLKKSIKDYAIKNRWKLKNIE--REEIGSIP  594 (1428)
Q Consensus       524 ~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~P  594 (1428)
                      ...++   . +  ..+..+|++++............       ...+.+.+    .+.+..+...+..++  ......+|
T Consensus       210 ~~~~g---~-~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~i~~~~~~~~~~  279 (400)
T PRK06475        210 SAWLG---N-K--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHL----KSIYADWNKPVLQILAAIDEWTYWP  279 (400)
T ss_pred             EEEEc---C-C--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHH----HHHhcCCChHHHHHHhcCCceeECc
Confidence            11111   0 1  23446788765432211111100       01122333    333322222222221  11234677


Q ss_pred             ccCCchhhhh-ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        595 IALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       595 l~~~~~~~~~-~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      +......... .+|++|||||||.+||.+|||++.+++.|..|++++.
T Consensus       280 l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~  327 (400)
T PRK06475        280 LFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALD  327 (400)
T ss_pred             CcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHh
Confidence            7655443332 4799999999999999999998877777777777664

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=1.6e-17  Score=193.87  Aligned_cols=429  Identities=16%  Similarity=0.146  Sum_probs=230.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCCc-hHHHHHHHHhcccccccce
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITDP-NSIKLLFDLSKNRMENYVN  789 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~~l~  789 (1428)
                      ++|+|+|||+|||+||++|+++|++|+|+|+++++||++.|.+. +|...|.|.|.|.++ ..+..++++++.+  +.+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~--~~~~   78 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE--DRLQ   78 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch--heee
Confidence            47999999999999999999999999999999999999999986 688999999999763 3445666776643  2222


Q ss_pred             EEecCCce-EEEeCCCcE--EEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        790 LLPIKPFY-RLYWGKEKF--LNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       790 ~~~~~~~~-~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                      ++.....+ ..--..|..  +..+..+            ........++..-................... .   ....
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~p------------~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-g---~~~~  142 (485)
T COG3349          79 LREHTKTFVGSGTRPGAIGRFARPDAP------------QPTNGLKAFLRLPQLPRREKIRFVLRLGDAPI-G---ADRS  142 (485)
T ss_pred             hHhhhhhhcccCCCCCcccccccCCCC------------CcchhhhhhhhccccCHHHHhHHhhccccccc-h---hHHH
Confidence            21111100 000011111  1111100            00001111110000000000000000000000 0   0111


Q ss_pred             HHhhcccCCHHHHHHhhcCC-HHHHHHHHhhcccc-cCCCCchhH--HHHHHH---Hhccccc-eeeecCch-HHHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKN-DYLKQAFSFNSLFI-GGNPFSTSS--IYTLIH---ALEYEWG-IWFPKGGV-GALIKAL  937 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~-~~l~~~l~~~~~~~-g~~p~~~s~--~~~~~~---~~~~~~g-~~~~~gG~-~~l~~~L  937 (1428)
                      ...+ +..|..+|+.+.... ...++.+....... ...|+..++  ...++.   ....... .....|++ ..++..+
T Consensus       143 ~~el-d~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~  221 (485)
T COG3349         143 LREL-DKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPW  221 (485)
T ss_pred             HHHH-hcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehh
Confidence            1122 478999999986543 44455554332221 234555554  112221   1221111 22345554 4567889


Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeC----CeEEEEEecCCc---EEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhc
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNN----NKVNKVHLKNGQ---IFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~----~~v~~V~~~~G~---~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~ 1010 (1428)
                      .+++++.|.+++++.+|++|+.+.    .+++++.+. +.   ...++.|+.+.+...... .++....+....+.+..+
T Consensus       222 ~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~-~~ps~W~~~~~f~~ly~l  299 (485)
T COG3349         222 TEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKR-DLPSEWPKWSNFDGLYGL  299 (485)
T ss_pred             hhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhh-cCcccccccccccccccc
Confidence            999999999999999999999865    346777665 43   345667777776665544 555544333333455555


Q ss_pred             CCCCceEEEEEeecCCcCCC--cceEEEcCCChHHHHHHHhcCCCCC--CCceEEEEeCCCCCCCCCCCCcc-EE-EEEE
Q psy10545       1011 KMSNSLFVIYFGLSEQYTHL--AHHTIFFPSNYKKSIENIFGKNFSR--DNLSIYLHSPSVTDLSLAPTGCS-TF-YALI 1084 (1428)
Q Consensus      1011 ~~~~s~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~s~~d~s~ap~G~~-~l-~v~~ 1084 (1428)
                      ..- +..++++.++......  ..+..++        +    +..+.  +....+...+...+ ..+-+|.. .+ .+..
T Consensus       300 ~~~-p~~~~~l~~~~~~~~~~~~~~~~~~--------d----n~~~s~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~  365 (485)
T COG3349         300 RLV-PVITLHLRFDGWVTELTDRNQQFGI--------D----NLLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLA  365 (485)
T ss_pred             ccc-ceeEEEEeecCccccccccchhhhh--------h----ccccccccCCceeeeccccch-hhccccchhhhhhhhc
Confidence            544 6789999998762111  1110011        0    00011  11112222222111 22222221 11 1111


Q ss_pred             ecCCCCCCCCCcH-HHHHHHHHHHHHHHHhccCCCccCce-EEEEecCcccHHHHhCCCCCcccccccccccccccCCCC
Q psy10545       1085 PVPNLSNSSINWS-EESIKLKNIVFMYLEQYCIPNLRKKL-ITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHN 1162 (1428)
Q Consensus      1085 ~~p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~l~~~i-~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~ 1162 (1428)
                        |     ...|. ...+++.....+.+.. ++|...+.- ....+.++.           +++...++..+   .||..
T Consensus       366 --~-----~~~~~~~~~~~~~a~~e~~~~~-~vP~~~~a~~~~~~i~~~q-----------~~~~~~pgs~~---~rP~~  423 (485)
T COG3349         366 --P-----GWPFLFESDEAIVATFEKELYE-LVPSLAEAKLKSSVLVNQQ-----------SLYGLAPGSYH---YRPEQ  423 (485)
T ss_pred             --c-----cccccccchhhHHHHHHHHhhh-cCCchhcccccccceeccc-----------cccccCCCccc---cCCCC
Confidence              1     11232 2446677778888886 888765322 222333332           34555555443   68999


Q ss_pred             CCCCCCceEEecCCccC--CCCcccccccccccccccc
Q psy10545       1163 RDKNLTNLYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1163 ~t~~i~~Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .|| ++|++++||++..  -..||+|..||+.+|..|.
T Consensus       424 ~Tp-v~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~  460 (485)
T COG3349         424 KTP-IPNLLLAGDYTKQPYLGSMEGATLSGLLAANAIL  460 (485)
T ss_pred             CCC-ccchhhccceeecCCcCccchhhhhHHHHHHHHH
Confidence            998 9999999999853  2379999999999998876

>PRK06753 hypothetical protein; Provisional

Probab=99.76  E-value=4.1e-17  Score=196.85  Aligned_cols=284  Identities=14%  Similarity=0.033  Sum_probs=151.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+||+|+++|+.|+++|++|+|+|+++.+           +  ..|.|+..........                
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-----------~--~~g~gi~l~~~~~~~L----------------   52 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV-----------K--EVGAGIGIGDNVIKKL----------------   52 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-----------c--ccccceeeChHHHHHH----------------
Confidence            4679999999999999999999999999999865           1  1233332222221211                


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEEeC
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITP  472 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~~  472 (1428)
                         ..|++|+ .+.. ...++..+...+..+..+...  .......++.|+|..|++.|.+.+... .++.+++|++++.
T Consensus        53 ---~~~gl~~-~~~~-~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~R~~l~~~L~~~~~~~-~i~~~~~v~~i~~  124 (373)
T PRK06753         53 ---GNHDLAK-GIKN-AGQILSTMNLLDDKGTLLNKV--KLKSNTLNVTLHRQTLIDIIKSYVKED-AIFTGKEVTKIEN  124 (373)
T ss_pred             ---HhcChHH-HHHh-cCCcccceeEEcCCCCEEeec--ccccCCccccccHHHHHHHHHHhCCCc-eEEECCEEEEEEe
Confidence               1122221 1100 011122222221111111100  011224568899999999999988643 5788999999964


Q ss_pred             Ce----EEEcCCcEEEeeEEEecCCCCCCC---CC-c-----ceEEEEEEEEEe-cCCcCCCCceEEecccCCCCCcceE
Q psy10545        473 TS----IRINNKKIINANCIIDGRGLKNSQ---FD-G-----IYQIFLGQQWNL-SSPHGLDIPIIMDATVNQKNDEYHF  538 (1428)
Q Consensus       473 ~~----v~l~~g~~~~a~lvI~AdG~~S~~---~~-~-----~~q~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~f  538 (1428)
                      ++    |++.+|.++++++||+|||.+|..   .. .     ....++...+.. ..+.......  .+.      .-++
T Consensus       125 ~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~------~~g~  196 (373)
T PRK06753        125 ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKE--YWG------TKGR  196 (373)
T ss_pred             cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEE--EEc------CCCE
Confidence            32    677788899999999999999761   11 1     111222111111 1111111111  111      1124


Q ss_pred             EEEeeCCCCceEEEeEEeccCCC-CCHHHHHHHHHHHHHHcCCccceeeee--ee--eeecccC-CchhhhhccCccccc
Q psy10545        539 IYTLPLTPNSLMIEDTRYTKKPF-LKIDMLKKSIKDYAIKNRWKLKNIERE--EI--GSIPIAL-KNEKIIKFKKTICVG  612 (1428)
Q Consensus       539 ~~~lPl~~~~~~v~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~--~~~Pl~~-~~~~~~~~~rv~lvG  612 (1428)
                      ++++|+.++...+.......... .....-.+.+.+++..+...+.++...  +.  ...++.. ........+|+++||
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiG  276 (373)
T PRK06753        197 FGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLG  276 (373)
T ss_pred             EEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEe
Confidence            67789888765544333221110 000011123333332222222222110  00  1111111 111223458999999


Q ss_pred             ccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        613 LRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       613 dAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ||||.++|.+|||++.++..|..|++++.
T Consensus       277 DAAh~~~P~~GqG~n~ai~Da~~L~~~L~  305 (373)
T PRK06753        277 DAAHATTPNMGQGAGQAMEDAIVLANCLN  305 (373)
T ss_pred             cccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence            99999999999999988888888887764

>PRK05868 hypothetical protein; Validated

Probab=99.75  E-value=6.1e-17  Score=193.89  Aligned_cols=288  Identities=13%  Similarity=0.042  Sum_probs=150.2

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+|++|+++|+.|+++|++|+|+|+++.+             ..+|.|+.....+.+.                 
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~-------------~~~g~~i~~~~~a~~~-----------------   52 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL-------------RPGGQAIDVRGPALDV-----------------   52 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-------------CCCceeeeeCchHHHH-----------------
Confidence            5789999999999999999999999999998765             1223333222222111                 


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCC----cccccccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF----NRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                        +..+++|+ .+. ....++..+...+..+..+.....    ........+.+.|.+|.+.|.+.+. .| .++.+++|
T Consensus        53 --L~~lGl~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~v~i~~~~~v  127 (372)
T PRK05868         53 --LERMGLLA-AAQ-EHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PSVEYLFDDSI  127 (372)
T ss_pred             --HHhcCCHH-HHH-hhccCccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CCcEEEeCCEE
Confidence              11122222 110 011122222222111111111110    0111233567889999998876553 45 58889999


Q ss_pred             EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCCCC---c-c--eEEEEEE---EEEecCCcCCCCceEEecccCCCCC
Q psy10545        468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQFD---G-I--YQIFLGQ---QWNLSSPHGLDIPIIMDATVNQKND  534 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~~~---~-~--~q~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1428)
                      ++++.+  .  |++.||.+++||+||+|||.+|....   . .  .....+.   .+.+...........+..+     .
T Consensus       128 ~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g-----~  202 (372)
T PRK05868        128 STLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYG-----D  202 (372)
T ss_pred             EEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEec-----C
Confidence            998643  2  67789999999999999999987211   1 0  0111111   1112211111111111111     1


Q ss_pred             cceEEEEeeCCCC-ceEEEeEEeccC---CCCCHHHHHHHHHHHHHHcCCccceee---e-eeeeeec-ccCCchhhhhc
Q psy10545        535 EYHFIYTLPLTPN-SLMIEDTRYTKK---PFLKIDMLKKSIKDYAIKNRWKLKNIE---R-EEIGSIP-IALKNEKIIKF  605 (1428)
Q Consensus       535 g~~f~~~lPl~~~-~~~v~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~P-l~~~~~~~~~~  605 (1428)
                      +. ++.+.|..++ ..+.........   .....+...+.+.+.+...+|...++.   . .....++ +........+.
T Consensus       203 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~  281 (372)
T PRK05868        203 ST-MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSR  281 (372)
T ss_pred             Cc-EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCC
Confidence            11 2334455543 323222211111   001123344555555544455533321   1 1112233 22222223355


Q ss_pred             cCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      +||+|+|||||.++|++|||.+.|++.|..|++++.
T Consensus       282 grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~  317 (372)
T PRK05868        282 GRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELK  317 (372)
T ss_pred             CCeeeeecccccCCCccCccHHHHHHHHHHHHHHHH
Confidence            899999999999999999998877777777776664

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.75  E-value=2.8e-17  Score=200.08  Aligned_cols=325  Identities=14%  Similarity=0.121  Sum_probs=178.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .+|+||+|+||+|+++|+.||++|++|+|||+.+.+           +.++||+|.......   ....|+...      
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~-----------g~k~~~gg~l~~~~~---e~l~~~~~~------   64 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA-----------GAKNVTGGRLYAHSL---EHIIPGFAD------   64 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC-----------CCcccccceechhhH---HHHhhhhhh------
Confidence            469999999999999999999999999999999877           777777776543222   111222000      


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccc-----c--CccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCC-eE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYS-----W--PSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINN-FL  461 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~  461 (1428)
                                         ..|++..+.++     +  ....+.+.... .......|+|.|..|++.|.+++.+.| .+
T Consensus        65 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i  125 (428)
T PRK10157         65 -------------------SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL  125 (428)
T ss_pred             -------------------cCcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE
Confidence                               00011000000     0  01112222111 112235788999999999999998888 78


Q ss_pred             EecceEEEEeC--CeE--EEcCCcEEEeeEEEecCCCCCC---C--CC---cceEEEEEEEEEecCCcC----------C
Q psy10545        462 FNNKTVEIITP--TSI--RINNKKIINANCIIDGRGLKNS---Q--FD---GIYQIFLGQQWNLSSPHG----------L  519 (1428)
Q Consensus       462 ~~~~~v~~i~~--~~v--~l~~g~~~~a~lvI~AdG~~S~---~--~~---~~~q~~~g~~~~~~~~~~----------~  519 (1428)
                      +.+++|+++..  +.+  ...+|.+++|++||+|||.+|.   .  ..   ...+.+++.+..++.|..          .
T Consensus       126 ~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~  205 (428)
T PRK10157        126 ITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGN  205 (428)
T ss_pred             ECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCC
Confidence            88899988753  232  3346778999999999999875   1  11   234555665544433311          0


Q ss_pred             CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC---CCCCHHHHHHHHHHHHH-HcCCccceeeeeeeeeecc
Q psy10545        520 DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK---PFLKIDMLKKSIKDYAI-KNRWKLKNIEREEIGSIPI  595 (1428)
Q Consensus       520 ~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~Pl  595 (1428)
                      ........+.+ .+.-++..|+.| ..+.++|+.......   .......+.+.+.+-.. ...+.-++......+.+|.
T Consensus       206 ~g~~~~~~g~~-~~g~~ggG~~~~-~~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~  283 (428)
T PRK10157        206 QGAACLFAGSP-TDGLMGGGFLYT-NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPE  283 (428)
T ss_pred             CCeEEEEEECC-CCCCcCceeEEE-cCCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhc
Confidence            11111111211 111122224445 356677766443221   11223333333321100 0001112233333456787


Q ss_pred             cCCc-hhhhhccCcccccccccccccC--CCCChHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHHHhHHHHH
Q psy10545        596 ALKN-EKIIKFKKTICVGLRANLLHAT--TGYSLPIAIQLAENIAKYSIT---TNQINSTVLFKLVKKFIINHQKKQRFF  669 (1428)
Q Consensus       596 ~~~~-~~~~~~~rv~lvGdAA~~vhP~--~G~G~~~a~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1428)
                      .... ......+++++|||||+.++|+  +|+|+..|+..+..+++++.+   ..+.+...+..|.+++.....+....+
T Consensus       284 ~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~  363 (428)
T PRK10157        284 AGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMY  363 (428)
T ss_pred             CCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHH
Confidence            6532 2223568999999999999984  999999888777777766543   233444444444433444332334434


Q ss_pred             HHHHHHh
Q psy10545        670 CMLNRLF  676 (1428)
Q Consensus       670 ~~l~~~f  676 (1428)
                      +-+..++
T Consensus       364 ~~~~~~~  370 (428)
T PRK10157        364 QKLPAFL  370 (428)
T ss_pred             hccHHHh
Confidence            3333333

>PRK06184 hypothetical protein; Provisional

Probab=99.75  E-value=3e-17  Score=205.03  Aligned_cols=284  Identities=13%  Similarity=0.069  Sum_probs=159.4

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+||+|+++|+.|+++|++|+|||+++.+           .....+.|+.+..+.  +                
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~-----------~~~~ra~~l~~~~~e--~----------------   54 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP-----------FPGSRGKGIQPRTQE--V----------------   54 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------CcCccceeecHHHHH--H----------------
Confidence            57899999999999999999999999999998766           233456666654332  1                


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCcc--EEEcCCC-c--cccc-ccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY--QVKFPKF-N--RKIF-SGYYSICSKHLNSYLIRALGINN-FLFNN  464 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~--~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~  464 (1428)
                         ++.|++|+ .+.. ...++..+..+.....  ...+... .  ...+ ...+++++..+++.|.+.+.+.| .++.+
T Consensus        55 ---l~~lGl~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~  129 (502)
T PRK06184         55 ---FDDLGVLD-RVVA-AGGLYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFG  129 (502)
T ss_pred             ---HHHcCcHH-HHHh-cCccccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeC
Confidence               11122221 0100 0011111111111110  0111000 0  0111 23567999999999999998777 68889


Q ss_pred             ceEEEEeCCe----EEE---cCCcEEEeeEEEecCCCCCCC---CC------cceE-EEEEEEEEecCCcCCCCceEEec
Q psy10545        465 KTVEIITPTS----IRI---NNKKIINANCIIDGRGLKNSQ---FD------GIYQ-IFLGQQWNLSSPHGLDIPIIMDA  527 (1428)
Q Consensus       465 ~~v~~i~~~~----v~l---~~g~~~~a~lvI~AdG~~S~~---~~------~~~q-~~~g~~~~~~~~~~~~~~~~~~~  527 (1428)
                      ++|++++.++    +++   .++.+++|++||+|||.+|..   +.      .+.+ ..+...+.+.....  .. ...+
T Consensus       130 ~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~  206 (502)
T PRK06184        130 CELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDR--DA-WHQW  206 (502)
T ss_pred             cEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCC--cc-eEEc
Confidence            9999987432    444   456689999999999999861   11      1222 33444433332211  11 1111


Q ss_pred             ccCCCCCcceEEEEeeCCCCceEEEeEEecc--CCCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh
Q psy10545        528 TVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK--KPFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK  604 (1428)
Q Consensus       528 ~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~  604 (1428)
                      ..  . . ..++.++|+.++..+........  ....+.+.+.+.+..++   +.....+... ....+++....+....
T Consensus       207 ~~--~-~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~  279 (502)
T PRK06184        207 PD--G-D-MGMIALCPLPGTDLFQIQAPLPPGGEPDLSADGLTALLAERT---GRTDIRLHSVTWASAFRMNARLADRYR  279 (502)
T ss_pred             cC--C-C-CcEEEEEEccCCCeEEEEEEcCCCccCCCCHHHHHHHHHHhc---CCCCcceeeeeeeeccccceeEhhhhc
Confidence            10  1 1 13455678765533221111111  12234566666665554   3222222211 2345666655555556


Q ss_pred             ccCcccccccccccccCCCCChH----HHHHHHHHHHhh
Q psy10545        605 FKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKY  639 (1428)
Q Consensus       605 ~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~  639 (1428)
                      .+||+|+|||||.++|.+|||++    ||..|+..|+..
T Consensus       280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~v  318 (502)
T PRK06184        280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAV  318 (502)
T ss_pred             CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHH
Confidence            69999999999999999999976    555555555544

>PRK07538 hypothetical protein; Provisional

Probab=99.72  E-value=1.6e-16  Score=193.82  Aligned_cols=291  Identities=15%  Similarity=0.099  Sum_probs=145.9

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+|++|+++|+.|+++|++|+|+|+++.+             .++|.|+...+.+.+...               
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-------------~~~g~gi~l~p~~~~~L~---------------   53 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL-------------RPLGVGINLLPHAVRELA---------------   53 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc-------------cccCcceeeCchHHHHHH---------------
Confidence            5789999999999999999999999999998755             134555543322222111               


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEE-cCCC-cccccccceeeechHHHHHHHHHhcc-CC--eEEecceE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVK-FPKF-NRKIFSGYYSICSKHLNSYLIRALGI-NN--FLFNNKTV  467 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~-~~--~~~~~~~v  467 (1428)
                          .|++|+. +.. ...+...+...+..+..+. .+.. ......+.+.|+|..|++.|.+++.+ .|  .++.+++|
T Consensus        54 ----~lgl~~~-l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v  127 (413)
T PRK07538         54 ----ELGLLDA-LDA-IGIRTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRV  127 (413)
T ss_pred             ----HCCCHHH-HHh-hCCCCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEE
Confidence                1122210 000 0011111111111111111 1110 11122345679999999999999865 35  48889999


Q ss_pred             EEEeCC--e--EEEcCC-----cEEEeeEEEecCCCCCCCCCcc-----eEEEEE---EEEEecCCcCCCCceEEecccC
Q psy10545        468 EIITPT--S--IRINNK-----KIINANCIIDGRGLKNSQFDGI-----YQIFLG---QQWNLSSPHGLDIPIIMDATVN  530 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g-----~~~~a~lvI~AdG~~S~~~~~~-----~q~~~g---~~~~~~~~~~~~~~~~~~~~~~  530 (1428)
                      ++++.+  .  +.+.++     .+++||+||+|||.+|......     .....|   +.-.+..+.......++..+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~  207 (413)
T PRK07538        128 VGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHL  207 (413)
T ss_pred             EEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCC
Confidence            998642  2  444433     4899999999999998621100     111111   1111121111111111111110


Q ss_pred             CCCCcceEEEEeeCCCC------ceEEEeEEeccC-------CCCCHHHHHHHHHHHHHHcCCc---cceeee--eeeee
Q psy10545        531 QKNDEYHFIYTLPLTPN------SLMIEDTRYTKK-------PFLKIDMLKKSIKDYAIKNRWK---LKNIER--EEIGS  592 (1428)
Q Consensus       531 ~~~~g~~f~~~lPl~~~------~~~v~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~---~~~~~~--~~~~~  592 (1428)
                         .+  .++++|+.++      ....+.......       .........+.+.+.+..+...   +.+++.  .....
T Consensus       208 ---~~--~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  282 (413)
T PRK07538        208 ---DG--KLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE  282 (413)
T ss_pred             ---CC--EEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceee
Confidence               11  2334455432      111111111111       0001111122222222211111   111111  12234


Q ss_pred             ecccCCc-hhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        593 IPIALKN-EKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       593 ~Pl~~~~-~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      +|+.... ......+|++|||||||.++|++|||++.|+..|..|++++..
T Consensus       283 ~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~  333 (413)
T PRK07538        283 YPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA  333 (413)
T ss_pred             ccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence            6765332 2223558999999999999999999988777777777777654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.71  E-value=5.8e-16  Score=196.00  Aligned_cols=322  Identities=8%  Similarity=0.039  Sum_probs=169.9

Q ss_pred             HHHHHHhcCCchHHHHHHHHhh-cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQT-AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~-~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +.+++|+|+||+|+++|+.|++ .|++|+|||+++.+.           ....+.|+++..+.  +              
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-----------~~grA~gl~prtle--i--------------   84 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-----------ELGQADGIACRTME--M--------------   84 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-----------CCCeeeEEChHHHH--H--------------
Confidence            4689999999999999999999 599999999987551           11234455554322  1              


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCc---cEEE----cCCCccc-ccccceeeechHHHHHHHHHhccCC--
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS---YQVK----FPKFNRK-IFSGYYSICSKHLNSYLIRALGINN--  459 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~--  459 (1428)
                           ++.|++|+ .+.. ...++..+..+....   ..+.    +...... ...++.++++..+.+.|.+.+.+.+  
T Consensus        85 -----L~~lGl~d-~l~~-~g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~  157 (634)
T PRK08294         85 -----FQAFGFAE-RILK-EAYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTR  157 (634)
T ss_pred             -----HHhccchH-HHHh-hcccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCc
Confidence                 12222222 1110 011111121111110   0000    0110111 1234567899999999999997654  


Q ss_pred             -eEEecceEEEEeCC-------eEEEc------CC--cEEEeeEEEecCCCCCCC---C----C--cceEEEEEEEEEec
Q psy10545        460 -FLFNNKTVEIITPT-------SIRIN------NK--KIINANCIIDGRGLKNSQ---F----D--GIYQIFLGQQWNLS  514 (1428)
Q Consensus       460 -~~~~~~~v~~i~~~-------~v~l~------~g--~~~~a~lvI~AdG~~S~~---~----~--~~~q~~~g~~~~~~  514 (1428)
                       .+..++++++++.+       .|++.      +|  .+++|++||||||.+|..   .    .  .+.+....+.+...
T Consensus       158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~  237 (634)
T PRK08294        158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV  237 (634)
T ss_pred             eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence             35778999988632       14553      34  479999999999999872   1    0  12233333333332


Q ss_pred             CCcCCCCc-eEEecccCCCCCcceEEEEeeCCCCc-eEEEeEEe--cc-----CCCCCHHHHHHHHHHHHHHcCCcccee
Q psy10545        515 SPHGLDIP-IIMDATVNQKNDEYHFIYTLPLTPNS-LMIEDTRY--TK-----KPFLKIDMLKKSIKDYAIKNRWKLKNI  585 (1428)
Q Consensus       515 ~~~~~~~~-~~~~~~~~~~~~g~~f~~~lPl~~~~-~~v~~~~~--~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~  585 (1428)
                      ..+..... ..+..    .++|  .+.++|+.++. ..+.....  ..     ....+.+++.+.+.+.+   +....++
T Consensus       238 ~~~p~~~~~~~~~~----~~~g--~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~---~p~~~~~  308 (634)
T PRK08294        238 TDFPDIRLKCAIQS----ASEG--SILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRIL---HPYTLDV  308 (634)
T ss_pred             cCCCCcceEEEEec----CCCc--eEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhc---CCCCCce
Confidence            22221111 11110    1122  34467887764 33322111  10     02234566666666554   2211122


Q ss_pred             eeee-eeeecccCCchhhh----------hccCcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhH
Q psy10545        586 EREE-IGSIPIALKNEKII----------KFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTV  650 (1428)
Q Consensus       586 ~~~~-~~~~Pl~~~~~~~~----------~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~  650 (1428)
                      .... ...+++....+..+          ..+||+|+|||||+.+|.+|||+|    ||..|+..|+..+. +  .....
T Consensus       309 ~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~-g--~a~~~  385 (634)
T PRK08294        309 KEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS-G--RSPPE  385 (634)
T ss_pred             eEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc-C--CCcHH
Confidence            2222 34677666655543          247999999999999999999976    55555556665442 2  22333


Q ss_pred             HHHHHHH-HHHHHHhHHHHHHHHHHHhhh
Q psy10545        651 LFKLVKK-FIINHQKKQRFFCMLNRLFFL  678 (1428)
Q Consensus       651 ~~~~~~~-~~~~~~~~~~~~~~l~~~f~~  678 (1428)
                      +++.|++ ++..-++...+.+.+.++|..
T Consensus       386 lL~tYe~ERrp~a~~li~~~~~~~~l~~~  414 (634)
T PRK08294        386 LLHTYSAERQAIAQELIDFDREWSTMMAA  414 (634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444433 222222223344445555544

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.70  E-value=9.4e-16  Score=165.99  Aligned_cols=271  Identities=14%  Similarity=0.076  Sum_probs=168.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE----eCCeEEcccccccCC--chHHHHHHHHhccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK----QDGFIFDAGPTVITD--PNSIKLLFDLSKNR  783 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~----~~G~~~d~G~~~i~~--~~~~~~l~~~lG~~  783 (1428)
                      .+.+|+|||+|++||+||+.|++. ++|+++|+++++||+++|..    .+|+.+|+|.++...  ...+..+|+.+|.+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~   85 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD   85 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence            457899999999999999999886 89999999999999999995    357789999998875  33467899999965


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecC--CHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHH
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYED--NIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDML  861 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (1428)
                      ..      .....+.+.+.+| .+.+..  .+..+.   .....-....+..++++.-+++...                
T Consensus        86 t~------as~Msf~v~~d~g-glEy~g~tgl~~L~---aqk~n~l~pRf~~mlaeiLrf~r~~----------------  139 (447)
T COG2907          86 TK------ASFMSFSVSLDMG-GLEYSGLTGLAGLL---AQKRNLLRPRFPCMLAEILRFYRSD----------------  139 (447)
T ss_pred             Cc------ccceeEEEEecCC-ceeeccCCCccchh---hccccccchhHHHHHHHHHHHhhhh----------------
Confidence            32      2222233333332 223222  111110   0000001112222222222222210                


Q ss_pred             HhhHHHHhhcccCCHHHHHHhhcCCHHHHH-HHHh-hcccccCCCCchhH--HHHHHHHhcccc-------c-eeeecCc
Q psy10545        862 FILPKLIKIKAWKSVYSIVSQFIKNDYLKQ-AFSF-NSLFIGGNPFSTSS--IYTLIHALEYEW-------G-IWFPKGG  929 (1428)
Q Consensus       862 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~l~~-~~~~~g~~p~~~s~--~~~~~~~~~~~~-------g-~~~~~gG  929 (1428)
                       ..+.-.......++.+|++++--...... ++.. ....++.+..+.+.  +..++.++...+       . +..+.||
T Consensus       140 -~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~gg  218 (447)
T COG2907         140 -LAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGG  218 (447)
T ss_pred             -ccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccc
Confidence             00111122347899999998755444433 3332 23344444334332  112223333221       1 2356799


Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhh
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIK 1009 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~ 1009 (1428)
                      +...++.|...+   +++|+++++|..|..-.++ +.|+..+|++-.+|.||.|+.+.+.+. |+.++  +++..+.+..
T Consensus       219 S~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth~dqAl~-mL~e~--sp~e~qll~a  291 (447)
T COG2907         219 SRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATHPDQALA-LLDEP--SPEERQLLGA  291 (447)
T ss_pred             hHHHHHHHhccc---cceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecChHHHHH-hcCCC--CHHHHHHHHh
Confidence            999999987765   4689999999999987766 345556798899999999999999987 66654  3345578999


Q ss_pred             cCCCCc
Q psy10545       1010 KKMSNS 1015 (1428)
Q Consensus      1010 ~~~~~s 1015 (1428)
                      +.|+..
T Consensus       292 ~~Ys~n  297 (447)
T COG2907         292 LRYSAN  297 (447)
T ss_pred             hhhhhc
Confidence            999853

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.70  E-value=5.3e-16  Score=195.79  Aligned_cols=289  Identities=13%  Similarity=0.078  Sum_probs=154.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      ...+++|+|+||+|+++|+.|++.|++|+|||+++...                                +..|...+..
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~--------------------------------~~~ra~~l~~   69 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS--------------------------------TGSRAICFAK   69 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC--------------------------------CCCeEEEEcH
Confidence            45689999999999999999999999999999987540                                0112222222


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc-cccc-ccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN-RKIF-SGYYSICSKHLNSYLIRALGIN-N-FLFNNK  465 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~  465 (1428)
                      .+...++.|++++ .+... ..++..............++... .... ..+..+.+..+++.|.+.+.+. + .++.++
T Consensus        70 ~~~~~l~~lGl~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~  147 (547)
T PRK08132         70 RSLEIFDRLGCGE-RMVDK-GVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKN  147 (547)
T ss_pred             HHHHHHHHcCCcH-HHHhh-CceeeceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCC
Confidence            2222222233332 11100 00001000000011111221100 1111 1245588999999999999765 4 678899


Q ss_pred             eEEEEeCC--e--EEEc--CCc-EEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEeccc
Q psy10545        466 TVEIITPT--S--IRIN--NKK-IINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATV  529 (1428)
Q Consensus       466 ~v~~i~~~--~--v~l~--~g~-~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~  529 (1428)
                      +|++++.+  .  +++.  +|. +++|++||+|||.+|..   +.      .+.+.++...+..+.+.......+  +..
T Consensus       148 ~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~--~~~  225 (547)
T PRK08132        148 KVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFW--FDP  225 (547)
T ss_pred             EEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEE--Eec
Confidence            99998743  2  3332  454 69999999999999761   11      122344444444443332222222  221


Q ss_pred             CCCCCcceEEEEeeCCCCceEEEeEE-eccC--CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhcc
Q psy10545        530 NQKNDEYHFIYTLPLTPNSLMIEDTR-YTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFK  606 (1428)
Q Consensus       530 ~~~~~g~~f~~~lPl~~~~~~v~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~  606 (1428)
                      ... .+ .++++.|.+++...+.... +...  .....+.+.+.+.+.+   +.. ..+...-...+++....+.+...+
T Consensus       226 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~a~~~~~g  299 (547)
T PRK08132        226 PFH-PG-QSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALL---GED-VPFELEWVSVYTFQCRRMDRFRHG  299 (547)
T ss_pred             cCC-CC-cEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHc---CCC-CCeeEEEEEeeeeeeeeecccccc
Confidence            111 12 2344455555433332211 1111  1123455555555554   311 122111234556665555555669


Q ss_pred             CcccccccccccccCCCCChH----HHHHHHHHHHhhc
Q psy10545        607 KTICVGLRANLLHATTGYSLP----IAIQLAENIAKYS  640 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~  640 (1428)
                      ||+|+|||||.++|.+|||+|    ||..|+..|+..+
T Consensus       300 RV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl  337 (547)
T PRK08132        300 RVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVL  337 (547)
T ss_pred             cEEEEecccccCCCcccccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999976    5555666555543

>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases

Probab=99.70  E-value=5.8e-17  Score=181.87  Aligned_cols=189  Identities=28%  Similarity=0.259  Sum_probs=153.0

Q ss_pred             hhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHH-----HcC
Q psy10545       1203 VIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKI-LRIKTKRACIGFKMKEPAFLALQKIIS-----IHS 1276 (1428)
Q Consensus      1203 ~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~p~~~~l~~~~~-----~~~ 1276 (1428)
                      +.+.++..||+|||..|||+|+.... +.+        .....+ |..... ...   .++++..++..+.+     .+.
T Consensus        22 ~~a~ave~l~~~~li~DDI~D~~~~r-rg~--------~~~~~~~~g~~~a-i~~---gd~l~~~a~~~l~~~~~~~~~~   88 (236)
T cd00867          22 RLAAAVELLHAASLVHDDIVDDSDLR-RGK--------PTAHLRRFGNALA-ILA---GDYLLARAFQLLARLGYPRALE   88 (236)
T ss_pred             HHHHHHHHHHHHHHHHcccccCCccC-CCC--------ccHhHHhhCHhHH-HHH---HHHHHHHHHHHHHhCChHHHHH
Confidence            78999999999999999999985321 111        123334 544332 222   35788888888877     678


Q ss_pred             CCHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-HhHHHHHHHHHhhCCCc------cchHHHHHHHHHHHHHHHHH
Q psy10545       1277 FPVHLLFEHLDGFEMDVMERT--YITLDETLGYCYH-VAGTIGLIIAHLIGVKE------KDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus      1277 l~~~~~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~-vag~vg~~~~~~~~~~~------~~~~~~a~~~g~a~q~~nil 1347 (1428)
                      ++.+.+.++++|+.+|+....  +.|++++++||++ ||+.+|.++..+.....      ....+.+.++|+|+|++|++
T Consensus        89 ~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~a~Qi~dd~  168 (236)
T cd00867          89 LFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGLAFQLTDDL  168 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999999998876  8999999999999 99999998887764332      24578999999999999999


Q ss_pred             hcchhhh----------cCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q psy10545       1348 RDVIDDF----------YVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLA 1417 (1428)
Q Consensus      1348 rd~~~d~----------~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a 1417 (1428)
                      ||+.+|.          ..||+|||.+++                      .+.+.+.+++++..+...+...|......
T Consensus       169 ~D~~~d~~~~gk~~~D~~~gr~tlp~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (236)
T cd00867         169 LDVFGDAEELGKVGSDLREGRITLPVILA----------------------RERAAEYAEEAYAALEALPPSLPRARRAL  226 (236)
T ss_pred             ccccCChHHHCccHHHHHcCCchHHHHHH----------------------HHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            9999988          899999999997                      55678888999999999988888777888


Q ss_pred             HHHHHHHhh
Q psy10545       1418 IVTSWSIYR 1426 (1428)
Q Consensus      1418 ~~~a~~~y~ 1426 (1428)
                      +..+..+|+
T Consensus       227 ~~~~~~~~~  235 (236)
T cd00867         227 IALADFLYR  235 (236)
T ss_pred             HHHHHHHHh
Confidence            888888875

Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.69  E-value=5e-16  Score=189.01  Aligned_cols=286  Identities=14%  Similarity=0.087  Sum_probs=150.1

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+++|+.|+++|++|+|+|+++.+           +  ..|.|+...+.+.+..               
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~-----------~--~~g~gi~l~~~~~~~l---------------   56 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI-----------G--EIGAGIQLGPNAFSAL---------------   56 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc-----------c--cccceeeeCchHHHHH---------------
Confidence            57899999999999999999999999999998765           1  2244443333332221               


Q ss_pred             CCCCceeeeccCCcCccccccccccccccc-Cc-cEEEcCCCc---ccccccceeeechHHHHHHHHHhccCC--eEEec
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSW-PS-YQVKFPKFN---RKIFSGYYSICSKHLNSYLIRALGINN--FLFNN  464 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~  464 (1428)
                          ..|++|+. +. ....+...+...+. .+ ....++...   .....++++|+|..|.+.|.+++.+.+  .++.+
T Consensus        57 ----~~lg~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~  130 (396)
T PRK08163         57 ----DALGVGEA-AR-QRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTS  130 (396)
T ss_pred             ----HHcCChHH-HH-hhccCCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeC
Confidence                11222220 00 00011111111111 01 111111111   112235678999999999999997654  57788


Q ss_pred             ceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C-Cc----ceEEEEEEEEEecCCcCC-C-CceEEecccC
Q psy10545        465 KTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ---F-DG----IYQIFLGQQWNLSSPHGL-D-IPIIMDATVN  530 (1428)
Q Consensus       465 ~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~-~~----~~q~~~g~~~~~~~~~~~-~-~~~~~~~~~~  530 (1428)
                      ++|+++..++    |++.+|.++.|++||+|||.+|..   . ..    ..+..+...+........ . ....+..+  
T Consensus       131 ~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g--  208 (396)
T PRK08163        131 THVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAG--  208 (396)
T ss_pred             CEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEc--
Confidence            9999887432    566788889999999999999762   1 10    112233333322211110 0 11111111  


Q ss_pred             CCCCcceEEEEeeCCCCc-eEEEeEEeccC------CCCCHHHHHHHHHHHHHHcCCccceeeee--eeeeecccCC-ch
Q psy10545        531 QKNDEYHFIYTLPLTPNS-LMIEDTRYTKK------PFLKIDMLKKSIKDYAIKNRWKLKNIERE--EIGSIPIALK-NE  600 (1428)
Q Consensus       531 ~~~~g~~f~~~lPl~~~~-~~v~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~Pl~~~-~~  600 (1428)
                          ...+++.+|+.++. .++..+.....      ...+.+.+.    +.+........+++..  ....+++... ..
T Consensus       209 ----~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (396)
T PRK08163        209 ----PHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVL----SYFEGIHPRPRQMLDKPTSWKRWATADREPV  280 (396)
T ss_pred             ----CCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHH----HHHcCCChHHHHHHhcCCceeEccccCCCcc
Confidence                11345667876554 22222211111      011223333    3222111111111110  0111112111 11


Q ss_pred             hhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        601 KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       601 ~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      .....+|++|+|||||.++|.+|||++.+++.|..|+.++.
T Consensus       281 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~  321 (396)
T PRK08163        281 AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALE  321 (396)
T ss_pred             cccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHH
Confidence            12244899999999999999999998877777777776664

>PRK06126 hypothetical protein; Provisional

Probab=99.67  E-value=8.3e-16  Score=194.32  Aligned_cols=286  Identities=13%  Similarity=0.093  Sum_probs=150.5

Q ss_pred             hHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        309 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       309 ~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      ..+.+++|+|+||+|+++|+.|+++|++|+|+|+++.+           ...+.+.++.+..+.  +             
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~-----------~~~~ra~~l~~r~~e--~-------------   58 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT-----------AFNPKANTTSARSME--H-------------   58 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------CCCCccccCCHHHHH--H-------------
Confidence            34568999999999999999999999999999988754           222234444443221  1             


Q ss_pred             cCCCCCCceeeeccCCcCcccccccc---cccccc-cCc---cEEEcCCCc------------ccccccceeeechHHHH
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIK---PLITYS-WPS---YQVKFPKFN------------RKIFSGYYSICSKHLNS  449 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~---~~~~~~-~~~---~~~~~~~~~------------~~~~~~~~~i~r~~l~~  449 (1428)
                            ++.|++++ .+... ..+..   ...... ..+   ..+.++...            ...+..++.+++..|++
T Consensus        59 ------L~~lGl~~-~l~~~-g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~  130 (545)
T PRK06126         59 ------FRRLGIAD-EVRSA-GLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEP  130 (545)
T ss_pred             ------HHhcChHH-HHHhh-cCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHH
Confidence                  11112211 00000 00000   000000 000   011111100            01123467899999999


Q ss_pred             HHHHHhccC-C-eEEecceEEEEeCC--e--EEE---cCCc--EEEeeEEEecCCCCCCC---CC------cceEEEEEE
Q psy10545        450 YLIRALGIN-N-FLFNNKTVEIITPT--S--IRI---NNKK--IINANCIIDGRGLKNSQ---FD------GIYQIFLGQ  509 (1428)
Q Consensus       450 ~L~~~~~~~-~-~~~~~~~v~~i~~~--~--v~l---~~g~--~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~  509 (1428)
                      .|.+.+.+. + .++.+++|++++.+  .  +++   .+|+  +++|++||+|||.+|..   +.      .+.+..+..
T Consensus       131 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~  210 (545)
T PRK06126        131 ILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSI  210 (545)
T ss_pred             HHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEE
Confidence            999999764 5 78889999998743  2  333   2353  69999999999999861   11      123333333


Q ss_pred             EEEecCC---cCCC-CceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc--CCCCCHHHHHHHHHHHHHHcCCccc
Q psy10545        510 QWNLSSP---HGLD-IPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK--KPFLKIDMLKKSIKDYAIKNRWKLK  583 (1428)
Q Consensus       510 ~~~~~~~---~~~~-~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~  583 (1428)
                      .++....   .... ....+....    ...  +.+.|...+..+........  ....+.+.+.+.+.+.+   +..+.
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~p----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  281 (545)
T PRK06126        211 YIRAPGLAALVGHDPAWMYWLFNP----DRR--GVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGV---GEDID  281 (545)
T ss_pred             EEEcCchHHHhcCCCceEEEEECC----Ccc--EEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhc---CCCCC
Confidence            3332110   1111 111111111    111  22344443333322211111  11223455555555543   42222


Q ss_pred             eeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HHHHHHHHHHh
Q psy10545        584 NIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAK  638 (1428)
Q Consensus       584 ~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~  638 (1428)
                       +.......+++....+..+..+||+|+|||||.++|+.|||+|    ||..|+..|+.
T Consensus       282 -~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~  339 (545)
T PRK06126        282 -YEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAA  339 (545)
T ss_pred             -eEEEeecccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHH
Confidence             1112223455555556655679999999999999999999976    55555555544

>PRK06847 hypothetical protein; Provisional

Probab=99.66  E-value=2.6e-15  Score=181.43  Aligned_cols=290  Identities=16%  Similarity=0.106  Sum_probs=155.4

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+++|+.|++.|++|+|+|+.+.+             ...|.|+.......+....             
T Consensus         5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~-------------~~~g~g~~l~~~~~~~l~~-------------   58 (375)
T PRK06847          5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW-------------RVYGAGITLQGNALRALRE-------------   58 (375)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC-------------ccCCceeeecHHHHHHHHH-------------
Confidence            46889999999999999999999999999998754             1234444333222111111             


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCccc-c-cccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRK-I-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                            +++++ .+.. ...+...+..++..+ ....++..... . ......+.|..|.+.|.+.+.+.| .++.+++|
T Consensus        59 ------~gl~~-~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v  130 (375)
T PRK06847         59 ------LGVLD-ECLE-AGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTV  130 (375)
T ss_pred             ------cCCHH-HHHH-hCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEE
Confidence                  01110 0000 000111111111111 11111110000 0 123456899999999999998777 68888999


Q ss_pred             EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C-Cc-ceEEEEE---EEEEecCCcCCCCceEEecccCCCCCc
Q psy10545        468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F-DG-IYQIFLG---QQWNLSSPHGLDIPIIMDATVNQKNDE  535 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~-~~-~~q~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g  535 (1428)
                      ++++.+  .  |++.+|.++++|+||+|||.+|..   . .. ......+   +...+..+...... .+..+     .+
T Consensus       131 ~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~-----~~  204 (375)
T PRK06847        131 TAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRS-LMYLG-----PT  204 (375)
T ss_pred             EEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccce-EEEeC-----CC
Confidence            988643  2  667788899999999999999762   1 11 1111221   11112222211111 11111     11


Q ss_pred             ceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHHHHcCC-cccee---ee--eeeeeecccCCc-hhhhhccC
Q psy10545        536 YHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYAIKNRW-KLKNI---ER--EEIGSIPIALKN-EKIIKFKK  607 (1428)
Q Consensus       536 ~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~Pl~~~~-~~~~~~~r  607 (1428)
                       ..+.++|.+++..++........ .....+.+.+.+.+.+..+.. ....+   +.  ......|+.... ......+|
T Consensus       205 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr  283 (375)
T PRK06847        205 -TKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGR  283 (375)
T ss_pred             -cEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCe
Confidence             12445688766554332211111 112334445555554443322 11111   11  112234544322 12234589


Q ss_pred             cccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      ++|||||||.++|.+|||++.|++.|..|+..+..
T Consensus       284 v~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~  318 (375)
T PRK06847        284 VVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR  318 (375)
T ss_pred             EEEEechhccCCCCccccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988777777777777654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.65  E-value=5.6e-14  Score=169.26  Aligned_cols=239  Identities=18%  Similarity=0.217  Sum_probs=143.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEE--eCCeEEcccccccCCchHHHHHHHHh--
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYK--QDGFIFDAGPTVITDPNSIKLLFDLS--  780 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~--~~G~~~d~G~~~i~~~~~~~~l~~~l--  780 (1428)
                      +.+.+|+|||||+|||+||++|++.    |++|+|||+++.+||++.+..  .+||.++.|.+.......+.++++.+  
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~~~y~~l~~ll~~ips   99 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREMENHFECLWDLFRSIPS   99 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCccchHHHHHHHHHhccc
Confidence            3457999999999999999999996    689999999999999998754  57999999987533334455555555  


Q ss_pred             ----ccccc-ccceEEecCCc---eEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhccc
Q psy10545        781 ----KNRME-NYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASK  852 (1428)
Q Consensus       781 ----G~~l~-~~l~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (1428)
                          |.++. +.+.+.+.++.   ++..+.+|..+....-         .+.  ....+ .++   .    .    +. .
T Consensus       100 le~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~~---------~L~--~k~r~-~Ll---~----l----~l-~  155 (576)
T PRK13977        100 LEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTDKF---------GLS--KKDRK-ELL---K----L----LL-T  155 (576)
T ss_pred             cCCCCcccccceeeeecCCcccceeeEEcCCCCEEECcCC---------CCC--HHHHH-HHH---H----H----hc-c
Confidence                33222 33444444444   3455555544432210         000  00000 000   0    0    00 0


Q ss_pred             CcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHH--H-HHHHHhcc------ccce
Q psy10545        853 SFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSI--Y-TLIHALEY------EWGI  923 (1428)
Q Consensus       853 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~--~-~~~~~~~~------~~g~  923 (1428)
                      +             --.+ +..++.+|+.+.+....+..++...   ++..+. .|+.  . .+..++..      ..+.
T Consensus       156 ~-------------e~~L-d~~tI~d~f~~~Ff~t~Fw~~w~t~---FaF~~w-hSA~E~rry~~rf~~~~~~l~~~s~l  217 (576)
T PRK13977        156 P-------------EEKL-DDKTIEDWFSPEFFETNFWYYWRTM---FAFEKW-HSALEMRRYMHRFIHHIGGLPDLSGL  217 (576)
T ss_pred             C-------------HHHh-CCcCHHHHHhhcCchhHHHHHHHHH---HCCchh-hHHHHHHHHHHHHHHhhccCCccccc
Confidence            0             0012 3678888888877655444444322   333332 2221  1 11112111      1111


Q ss_pred             ee-ecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--C--CeEEEEEec-CCc-----EEEcCEEEEcCCHHHH
Q psy10545        924 WF-PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--N--NKVNKVHLK-NGQ-----IFDADIIVSNADIINT  989 (1428)
Q Consensus       924 ~~-~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~--~~v~~V~~~-~G~-----~i~ad~VV~A~~~~~~  989 (1428)
                      .+ ...-..+++..|.+.|+++|++|++|++|++|..+  +  ++|++|.+. +|+     ....|.||+|.|...-
T Consensus       218 ~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        218 KFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             cCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            11 12235889999999999999999999999999985  4  568888774 332     3468999999876543

>PRK07236 hypothetical protein; Provisional

Probab=99.64  E-value=4.5e-15  Score=179.57  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=89.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ..+++|+|+|++|+++|+.|+++|++|+|+|+.+.+            .+.+|+|+...+...+....            
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~------------~~~~g~gi~l~~~~~~~l~~------------   61 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTE------------LDGRGAGIVLQPELLRALAE------------   61 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC------------cCCCCceeEeCHHHHHHHHH------------
Confidence            357899999999999999999999999999988643            13456676544433333111            


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEII  470 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i  470 (1428)
                             +++++. .  ....+..........+..+.      ........+.+..+.+.|.+.+.. ..++.+++|+++
T Consensus        62 -------lg~~~~-~--~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~l~~~L~~~~~~-~~i~~~~~v~~i  124 (386)
T PRK07236         62 -------AGVALP-A--DIGVPSRERIYLDRDGRVVQ------RRPMPQTQTSWNVLYRALRAAFPA-ERYHLGETLVGF  124 (386)
T ss_pred             -------cCCCcc-c--ccccCccceEEEeCCCCEee------ccCCCccccCHHHHHHHHHHhCCC-cEEEcCCEEEEE
Confidence                   111110 0  00011111111111111110      011122335677888888876532 258889999999


Q ss_pred             eCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        471 TPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       471 ~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +.+.    |++.+|++++|++||+|||.+|.
T Consensus       125 ~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        125 EQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             EecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            7432    67788999999999999999987

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.55  E-value=1.6e-13  Score=170.25  Aligned_cols=161  Identities=18%  Similarity=0.238  Sum_probs=89.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcC-CCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYN-PKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~-~~~rv~~l~~  389 (1428)
                      ...++|+|+|++|+++|++|+++|++|+|+|+.+....       +.|  ..++++....++.+..+.. ++....+.+.
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r-------~~G--~~~~~I~L~pngl~aLe~LGl~~~e~l~~~  151 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIR-------GEG--KYRGPIQIQSNALAALEAIDIDVAEQVMEA  151 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccc-------ccc--ccCcccccCHHHHHHHHHcCcchHHHHHhh
Confidence            35789999999999999999999999999998763200       001  0112333333332221111 1000000000


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc--ccc-cccceeeechHHHHHHHHHhccCCeEEecce
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN--RKI-FSGYYSICSKHLNSYLIRALGINNFLFNNKT  466 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~  466 (1428)
                      +.....+...                ........+.+.++...  ... ....++|+|.+|++.|.+.+.. ..++.+.+
T Consensus       152 g~~~~~~i~~----------------~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~-~~i~~g~~  214 (668)
T PLN02927        152 GCITGDRING----------------LVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE-DVIRNESN  214 (668)
T ss_pred             cCcccceeee----------------eeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC-CEEEcCCE
Confidence            0000000000                00000011122222111  011 1235789999999999887643 24677889


Q ss_pred             EEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        467 VEIITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       467 v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      |++++.+  .  |++.+|.++++++||+|||.+|.
T Consensus       215 V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        215 VVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             EEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            9988643  3  56778889999999999999986

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.55  E-value=1e-13  Score=169.49  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             HHHhcCCchHHHHHHHHhhcC-CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G-~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      ++|+|+|++|+++|++|+++| ++|+|+|+++..             ..+|+|+...+++.+..... ++-......+..
T Consensus         3 V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~-------------~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~   68 (414)
T TIGR03219         3 VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF-------------GEVGAGVSFGANAVRAIVGL-GLGEAYTQVADS   68 (414)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC-------------CCCccceeeCccHHHHHHHc-CChhHHHHHhcC
Confidence            579999999999999999998 699999998754             34577775555443332221 000000000000


Q ss_pred             ---CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545        393 ---VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEI  469 (1428)
Q Consensus       393 ---~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~  469 (1428)
                         .....|-.|..               .. ....+..   .......+..++|..|.+.|.+.+.. ..+..+++|++
T Consensus        69 ~~~~~~~~~~~~~~---------------~~-~~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~-~~v~~~~~v~~  128 (414)
T TIGR03219        69 TPAPWQDIWFEWRN---------------GS-DASYLGA---TIAPGVGQSSVHRADFLDALLKHLPE-GIASFGKRATQ  128 (414)
T ss_pred             CCccCcceeEEEEe---------------cC-ccceeee---eccccCCcccCCHHHHHHHHHHhCCC-ceEEcCCEEEE
Confidence               00000000000               00 0000000   00011234568999999999998854 34677899999


Q ss_pred             EeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        470 ITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++.+  .  |++.+|.++++++||+|||.+|.
T Consensus       129 i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       129 IEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             EEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            8643  2  67778889999999999999976

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1

Probab=99.53  E-value=2e-14  Score=161.92  Aligned_cols=221  Identities=23%  Similarity=0.228  Sum_probs=173.8

Q ss_pred             cccccch--hhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy10545       1196 AIKLFDP--VIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIIS 1273 (1428)
Q Consensus      1196 ~i~~l~~--~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 1273 (1428)
                      ...+.|.  +.|..+..+|++++.+|||.|+.......         .....+|.. ...........+++..++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   74 (243)
T cd00385           5 AVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGL---------PTAHLAVAI-DGLPEAILAGDLLLADAFEELAR   74 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCc---------hhhhhhHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence            3456677  89999999999999999999986422111         112233210 00000001124677777777776


Q ss_pred             H-----cCCCHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHH-hHHHHHHHHHhhCCC------ccchHHHHHHHHH
Q psy10545       1274 I-----HSFPVHLLFEHLDGFEMDVMERT--YITLDETLGYCYHV-AGTIGLIIAHLIGVK------EKDTLNCARNLGI 1339 (1428)
Q Consensus      1274 ~-----~~l~~~~~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~v-ag~vg~~~~~~~~~~------~~~~~~~a~~~g~ 1339 (1428)
                      .     +....+.+.++++|+..|+....  +.|++|+..||+.+ +++++.++....+..      .+.....+.++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  154 (243)
T cd00385          75 EGSPEALEILAEALLDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGL  154 (243)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            6     66677888999999999998765  89999999999999 899998887776654      2345778899999


Q ss_pred             HHHHHHHHhcchhhhcC--CceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q psy10545       1340 AFQLTNISRDVIDDFYV--GRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLA 1417 (1428)
Q Consensus      1340 a~q~~nilrd~~~d~~~--gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a 1417 (1428)
                      ++|++|.++|+..|.+.  ||+++|..++.++|++.+++......+.+.+++..+...+++.+.+..+....+|...+..
T Consensus       155 ~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (243)
T cd00385         155 AFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLPDVPRAL  234 (243)
T ss_pred             HHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            99999999999999987  8999999999999999998888888889999999999999999999999999888666777


Q ss_pred             HHHHHHHhh
Q psy10545       1418 IVTSWSIYR 1426 (1428)
Q Consensus      1418 ~~~a~~~y~ 1426 (1428)
                      +..+..+|+
T Consensus       235 ~~~~~~~~~  243 (243)
T cd00385         235 LALALNLYR  243 (243)
T ss_pred             HHHHHHHhC
Confidence            777777664

Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter

>KOG2614|consensus

Probab=99.48  E-value=3.7e-13  Score=151.83  Aligned_cols=280  Identities=15%  Similarity=0.123  Sum_probs=136.5

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      .+||+|+|.+|++.|++|+|.|++|+|+|++..+             ...|.++....++++.....             
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~-------------R~~g~si~L~~ng~~aLkai-------------   57 (420)
T KOG2614|consen    4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP-------------RGEGTSINLALNGWRALKAI-------------   57 (420)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc-------------ccCCcceeehhhHHHHHHHc-------------
Confidence            5789999999999999999999999999987655             22256665555554442221             


Q ss_pred             CCCceeeeccCCcCcccccccccccc-c-ccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecc-----
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLIT-Y-SWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNK-----  465 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~-----  465 (1428)
                            +.-+ .+. ++-.|+...+. + .-......++-.+. ..+-..+++|..++..|.++.. .+.+....     
T Consensus        58 ------~~~e-~i~-~~gip~~~~v~~~~~sg~~~~~~~~~~~-~~~i~r~~~r~ll~~lL~~a~~-~~~ikf~~~~~~~  127 (420)
T KOG2614|consen   58 ------GLKE-QIR-EQGIPLGGRVLIHGDSGKEVSRILYGEP-DEYILRINRRNLLQELLAEALP-TGTIKFHSNLSCT  127 (420)
T ss_pred             ------ccHH-HHH-HhcCcccceeeeecCCCCeeEecccCCc-hHHHHHHHHHHHHHHHHHhhcC-CCeeecccccccc
Confidence                  1000 000 01111111100 0 00111121211110 0112234566666666666665 44333222     


Q ss_pred             -eEEEEeC----CeEEEcCCcEEEeeEEEecCCCCCCC-----C----CcceEEEEEEEE-EecCCcCCCCceEEecccC
Q psy10545        466 -TVEIITP----TSIRINNKKIINANCIIDGRGLKNSQ-----F----DGIYQIFLGQQW-NLSSPHGLDIPIIMDATVN  530 (1428)
Q Consensus       466 -~v~~i~~----~~v~l~~g~~~~a~lvI~AdG~~S~~-----~----~~~~q~~~g~~~-~~~~~~~~~~~~~~~~~~~  530 (1428)
                       ....++.    ..+.+.||.++.+|++|||||+.|+.     .    -.+.|...|..+ ....|.+.  .++. +.  
T Consensus       128 ~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~--~vf~-~~--  202 (420)
T KOG2614|consen  128 SKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGK--KVFA-IY--  202 (420)
T ss_pred             cccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCccc--ceec-cc--
Confidence             2222321    12788899999999999999999871     1    123454455442 12233211  1110 00  


Q ss_pred             CCCCcceEEEEeeCCCCceEE------EeEEeccCCCCCHHHHHHH---HHHHHHH-c----CC-ccceeeee---eeee
Q psy10545        531 QKNDEYHFIYTLPLTPNSLMI------EDTRYTKKPFLKIDMLKKS---IKDYAIK-N----RW-KLKNIERE---EIGS  592 (1428)
Q Consensus       531 ~~~~g~~f~~~lPl~~~~~~v------~~~~~~~~~~~~~~~~~~~---l~~~~~~-~----~~-~~~~~~~~---~~~~  592 (1428)
                         .++-+.|..|.....+..      .++.+...+  +++.+++.   +.+++.+ +    .. ....+.+.   .+..
T Consensus       203 ---~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~--e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p  277 (420)
T KOG2614|consen  203 ---GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFD--EPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPP  277 (420)
T ss_pred             ---CCeEEEcccCCceEEEEEeecCCcccccccCcC--CHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCC
Confidence               111112222222211111      222232222  22222221   1111111 0    10 11112221   1223


Q ss_pred             ecccCCchhhhhccCcccccccccccccCCCCC----hHHHHHHHHHHHhhcc
Q psy10545        593 IPIALKNEKIIKFKKTICVGLRANLLHATTGYS----LPIAIQLAENIAKYSI  641 (1428)
Q Consensus       593 ~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G----~~~a~~la~~l~~~~~  641 (1428)
                      .|+.-...   ..++++|+|||||.|-|.-|||    |.|+..|++++.++..
T Consensus       278 ~~~i~~~~---s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~  327 (420)
T KOG2614|consen  278 WPLISVKC---SPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN  327 (420)
T ss_pred             cCeeeecc---CCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence            33333322   2358999999999999999999    5688888888887765

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.45  E-value=1.6e-12  Score=158.48  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=116.5

Q ss_pred             ccceeeechHHHHHHHHHhccCCeEEecceEEEEe--CCe----EEEcCCcEEEeeEEEecCCCCCCCCCc---------
Q psy10545        437 SGYYSICSKHLNSYLIRALGINNFLFNNKTVEIIT--PTS----IRINNKKIINANCIIDGRGLKNSQFDG---------  501 (1428)
Q Consensus       437 ~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~--~~~----v~l~~g~~~~a~lvI~AdG~~S~~~~~---------  501 (1428)
                      ..+|.++|..|++.|.+.|.+.|+.+...+|+.+.  .++    |++.+|++++||+||||+|.+|.-...         
T Consensus       146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~  225 (454)
T PF04820_consen  146 NYAYHLDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDW  225 (454)
T ss_dssp             S-EEEEEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEE
T ss_pred             CeeEEEeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccc
Confidence            35789999999999999999999433344676654  222    678899999999999999998762111         


Q ss_pred             --c--eEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHH
Q psy10545        502 --I--YQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK  577 (1428)
Q Consensus       502 --~--~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~  577 (1428)
                        .  ...++...+....+.......  .    .  ...+++|.+|+.++..+ +.. ++.... ++++..+.+.+.+  
T Consensus       226 ~~~L~~d~av~~~~~~~~~~~~~T~~--~----a--~~~GW~W~IPL~~~~~~-G~V-~s~~~~-s~~~A~~~l~~~l--  292 (454)
T PF04820_consen  226 SDWLPNDRAVAVQVPNEDPPEPYTRS--T----A--FEAGWIWYIPLQNRRGS-GYV-YSSDFI-SDDEAEAELLAYL--  292 (454)
T ss_dssp             TTTCEEEEEEEEEEE-SSCTTSSEEE--E----E--ESSEEEEEEEESSEEEE-EEE-EETTTS-HHHHHHHHHHHHH--
T ss_pred             cccccccEEEEEecCcCCCCCCceeE--E----e--cCCceEEEccCCCcceE-EEE-eccccC-CHHHHHHHHHHhc--
Confidence              0  112222222222211111110  0    0  11357899999887655 443 443322 4455455555554  


Q ss_pred             cCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q psy10545        578 NRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK  657 (1428)
Q Consensus       578 ~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~  657 (1428)
                       +....    .....+++.....++...+|+++|||||+.++|+.+.|+..++..++.+++.+.... .+ ....+.|++
T Consensus       293 -~~~~~----~~~~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~-~~-~~~~~~Yn~  365 (454)
T PF04820_consen  293 -GGSPE----AEPRHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD-FS-PAALDRYNR  365 (454)
T ss_dssp             -TCHCT----TSCEEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT-CC-HHHHHHHHH
T ss_pred             -chhhh----cchhhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC-CC-HHHHHHHHH
Confidence             22111    111344454444444566899999999999999999999999999999988877432 23 334444544

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.37  E-value=3.1e-12  Score=166.29  Aligned_cols=274  Identities=12%  Similarity=-0.001  Sum_probs=135.3

Q ss_pred             HHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTA--GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      ++|+|+||+|+++|+.|+++  |++|+|+|+++..             ...|.|+............. +       .  
T Consensus         3 V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-------------~~~G~Gi~ls~~~l~~L~~~-~-------~--   59 (765)
T PRK08255          3 IVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-------------DTFGWGVVFSDATLGNLRAA-D-------P--   59 (765)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-------------cccCcceEccHHHHHHHHhc-C-------H--
Confidence            57999999999999999998  8999999988754             22344543333221111110 0       0  


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcc-cccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNR-KIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                                  .+    ...+.. ....|....+.+..... .....++.+.|.+|.+.|.+++.+.| .++++++|++
T Consensus        60 ------------~~----~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~  122 (765)
T PRK08255         60 ------------VS----AAAIGD-AFNHWDDIDVHFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPD  122 (765)
T ss_pred             ------------HH----HHHHHH-hcccCCceEEEECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCc
Confidence                        00    000000 00112222222221110 11123556999999999999998888 6777887765


Q ss_pred             EeCCeEEEcCCcEEEeeEEEecCCCCCCCCCcce--------EEEEEE-EEEecCCcCCCCceEEecccCCCCCcceEEE
Q psy10545        470 ITPTSIRINNKKIINANCIIDGRGLKNSQFDGIY--------QIFLGQ-QWNLSSPHGLDIPIIMDATVNQKNDEYHFIY  540 (1428)
Q Consensus       470 i~~~~v~l~~g~~~~a~lvI~AdG~~S~~~~~~~--------q~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~  540 (1428)
                      +..        ...++|+||+|||.+|.......        ...... .+......  ....+ .+ .... .|.-...
T Consensus       123 i~~--------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~--~~~~~-~~-~~~~-~g~~~~~  189 (765)
T PRK08255        123 DQA--------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVF--DAFTF-AF-EETE-HGWFQAH  189 (765)
T ss_pred             hhh--------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcc--cceeE-EE-EecC-CceEEEE
Confidence            532        12579999999999975211000        000000 00111111  00000 00 0111 2221122


Q ss_pred             EeeCCCCceEE-EeEE---ecc--CCCCCHHHHHHHHHHHHHHcCCccceeeee-e----eeeecccCCchhhhhccC--
Q psy10545        541 TLPLTPNSLMI-EDTR---YTK--KPFLKIDMLKKSIKDYAIKNRWKLKNIERE-E----IGSIPIALKNEKIIKFKK--  607 (1428)
Q Consensus       541 ~lPl~~~~~~v-~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~Pl~~~~~~~~~~~r--  607 (1428)
                      ..|++++.... ....   |..  ....+.+...+.+.+.+....... +++.. .    ....++..........+|  
T Consensus       190 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~  268 (765)
T PRK08255        190 AYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRR  268 (765)
T ss_pred             EeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCc
Confidence            34554443222 1110   000  112234455555655554321111 12111 0    112222222223334567  


Q ss_pred             --cccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        608 --TICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       608 --v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                        ++|+|||||.++|..|||.+.+++.|..|++++.
T Consensus       269 ~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~  304 (765)
T PRK08255        269 VPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLH  304 (765)
T ss_pred             ccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHH
Confidence              9999999999999999997766666666655554

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.36  E-value=8.6e-11  Score=142.22  Aligned_cols=221  Identities=20%  Similarity=0.253  Sum_probs=133.6

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccC-CCCCCceeEEeccccCcc-ccccccccccCccCccEEEcCCCccc
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS-SSVKNHIWSFHQTVLSSS-QYMLIKPLITYSWPSYQVKFPKFNRK   86 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~-~~~~~~tw~~w~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (1428)
                      ||++||||||||+++|+.|++.  +++|+|+|+. +....   |.|.-..... .-..+++++.+.|.++.++.++....
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~~~~~~~---cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~   75 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA--GIETILLERALSNIKP---CGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPI   75 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCCCcCc---CcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCcee
Confidence            7999999999999999999986  5899999998 32232   4444211100 11234677888999999998764321


Q ss_pred             ---cC--ccc-cceehhHHHHHHHHH---cCCE-----------------EE--------------EecC--------C-
Q psy10545         87 ---IF--SGY-YSICSKHLNSYLIRA---LGQQ-----------------WN--------------LSSP--------H-  117 (1428)
Q Consensus        87 ---~~--~~Y-~~~~~~~~~~~~~~~---~~~~-----------------~~--------------~~~~--------~-  117 (1428)
                         .+  ..| .+++...|.+.+.+.   .|.+                 +.              +.+.        + 
T Consensus        76 ~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        76 KVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             eeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence               22  345 479999999988762   1111                 11              1100        0 


Q ss_pred             ------CCC-c-e----E---e------eeccc-------CCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHH
Q psy10545        118 ------GLD-I-P----I---I------MDATV-------NQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKK  169 (1428)
Q Consensus       118 ------g~~-~-~----~---~------MD~r~-------~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~  169 (1428)
                            |.. . .    +   +      |+|..       ...-..-.|.|+.|.+++..+.+.|...  .. +.+.+.+
T Consensus       156 ~v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~--~~-~~~~~~~  232 (388)
T TIGR02023       156 PVAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTH--GF-DAKQLQA  232 (388)
T ss_pred             HHHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCC--CC-CHHHHHH
Confidence                  111 0 0    0   0      11110       0000001488999998665555555422  22 4444555


Q ss_pred             HHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCC----CcHHHHHHHHHHHHHHhhh
Q psy10545        170 SIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTG----YSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       170 ~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstG----Ys~~~~~~~a~~~a~~~~~  242 (1428)
                      .+.+++   ++...++++.|.+.|||....++  ..++++-+|-|||+++|.||    |++..+...|+.+++.+..
T Consensus       233 ~l~~~~---~~~~~~~~~~~~~~ip~~~~~~~--~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~  304 (388)
T TIGR02023       233 NLRRRA---GLDGGQTIRREAAPIPMKPRPRW--DFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN  304 (388)
T ss_pred             HHHHhh---CCCCceEeeeeeEeccccccccc--cCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence            554443   45566788889999999544221  24679999999999999999    5666666666666666643

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.34  E-value=1.6e-10  Score=136.95  Aligned_cols=322  Identities=17%  Similarity=0.216  Sum_probs=190.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe---------------------CCeEEcccccccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ---------------------DGFIFDAGPTVIT  768 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~---------------------~G~~~d~G~~~i~  768 (1428)
                      ..+||||+|.|+.-...|..|++.|++|+.+|+++.-||..+|++.                     ..|.+|.-|..+.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~   82 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY   82 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence            5799999999999999999999999999999999999999999852                     2477888888777


Q ss_pred             CchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545        769 DPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS  848 (1428)
Q Consensus       769 ~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  848 (1428)
                      ..+.+-+++-.-+  +..+++|...+..+  .+.+|+...+|.+..+.... ..+...++..+.+|+..+......    
T Consensus        83 a~g~LV~lLi~S~--V~rYLEFk~V~~~~--v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~----  153 (438)
T PF00996_consen   83 ARGPLVKLLISSG--VTRYLEFKAVDGSY--VYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEED----  153 (438)
T ss_dssp             TTSHHHHHHHHCT--GGGGSEEEEESEEE--EEETTEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTT----
T ss_pred             ccCHHHHHHHhCC--cccceEEEEcceeE--EEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccC----
Confidence            6666666766666  57889999988754  55688888998876553322 112233555666676665432111    


Q ss_pred             hcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchh---HHHHHHHHh---cc--
Q psy10545        849 FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTS---SIYTLIHAL---EY--  919 (1428)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s---~~~~~~~~~---~~--  919 (1428)
                          ......        -.+. ...++.++++++.-++.+..++. ..+........+.+   .+..+..|+   ..  
T Consensus       154 ----~~~~~~--------~~~~-~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG  220 (438)
T PF00996_consen  154 ----DPSTHK--------GLDP-EKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYG  220 (438)
T ss_dssp             ----BGGGST--------TG-T-TTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCS
T ss_pred             ----Ccchhh--------cccc-ccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccC
Confidence                000000        0001 25778888887777777777764 23322111100111   222222232   21  


Q ss_pred             ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCC
Q psy10545        920 EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYA  998 (1428)
Q Consensus       920 ~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~  998 (1428)
                      .....+|.-|.++|++++.+...-.|+...+|++|.+|..+ ++++.+|.. +|+++.|++||...  ..+.     +  
T Consensus       221 ~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dp--sy~p-----~--  290 (438)
T PF00996_consen  221 KSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDP--SYLP-----E--  290 (438)
T ss_dssp             SSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEG--GGBG-----C--
T ss_pred             CCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECC--ccCc-----c--
Confidence            12345888899999999999998999999999999999985 578888875 88899999999643  3211     1  


Q ss_pred             CChhHHHHHhhcCCCCceEEEEEeecCCcCCCc---ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCC
Q psy10545        999 FGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA---HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPT 1075 (1428)
Q Consensus       999 ~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~ 1075 (1428)
                             ....   ...+....+.++.++++..   ...+.+++.            .......+++..-+. +...+|.
T Consensus       291 -------~v~~---~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~------------~~~~~~dIyv~~~ss-~~~~CP~  347 (438)
T PF00996_consen  291 -------KVKK---TGQVSRAICILDHPIPNTEDASSVQIIIPQS------------QVGRKSDIYVLQLSS-STGVCPK  347 (438)
T ss_dssp             -------GEEE---EEEEEEEEEEESS-STTSTT-SSEEEEE-GG------------GCTSSS-EEEEEEEG-GGTSS-T
T ss_pred             -------cccc---cceEEEEEEEEcCCCCCCCCCceEEEecCCc------------ccCCCCCeEEEEECC-CccccCC
Confidence                   0111   1135566677888876532   234455421            112233366655443 4577999


Q ss_pred             CccEEEEEEec
Q psy10545       1076 GCSTFYALIPV 1086 (1428)
Q Consensus      1076 G~~~l~v~~~~ 1086 (1428)
                      |+.++++.+..
T Consensus       348 G~yi~~~St~~  358 (438)
T PF00996_consen  348 GQYIAYVSTTV  358 (438)
T ss_dssp             T-EEEEEEEEE
T ss_pred             CcEEEEEEecc
Confidence            99998888765

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.30  E-value=2.9e-11  Score=142.03  Aligned_cols=238  Identities=16%  Similarity=0.143  Sum_probs=141.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE-EcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI-FDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~-~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      ++||+|||||++||++|++|++.|.+|+|+|+++.+||.+.+....|.. .+.|+|+++. ...+.+++..+.       
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-------   73 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF-------   73 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc-------
Confidence            4799999999999999999999999999999999999999988777754 5899998875 233344444432       


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLND-IKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL  867 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (1428)
                      ++...... .....+|+.+++|-+...    +..+++.. ......++...   ...    -...|..+           
T Consensus        74 ~~~~~~~~-~~~~~~g~~~~~P~~~~~----i~~l~~~~~~~~~~~~l~~~---~~~----~~~~~~~~-----------  130 (377)
T TIGR00031        74 ELNNYQHR-VLALYNNLDLTLPFNFNQ----FRKLLGVKDAQELQNFFNAQ---FKY----GDHVPLEE-----------  130 (377)
T ss_pred             cccceeEE-EEEEECCeEEccCCCHHH----HHHhcccchHHHHHHHHHHH---hhc----ccCCCCCC-----------
Confidence            11111111 123446788888875432    33333221 22222221111   100    00111111           


Q ss_pred             HhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH-HHHH-hccc------cceeeecCchHHHHHHHH
Q psy10545        868 IKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT-LIHA-LEYE------WGIWFPKGGVGALIKALI  938 (1428)
Q Consensus       868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~-~~~~-~~~~------~g~~~~~gG~~~l~~~L~  938 (1428)
                           ..+..++.-+.++....+.++.. ....||.+|.++++... -+.. +...      .-..+|++|...+.+.|.
T Consensus       131 -----~~e~~d~~~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml  205 (377)
T TIGR00031       131 -----LQEIADPDIQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKML  205 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHH
Confidence                 11223333556666666666663 44577888888776321 1100 0100      113578999999999885


Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~  991 (1428)
                      +   ..+++|++|+.+..++.++++   +.+.++ .+. +.||.|.++..++.
T Consensus       206 ~---~~~i~v~l~~~~~~~~~~~~~---~~~~~~-~~~-~~vi~Tg~id~~f~  250 (377)
T TIGR00031       206 D---HPLIDVKLNCHINLLKDKDSQ---LHFANK-AIR-KPVIYTGLIDQLFG  250 (377)
T ss_pred             h---cCCCEEEeCCccceeeccccc---eeeccc-ccc-CcEEEecCchHHHh
Confidence            4   346899999988888755443   333333 333 88999987776654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.30  E-value=2.9e-12  Score=111.60  Aligned_cols=64  Identities=34%  Similarity=0.577  Sum_probs=55.9

Q ss_pred             ecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc---hHHHHHHHH
Q psy10545        716 FSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP---NSIKLLFDL  779 (1428)
Q Consensus       716 IIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~---~~~~~l~~~  779 (1428)
                      |||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|++++..+   +.+.+++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~   67 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLRE   67 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcC
Confidence            8999999999999999999999999999999999999999999999999998753   355666654

...

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.29  E-value=5e-11  Score=134.66  Aligned_cols=64  Identities=20%  Similarity=0.375  Sum_probs=57.4

Q ss_pred             cceeeec-CchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        921 WGIWFPK-GGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       921 ~g~~~~~-gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      .|..+|. ...+.|+++|.+++++.|++|+++++|.+|..++.+ ..|.+.+|+++.||.+|+|++
T Consensus       100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEEccEEEEecC
Confidence            4556666 778999999999999999999999999999998854 789999998999999999997

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.26  E-value=1.3e-10  Score=135.36  Aligned_cols=223  Identities=18%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe---ccccCccccccccccccCccCccEEEcCCCcc
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH---QTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR   85 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (1428)
                      ||++|||||+||+++|++|++.  +.+|+|||+++.... .||--   ..-+..+.. +... ....|....++....+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~   75 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDL-PLEL-IVNLVRGARFFSPNGDS   75 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCc-ccccCccCHhHHHHhcC-Cchh-hhhheeeEEEEcCCCcE
Confidence            7999999999999999999986  579999999875532 33311   100000000 0111 12234444455444322


Q ss_pred             -cc---CccccceehhHHHHHHHHH---cCC----------------E--EE-------Eec--------C-------CC
Q psy10545         86 -KI---FSGYYSICSKHLNSYLIRA---LGQ----------------Q--WN-------LSS--------P-------HG  118 (1428)
Q Consensus        86 -~~---~~~Y~~~~~~~~~~~~~~~---~~~----------------~--~~-------~~~--------~-------~g  118 (1428)
                       ..   ...+.+++..+|.+.+.+.   .|.                .  +.       ++.        .       .|
T Consensus        76 ~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~  155 (295)
T TIGR02032        76 VEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLG  155 (295)
T ss_pred             EEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence             11   2345678998998888762   111                0  00       100        0       01


Q ss_pred             CC-------ceEeeecccCC------------C--CCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHH
Q psy10545        119 LD-------IPIIMDATVNQ------------K--NDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK  177 (1428)
Q Consensus       119 ~~-------~~~~MD~r~~~------------~--~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~  177 (1428)
                      ++       ......+..+.            .  .....|+|++|++++++.|+.|.+.+..   ....++.+++++..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~  232 (295)
T TIGR02032       156 LRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEE---GEDLKKYLKDFLAR  232 (295)
T ss_pred             CCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCC---CCCHHHHHHHHHHh
Confidence            10       01111111110            0  0113689999999999999999887642   24456677777766


Q ss_pred             cC-CcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHh
Q psy10545        178 NR-WKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  240 (1428)
Q Consensus       178 ~g-~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~  240 (1428)
                      .. +...++.+.+.+.+|+..... +....+++.+|-||++++|.+||.+..+.+.|..+|+.+
T Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       233 RPELKDAETVEVIGAPIPIGRPDD-KTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             CcccccCcEEeeeceeeccCCCCC-ccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            53 566778899999999975532 113578999999999999999999999999998887753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.21  E-value=4e-11  Score=142.83  Aligned_cols=65  Identities=29%  Similarity=0.445  Sum_probs=49.6

Q ss_pred             ceeeecC-chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        922 GIWFPKG-GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       922 g~~~~~g-G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      |..||.. -...+.+.|.+.+++.|++|+++++|++|..+++++..|.+++++++.||.||+|++.
T Consensus        99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG  164 (409)
T PF03486_consen   99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG  164 (409)
T ss_dssp             TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred             CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence            5556654 5678999999999999999999999999999999889999977779999999999874

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.19  E-value=2e-10  Score=136.77  Aligned_cols=75  Identities=8%  Similarity=0.106  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcCCcceeEEEEEEEeecCCCC-cchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhhc
Q psy10545        169 KSIKDYAIKNRWKLKNIEREEIGSIPIALK-NEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITT  243 (1428)
Q Consensus       169 ~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~-~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~~  243 (1428)
                      +.+.+++.+.|....++++.|.+.+|.... ..+....++++-||-|||++||+||+.+..+++.+..+++.+.++
T Consensus       226 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~  301 (351)
T PRK11445        226 ETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ  301 (351)
T ss_pred             HHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence            366778877788777888888877654322 111011367999999999999999999999999999999999644

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.13  E-value=2e-10  Score=137.95  Aligned_cols=67  Identities=33%  Similarity=0.493  Sum_probs=57.9

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      +.+.+.+|   ...+++.|.+.+++.|++|+++++|++|..+++++.+|.+++|+ +.||+||+|++++..
T Consensus       135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence            56677777   79999999999999999999999999999999998889999996 999999999988753

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.12  E-value=4.7e-09  Score=126.97  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..++..+.+.+.+.|++++++++|++|..+++. +.|++++| ++.||.||+|++.+.
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcch
Confidence            567778888888899999999999999988775 56888888 799999999998864

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.12  E-value=1.5e-08  Score=123.83  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..++..|.+.+.++|++++.+++|++|..+ ++++++|++++| ++.++.||++++.+.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            467778888999999999999999999865 566778888888 799999999887765

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.08  E-value=3.2e-09  Score=124.94  Aligned_cols=67  Identities=28%  Similarity=0.433  Sum_probs=56.5

Q ss_pred             eeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcE-EEcCEEEEcCCHHHH
Q psy10545        923 IWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI-FDADIIVSNADIINT  989 (1428)
Q Consensus       923 ~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~-i~ad~VV~A~~~~~~  989 (1428)
                      .+.+.+|   ...++.+|++.+.++|++|++|++|+.|..++++++.+.+.+|++ ++|+.||.++|....
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad  212 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD  212 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence            4444444   577899999999999999999999999999887667788888876 999999999987643

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.05  E-value=2.2e-08  Score=121.37  Aligned_cols=230  Identities=17%  Similarity=0.175  Sum_probs=141.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE---EeccccCccccccccccccCccCccEEEcCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS---FHQTVLSSSQYMLIKPLITYSWPSYQVKFPKF   83 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~---~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (1428)
                      .+||++||||||||+++|++|++.+  ++|+++|++..++.+.-|   .....+.+....+... +...-....++++..
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~~~~~~~~   78 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGARIYFPGE   78 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeeeEEEecCC
Confidence            3699999999999999999999986  899999999888655655   3332221211111111 333334555666643


Q ss_pred             ccccCc---cccceehhHHHHHHHHH---cCCEE-------------------------EEe------------------
Q psy10545         84 NRKIFS---GYYSICSKHLNSYLIRA---LGQQW-------------------------NLS------------------  114 (1428)
Q Consensus        84 ~~~~~~---~Y~~~~~~~~~~~~~~~---~~~~~-------------------------~~~------------------  114 (1428)
                      ...+..   ....++...|.+.|.+.   .|.++                         ++.                  
T Consensus        79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~l  158 (396)
T COG0644          79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKL  158 (396)
T ss_pred             ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHh
Confidence            333333   27788999999977651   11111                         110                  


Q ss_pred             --c---CC----C----CCc-----eEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHH
Q psy10545        115 --S---PH----G----LDI-----PIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAI  176 (1428)
Q Consensus       115 --~---~~----g----~~~-----~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~  176 (1428)
                        .   |+    +    +..     ...+-|-.... ...-|.++-|..++++-|--.+....+.+. ..+ +.++++..
T Consensus       159 g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~-~~~-~~l~~f~~  235 (396)
T COG0644         159 GLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDV-GPGGYGWIFPLGDGHANVGIGVLLDDPSLS-PFL-ELLERFKE  235 (396)
T ss_pred             CCCCCChhheeEEeEEEEecCCCCceEEEEecCCcc-CCCceEEEEECCCceEEEEEEEecCCcCCC-chH-HHHHHHHh
Confidence              0   11    0    011     11222111111 233467777999999999999888773322 222 44454443


Q ss_pred             HcCCcc----eeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        177 KNRWKL----KNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       177 ~~g~~~----~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      ..-+..    .++++.-.|.||+......+-..++++-+|=|||++.|.||=....+...+...|+.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~  305 (396)
T COG0644         236 HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE  305 (396)
T ss_pred             CcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence            321111    467777889999987732111246899999999999999998888888888777777753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.05  E-value=1.5e-08  Score=122.45  Aligned_cols=65  Identities=25%  Similarity=0.382  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEec-CCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        930 VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLK-NGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~-~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ...+-+.|.+.+.+.+ ++++++++|+.+..+++.+. |+++ +|+++.||.||-|-|....+++.++
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            4567778888888777 89999999999999988766 8888 9999999999999999999998877

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.03  E-value=3.5e-09  Score=109.07  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=38.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..||+|||||+|||+||++|+++|.+|+|+|++-.+||-++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            46999999999999999999999999999999999998664

>KOG1459|consensus

Probab=99.02  E-value=2.3e-09  Score=116.83  Aligned_cols=218  Identities=16%  Similarity=0.143  Sum_probs=170.8

Q ss_pred             cccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHH---H
Q psy10545       1190 SKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAF---L 1266 (1428)
Q Consensus      1190 g~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~---~ 1266 (1428)
                      .+.....+..+-++.+..++..|-+||.+|-+++.+..   ..      ...++|..|....++.+.+.+    ++   .
T Consensus       140 tk~mg~Gma~~~~~~v~ti~d~d~yChyvagLVg~gls---rl------f~~s~le~~~~~~e~l~ns~g----lfLqkt  206 (413)
T KOG1459|consen  140 TKRMGLGMALFIPEEVETIWDYDVYCHYVAGLVGIGLS---RL------FTASKLEDLLARLEQLSNSMG----LFLQKT  206 (413)
T ss_pred             HHHHhchHHHhhHHHHhHHHHHHHHHHHHHHhhCCchH---hh------hhHHHHhhhhhhHHHHhcccc----hHHHHh
Confidence            34444455555666799999999999999999998532   21      123566667666666555432    22   2


Q ss_pred             HHHHHHHHcCCCHHHHH-HHHHHHHhh-ccCCCCCCHHHHHHHHHHHhHHHHHHHHH-----hhCCCccchHHHHHHHHH
Q psy10545       1267 ALQKIISIHSFPVHLLF-EHLDGFEMD-VMERTYITLDETLGYCYHVAGTIGLIIAH-----LIGVKEKDTLNCARNLGI 1339 (1428)
Q Consensus      1267 ~l~~~~~~~~l~~~~~~-~li~~~~~d-l~~~~~~t~~~l~~Y~~~vag~vg~~~~~-----~~~~~~~~~~~~a~~~g~ 1339 (1428)
                      ++.+...+....-.+|. +.|.|+.+| +.+-+|+..+|+--||+++++|+|+|..+     +-+.+++.....+.-.++
T Consensus       207 nIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yls~l~~qsvfnfcaipqi  286 (413)
T KOG1459|consen  207 NIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYLSKLRTQSVFNFCAIPQI  286 (413)
T ss_pred             HHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccchhHHHHHHHHHHHHHhhccHHHHHHHhhcccHHHHHHHHHHHH
Confidence            33344455556667777 899999999 99999999999999999999999997554     346677778889999999


Q ss_pred             HHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy10545       1340 AFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIV 1419 (1428)
Q Consensus      1340 a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~ 1419 (1428)
                      +-|.||++++..+|..+||+|||+      |.+.+++.+..+.+++.+.......+++..++.+....-.|....+..+.
T Consensus       287 mai~Tlal~~nn~dvfrG~Vklrk------Gl~~~~I~~~k~~~~v~~~f~~y~~~i~~k~d~~dpnflklsask~~qv~  360 (413)
T KOG1459|consen  287 MAIATLALCYNNEDVFRGNVKLRK------GLAVELILASKTMDKVRNIFYMYLRDIRMKFDEADPNFLKLSASKTEQVW  360 (413)
T ss_pred             HHHHHHHHHhcCHhHhccceeecC------CchHHHHHhcccHHHHHHHHHHHHHHHHhhCCccCCCchhhhhhhHHHHH
Confidence            999999999999999999999998      99999999999999999999999999999998888776666656666666


Q ss_pred             HHHHHhh
Q psy10545       1420 TSWSIYR 1426 (1428)
Q Consensus      1420 ~a~~~y~ 1426 (1428)
                      .....|+
T Consensus       361 esl~~~~  367 (413)
T KOG1459|consen  361 ESLLLYR  367 (413)
T ss_pred             HHHHHhh
Confidence            5555554

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.01  E-value=1.2e-08  Score=124.06  Aligned_cols=64  Identities=19%  Similarity=0.375  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+.+.|.+.+++.|++++++++|++|..++++ +.|++++|+++.+|.||.|.+.....++.++
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g  176 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAIAADGAASTLRELAG  176 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence            456777888888889999999999999988776 4588888889999999999998876666554

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.98  E-value=6.5e-08  Score=117.16  Aligned_cols=222  Identities=16%  Similarity=0.157  Sum_probs=126.3

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC-CceeEEeccccCccccccccccccCccCccEEEcCCCccc-
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRK-   86 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~-~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-   86 (1428)
                      +|++||||||||+++|+.|++.+  ++|+|||+..... ...-+.-..-+..  -...++++.++|+...++.+..... 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~~~~~cg~~i~~~~l~~--~g~~~~~~~~~i~~~~~~~p~~~~~~   76 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPDNAKPCGGAIPLCMVDE--FALPRDIIDRRVTKMKMISPSNIAVD   76 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCCCCCCccccccHhhHhh--ccCchhHHHhhhceeEEecCCceEEE
Confidence            69999999999999999999864  8999999876542 2111211110111  1223566777888888877763221 


Q ss_pred             -----cCccc-cceehhHHHHHHHHH---cCCE--------------------EE---------------EecCC-----
Q psy10545         87 -----IFSGY-YSICSKHLNSYLIRA---LGQQ--------------------WN---------------LSSPH-----  117 (1428)
Q Consensus        87 -----~~~~Y-~~~~~~~~~~~~~~~---~~~~--------------------~~---------------~~~~~-----  117 (1428)
                           ...+| .+++...|.+.|.+.   .|.+                    ++               +.+..     
T Consensus        77 ~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgAD  156 (398)
T TIGR02028        77 IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGAD  156 (398)
T ss_pred             eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECC
Confidence                 13355 479999998877662   1111                    11               10000     


Q ss_pred             C----------CCc-eEeeec----ccCCC---------------CCCce-EEEEccCCCCcEEEEEeeecCCCCCCHHH
Q psy10545        118 G----------LDI-PIIMDA----TVNQK---------------NDEYH-FIYTLPLTPNSLMIEDTRYTKKPFLKIDM  166 (1428)
Q Consensus       118 g----------~~~-~~~MD~----r~~~~---------------~~~~~-F~Y~lP~~~~~~liE~T~~~~~~~~~~~~  166 (1428)
                      |          ... ...+.+    +.+..               .-.+. |.++.|.++ ++-|.--.+....  ..+.
T Consensus       157 G~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~~~--~~~~  233 (398)
T TIGR02028       157 GANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAAKP--EIKR  233 (398)
T ss_pred             CcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeCCCCc--cHHH
Confidence            1          110 001111    11100               00122 689999984 5557654433222  3344


Q ss_pred             HHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHh
Q psy10545        167 LKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  240 (1428)
Q Consensus       167 ~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~  240 (1428)
                      +.+.++.+... .....++++.+.+.||+......  ..++++-+|=|||+++|.||=.+..+.+.+...|+.+
T Consensus       234 ~~~~l~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~--~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i  304 (398)
T TIGR02028       234 LQSGIRARAAG-KVAGGRIIRVEAHPIPEHPRPRR--VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI  304 (398)
T ss_pred             HHHhhhhhhhh-ccCCCcEEEEEEEeccccccccE--ECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHH
Confidence            55555444222 12335677888999998643111  2468999999999999999966666666555444444

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.97  E-value=3.4e-09  Score=115.19  Aligned_cols=229  Identities=16%  Similarity=0.198  Sum_probs=134.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--CCe-EEcccccccCCch-HHHHHHHHhcccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--DGF-IFDAGPTVITDPN-SIKLLFDLSKNRMEN  786 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--~G~-~~d~G~~~i~~~~-~~~~l~~~lG~~l~~  786 (1428)
                      ++|.+|||||++|+..|..|++.|++|+|+||++.+||.|.+...  .|. .+-.|+|.|+..+ .+.+.+..+-     
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~-----   75 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT-----   75 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh-----
Confidence            479999999999999999999999999999999999999999876  464 5677999998632 2223322221     


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                        ++.+.... .....+|..+.+|-+...+...+.+..  ..+..+.|.+.-..       ..   +             
T Consensus        76 --e~~~Y~hr-Vla~~ng~~~~lP~nl~ti~ql~G~~~--~p~~a~~~i~~~~~-------~~---~-------------  127 (374)
T COG0562          76 --EFNPYQHR-VLALVNGQLYPLPFNLNTINQLFGKNF--TPDEARKFIEEQAA-------EI---D-------------  127 (374)
T ss_pred             --hhhhhccc-eeEEECCeeeeccccHHHHHHHhCccC--CHHHHHHHHHHhhc-------cc---c-------------
Confidence              12111111 123457888888888765544443222  11122222211110       00   0             


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhH-HHHHHH--------HhccccceeeecCchHHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSS-IYTLIH--------ALEYEWGIWFPKGGVGALIKA  936 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~-~~~~~~--------~~~~~~g~~~~~gG~~~l~~~  936 (1428)
                         .....++++-.-+.+..+..+.++. +....||.+|.++++ ...-+.        ++.. .=...|++|+..+.+.
T Consensus       128 ---~~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d-~yQGlP~~GYT~~~~k  203 (374)
T COG0562         128 ---IAEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD-TYQGLPKDGYTAMFEK  203 (374)
T ss_pred             ---ccchhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc-ccccCccccHHHHHHH
Confidence               0012223333333344455555555 344567888887765 222111        1100 0012678999888888


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTY  990 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~  990 (1428)
                      |++   ..+++|++|+.-..|.....           .+.+..||.|.+.....
T Consensus       204 Ml~---hp~I~V~Lntd~~~~~~~~~-----------~~~~~~VvytG~iD~~F  243 (374)
T COG0562         204 MLD---HPNIDVRLNTDFFDVKDQLR-----------AIPFAPVVYTGPIDAYF  243 (374)
T ss_pred             Hhc---CCCceEEecCcHHHHhhhhc-----------ccCCCceEEecchHhhh
Confidence            854   34689999987766642221           14455889888665443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.97  E-value=6.1e-09  Score=127.40  Aligned_cols=66  Identities=18%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~  988 (1428)
                      +.+++.+|   ...++..|.+.+++.|++|+.+++|++|..+++++ .|.+.++     .++.||+||+|++++.
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence            45555543   35678889999999999999999999999877764 3443332     3789999999999874

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.97  E-value=3.5e-08  Score=119.92  Aligned_cols=231  Identities=16%  Similarity=0.185  Sum_probs=134.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-C-CceeE-----EeccccCcc-ccccccccccCcc---Cc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-K-NHIWS-----FHQTVLSSS-QYMLIKPLITYSW---PS   75 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~-~~tw~-----~w~~~~~~~-~~~~~~~~~~~~w---~~   75 (1428)
                      ..+|++||||||||+++|+.|++.  +.+|+|+|+++.. . ...|+     .+..-...+ ..+.++.+..+.|   ..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   81 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD   81 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence            368999999999999999999986  4799999988665 2 22332     111100000 0112233322333   23


Q ss_pred             cEEEcCCCcc--------ccCccccceehhHHHHHHHHH---cC-CEE---------------EEe--------c-----
Q psy10545         76 YQVKFPKFNR--------KIFSGYYSICSKHLNSYLIRA---LG-QQW---------------NLS--------S-----  115 (1428)
Q Consensus        76 ~~~~~~~~~~--------~~~~~Y~~~~~~~~~~~~~~~---~~-~~~---------------~~~--------~-----  115 (1428)
                      +.++.....+        ..+..+..+++.+|.+.+.+.   .| ..+               .+.        .     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~  161 (388)
T PRK07608         82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVG  161 (388)
T ss_pred             EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEE
Confidence            3444332111        123445678899999888662   12 111               010        0     


Q ss_pred             ---CC-------CC--------CceEeeecccCCCCCCc--------eEEEEccCCCCcEEEEEeeecCC----CCCCHH
Q psy10545        116 ---PH-------GL--------DIPIIMDATVNQKNDEY--------HFIYTLPLTPNSLMIEDTRYTKK----PFLKID  165 (1428)
Q Consensus       116 ---~~-------g~--------~~~~~MD~r~~~~~~~~--------~F~Y~lP~~~~~~liE~T~~~~~----~~~~~~  165 (1428)
                         .+       |+        ...++|++..+......        .+++.+|+.++++.++.+.-...    ...+.+
T Consensus       162 adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (388)
T PRK07608        162 ADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALSPE  241 (388)
T ss_pred             eCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHH
Confidence               00       11        23567788765421121        24568999999988765432111    112445


Q ss_pred             HHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        166 MLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       166 ~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      .+.+.+...+... ....+....+. .+|+.... .+.. .++++-+|=|++.++|.+|+.+..+++.|..+|+.|..
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~  316 (388)
T PRK07608        242 ALAARVERASGGR-LGRLECVTPAA-GFPLRLQR-VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAG  316 (388)
T ss_pred             HHHHHHHHHHHHh-cCCceecCCcc-eeecchhh-hhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHH
Confidence            6666666655431 11122222233 47876542 1122 46799999999999999999999999999999999963

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.97  E-value=1.5e-08  Score=130.92  Aligned_cols=65  Identities=20%  Similarity=0.373  Sum_probs=54.5

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+++.+|   ...++.+|.+.+++ |++|+++++|++|..++++ +.|.+++|..+.||.||+|++.+.
T Consensus       396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCc
Confidence            55666665   36889999999988 9999999999999988887 448888887788999999998774

>PRK06847 hypothetical protein; Provisional

Probab=98.97  E-value=1.8e-08  Score=121.80  Aligned_cols=63  Identities=21%  Similarity=0.323  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..++++ +.|.+.+|+++.+|.||.|.+.....+..+
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l  169 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGLYSKVRSLV  169 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence            456677888888889999999999999887776 567788998999999999999877666544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.96  E-value=3e-09  Score=111.00  Aligned_cols=43  Identities=28%  Similarity=0.553  Sum_probs=35.7

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++||+|||||++||+||++|+++|++|+|+|++..+||.++
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            3469999999999999999999999999999999999998664

>PRK07190 hypothetical protein; Provisional

Probab=98.96  E-value=9e-08  Score=118.43  Aligned_cols=64  Identities=19%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+-+.|.+.+++.|++|+++++|++|..++++ +.|.+.+|+++.|++||.|.+....+++.++-
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi  173 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSRYVIGADGSRSFVRNHFNV  173 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeCEEEECCCCCHHHHHHcCC
Confidence            34456677788889999999999999988876 44566788899999999999999888877663

>PRK07045 putative monooxygenase; Reviewed

Probab=98.95  E-value=7.2e-08  Score=117.02  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCe-EEEEEecCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545        932 ALIKALIKLFQN-LGGNLILNSQVISIYVNNNK-VNKVHLKNGQIFDADIIVSNADIINTYRNL  993 (1428)
Q Consensus       932 ~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~-v~~V~~~~G~~i~ad~VV~A~~~~~~~~~L  993 (1428)
                      .+.+.|.+.+.+ .|++++++++|+.|..+++. ++.|++++|+++.+|.||.|-|.....++.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~  170 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD  170 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence            455666766653 47999999999999886544 467888899999999999999998888874

>KOG1298|consensus

Probab=98.94  E-value=8.2e-09  Score=114.21  Aligned_cols=311  Identities=15%  Similarity=0.098  Sum_probs=160.3

Q ss_pred             hHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        309 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       309 ~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      ..+.|+||+|+|..|.+.|.+|+|.|-+|.||||.=..  |+         .+.|-=|+++-.. .+.+.       .++
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E--Pd---------RivGEllQPGG~~-~L~~L-------Gl~  103 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE--PD---------RIVGELLQPGGYL-ALSKL-------GLE  103 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc--ch---------HHHHHhcCcchhH-HHHHh-------CHH
Confidence            35678999999999999999999999999999975221  11         2223333332211 00000       010


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccc-cCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-CeEEecce
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYS-WPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-NFLFNNKT  466 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~  466 (1428)
                      .          .- ++|   .+++.....+.. .....+.+|..+-.....|...++.+|-+.|.+++... |+.+...+
T Consensus       104 D----------cv-e~I---DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt  169 (509)
T KOG1298|consen  104 D----------CV-EGI---DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT  169 (509)
T ss_pred             H----------Hh-hcc---cceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee
Confidence            0          00 011   111112222221 12234445543333444588899999999999999775 45566666


Q ss_pred             EEEEeC-Ce----EEEc--CCc--EEEeeEEEecCCCCCCC---CC-----cceEEEEEEEEEe-cCCcCCCCceEEecc
Q psy10545        467 VEIITP-TS----IRIN--NKK--IINANCIIDGRGLKNSQ---FD-----GIYQIFLGQQWNL-SSPHGLDIPIIMDAT  528 (1428)
Q Consensus       467 v~~i~~-~~----v~l~--~g~--~~~a~lvI~AdG~~S~~---~~-----~~~q~~~g~~~~~-~~~~~~~~~~~~~~~  528 (1428)
                      |.++-+ ++    |+.+  .|+  +..|.+-|.|||--|.-   +.     .-..+++|.-.+- +.|..+...+++.  
T Consensus       170 V~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~--  247 (509)
T KOG1298|consen  170 VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILS--  247 (509)
T ss_pred             HHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEec--
Confidence            766533 22    4554  233  56789999999987651   11     1234666765332 2222222111111  


Q ss_pred             cCCCCCcceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHHHH-cCCccce-----eeeeeeeeecccCCchh
Q psy10545        529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYAIK-NRWKLKN-----IEREEIGSIPIALKNEK  601 (1428)
Q Consensus       529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~-----~~~~~~~~~Pl~~~~~~  601 (1428)
                            .+.++-+-|.++..+.+..-+..+. +....-+++..+.+-+.- .+..+.+     +....-.+.|-....+.
T Consensus       248 ------~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~  321 (509)
T KOG1298|consen  248 ------KPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPAT  321 (509)
T ss_pred             ------CCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCC
Confidence                  1223334455555444433333332 111223344443332210 0111111     11111223343333333


Q ss_pred             hhhccCcccccccccccccCCCCCh----HHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHh
Q psy10545        602 IIKFKKTICVGLRANLLHATTGYSL----PIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQK  664 (1428)
Q Consensus       602 ~~~~~rv~lvGdAA~~vhP~~G~G~----~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  664 (1428)
                      .....+++++|||=.+=||+||.|+    .|+..|-+.|...    .+. ..+.+.++.+.|.+.|+-
T Consensus       322 ~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl----~dL~d~ekv~~~i~sFy~~RKp  385 (509)
T KOG1298|consen  322 LNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPL----PDLSDAEKVSDYIKSFYWIRKP  385 (509)
T ss_pred             cCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccc----cccccHHHHHHHHHHHHHhhcc
Confidence            3344799999999999999999995    5665554444321    233 335566666666665554

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.92  E-value=1.3e-07  Score=115.56  Aligned_cols=225  Identities=16%  Similarity=0.128  Sum_probs=130.7

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC-CceeEEeccccCccccccccccccCccCccEEEcCCCcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR   85 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~-~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (1428)
                      ++||++||||||||+++|..|++.+  ++|+|+|+.+... ...-+.-..-+.  ...+.+.++.+.+....++.+....
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~~~~k~cgg~i~~~~l~--~lgl~~~~~~~~i~~~~~~~p~~~~  113 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKLDNAKPCGGAIPLCMVG--EFDLPLDIIDRKVTKMKMISPSNVA  113 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCCccccccHhHHh--hhcCcHHHHHHHhhhheEecCCceE
Confidence            4699999999999999999999864  8999999875431 111111000000  1123456667778888887765322


Q ss_pred             c-c-----Cccc-cceehhHHHHHHHHH---cCCE--------------------EEEec---------CC---------
Q psy10545         86 K-I-----FSGY-YSICSKHLNSYLIRA---LGQQ--------------------WNLSS---------PH---------  117 (1428)
Q Consensus        86 ~-~-----~~~Y-~~~~~~~~~~~~~~~---~~~~--------------------~~~~~---------~~---------  117 (1428)
                      . .     +.+| .+++...|.+.|.+.   .|.+                    +.+..         ..         
T Consensus       114 v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIg  193 (450)
T PLN00093        114 VDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIG  193 (450)
T ss_pred             EEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEE
Confidence            1 1     2344 478999999988762   1111                    11100         00         


Q ss_pred             --C----------CCc-e----Ee---------eecccCC------CCCCce-EEEEccCCCCcEEEEEeeecCCCCCCH
Q psy10545        118 --G----------LDI-P----II---------MDATVNQ------KNDEYH-FIYTLPLTPNSLMIEDTRYTKKPFLKI  164 (1428)
Q Consensus       118 --g----------~~~-~----~~---------MD~r~~~------~~~~~~-F~Y~lP~~~~~~liE~T~~~~~~~~~~  164 (1428)
                        |          ... .    .-         |+|..+.      .+-.+. |.++.|.++ ++-|--=.+... . +.
T Consensus       194 ADG~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~~-~-~~  270 (450)
T PLN00093        194 ADGANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVNK-P-AI  270 (450)
T ss_pred             cCCcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccCC-C-Ch
Confidence              1          110 0    00         1111000      000122 568999984 444543122222 2 44


Q ss_pred             HHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh
Q psy10545        165 DMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  241 (1428)
Q Consensus       165 ~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~  241 (1428)
                      ..|.+.+..++... +...++++.|.+.||+......  ...+++-+|=|||+++|.||-.+..+.+.+...|+.+.
T Consensus       271 ~~~~~~l~~~~~~~-l~~~~~~~~~~~~ip~~~~~~~--~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~  344 (450)
T PLN00093        271 KKYQRATRNRAKDK-IAGGKIIRVEAHPIPEHPRPRR--VRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV  344 (450)
T ss_pred             HHHHHHHHHHhhhh-cCCCeEEEEEEEEcccccccce--eCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHH
Confidence            55666666554332 2335678889999999543111  24678899999999999999988888887776666664

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.92  E-value=1.3e-08  Score=124.75  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             ceeeecCc----hHHHHHHHHHHHHH----cC--cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        922 GIWFPKGG----VGALIKALIKLFQN----LG--GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       922 g~~~~~gG----~~~l~~~L~~~l~~----~G--~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      +.+.+.+|    ...++..|++.+++    .|  ++|+++++|++|..++++.+.|.+.+| ++.||.||+|++.+..
T Consensus       198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            45556432    36789999999998    78  789999999999988666688988888 7999999999998754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.91  E-value=8.2e-09  Score=125.31  Aligned_cols=65  Identities=25%  Similarity=0.455  Sum_probs=53.8

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...+.+.|.+.+++.|++|+++++|++|..++++ +.|.+.+| ++.||.||+|++.+.
T Consensus       137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcch
Confidence            34445444   4788999999999999999999999999887776 56878777 799999999998864

>KOG2820|consensus

Probab=98.91  E-value=1.4e-08  Score=111.17  Aligned_cols=63  Identities=22%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      .+-..++...+++.|+.++.+..|+.+...  ++..+.|.|.+|..|.|+.+|+|+++|...  +++
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~  217 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLP  217 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcC
Confidence            445677888889999999999999999853  455688999999999999999999998543  655

>PRK06184 hypothetical protein; Provisional

Probab=98.89  E-value=1.2e-07  Score=119.04  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +-+.|.+.+.+.|++|+++++|++|..+++.+ .|++   .+++++.||+||.|.+.....++.++.
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi  176 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGV-TARVAGPAGEETVRARYLVGADGGRSFVRKALGI  176 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE-EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCC
Confidence            44567777888899999999999998877763 3444   566789999999999999888877763

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.89  E-value=1.6e-08  Score=113.31  Aligned_cols=59  Identities=12%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC--eEEEEEecC-----------CcEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN--KVNKVHLKN-----------GQIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~--~v~~V~~~~-----------G~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+.+.|++|+.++.|+++..+++  ++.+|.++.           ..++.|+.||.|++....
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~  171 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE  171 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence            45677788888889999999999999998877  688887642           247899999999975543

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06185 hypothetical protein; Provisional

Probab=98.88  E-value=1e-07  Score=116.65  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe--cCCc-EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL--KNGQ-IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~--~~G~-~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+.+.|.+.+.+. |++++.+++|+++..+++++++|++  .+|+ ++.||.||.|.|.....++.++.
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi  177 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGL  177 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCC
Confidence            4556666666654 7999999999999998888766654  4664 79999999999998877766653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.88  E-value=1.3e-08  Score=114.57  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-eEEEEEecC-----------CcEEEcCEEEEcCCHHHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN-KVNKVHLKN-----------GQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~-~v~~V~~~~-----------G~~i~ad~VV~A~~~~~~~~  991 (1428)
                      ..+...|.+.+.+.|++|++++.|.++..+++ ++.+|.+..           ..++.|+.||.|++......
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~  176 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV  176 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence            56777888888899999999999999988766 777776532           24789999999998665443

>PRK09126 hypothetical protein; Provisional

Probab=98.88  E-value=2e-08  Score=122.27  Aligned_cols=62  Identities=23%  Similarity=0.374  Sum_probs=48.3

Q ss_pred             HHHHHHHHH-HHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        933 LIKALIKLF-QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       933 l~~~L~~~l-~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      +.+.|.+.+ ++.|++|+++++|+++..+++. +.|++++|+++.||.||.|.|.....++.++
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g  174 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLVAADSRFSATRRQLG  174 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence            334444444 3468999999999999877765 5688888999999999999998777766664

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.88  E-value=1.2e-08  Score=123.56  Aligned_cols=57  Identities=19%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...+++.|.+.+++.|++++.+++|++|..++++ +.|++++| ++.+|.||+|++.+.
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence            3578888888889999999999999999887776 45777776 799999999998763

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.87  E-value=1.4e-08  Score=124.70  Aligned_cols=66  Identities=20%  Similarity=0.352  Sum_probs=55.1

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...++..|.+.++++|++|+++++|++|..+++++++|+++++ ++.||+||+|++++.
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            44555443   4678899999999999999999999999988888777888766 799999999999874

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.87  E-value=9.1e-08  Score=116.04  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+.+ .|++++++++|++|..++++ +.|++.+|+++.||.||.|.|....+++.++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~  170 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADGANSKVRELLSI  170 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecCCChHHHHHcCC
Confidence            5677888888887 49999999999999887776 56778888889999999999988777666653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.86  E-value=2.5e-08  Score=125.37  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CC--cEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G--~~i~ad~VV~A~~~~~  988 (1428)
                      ..++.++++.+.++|++|+++++|++|..+++++++|++.   +|  .++.|+.||+|++++.
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            5678888888999999999999999999988888888763   23  3789999999999885

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.86  E-value=1.5e-08  Score=125.37  Aligned_cols=64  Identities=20%  Similarity=0.289  Sum_probs=51.4

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      |.+.+.+|   ...++..|++.+++.|++|+.+++|++|.. ++ .+.|++++| ++.||+||+|++.+.
T Consensus       171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~~~v~t~~g-~v~A~~VV~Atga~s  237 (460)
T TIGR03329       171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-PAVVRTPDG-QVTADKVVLALNAWM  237 (460)
T ss_pred             EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-ceEEEeCCc-EEECCEEEEcccccc
Confidence            45555554   467899999999999999999999999974 33 356888877 699999999998763

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK05868 hypothetical protein; Validated

Probab=98.83  E-value=3.8e-07  Score=109.58  Aligned_cols=52  Identities=8%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             HcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        943 NLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..|++++++++|++|..++++ +.|++++|+++.||.||-|-|.....++.+.
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S~vR~~~~  167 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHSNVRRLVF  167 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence            358999999999999876665 6688899999999999999999888887764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.82  E-value=2.7e-07  Score=112.15  Aligned_cols=228  Identities=14%  Similarity=0.051  Sum_probs=131.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccc-ccccccccc--CccCccEEEcCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQ-YMLIKPLIT--YSWPSYQVKFPK   82 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~-~~~~~~~~~--~~w~~~~~~~~~   82 (1428)
                      ..+|++|||||++|+++|+.|++.  +.+|+|||+.+.. ..++++++..-...+. .+.++.+..  ..|....++..+
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   83 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT   83 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence            468999999999999999999986  4899999999766 5678887743111111 122333332  245566666544


Q ss_pred             Cccc--------------cCccccceehhHHHHHHHHH---cC----------------CEEEEe--------cCC----
Q psy10545         83 FNRK--------------IFSGYYSICSKHLNSYLIRA---LG----------------QQWNLS--------SPH----  117 (1428)
Q Consensus        83 ~~~~--------------~~~~Y~~~~~~~~~~~~~~~---~~----------------~~~~~~--------~~~----  117 (1428)
                      ....              -++.| .+...++.+.+.+.   .+                ..+.++        ...    
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~g~-~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A  162 (388)
T PRK07494         84 GRLIRAPEVRFRAAEIGEDAFGY-NIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA  162 (388)
T ss_pred             CCCCCCceEEEcHHhcCCCccEE-EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence            2211              01233 47778887777652   11                011110        000    


Q ss_pred             -C----------C--------CceEeeecccCC--C--------CCCceEEEEccCCCCcEEEEEe-eecC---CCCCCH
Q psy10545        118 -G----------L--------DIPIIMDATVNQ--K--------NDEYHFIYTLPLTPNSLMIEDT-RYTK---KPFLKI  164 (1428)
Q Consensus       118 -g----------~--------~~~~~MD~r~~~--~--------~~~~~F~Y~lP~~~~~~liE~T-~~~~---~~~~~~  164 (1428)
                       |          .        ..++..+++.+.  .        .+|  +++.+|+.+++.-+..+ ....   ...++.
T Consensus       163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g--~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~  240 (388)
T PRK07494        163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGG--PFTQVPLPGRRSSLVWVVRPAEAERLLALSD  240 (388)
T ss_pred             cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCC--cEEEEECCCCcEEEEEECCHHHHHHHHcCCH
Confidence             1          0        123333433221  0        023  34556776665433322 2111   012355


Q ss_pred             HHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        165 DMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       165 ~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      +++.+.+.+++.+. +...+ ......++|+..... ... ..++.-+|=|+..+||.+|+.+..+.+.|..+++.|..
T Consensus       241 ~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~l~~~~~-~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~  316 (388)
T PRK07494        241 AALSAAIEERMQSM-LGKLT-LEPGRQAWPLSGQVA-HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED  316 (388)
T ss_pred             HHHHHHHHHHHhhh-cCCeE-EccCCcEeechHHHH-HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence            66777776665442 11111 123456778865422 112 46899999999999999999999999999999999964

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.82  E-value=1.1e-07  Score=116.03  Aligned_cols=63  Identities=22%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +.+.|.+.+.+. |++|+++++|++|..+++. +.|++++|+++.||.||.|-|....+++.++.
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~  176 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVVGADGANSWLRRQMDI  176 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEEEeCCCCChhHHHcCC
Confidence            445566666553 6999999999999887776 56888899999999999999988777766653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.80  E-value=4.9e-07  Score=109.77  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-cCCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-KNGQ--IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~~G~--~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+.+.|.+.+.+.|++++++++|++|...++....|++ .+|+  ++.||.||-|-|.....++.++.
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~  171 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA  171 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence            34456666667789999999999999763333355666 4674  68999999999999888877653

>PRK08244 hypothetical protein; Provisional

Probab=98.78  E-value=2.8e-07  Score=115.43  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCC-cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNG-QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G-~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      .+-+.|.+.+++.|++|+++++|++|..+++++ .|++  .+| +++.||.||.|.+.....++.++
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg  166 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGV-EVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG  166 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeE-EEEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence            344556667777899999999999998887764 3444  356 47999999999999888777765

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.76  E-value=1.3e-06  Score=105.86  Aligned_cols=62  Identities=18%  Similarity=0.295  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      +-..|.+.+.+. |++|+++++|++++.+++. +.|++++|++++||.||.|.|.....++.++
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~lvIgADG~~S~vR~~~g  174 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVIGADGANSQVRQLAG  174 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-EEEEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence            444555555443 6899999999999988776 5688899999999999999999888887665

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.76  E-value=5.4e-07  Score=105.90  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=51.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEe--CCeEEcccccccCCchHHHHHHHHh
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQ--DGFIFDAGPTVITDPNSIKLLFDLS  780 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~--~G~~~d~G~~~i~~~~~~~~l~~~l  780 (1428)
                      ..++-|||+|+|+|+||.+|-+.    |.+|+|||+.+.+||.+.+...  .||.+-.|...-.....+.++++.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~I   77 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSI   77 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhC
Confidence            35788999999999999999986    5689999999999998877653  5777655554432233444555443

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.76  E-value=6.2e-08  Score=119.30  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCC--cEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G--~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...++.+|.+.+++.|++|+++++|++|..++++.+.|++   .+|  .++.||+||+|++.+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            45566665   4789999999999999999999999999886543244442   334  3689999999998875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.75  E-value=6.9e-08  Score=116.24  Aligned_cols=53  Identities=21%  Similarity=0.157  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...++..|.+.+.+. |++|+.+++|++|..  +   .|++.+| .+.||+||+|++++.
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCC-cEEeCEEEECCCCCh
Confidence            356788888888775 999999999999963  2   5777777 578999999998864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.72  E-value=9.5e-08  Score=114.57  Aligned_cols=66  Identities=24%  Similarity=0.339  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-c-CC--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-K-NG--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~-~G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++.|++|+++++|+.+..+++++..+.. . +|  +++.||.||-|-|.....++.++.
T Consensus       111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~  180 (356)
T PF01494_consen  111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI  180 (356)
T ss_dssp             HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred             HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence            457778889999999999999999999988887443332 2 34  368999999999999888877653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.71  E-value=1.8e-07  Score=116.34  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             ecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCHHH
Q psy10545        926 PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       926 ~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~~~  988 (1428)
                      +.++...+...|.+.+++.|++|+++++|++|..+++++++|.+.  +|  ..+.|+.||+|++...
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            345567789999999999999999999999999888888888763  33  3689999999998543

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.70  E-value=2.4e-07  Score=114.11  Aligned_cols=68  Identities=25%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIINT  989 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~  989 (1428)
                      +.+.+.+|   ...++++|.+.+++.| ++|+++++|++|..++++.+.|++   .+|+  ++.|++||+|++.+..
T Consensus       171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            44555554   4789999999999987 799999999999985543244443   3453  6899999999988753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.68  E-value=1.6e-06  Score=105.37  Aligned_cols=226  Identities=17%  Similarity=0.232  Sum_probs=127.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-C---C-----------------ceeEEeccccCccccccc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-K---N-----------------HIWSFHQTVLSSSQYMLI   65 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~---~-----------------~tw~~w~~~~~~~~~~~~   65 (1428)
                      ..||++||||||||+++|+.|++.  +.+|+|||+.+.. .   .                 +.||+|+.-. +....++
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~   80 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQH--GFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQ-AMRSHPY   80 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcC--CCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhh-hhhCccc
Confidence            469999999999999999999886  4899999987532 1   0                 3588886522 1111223


Q ss_pred             cccccCccCccEEEcCCCcccc-CccccceehhHHHHHHHHHc----CCEE----------------EEe--------cC
Q psy10545         66 KPLITYSWPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRAL----GQQW----------------NLS--------SP  116 (1428)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~-~~~Y~~~~~~~~~~~~~~~~----~~~~----------------~~~--------~~  116 (1428)
                      ..+....|....+.+....... ...| +++..+|.+.+.+..    |..+                .+.        ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~  159 (391)
T PRK08020         81 RRLETWEWETAHVVFDAAELKLPELGY-MVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK  159 (391)
T ss_pred             ceEEEEeCCCCeEEecccccCCCccEE-EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence            3344445666666554322222 2344 688888888876521    2111                110        00


Q ss_pred             C-----C----------C--------CceEeeecccCCCCCCce---E-----EEEccCCCCcEEEEEeeecCCC-----
Q psy10545        117 H-----G----------L--------DIPIIMDATVNQKNDEYH---F-----IYTLPLTPNSLMIEDTRYTKKP-----  160 (1428)
Q Consensus       117 ~-----g----------~--------~~~~~MD~r~~~~~~~~~---F-----~Y~lP~~~~~~liE~T~~~~~~-----  160 (1428)
                      .     |          .        ......+.+.+....+..   |     ...+|+.+++..+=.  +.+..     
T Consensus       160 ~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~--~~~~~~~~~~  237 (391)
T PRK08020        160 LVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVW--YDSPARIRQL  237 (391)
T ss_pred             EEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEE--ECCHHHHHHH
Confidence            0     1          0        011112222221001111   1     134677666544311  21110     


Q ss_pred             -CCCHHHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHH
Q psy10545        161 -FLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAK  238 (1428)
Q Consensus       161 -~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~  238 (1428)
                       .++.+.+.+.+.+....   ...++.....+.+|+.... ..+. .++++-+|=|+..+||-.|-.+..+.+.|..+++
T Consensus       238 ~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~pl~~~~-~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~  313 (391)
T PRK08020        238 QAMSMAQLQQEIAAHFPA---RLGAVTPVAAGAFPLTRRH-ALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLD  313 (391)
T ss_pred             HCCCHHHHHHHHHHHhhh---hccceEeccccEeecceee-hhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHH
Confidence             12334444444443321   1223444456788886552 2122 4679999999999999999999999999999999


Q ss_pred             Hhhh
Q psy10545        239 YSIT  242 (1428)
Q Consensus       239 ~~~~  242 (1428)
                      .|.+
T Consensus       314 ~L~~  317 (391)
T PRK08020        314 VLVN  317 (391)
T ss_pred             HHHH
Confidence            9864

>PLN02661 Putative thiazole synthesis

Probab=98.68  E-value=2.4e-07  Score=106.28  Aligned_cols=41  Identities=34%  Similarity=0.524  Sum_probs=37.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++||+||+.|+++ |++|+|+|++..+||.+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            468999999999999999999986 89999999999988744

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.67  E-value=1.4e-07  Score=114.67  Aligned_cols=66  Identities=27%  Similarity=0.341  Sum_probs=52.7

Q ss_pred             ceeeecCch---HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        922 GIWFPKGGV---GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       922 g~~~~~gG~---~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      +.+.+.+|.   ..++..|++.+.+.| ..+..+++|..+..++ +++.|.+.+|+ +.||+||+|++.+..
T Consensus       144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            344444443   678999999999999 5666699999998774 67889999996 999999999988743

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.67  E-value=1.4e-07  Score=115.29  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      .+-+.|.+.+++.|++|+.+++|++|..+++++++|+ .+|+++.||.||.|.+....+.+.+
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l  170 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADGVNSILAEKL  170 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence            4455677778888999999999999998888766665 4566899999999998876555443

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.67  E-value=3e-06  Score=107.50  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEE-EEEecCCc-EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVN-KVHLKNGQ-IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~-~V~~~~G~-~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +-+.|.+.+.+. |++|+++++|+++..+++.+. .++..+|+ ++.||.||.|.|.....++.++.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~  193 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGL  193 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence            334556666664 689999999999998877633 23334554 68999999999988888777764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.65  E-value=2.1e-07  Score=113.70  Aligned_cols=66  Identities=20%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHH-cCcEEEeCceeeEEEEe-CCeEEEEE---ecCCc--EEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQN-LGGNLILNSQVISIYVN-NNKVNKVH---LKNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~-~~~v~~V~---~~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.++   ...+.++|.+.+.+ .|++|+++++|+.|..+ ++. +.|+   +.+|+  ++.||+||+|++.+.
T Consensus       172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            34455444   46788999988865 48999999999999877 554 4454   34453  689999999998876

>KOG1439|consensus

Probab=98.64  E-value=5e-06  Score=93.77  Aligned_cols=319  Identities=15%  Similarity=0.191  Sum_probs=180.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-------C--------------CeEEcccccccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-------D--------------GFIFDAGPTVITD  769 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-------~--------------G~~~d~G~~~i~~  769 (1428)
                      .|||||+|-|+.=..-+..|+..|.+|+.+|+++.-||-.+|.+.       +              .+.+|.=|..+..
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmA   83 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMA   83 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhc
Confidence            499999999999999999999999999999999999999888742       1              1233443443333


Q ss_pred             chHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHH-HHHHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545        770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDL-EKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS  848 (1428)
Q Consensus       770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  848 (1428)
                      .+.+..++-+-|  +..++++.+.+..+  ++.+|+.+.+|.+..+. ...+..++  +...+.+|+.....+.+..-. 
T Consensus        84 n~~Lvk~Li~T~--V~~YL~fk~i~gsf--v~~~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~~~-  156 (440)
T KOG1439|consen   84 NGELVKILIHTG--VTRYLEFKSISGSF--VYKKGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEEDPK-  156 (440)
T ss_pred             cchHHHHHHHhc--hhhheEEEeecceE--EEECCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhccc-
Confidence            333344444445  56778888877643  56677888888764332 22222221  344455555554443332100 


Q ss_pred             hcccCcccHHHHHHhhHHHHhhcc-cCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchh---HHHHHHHHhc----c
Q psy10545        849 FASKSFLTINDMLFILPKLIKIKA-WKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTS---SIYTLIHALE----Y  919 (1428)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s---~~~~~~~~~~----~  919 (1428)
                             .          ...++. ..++.+++.+++..+....+.. ....+...+--+.+   .+-.+..|..    .
T Consensus       157 -------~----------~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y  219 (440)
T KOG1439|consen  157 -------T----------WQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY  219 (440)
T ss_pred             -------c----------ccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc
Confidence                   0          001111 2266777777655444433321 11111111111111   1122222221    1


Q ss_pred             ccc-eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCC
Q psy10545        920 EWG-IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQY  997 (1428)
Q Consensus       920 ~~g-~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~  997 (1428)
                      ... -.+|..|.++|++.+++.-.-.|++..+|.++.+|.. +++++.+|...+ +...++.||+-....          
T Consensus       220 g~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~-~v~~~k~vi~dpSY~----------  288 (440)
T KOG1439|consen  220 GKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG-EVAKCKKVICDPSYF----------  288 (440)
T ss_pred             CCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC-ceeecceEEecCccc----------
Confidence            111 2488999999999999988888999999999999998 667767776543 466777777654221          


Q ss_pred             CCChhHHHHHhhcCCCCceEEEEEeecCCcCCC---cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC
Q psy10545        998 AFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL---AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074 (1428)
Q Consensus       998 ~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap 1074 (1428)
                        | ...+.+.+      ++.....++.+.+..   ....+.+++.            +......++++.-|. ....+|
T Consensus       289 --~-~~~k~vg~------viR~iCIl~hpi~~t~~~~S~qiiipq~------------q~~rksdi~v~~~ss-~~~vcp  346 (440)
T KOG1439|consen  289 --P-QKVKKVGQ------VIRAICILSHPIPNTNDAESAQIIIPQF------------QVGRKSDIYVFGLSS-AHNVCP  346 (440)
T ss_pred             --h-HHHHhhhh------eeeeeEEecCCcCcCCccceeeEEechh------------hhCCcccEEEEEecc-CCCcCC
Confidence              1 11112211      222223334443322   1223344321            123445666666554 457799


Q ss_pred             CCccEEEEEEec
Q psy10545       1075 TGCSTFYALIPV 1086 (1428)
Q Consensus      1075 ~G~~~l~v~~~~ 1086 (1428)
                      +|+.+..+.+..
T Consensus       347 eG~yia~vsT~~  358 (440)
T KOG1439|consen  347 EGKYIAYVSTTV  358 (440)
T ss_pred             CceEEEEEEecc
Confidence            999887777644

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.64  E-value=5.9e-07  Score=112.14  Aligned_cols=57  Identities=25%  Similarity=0.319  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++++|.+.  +|  .++.|+.||+|++..
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~  250 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF  250 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence            4688899999999999999999999999888888887663  43  358899999999754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.62  E-value=5.6e-08  Score=100.40  Aligned_cols=143  Identities=21%  Similarity=0.375  Sum_probs=97.5

Q ss_pred             hHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHh
Q psy10545        298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ  377 (1428)
Q Consensus       298 ~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~  377 (1428)
                      .+.+|++.-.+..+.|+||+|+||.|+++|..||++|++|+|+|++-.+                |||+|++-..     
T Consensus        17 I~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~----------------GGG~w~GGml-----   75 (262)
T COG1635          17 ITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF----------------GGGIWGGGML-----   75 (262)
T ss_pred             HHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc----------------CCcccccccc-----
Confidence            3444444445557789999999999999999999999999999999887                8999887543     


Q ss_pred             cCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc
Q psy10545        378 YNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI  457 (1428)
Q Consensus       378 ~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~  457 (1428)
                       .+  ++.+-++                   ....++++        .+.+.    .....+|+.+...|-..|..++.+
T Consensus        76 -f~--~iVv~~~-------------------a~~iL~e~--------gI~ye----~~e~g~~v~ds~e~~skl~~~a~~  121 (262)
T COG1635          76 -FN--KIVVREE-------------------ADEILDEF--------GIRYE----EEEDGYYVADSAEFASKLAARALD  121 (262)
T ss_pred             -cc--eeeecch-------------------HHHHHHHh--------CCcce----ecCCceEEecHHHHHHHHHHHHHh
Confidence             11  1111100                   00001111        11111    122357889999999999999999


Q ss_pred             CC-eEEecceEEEEe--CC-e---EEE-----------cCCcEEEeeEEEecCCCC
Q psy10545        458 NN-FLFNNKTVEIIT--PT-S---IRI-----------NNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       458 ~~-~~~~~~~v~~i~--~~-~---v~l-----------~~g~~~~a~lvI~AdG~~  495 (1428)
                      +| .+++...|+++.  .+ .   |.+           -|--.++|++||+|.|-.
T Consensus       122 aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd  177 (262)
T COG1635         122 AGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD  177 (262)
T ss_pred             cCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence            99 788888888874  22 1   111           144579999999999965

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.62  E-value=6.3e-07  Score=112.55  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             eecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEc-CEEEEcCCHHHHH
Q psy10545        925 FPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDA-DIIVSNADIINTY  990 (1428)
Q Consensus       925 ~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~a-d~VV~A~~~~~~~  990 (1428)
                      +..+| ..|+..|.+.+++.|++|+++++|+++..++++|++|... +|.  .+.+ +.||+|++-..-.
T Consensus       212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence            44455 8999999999999999999999999998878899998653 443  3556 5799998776543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.62  E-value=3.1e-06  Score=108.03  Aligned_cols=64  Identities=14%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcCc--EEEeCceeeEEEEeCC--eEEEEEec------CC--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        933 LIKALIKLFQNLGG--NLILNSQVISIYVNNN--KVNKVHLK------NG--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       933 l~~~L~~~l~~~G~--~V~~~~~V~~I~~~~~--~v~~V~~~------~G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +-+.|.+.+.+.|+  +++.+++|+++..++.  ..+.|++.      +|  +++.||+||-|-|.....++.++.
T Consensus       143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi  218 (634)
T PRK08294        143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGR  218 (634)
T ss_pred             HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCC
Confidence            45667777777664  7889999999987642  22445553      35  579999999999999999888764

>PRK07236 hypothetical protein; Provisional

Probab=98.61  E-value=4.6e-07  Score=109.82  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=41.9

Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      +.+|+++++|++|..+++. +.|++++|+++.||.||.|-|.....++.+
T Consensus       112 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S~vR~~l  160 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRSTVRAQL  160 (386)
T ss_pred             CcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCchHHHHh
Confidence            4689999999999887776 568889999999999999998887777665

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.60  E-value=3.6e-06  Score=102.20  Aligned_cols=229  Identities=14%  Similarity=0.115  Sum_probs=131.9

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--C-----CceeEEeccccCccc-cccccccc---cCccCccEE
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--K-----NHIWSFHQTVLSSSQ-YMLIKPLI---TYSWPSYQV   78 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~-----~~tw~~w~~~~~~~~-~~~~~~~~---~~~w~~~~~   78 (1428)
                      ||+||||||||+++|+.|++.  +.+|+|+|+.+..  .     .++.+++..-...+. .+.++.+.   ...|....+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS--GLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence            899999999999999999996  4899999999764  1     255665543111111 11223332   235666666


Q ss_pred             EcCCCccc--c-------CccccceehhHHHHHHHHH---cC-CE----------------EEEec--------------
Q psy10545         79 KFPKFNRK--I-------FSGYYSICSKHLNSYLIRA---LG-QQ----------------WNLSS--------------  115 (1428)
Q Consensus        79 ~~~~~~~~--~-------~~~Y~~~~~~~~~~~~~~~---~~-~~----------------~~~~~--------------  115 (1428)
                      +.++....  .       ++....+...+|.+.+.+.   .| ..                +.+..              
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Confidence            65542211  1       1122467888888877662   11 11                11100              


Q ss_pred             --CC-------CC--------CceEeeecccCCCCCC--------ceEEEEccCCCCcEEEEEeeecCC----CCCCHHH
Q psy10545        116 --PH-------GL--------DIPIIMDATVNQKNDE--------YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDM  166 (1428)
Q Consensus       116 --~~-------g~--------~~~~~MD~r~~~~~~~--------~~F~Y~lP~~~~~~liE~T~~~~~----~~~~~~~  166 (1428)
                        .|       +.        ...+..++..+.....        -.+++.+|+++++..+..+.-.+.    ...+.+.
T Consensus       159 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (385)
T TIGR01988       159 DGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEE  238 (385)
T ss_pred             CCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHH
Confidence              00       00        0111122322211000        124677899999888877654321    1124455


Q ss_pred             HHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        167 LKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       167 ~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      +.+.+.+++...  ...-....+....||.......-..++++-+|=|+++++|.+|..+..+.+.|..+++.|..
T Consensus       239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~  312 (385)
T TIGR01988       239 FLAELQRAFGSR--LGAITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLED  312 (385)
T ss_pred             HHHHHHHHHhhh--cCceEeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHH
Confidence            555565554332  11112235667888865422111246899999999999999999999999999999999853

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK10015 oxidoreductase; Provisional

Probab=98.59  E-value=1.4e-07  Score=115.10  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN  992 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~  992 (1428)
                      .+-+.|.+.+++.|++++.+++|++|..+++++.+|.+ ++.++.||.||.|.+....+.+
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~  168 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSMLGR  168 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhhhc
Confidence            45556778888889999999999999988888777765 4458999999999988665543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.58  E-value=4.3e-07  Score=111.46  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIINT  989 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~~  989 (1428)
                      +...+.+.|.+.+++.|++|+++++|+++..++++|++|...   +|+  ++.|+.||+|++-...
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            557889999999999999999999999999999999999876   454  5789999999987653

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08013 oxidoreductase; Provisional

Probab=98.58  E-value=6.6e-07  Score=108.93  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+-+.|.+.+.+. |++++++++|++|+.+++. +.|++.+|+++.||.||-|-|....+++.++.
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~  176 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLVVGADGANSWLRNKADI  176 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCC
Confidence            4566777777765 7999999999999877765 56778899999999999999999888877754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.57  E-value=2.9e-07  Score=110.67  Aligned_cols=58  Identities=17%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-----EEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-----IFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-----~i~ad~VV~A~~~~~~  989 (1428)
                      ..|+-..+..+.++|.++++.++|+++..+++ +++|++.|.+     ++.|+.||.|+|||.-
T Consensus       164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         164 ARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             HHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            46777888888999999999999999999999 8999986542     5899999999999853

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.55  E-value=1.6e-06  Score=110.09  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC--Cc-EEEcC-EEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN--GQ-IFDAD-IIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~--G~-~i~ad-~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++++|.+.+  ++ .+.++ .||+|++...
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            67889999999999999999999999999999988887743  33 46775 7999987664

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.54  E-value=6.4e-07  Score=109.45  Aligned_cols=65  Identities=17%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+.+.|++|+.+++|++|..++++ +.|++.+|+++.||.||.|.+.....+++++.
T Consensus       112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~  176 (405)
T PRK05714        112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLVVAADGANSAVRRLAGC  176 (405)
T ss_pred             HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence            356667777788889999999999999887776 56888899899999999999998888877764

>PRK07538 hypothetical protein; Provisional

Probab=98.54  E-value=1.3e-05  Score=98.24  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHH-cC-cEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQN-LG-GNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~-~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+-+.|.+.+.+ .| .+|+++++|+++..++++ +.+.+.++     +++.||.||-|-|.....++.+..
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~  173 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP  173 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcC
Confidence            455556666654 36 469999999999877665 23333332     489999999999998888776653

>PRK07121 hypothetical protein; Validated

Probab=98.53  E-value=1.5e-06  Score=108.58  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecC-Cc--EEEc-CEEEEcCCHHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKN-GQ--IFDA-DIIVSNADIIN  988 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~-G~--~i~a-d~VV~A~~~~~  988 (1428)
                      +...+.+.|.+.+++.|++|+++++|++|..++ +++++|...+ ++  .+.| +.||+|++...
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            356789999999999999999999999998874 6888887643 32  5788 99999998654

>KOG2844|consensus

Probab=98.53  E-value=2.8e-07  Score=108.98  Aligned_cols=68  Identities=25%  Similarity=0.384  Sum_probs=60.8

Q ss_pred             ccceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        920 EWGIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       920 ~~g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      .++.|.|..|   ...++.+|+..+.+.|+.|..|++|++|..+.++..+|+|.-| .+++.+||.|++.|.
T Consensus       173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            3466777666   4789999999999999999999999999999888889999999 799999999999986

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.53  E-value=6.3e-07  Score=109.53  Aligned_cols=65  Identities=26%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+.+.|++|+++++|++|..+++. +.|++.+|+++.||.||.|.+.....++.++.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~  175 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLLVAADGARSKLRELAGI  175 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEEcCCCChHHHHHcCC
Confidence            467788888888889999999999999887776 56778889899999999999988777666553

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.52  E-value=1.6e-06  Score=110.44  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...++..|++.++++|++|+.+++|++|..+  ++++++|++   .+|+  ++.||.||+|++++.
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            4678899999999999999999999999887  467777765   2344  579999999999984

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=98.52  E-value=1e-06  Score=97.00  Aligned_cols=179  Identities=15%  Similarity=0.174  Sum_probs=95.7

Q ss_pred             eeEEEecCCCCCCC-------CCcceEEEEEEEEEe-cCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEe
Q psy10545        485 ANCIIDGRGLKNSQ-------FDGIYQIFLGQQWNL-SSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRY  556 (1428)
Q Consensus       485 a~lvI~AdG~~S~~-------~~~~~q~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~  556 (1428)
                      |+++|.|||.-|.-       ......+|+|..++- +.|..+-..+++.      +.++-.+|-+--.+.++++.  +.
T Consensus         2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~------~~~pil~YqI~~~etR~Lvd--vp   73 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILG------KPGPILLYQISSNETRVLVD--VP   73 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEc------CCCcEEEEEcCCCceEEEEE--eC
Confidence            78999999998761       123567888988743 3343332222211      12333344433333344443  23


Q ss_pred             ccC-CCCCHHHHHHHHHHHHH-HcCCcc----ce-eeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHH
Q psy10545        557 TKK-PFLKIDMLKKSIKDYAI-KNRWKL----KN-IEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIA  629 (1428)
Q Consensus       557 ~~~-~~~~~~~~~~~l~~~~~-~~~~~~----~~-~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a  629 (1428)
                      ..+ +..+..++++.+.+.+. ...-.+    .+ +....-.+.|-....+.....++++++|||+++.||+||+|+.-|
T Consensus        74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVA  153 (276)
T PF08491_consen   74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVA  153 (276)
T ss_pred             CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhH
Confidence            331 22223355554443321 111111    11 111122355665555554455899999999999999999996544


Q ss_pred             HHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHHHHhHHHHHHH
Q psy10545        630 IQLAENIAKYSITTNQIN-STVLFKLVKKFIINHQKKQRFFCM  671 (1428)
Q Consensus       630 ~~la~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  671 (1428)
                      ...+..+.+.+....+.+ ...+.+..++|.++|+........
T Consensus       154 l~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNi  196 (276)
T PF08491_consen  154 LNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINI  196 (276)
T ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHH
Confidence            444444444444323443 455777888888888776654333

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.51  E-value=1.1e-06  Score=107.03  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      ..+.+.|.+.+.+.| ++++++++|++|..++++ +.|++.+|+++.||.||.|.+.....+..+
T Consensus       109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~  172 (396)
T PRK08163        109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGCDGVKSVVRQSL  172 (396)
T ss_pred             HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEECCCcChHHHhhc
Confidence            346667777777665 899999999999877766 557788898999999999999987776554

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.49  E-value=4e-06  Score=104.19  Aligned_cols=56  Identities=21%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++++++++|++|..++++ +.|++.+|+++.+|.||++++..
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCC
Confidence            567788899999999999999999999877665 45667788899999999998653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.49  E-value=9.8e-07  Score=108.31  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecC-C--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKN-G--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~-G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+.+. |++++++++|++|..+++. +.|++.+ +  .++.||.||.|.|.....++.++.
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~  189 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGI  189 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCC
Confidence            34667777777665 6999999999999887776 4566653 3  369999999999988877766653

>PRK06834 hypothetical protein; Provisional

Probab=98.48  E-value=4.4e-07  Score=112.50  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      .+-+.|.+.+++.|++|+++++|++|..+++. +.|++.+|+++.||+||.|.+.....++.++
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~~vVgADG~~S~vR~~lg  163 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQYLVGCDGGRSLVRKAAG  163 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence            45566778888889999999999999988776 5577778888999999999998877776665

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.47  E-value=2.3e-06  Score=105.69  Aligned_cols=59  Identities=22%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec--CCc--EEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK--NGQ--IFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~--~G~--~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++.  +++  .+.++.||+|++....
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            568899999999999999999999999985 4677777663  443  4689999999986553

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.47  E-value=1.9e-06  Score=107.60  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---Cc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---GQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...++..+++.+.++|++|+.+++|++|..+++. ++|++.+   |+  ++.|+.||.|+|++.
T Consensus       154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            3567778888899999999999999999887765 5666543   53  689999999999975

>TIGR00275 flavoprotein, HI0933 family

Probab=98.46  E-value=1.9e-06  Score=104.34  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=48.1

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ....+.+.|.+.+++.|++|+++++|++|..+++. +.|++ +++++.+|.||+|++..
T Consensus       103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VIlAtG~~  159 (400)
T TIGR00275       103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVILATGGL  159 (400)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEEECCCCc
Confidence            45788999999999999999999999999776664 66776 45689999999999864

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.45  E-value=1.9e-06  Score=107.77  Aligned_cols=57  Identities=12%  Similarity=0.105  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~~~  988 (1428)
                      ..++..+++.+.++|++++.+++|++|..+++. +.|++.++    .++.|+.||.|+|++.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            667788888899999999999999999887664 66776554    3589999999999874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.45  E-value=9.9e-07  Score=107.97  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=39.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +..++|+|||||++||+||.+|.+.|++|+|+|+++.+||...
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~   50 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV   50 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence            3468999999999999999999999999999999999998653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.44  E-value=2e-06  Score=104.88  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        933 LIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       933 l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      +.+.|.+.+.+ .|++|+++++|++|..++++ +.|++++|+++.+|.||.|.+....+++.++
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~  176 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRLLVAADGSHSALREALG  176 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence            33455555554 47999999999999877776 5588888888999999999998876666554

>PRK06753 hypothetical protein; Provisional

Probab=98.44  E-value=1.4e-06  Score=105.17  Aligned_cols=62  Identities=16%  Similarity=0.273  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+.+.|.+.++  +.+|+++++|++|..++++ +.|++++|+++.+|.||.|-|.....++.+..
T Consensus        99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~  160 (373)
T PRK06753         99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKVRQSVNA  160 (373)
T ss_pred             HHHHHHHHhCC--CceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHHHHHhCC
Confidence            34445555443  3689999999999877766 66788899999999999999998888877653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.43  E-value=1.8e-06  Score=104.65  Aligned_cols=65  Identities=12%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+...|.+.+.+.|+++++++.++++...++....|++. +|+  +++||.||-|-|....+++.++.
T Consensus       104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~  171 (390)
T TIGR02360       104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA  171 (390)
T ss_pred             HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence            455567777777799999999988886533323567775 775  68999999999999888877653

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07588 hypothetical protein; Provisional

Probab=98.42  E-value=2.2e-05  Score=95.47  Aligned_cols=231  Identities=15%  Similarity=0.089  Sum_probs=128.0

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCccc-cccccccccC--ccCccEEEcCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQ-YMLIKPLITY--SWPSYQVKFPKF   83 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~-~~~~~~~~~~--~w~~~~~~~~~~   83 (1428)
                      .|++|||||+|||++|+.|++.+  .+|+|+|+.+..  ..+.|++|..-..... -++++.+..+  .|.++.++..++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g   78 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG   78 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence            38999999999999999999864  799999998766  4688999975221111 1223444433  467777776543


Q ss_pred             ccc--c---------CccccceehhHHHHHHHHHcCC------------------EEEEecCC-------------CC--
Q psy10545         84 NRK--I---------FSGYYSICSKHLNSYLIRALGQ------------------QWNLSSPH-------------GL--  119 (1428)
Q Consensus        84 ~~~--~---------~~~Y~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-------------g~--  119 (1428)
                      ...  +         ..+|..+...+|.+.+.+.+..                  .+.+....             |.  
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            321  1         2246678888898877653111                  11110000             10  


Q ss_pred             ---------Cc--e-----Eeeeccc----CCCCC-------CceEEEEccCCCCcEEEEEeeecCC--CCCCHHHHHHH
Q psy10545        120 ---------DI--P-----IIMDATV----NQKND-------EYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKS  170 (1428)
Q Consensus       120 ---------~~--~-----~~MD~r~----~~~~~-------~~~F~Y~lP~~~~~~liE~T~~~~~--~~~~~~~~~~~  170 (1428)
                               ..  .     ++..+..    +....       .-.++..+|+++++..+=.+.-.+.  +..+.+...+.
T Consensus       159 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (391)
T PRK07588        159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQL  238 (391)
T ss_pred             cchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHH
Confidence                     00  0     1111100    10000       0125677788877765433322221  22234455555


Q ss_pred             HHHHHHHcCCcce---eEE-EEEEEeec-CCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        171 IKDYAIKNRWKLK---NIE-REEIGSIP-IALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       171 l~~~l~~~g~~~~---~i~-~~E~g~iP-m~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      +++.....++...   +.. ..+....+ .... +.+.. ..+++-+|=|+..++|..|.....+.+.|..+++.|..
T Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~  315 (391)
T PRK07588        239 LRDQFGDVGWETPDILAALDDVEDLYFDVVSQI-RMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR  315 (391)
T ss_pred             HHHHhccCCccHHHHHHhhhcccchheeeeeee-ccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence            5555443333211   111 11111111 1101 11112 36788999999999999999999999999999999964

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.42  E-value=8e-07  Score=97.31  Aligned_cols=55  Identities=18%  Similarity=0.268  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.|.+.+++.|.+++++++|++|..++++ +.|++.+++++.||+||+|+|.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---S
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeec
Confidence            345556667777778889999999999999988 8999999988999999999974

...

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.41  E-value=5.2e-06  Score=105.39  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CCc-EEEc-CEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NGQ-IFDA-DIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G~-~i~a-d~VV~A~~~~~  988 (1428)
                      ...++..|.+.+++.|++|+++++|++|..+++++++|...  ++. ++.| +.||+|++.+.
T Consensus       216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            35688999999999999999999999999888888888663  332 4788 99999998875

>PTZ00367 squalene epoxidase; Provisional

Probab=98.41  E-value=1.8e-05  Score=98.98  Aligned_cols=35  Identities=31%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .++||||||||++|+++|+.|+++|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999999999999999975

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.40  E-value=1.5e-07  Score=98.45  Aligned_cols=145  Identities=22%  Similarity=0.322  Sum_probs=86.4

Q ss_pred             hHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHh
Q psy10545        298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ  377 (1428)
Q Consensus       298 ~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~  377 (1428)
                      .+.+|+..-.+..+.|++|+|+||.|+++|..||++|++|+|+|++..+           |-+.+|||+...        
T Consensus         4 I~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~-----------GGg~~~Gg~lf~--------   64 (230)
T PF01946_consen    4 IIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP-----------GGGMWGGGMLFN--------   64 (230)
T ss_dssp             HHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS------------BTTTTS-CTT----------
T ss_pred             HHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC-----------Cccccccccccc--------
Confidence            3455555555556789999999999999999999999999999999887           444444444322        


Q ss_pred             cCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc
Q psy10545        378 YNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI  457 (1428)
Q Consensus       378 ~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~  457 (1428)
                           ++.+-+.       .+.            .++++        .+.+.    .....+|+.+..++-..|..++.+
T Consensus        65 -----~iVVq~~-------a~~------------iL~el--------gi~y~----~~~~g~~v~d~~~~~s~L~s~a~~  108 (230)
T PF01946_consen   65 -----KIVVQEE-------ADE------------ILDEL--------GIPYE----EYGDGYYVADSVEFTSTLASKAID  108 (230)
T ss_dssp             ------EEEETT-------THH------------HHHHH--------T---E----E-SSEEEES-HHHHHHHHHHHHHT
T ss_pred             -----hhhhhhh-------HHH------------HHHhC--------CceeE----EeCCeEEEEcHHHHHHHHHHHHhc
Confidence                 1111111       000            01111        11111    123457888999999999999988


Q ss_pred             CC-eEEecceEEEEe--C-Ce---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545        458 NN-FLFNNKTVEIIT--P-TS---IRIN-----------NKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       458 ~~-~~~~~~~v~~i~--~-~~---v~l~-----------~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +| .+++...|+++-  . ..   |.++           |--+++|++||+|+|..+.
T Consensus       109 aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  109 AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence            98 788888898873  3 22   2221           2347999999999997643

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.40  E-value=4.1e-06  Score=102.36  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEE-ecCCc--EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVH-LKNGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~-~~~G~--~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.|.+.+++ .|++|+++++|++|..+++++++|. ..+|+  .+.|+.||+|++..
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            5678888888875 4999999999999988888888865 33454  58999999999864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=2.6e-06  Score=107.67  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+.+.|++|++++.++++..++|++++|...   +|+  .+.|+.||+|++...
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            5688888888888899999999999999999999998764   333  578999999998765

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.38  E-value=1.8e-06  Score=106.23  Aligned_cols=54  Identities=22%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      +...|.+.+++. |+++ +...|++|..+++++.+|.+.+|..+.|+.||+|+|.+
T Consensus       102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192        102 YRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             HHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            445566666655 6787 46779999999999999999999999999999999853

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.36  E-value=3.6e-06  Score=106.94  Aligned_cols=58  Identities=12%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|++++.|+++..++ ++|++|..   .+|+  .+.|+.||+|++...
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            4688899998988999999999999998875 78888864   3564  678999999998754

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.36  E-value=3.1e-05  Score=95.36  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             EEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh
Q psy10545        185 IEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  241 (1428)
Q Consensus       185 i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~  241 (1428)
                      +..++...+|+..... .+. .++++-+|=|+..+||..|..+..+.+.|..++..|.
T Consensus       312 ~~~~~~~~~~~~~~~~-~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~  368 (437)
T TIGR01989       312 VVDKSRAAFPLGLGHA-DEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALA  368 (437)
T ss_pred             eecccceeEEecccch-hhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHH
Confidence            3444557888865522 122 4689999999999999999999999999999998885

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=1.1e-05  Score=101.79  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~  989 (1428)
                      ...+...|.+.+++.|++|+++++|++|..++++|++|... +|+  .+.|+ .||+|++-..-
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            35688899999999999999999999999999999998763 453  46785 69999876554

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=1.2e-05  Score=101.57  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~  989 (1428)
                      ...+...|.+.+++.|++|+++++|++|..++++|++|... +|+  .+.|+ .||+|++-...
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            35678888899999999999999999999888898888764 443  47786 59998765543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=1e-05  Score=102.43  Aligned_cols=60  Identities=15%  Similarity=0.200  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~  989 (1428)
                      ...++..|.+.+++.|++|+++++|++|..+ +++|++|... +|+  .+.|+ .||+|++...-
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence            4668888888899999999999999999986 5788888664 343  47787 59999877653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.35  E-value=5.1e-06  Score=105.69  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|++++.|++|..+++++++|..   .+|+  .+.|+.||+|++...
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            467788888888889999999999999998898888764   3564  589999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.35  E-value=1e-05  Score=102.64  Aligned_cols=61  Identities=20%  Similarity=0.188  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC-Cc--EEEc-CEEEEcCCHHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN-GQ--IFDA-DIIVSNADIINTY  990 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~-G~--~i~a-d~VV~A~~~~~~~  990 (1428)
                      ...+...|.+.+++.|++|+++++|+++..+++++++|...+ |+  .+.| +.||+|++.....
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n  284 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH  284 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence            356889999999999999999999999988889999987653 33  4676 6899999876553

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.34  E-value=6.2e-06  Score=101.44  Aligned_cols=63  Identities=21%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             eecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecC-CcEEEcCEEEEcCCHH
Q psy10545        925 FPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKN-GQIFDADIIVSNADII  987 (1428)
Q Consensus       925 ~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~-G~~i~ad~VV~A~~~~  987 (1428)
                      ++.++...+.+.|.+.+++.|++|+++++|++|..+  ++++++|...+ +.++.|+.||+|++..
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~  182 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL  182 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence            445667789999999999999999999999999886  57778877643 3589999999999854

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=3.3e-06  Score=107.12  Aligned_cols=59  Identities=14%  Similarity=0.255  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...+...|.+.+++.|++|++++.|+++..+++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            3578889999899899999999999999988888888753   3564  589999999998764

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=3.9e-06  Score=106.31  Aligned_cols=59  Identities=15%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      -..|...|.+.+.+.|++|++++.|+++..+ ++++++|..   .+|+  .+.|+.||+|++...
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3568888988888889999999999999985 788888875   3564  578999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=3.6e-06  Score=107.40  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      .+.|.+.+++.|++|++++.|+++..++++|++|...   +|+  .+.|+.||+|++-..
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            3667777888899999999999999888999998764   453  578999999998754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.33  E-value=2.7e-07  Score=103.97  Aligned_cols=143  Identities=20%  Similarity=0.361  Sum_probs=88.8

Q ss_pred             hhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcC
Q psy10545        300 RNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYN  379 (1428)
Q Consensus       300 ~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~  379 (1428)
                      .+|+..-.+..+.|++|+|+||.|+.+|+.|+++|++|+|+|+.+.+                |+|++++...      .
T Consensus        14 ~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~----------------Ggg~~~gg~~------~   71 (257)
T PRK04176         14 EEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF----------------GGGMWGGGML------F   71 (257)
T ss_pred             HHHHHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC----------------CCccccCccc------c
Confidence            33333333445678999999999999999999999999999998765                3333322100      0


Q ss_pred             CCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC
Q psy10545        380 PKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN  459 (1428)
Q Consensus       380 ~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~  459 (1428)
                      +.  . .+..                  .....++++        .+.+..    ....++++++..|...|.+++.+.|
T Consensus        72 ~~--~-~v~~------------------~~~~~l~~~--------gv~~~~----~~~g~~~vd~~~l~~~L~~~A~~~G  118 (257)
T PRK04176         72 NK--I-VVQE------------------EADEILDEF--------GIRYKE----VEDGLYVADSVEAAAKLAAAAIDAG  118 (257)
T ss_pred             cc--c-cchH------------------HHHHHHHHC--------CCCcee----ecCcceeccHHHHHHHHHHHHHHcC
Confidence            00  0 0000                  000000100        010100    1123577899999999999998888


Q ss_pred             -eEEecceEEEEe--CC-e---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545        460 -FLFNNKTVEIIT--PT-S---IRIN-----------NKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       460 -~~~~~~~v~~i~--~~-~---v~l~-----------~g~~~~a~lvI~AdG~~S~  497 (1428)
                       .++.+++|+++.  .+ .   +.+.           +..+++|++||+|+|..|.
T Consensus       119 v~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        119 AKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             CEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence             788888888875  22 2   2221           2247999999999998854

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.32  E-value=1.3e-05  Score=101.49  Aligned_cols=41  Identities=37%  Similarity=0.619  Sum_probs=37.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC--CCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD--KPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~--~~GGr~  750 (1428)
                      .++||+|||+|.+||+||..++++|.+|+||||.+  ..||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            35899999999999999999999999999999999  788854

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=1e-05  Score=103.26  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHc--------C-----cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL--------G-----GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~--------G-----~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.        |     ++|++++.|+++..+++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            56788888888776        7     999999999999988888888754   3554  579999999998643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.31  E-value=8.3e-06  Score=103.75  Aligned_cols=58  Identities=9%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.| ++|+.++.|++|..+++++++|..   .+|+  .+.|+.||+|++...
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            456777888887776 999999999999888888888753   3554  689999999998764

>PRK08275 putative oxidoreductase; Provisional

Probab=98.30  E-value=4.4e-06  Score=105.60  Aligned_cols=58  Identities=9%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|++++.|++|..+ ++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            467888999899999999999999999987 678888764   3564  478999999998754

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.30  E-value=1.1e-05  Score=99.68  Aligned_cols=58  Identities=26%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ...+.+.|.+.+++.|++++.+ .|+.+..+++++++|.+ +|+.+.++.||+|++....
T Consensus       119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        119 GKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            3568889999999999999876 79999888888888877 5668999999999987653

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.30  E-value=7.4e-06  Score=99.79  Aligned_cols=64  Identities=17%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..|.+.|.+.+.+. |++|+++++|+++..++++ +.|++   .+++++.||.||-|-|.....++.++
T Consensus       107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~  174 (400)
T PRK06475        107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSMLRAKAG  174 (400)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence            35666777777654 7899999999999877766 44444   34467999999999999998887764

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.29  E-value=6.7e-06  Score=104.62  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|+.++.|+++.. +++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            57888999989899999999999999988 6788888864   3564  578999999997653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.29  E-value=2.2e-05  Score=98.65  Aligned_cols=60  Identities=27%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      .|.+.|.+.+..  ..++++++|++|..++++ +.|++.+|+++.+|.||.|-+.+...++.+
T Consensus       195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aDlVVGADG~~S~vR~~l  254 (668)
T PLN02927        195 TLQQILARAVGE--DVIRNESNVVDFEDSGDK-VTVVLENGQRYEGDLLVGADGIWSKVRNNL  254 (668)
T ss_pred             HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCE-EEEEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence            455555544321  247889999999988887 458888998999999999999987776555

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.29  E-value=6.2e-05  Score=95.31  Aligned_cols=235  Identities=14%  Similarity=0.044  Sum_probs=129.4

Q ss_pred             CCCCC--CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCcccc-cccccccc--Ccc
Q psy10545          1 MNFEK--NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQY-MLIKPLIT--YSW   73 (1428)
Q Consensus         1 ~~~~~--~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~~-~~~~~~~~--~~w   73 (1428)
                      |+...  ...+|++||||||+||++|+.|.+.  +++|+|||+.+..  ..+.+++|..-+..+.. ++.+.+..  ..|
T Consensus         1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~--G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (538)
T PRK06183          1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPN   78 (538)
T ss_pred             CCCCCCccCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccC
Confidence            55544  4579999999999999999999986  5899999999766  47888998542221111 22344443  236


Q ss_pred             CccEEEcCCCcccc--C--------ccc-cceehhHHHHHHHHH----cCC----------------EEE--Eec-----
Q psy10545         74 PSYQVKFPKFNRKI--F--------SGY-YSICSKHLNSYLIRA----LGQ----------------QWN--LSS-----  115 (1428)
Q Consensus        74 ~~~~~~~~~~~~~~--~--------~~Y-~~~~~~~~~~~~~~~----~~~----------------~~~--~~~-----  115 (1428)
                      ..+.++..+.+...  +        +++ ..+...++.+.+.+.    -|.                .++  ++.     
T Consensus        79 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~  158 (538)
T PRK06183         79 HGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQR  158 (538)
T ss_pred             CceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCE
Confidence            66666654332211  1        222 245556666655441    010                111  100     


Q ss_pred             -------------CC-------C-----C---CceEeeecccCCC--CCCc--------eEEEEccCCCCcEEEEEeeec
Q psy10545        116 -------------PH-------G-----L---DIPIIMDATVNQK--NDEY--------HFIYTLPLTPNSLMIEDTRYT  157 (1428)
Q Consensus       116 -------------~~-------g-----~---~~~~~MD~r~~~~--~~~~--------~F~Y~lP~~~~~~liE~T~~~  157 (1428)
                                   .|       |     .   ...+..|+..+..  ....        ..+-.+|+.++..-++.+...
T Consensus       159 ~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~  238 (538)
T PRK06183        159 ETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLP  238 (538)
T ss_pred             EEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCC
Confidence                         00       0     0   2233445322110  0001        122245777777767776654


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCcc--eeEEEEEEEeecCCCCcchhh-cccCceecccccccccCCCCCcHHHHHHHHH
Q psy10545        158 KKPFLKIDMLKKSIKDYAIKNRWKL--KNIEREEIGSIPIALKNEKII-KFKKTICVGLRANLLHATTGYSLPIAIQLAE  234 (1428)
Q Consensus       158 ~~~~~~~~~~~~~l~~~l~~~g~~~--~~i~~~E~g~iPm~~~~~~~~-~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~  234 (1428)
                      .... ....-.+.+.++++..+...  .++..  ....+..... ... ...+++-+|=|+-.++|..|..+..+.+.|.
T Consensus       239 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~  314 (538)
T PRK06183        239 GETE-EQLASPENVWRLLAPWGPTPDDAELIR--HAVYTFHARV-ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAA  314 (538)
T ss_pred             CCCh-hhcCCHHHHHHHHHhhCCCCcceEEEE--EEeeeEccEE-hhhhccCCEEEEechhhcCCCccccchhhhHHHHH
Confidence            3221 11111344555555543322  23332  2333332221 111 2367999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy10545        235 NIAKYSI  241 (1428)
Q Consensus       235 ~~a~~~~  241 (1428)
                      .++..|.
T Consensus       315 ~La~kLa  321 (538)
T PRK06183        315 NLAWKLA  321 (538)
T ss_pred             HHHHHHH
Confidence            9888775

>KOG2853|consensus

Probab=98.29  E-value=0.00014  Score=79.96  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             hccCccccccceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCC
Q psy10545        702 FYANKLSFFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKP  746 (1428)
Q Consensus       702 f~~~~~~~~~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~  746 (1428)
                      .++++.-+.+.||+|||||..|++.|+.|++.    |.+|+|+|+++..
T Consensus        77 ~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   77 TLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            45555556788999999999999999999864    7999999998753

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.28  E-value=1.6e-05  Score=100.00  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec-------CC-cEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK-------NG-QIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~-------~G-~~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|+.++.|++|..++ +++++|.+.       ++ ..+.|+.||+|++...
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            5688899999999999999999999998875 588887653       22 3689999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.28  E-value=4.3e-06  Score=103.16  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|..+++. ..|++.+|+++.+|.||+|++.
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~  261 (446)
T TIGR01424       207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGR  261 (446)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCC
Confidence            556777888899999999999999999876555 4566778888999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06126 hypothetical protein; Provisional

Probab=98.28  E-value=4.4e-06  Score=106.08  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +-..|.+.+++. |++|+++++|++|..+++++. +++   .+|+  ++.+|.||.|.+....+++.++.
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi  196 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGI  196 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCC
Confidence            455666666654 799999999999998877644 443   3464  68999999999999888877653

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.27  E-value=5.8e-07  Score=100.84  Aligned_cols=133  Identities=20%  Similarity=0.308  Sum_probs=84.4

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|++|+|+||.|+++|+.|+++|++|+|||+.+.+                |+|+++....      .+..   .+..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~----------------Ggg~~~gg~~------~~~~---~~~~   74 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF----------------GGGSWGGGML------FSKI---VVEK   74 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC----------------CccccCCCcc------eecc---cccc
Confidence            4678999999999999999999999999999998765                3443322100      0000   0000


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                                        .....++     ++   .+.+.    .....+++.++..+.+.|.+++.+.| .++.++.|+
T Consensus        75 ------------------~~~~~l~-----~~---gi~~~----~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~  124 (254)
T TIGR00292        75 ------------------PAHEILD-----EF---GIRYE----DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVE  124 (254)
T ss_pred             ------------------hHHHHHH-----HC---CCCee----eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEE
Confidence                              0000001     00   01110    01123566799999999999998888 688888888


Q ss_pred             EEeC--C--e---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545        469 IITP--T--S---IRIN-----------NKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       469 ~i~~--~--~---v~l~-----------~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++..  +  .   |.+.           +..+++|++||+|+|..|.
T Consensus       125 dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~  171 (254)
T TIGR00292       125 DLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE  171 (254)
T ss_pred             EEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence            8752  2  1   3332           2247999999999997743

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.27  E-value=2.3e-05  Score=99.50  Aligned_cols=58  Identities=14%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+.+.|++|+.++.|+++..+ ++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            568888988888899999999999999986 578888865   2454  578999999998764

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.27  E-value=5e-06  Score=104.40  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC--CeEEEEEec-CCc--EEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNN--NKVNKVHLK-NGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~--~~v~~V~~~-~G~--~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.|.+.+++. |++|++++.|+++..++  +++++|... +|+  .+.|+.||+|++..
T Consensus       133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            356888888888754 89999999999998863  788888653 554  37899999999874

>PLN02985 squalene monooxygenase

Probab=98.26  E-value=0.00012  Score=91.23  Aligned_cols=99  Identities=16%  Similarity=0.033  Sum_probs=63.7

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCc--cc-ccccc---ccccCccCccEE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSS--SQ-YMLIK---PLITYSWPSYQV   78 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~--~~-~~~~~---~~~~~~w~~~~~   78 (1428)
                      .+.++|++|||||+||+++|+.|++.  +.+|+|+|+.+...++.++.+-.+..-  .. -+.++   ......|.++.+
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v  117 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAV  117 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEE
Confidence            34578999999999999999999986  489999999865555667766542100  00 11112   222346777777


Q ss_pred             EcCCCccccCc-------cc----cceehhHHHHHHHH
Q psy10545         79 KFPKFNRKIFS-------GY----YSICSKHLNSYLIR  105 (1428)
Q Consensus        79 ~~~~~~~~~~~-------~Y----~~~~~~~~~~~~~~  105 (1428)
                      +..+....+++       +|    .++...+|.+.+.+
T Consensus       118 ~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~  155 (514)
T PLN02985        118 YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQ  155 (514)
T ss_pred             EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHH
Confidence            65442222222       23    46788889888876

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.25  E-value=4.7e-06  Score=100.52  Aligned_cols=64  Identities=14%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..|.+.|.+.+.+.+ ++++++++|++|..++++ +.|.++++ ++.||.||.|-|.....++.+..
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~  168 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDGANSKVRSHYFA  168 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence            456677777777765 889999999999887776 55778776 89999999999999888877654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.25  E-value=7e-06  Score=95.95  Aligned_cols=54  Identities=24%  Similarity=0.349  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        932 ALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       932 ~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+...+.+.+++ .+.+|. ..+|++|..+++++++|.+.+|+.+.+|.||+|+++
T Consensus        96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            344456666666 357775 679999999999999999999999999999999988

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.25  E-value=1.9e-06  Score=103.53  Aligned_cols=55  Identities=24%  Similarity=0.337  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADI  986 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~  986 (1428)
                      .+.+.|.+.+++.|++|+++++|+++..+++++..|.+.+|  ..+.||.||+|++.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence            78899999999999999999999999988888776666555  35899999999964

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.25  E-value=1.1e-05  Score=101.09  Aligned_cols=58  Identities=19%  Similarity=0.292  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~  988 (1428)
                      ..+...+.+.+.+. |++|+++++|+++..++++|++|... +|+  ++.|+ .||+|++...
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            45677777776664 99999999999999888899888653 343  57886 6999887754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.23  E-value=9.3e-06  Score=103.29  Aligned_cols=59  Identities=10%  Similarity=0.139  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      -..+...|.+.+.+.|++|+.++.++++..+ ++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            3568888988888889999999999998887 678888865   3563  578999999998754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.23  E-value=7.7e-06  Score=103.25  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe-EEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNK-VNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~-v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|++++.|+++..++++ +++|..   .+|+  .+.|+.||+|++...
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            567888888888889999999999999987765 888764   3564  588999999998754

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.23  E-value=6.6e-07  Score=109.35  Aligned_cols=56  Identities=13%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---CcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---GQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      +.+.+.|++|++++.|.++..+++++++|++.+   ..++.|+.||-|++-..+.. +.+
T Consensus        98 ~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~-~aG  156 (428)
T PF12831_consen   98 EMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA-LAG  156 (428)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            334667999999999999999999999998865   46799999999998766654 444

>PRK12839 hypothetical protein; Provisional

Probab=98.22  E-value=1.7e-05  Score=100.16  Aligned_cols=59  Identities=20%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec--CCc-EE-EcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK--NGQ-IF-DADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~--~G~-~i-~ad~VV~A~~~~~~  989 (1428)
                      ..++..|.+.+++.|++|+++++|++|..+ ++++++|...  +|+ .+ .++.||+|++...-
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            568888999999999999999999999875 6788898653  443 23 45899999977653

>PRK06116 glutathione reductase; Validated

Probab=98.22  E-value=6e-06  Score=102.21  Aligned_cols=56  Identities=14%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++...|++.+|+++.+|.||++++.
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~  263 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR  263 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence            46778888899999999999999999987654434577788889999999999864

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=2.3e-05  Score=99.42  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcC----cEEEeCceeeEEEEe-CCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLG----GNLILNSQVISIYVN-NNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G----~~V~~~~~V~~I~~~-~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.+    ++|..++.++++..+ +++|++|...   +|+  .+.|+.||+|++...
T Consensus       133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            457778877776544    789999999999885 6889998764   343  478999999998765

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.20  E-value=1.6e-05  Score=101.16  Aligned_cols=58  Identities=17%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+.+ .|++|+.++.|+++..+++++++|..   .+|+  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            5577888887766 58999999999999988888888754   3564  578999999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=98.19  E-value=1.6e-05  Score=99.00  Aligned_cols=59  Identities=19%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecC-C--cEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKN-G--QIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~-G--~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++ .|++|++++.|++|..+++++++|.+.+ +  ..+.|+.||+|++....
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            5688889998887 6999999999999998888888887654 3  36899999999988653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=1.5e-05  Score=101.35  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC----CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN----NKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~----~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|++++.|++|..++    +++.+|..   .+|+  .+.|+.||+|++...
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            5688899998999999999999999998876    78888865   3564  578999999998764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.18  E-value=2.4e-05  Score=100.19  Aligned_cols=60  Identities=10%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ....+...|.+.+.+.|++|+.++.|++|..+++++++|...   +|+  .+.|+.||+|++...
T Consensus       156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            345677788888889999999999999999988998887653   564  468999999998754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.16  E-value=3.4e-06  Score=99.77  Aligned_cols=57  Identities=26%  Similarity=0.379  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~~  987 (1428)
                      ..+.++|.+.++++|+++..+++|+++..++++++.|.+.++  ..+.||+||+|++.+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            578899999999999999999999999999999888887776  479999999999887

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.16  E-value=1.3e-05  Score=93.68  Aligned_cols=50  Identities=16%  Similarity=0.313  Sum_probs=40.1

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+++.|+++++ +.|++|..+++. +.|++.+|+++.+|+||+|++..
T Consensus        62 ~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        62 KMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             HHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCC
Confidence            344556667899998 899999887665 56777888899999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.15  E-value=3.4e-05  Score=105.22  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=38.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+.||||||+|.|||+||..++++|.+|+|+||.+..||..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            35899999999999999999999999999999999998854

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.14  E-value=9.9e-06  Score=99.23  Aligned_cols=62  Identities=16%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+.+.|.+.+.  +..++++++|++|..++++ +.|++++|+++.+|.||.|.+.....++.+.
T Consensus       105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~  166 (414)
T TIGR03219       105 ADFLDALLKHLP--EGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADGIKSALRDYVL  166 (414)
T ss_pred             HHHHHHHHHhCC--CceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCCccHHHHHHhc
Confidence            345566666554  3578999999999887776 6788889989999999999999988776653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.14  E-value=1.9e-05  Score=97.27  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=35.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      +||+|||+|++|+++|+.|+++|++|+|+|++...||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999998886

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=7.6e-05  Score=83.38  Aligned_cols=248  Identities=14%  Similarity=0.183  Sum_probs=146.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--------------------CCeEEcccccccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--------------------DGFIFDAGPTVITD  769 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--------------------~G~~~d~G~~~i~~  769 (1428)
                      ..+||+|+|.|+.-..-+..|+.+|.+|+++|+++.-|+-.+|.+.                    ..+.+|.-|..+..
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A   84 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA   84 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence            3699999999999999999999999999999999999998888742                    01334444444444


Q ss_pred             chHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHH-HHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545        770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEK-QIAKFNLNDIKGYRLFLNYSKKVFKEGYLS  848 (1428)
Q Consensus       770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  848 (1428)
                      .+-+..++-+-|  +..++++.+....+  .+.+|+.+.+|.+..+... .+..+  .+...+.+|++......+.   .
T Consensus        85 ~s~l~~iLi~t~--v~~YLefk~i~~~~--~~~~~k~~kVP~ne~ei~~s~~lsL--~eKr~vmrFl~~V~n~~~~---~  155 (434)
T COG5044          85 NSELLKILIETG--VTEYLEFKQISGSF--LYRPGKIYKVPYNEAEIFTSPLLSL--FEKRRVMRFLKWVSNYAEQ---K  155 (434)
T ss_pred             cchHHHHHHHhC--hHhheeeeeccccE--EecCCcEEECCccHHhhhcCCCcch--hhHHHHHHHHHHHHhHHhh---h
Confidence            444445555555  56778888877643  5666788888776433211 11111  1334455555543332221   0


Q ss_pred             hcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHH-HHHHHH-hhcccccCCCCchhHHHHHHHHhcc--ccc--
Q psy10545        849 FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDY-LKQAFS-FNSLFIGGNPFSTSSIYTLIHALEY--EWG--  922 (1428)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-l~~~l~-~~~~~~g~~p~~~s~~~~~~~~~~~--~~g--  922 (1428)
                                      .....+..+.+..+++.+.+.... ...++. ..+..+..+-..-.+.-.++.|+..  ..|  
T Consensus       156 ----------------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~  219 (434)
T COG5044         156 ----------------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKS  219 (434)
T ss_pred             ----------------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCC
Confidence                            001112223445555555544221 222221 1222211110011112223333221  112  


Q ss_pred             -eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcC
Q psy10545        923 -IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       923 -~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~  984 (1428)
                       ..+|+-|.++|++.+++...-.|++..+|+++.+|...+. |.+|.. ++.+..|..||..-
T Consensus       220 pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~~  280 (434)
T COG5044         220 PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISSP  280 (434)
T ss_pred             cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCCc
Confidence             3478888999999999988888999999999999987665 334443 34578888888765

>PRK09897 hypothetical protein; Provisional

Probab=98.12  E-value=1.3e-05  Score=98.88  Aligned_cols=55  Identities=11%  Similarity=-0.004  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHcC--cEEEeCceeeEEEEeCCeEEEEEecC-CcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLG--GNLILNSQVISIYVNNNKVNKVHLKN-GQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G--~~V~~~~~V~~I~~~~~~v~~V~~~~-G~~i~ad~VV~A~~~  986 (1428)
                      +...+.+.+.+.+.|  ++++.+++|+.|..++++ +.|++.+ |..+.||.||+|+|-
T Consensus       107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeEEEcCEEEECCCC
Confidence            344555666677777  788899999999988876 5577655 468999999999974

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.11  E-value=2.3e-05  Score=97.95  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC--Cc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN--GQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~--G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+. .|++|+.++.|++|..+++++.+|...+  |+  .+.|+.||+|++...
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            457888888776 5999999999999988888888887643  33  678999999997754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.11  E-value=2.4e-05  Score=99.41  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHH----cCcEEEeCceeeEEEEeC-CeEEEEEec---CCc--EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQN----LGGNLILNSQVISIYVNN-NKVNKVHLK---NGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~----~G~~V~~~~~V~~I~~~~-~~v~~V~~~---~G~--~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++    .|++|+++++|+++..++ +++++|...   +|+  .+.|+.||+|++-.
T Consensus       129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            3455556555543    389999999999998854 588998763   453  57899999999775

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.11  E-value=1.6e-05  Score=99.39  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecC-Cc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKN-GQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~-G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...+.+.|.+.+++. |++|+.++.|++|..+++++++|.+.+ ++  .+.|+.||+|++...
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            457888998888875 899999999999988888888887643 32  589999999998753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.08  E-value=1.5e-05  Score=92.95  Aligned_cols=68  Identities=24%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             HHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecC--Cc----EEEcCEEEEcCCHHHHHHHhcCCCCCChh
Q psy10545        935 KALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKN--GQ----IFDADIIVSNADIINTYRNLLGQYAFGKK 1002 (1428)
Q Consensus       935 ~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~--G~----~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~ 1002 (1428)
                      ..|...+...|.+|++++.|++|..+  ++++++|++.+  +.    .+.++.||+|++...+.+.|+....-+..
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~  272 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKD  272 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HH
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHH
Confidence            33444444448999999999999886  77889988743  33    46789999999999988867655443433

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06996 hypothetical protein; Provisional

Probab=98.05  E-value=0.00043  Score=84.33  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             EEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        190 IGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       190 ~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      ..++|+..... ... ..++.-+|=|+-.+||..|-.+.-+.+.|..+|..|..
T Consensus       275 ~~~~~l~~~~~-~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~  327 (398)
T PRK06996        275 RHAFPLGLNAA-RTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD  327 (398)
T ss_pred             eEEEeeecccc-cceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence            44678765421 112 36799999999999999999999999999999999964

>PLN02815 L-aspartate oxidase

Probab=98.01  E-value=2.3e-05  Score=98.75  Aligned_cols=58  Identities=10%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC-C---eEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNN-N---KVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~-~---~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++. |++|+.++.++++..++ +   +|+||..   .+|+  .+.|+.||+|++...
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  222 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG  222 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence            56788888888765 89999999999999863 3   3788865   3554  568999999998654

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.00  E-value=4.9e-05  Score=96.41  Aligned_cols=58  Identities=14%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..|...|.+.+.+. |++++.++.|+++..+++++.+|..   .+|+  .+.|+.||+|++...
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            46777887777664 7999999999999998888887653   4663  688999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.00  E-value=3.6e-05  Score=96.51  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+.+++.|++++++++|++|..+++. ..|.+.+|+.+.+|.||+|+|..
T Consensus       270 ~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       270 AANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCC
Confidence            344555666678999999999999877654 56778888899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.99  E-value=3e-05  Score=97.41  Aligned_cols=54  Identities=15%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      +.+.+.+.+++.|++++++++|++|..+++. +.|.+.+|+++.+|.||+|+|..
T Consensus       268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCCCEEEcCEEEECCCCC
Confidence            3445566677778999999999999887654 66778888899999999999874

>PLN02507 glutathione reductase

Probab=97.98  E-value=6.3e-05  Score=93.71  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|++++.|++|..++++ +.|.+.+|+++.+|.||++++.
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~  298 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGR  298 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecC
Confidence            567777888899999999999999999876665 4567778888999999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.98  E-value=7.1e-05  Score=94.70  Aligned_cols=59  Identities=14%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCC--cEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G--~~i~ad~VV~A~~~~~  988 (1428)
                      -..|...|.+.+.+. |+++..++.|+++..+++++.+|..   .+|  ..+.|+.||+|++...
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            356888888877664 7999999999999998899888764   366  3678999999997754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.96  E-value=6.6e-05  Score=87.64  Aligned_cols=61  Identities=26%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEec-----CCcEEEcCEEEEcCCHHHHH
Q psy10545        930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLK-----NGQIFDADIIVSNADIINTY  990 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~-----~G~~i~ad~VV~A~~~~~~~  990 (1428)
                      .+.|.+.|.+.+.+. |+++++|++|+.|...+++.+.|.+.     +..++.|+.|++.++...+.
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            578999999999988 89999999999999987665777653     23579999999999887654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG1298|consensus

Probab=97.96  E-value=7.9e-05  Score=83.46  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      .....||||||||++|.+.|+.|+|.|.+|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            345689999999999999999999999999999996

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.95  E-value=7.6e-05  Score=81.59  Aligned_cols=42  Identities=36%  Similarity=0.529  Sum_probs=36.4

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccC--CCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR--DKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~--~~~GGr~  750 (1428)
                      +..+||||||||++||.||..|+.+|++|+|+|++  ..+||.+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            34689999999999999999999999999999886  4556644

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=5.7e-05  Score=86.73  Aligned_cols=54  Identities=13%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      .+.+.+.+.++..|.++.. ..|.+++..++ ...|.+++|+ ++|+.||+|++...
T Consensus        62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~  115 (305)
T COG0492          62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA  115 (305)
T ss_pred             HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcc
Confidence            3445566666666788877 67888877665 6889999996 99999999997654

>PRK10262 thioredoxin reductase; Provisional

Probab=97.91  E-value=8.2e-05  Score=87.75  Aligned_cols=56  Identities=20%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC------cEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG------QIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G------~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|..+++++.+|++.++      +++.+|.||++++.
T Consensus       185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~  246 (321)
T PRK10262        185 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  246 (321)
T ss_pred             HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence            345677788888999999999999999876655666766432      47999999999864

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.91  E-value=7.5e-05  Score=91.59  Aligned_cols=57  Identities=16%  Similarity=0.344  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..+-+.|.+.+.+.|++++.++ |+++..+ ++.+..|++.+|+++.||.||-|+|...
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            5677788898999999999885 7777665 5667899999999999999999997764

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2404|consensus

Probab=97.90  E-value=0.00012  Score=79.97  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=36.2

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .|||||+|++||+|+..+...|-.|+++|+....||...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999888999999999999653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.90  E-value=0.00013  Score=92.15  Aligned_cols=58  Identities=10%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC---CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN---NKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...+.+.+.+.+++|+.++.|+++..++   |+++||..   .+|+  .+.|+.||+|++...
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            3445556666777778999999999999865   68888864   3554  578999999998874

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.90  E-value=0.0001  Score=92.91  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC------CeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNN------NKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~------~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+.+. |++|+.++.|+++..++      +++++|...   +|+  .+.|+.||+|++...
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            46777888877765 89999999999998764      788888753   454  578999999998764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.90  E-value=8.5e-05  Score=91.54  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++. |++++ ...|+++..+ ++++.+|.+.+|..+.|+.||+|++.+-
T Consensus        96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            34566777777777 56776 4478888776 6788999999999999999999998873

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.89  E-value=1.3e-05  Score=91.50  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=93.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcc--cCcchhHHHHH---HHHHhcCCCceEE
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPN--TNQGLWNSIIA---WYLKQYNPKLNVL  385 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~--~g~Gl~~~~~~---~~~~~~~~~~rv~  385 (1428)
                      ..|+||+|+||+|+.+|..++++|.+|+|+|+.+++           |.|+  .|+|=-.--+.   ....+..|+..-.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~-----------GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~f   71 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL-----------GRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHF   71 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccc-----------cceeEecCCCCccccccccHHHHHHhCCCcchH
Confidence            358899999999999999999999999999999887           4443  33332111111   0111222210000


Q ss_pred             EeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccccccee-eechHHHHHHHHHhccCC-eEEe
Q psy10545        386 LLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYS-ICSKHLNSYLIRALGINN-FLFN  463 (1428)
Q Consensus       386 ~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~r~~l~~~L~~~~~~~~-~~~~  463 (1428)
                      ..+     .+..+.            | .+++.+- .+..+.+..  ......+.. -..+.+.++|..++++.| .++.
T Consensus        72 l~s-----al~~ft------------~-~d~i~~~-e~~Gi~~~e--~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~  130 (408)
T COG2081          72 LKS-----ALARFT------------P-EDFIDWV-EGLGIALKE--EDLGRMFPDSDKASPIVDALLKELEALGVTIRT  130 (408)
T ss_pred             HHH-----HHHhCC------------H-HHHHHHH-HhcCCeeEE--ccCceecCCccchHHHHHHHHHHHHHcCcEEEe
Confidence            000     000000            0 0011000 001111111  111223333 456788999999999998 6899


Q ss_pred             cceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545        464 NKTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       464 ~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~  498 (1428)
                      +++|.++..++    +++.+|.+++|+-+|-|.|..|.|
T Consensus       131 ~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P  169 (408)
T COG2081         131 RSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP  169 (408)
T ss_pred             cceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence            99999998653    677788899999999999999775

>KOG2415|consensus

Probab=97.86  E-value=0.00023  Score=80.30  Aligned_cols=298  Identities=16%  Similarity=0.165  Sum_probs=151.2

Q ss_pred             ChhhHhhhccCCCC--hHHHHHHHhcCCchHHHHHHHHhh------cCCeEEEEcCCCCCcccccccccCCCCcccCcch
Q psy10545        295 PDKIIRNFYANKLS--FFDKIRIFSGAGIGGIALAIRLQT------AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGL  366 (1428)
Q Consensus       295 ~~~~~~~Fl~~~~~--~~~~~~ii~g~~~~~~~~a~~La~------~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl  366 (1428)
                      |-..=.|.|+..+.  ..++|++|+|+||+|+++|++|.|      ..++|+|+|+...+                |+=.
T Consensus        58 ~~~~d~r~~~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~----------------Gght  121 (621)
T KOG2415|consen   58 PLTKDERWLDVNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV----------------GGHT  121 (621)
T ss_pred             CCCcchhhhcccchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc----------------CCce
Confidence            33444555555433  246799999999999999999954      36899999998776                2222


Q ss_pred             hHHHHHHHHHhcCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccc-----cCccEEEcCCCccccccccee
Q psy10545        367 WNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYS-----WPSYQVKFPKFNRKIFSGYYS  441 (1428)
Q Consensus       367 ~~~~~~~~~~~~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  441 (1428)
                      .++.               +|++..  .+....-|.++     ..|+.....++     ...+++..|....-.....|+
T Consensus       122 lSGa---------------viep~a--ldEL~P~wke~-----~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYv  179 (621)
T KOG2415|consen  122 LSGA---------------VIEPGA--LDELLPDWKED-----GAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYV  179 (621)
T ss_pred             ecce---------------eeccch--hhhhCcchhhc-----CCcccccccccceeeeccCceeecCCCcccccCCcEE
Confidence            2221               122211  11222234431     22222222222     123444444422222235799


Q ss_pred             eechHHHHHHHHHhccCCe-EEe-----------cceEEEEeCCeE----------EEcCCcEEEeeEEEecCCCCCC--
Q psy10545        442 ICSKHLNSYLIRALGINNF-LFN-----------NKTVEIITPTSI----------RINNKKIINANCIIDGRGLKNS--  497 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~~-~~~-----------~~~v~~i~~~~v----------~l~~g~~~~a~lvI~AdG~~S~--  497 (1428)
                      |+-..+-+.|-++|++.|+ ++-           +..|.+|...++          ++..|-++.|++-|-|.|-+.+  
T Consensus       180 v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls  259 (621)
T KOG2415|consen  180 VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS  259 (621)
T ss_pred             EEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhH
Confidence            9999999999999998883 332           223444432221          2233457999999988887754  


Q ss_pred             -C------CCcce--E-EEEEEE--EEecC-CcCCCCceEEeccc--CCCCCcceEEEEeeCCCCceEEEeEEeccC--C
Q psy10545        498 -Q------FDGIY--Q-IFLGQQ--WNLSS-PHGLDIPIIMDATV--NQKNDEYHFIYTLPLTPNSLMIEDTRYTKK--P  560 (1428)
Q Consensus       498 -~------~~~~~--q-~~~g~~--~~~~~-~~~~~~~~~~~~~~--~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~--~  560 (1428)
                       +      ++..-  | ..+|+.  +++.. .|+. ..+....+-  +..-.|-+|+|-+  .++.+.++..+--+.  +
T Consensus       260 kqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~p-G~v~HT~GwPl~~~tYGGsFlYh~--~d~~VavGlVVgLdY~NP  336 (621)
T KOG2415|consen  260 KQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNP-GEVAHTLGWPLDNDTYGGSFLYHF--NDPLVAVGLVVGLDYKNP  336 (621)
T ss_pred             HHHHHHhCcccCCCcceeccccceeEecChhhcCC-cceeeeccCcccCCccCceeEEEc--CCCeEEEEEEEEecCCCC
Confidence             1      22111  1 223322  12221 1221 222222222  2222456688875  567777766554332  2


Q ss_pred             CCCH-HHHHHHHHH-HHHHcCCccceee------eeee--eeecccCCchhhhhccCcccccccccccccCCCCC----h
Q psy10545        561 FLKI-DMLKKSIKD-YAIKNRWKLKNIE------REEI--GSIPIALKNEKIIKFKKTICVGLRANLLHATTGYS----L  626 (1428)
Q Consensus       561 ~~~~-~~~~~~l~~-~~~~~~~~~~~~~------~~~~--~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G----~  626 (1428)
                      .+++ .+|.+.=++ ++++ -...|+.+      ..|.  .+||      + .+.++-+|||=.||.++=--=-|    +
T Consensus       337 ~lsP~~EFQk~K~hP~i~~-vleGgk~i~YgARaLNEGGfQsiP------k-l~FPGG~liGcSaGFlNVpKIKGTHtAM  408 (621)
T KOG2415|consen  337 YLSPYKEFQKMKHHPSISK-VLEGGKRIAYGARALNEGGFQSIP------K-LVFPGGALIGCSAGFLNVPKIKGTHTAM  408 (621)
T ss_pred             CCCHHHHHHHhhcCcchhh-hhcCcceeeehhhhhccCCcccCc------c-cccCCceEeecccccccccccccchhhh
Confidence            3333 343331111 1111 11122221      1222  2444      1 25588999999999887543333    4


Q ss_pred             HHHHHHHHHHHhhcc
Q psy10545        627 PIAIQLAENIAKYSI  641 (1428)
Q Consensus       627 ~~a~~la~~l~~~~~  641 (1428)
                      ...+..|+.+-+++.
T Consensus       409 KSGmlAAesif~ai~  423 (621)
T KOG2415|consen  409 KSGMLAAESIFEAIK  423 (621)
T ss_pred             hcchhHHHHHHHHHh
Confidence            455556666666654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.83  E-value=0.00026  Score=95.31  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceE
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYV  752 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s  752 (1428)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            579999999999999999999999999999999999997753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=3.8e-05  Score=90.33  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ..+||||||||.||.-||...++.|.+++++=-+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            3599999999999999999999999999998765

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.81  E-value=0.00029  Score=73.31  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             HHHHHHHHHcCcEEE-eCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        935 KALIKLFQNLGGNLI-LNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       935 ~~L~~~l~~~G~~V~-~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +.+.+.+ ..|++|. ...+|+.|...+++ ..|.+++|..+.||+||+|+|-
T Consensus       105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  105 DRLLARL-PAGITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             HHHHHhh-cCCcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence            3444444 3465554 46799999998887 6788899999999999999863

>TIGR01810 betA choline dehydrogenase

Probab=97.76  E-value=0.00016  Score=91.49  Aligned_cols=59  Identities=17%  Similarity=0.088  Sum_probs=45.5

Q ss_pred             HcCcEEEeCceeeEEEEeCCeEEEEEecCC-c---EEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        943 NLGGNLILNSQVISIYVNNNKVNKVHLKNG-Q---IFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-~---~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      ..|.+|++++.|++|..+++++++|++.++ .   .+.++.||+|++...+.+.|+....-|.
T Consensus       206 r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~  268 (532)
T TIGR01810       206 RPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDA  268 (532)
T ss_pred             CCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCH
Confidence            457999999999999999999999987543 2   3578999999998777765554433333

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2852|consensus

Probab=97.75  E-value=0.00013  Score=78.79  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEec---C-CcEEEcCEEEEcCCHHHHH
Q psy10545        930 VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLK---N-GQIFDADIIVSNADIINTY  990 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~---~-G~~i~ad~VV~A~~~~~~~  990 (1428)
                      .+.+++.|.+.+++.| +++.++ .|.+|..+.+++..|..+   + +.....+++|++++||...
T Consensus       146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk  210 (380)
T KOG2852|consen  146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK  210 (380)
T ss_pred             HHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence            3567888888888877 889888 588887667776666554   2 3456778999999999643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.71  E-value=0.00025  Score=94.70  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            458999999999999999999999999999999874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.69  E-value=2.3e-05  Score=97.21  Aligned_cols=42  Identities=29%  Similarity=0.418  Sum_probs=39.0

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      |++|||+|||||++|++||..+++.|++|+|+|+++.+||.|
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c   42 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC   42 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence            346999999999999999999999999999999888899976

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.67  E-value=6.6e-05  Score=92.69  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCC-CCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGV-GYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~-~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      ++|+||+|+|++|+.+|+++|+.|.+|+|||+.+..        .|. .-.+.-+|+..+.+...+....          
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~--------iG~m~CnpsiGG~akg~lvrEidalG----------   65 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDT--------IGQMSCNPAIGGIAKGHLVREIDALG----------   65 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccc--------ccccCCccccccchhhHHHHHHHhcC----------
Confidence            479999999999999999999999999999987422        010 0001123333322221110000          


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-CeEEecceEE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-NFLFNNKTVE  468 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~v~  468 (1428)
                            +.+.-+.           +...+    ...+.-.........+...+++..+.+.+.+.+.+. |..+..+.|+
T Consensus        66 ------g~~g~~~-----------d~~gi----q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~  124 (618)
T PRK05192         66 ------GEMGKAI-----------DKTGI----QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVE  124 (618)
T ss_pred             ------CHHHHHH-----------hhccC----ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEE
Confidence                  0000000           00000    000000000011122345689999999999999765 5434566787


Q ss_pred             EEeC--Ce---EEEcCCcEEEeeEEEecCCCC
Q psy10545        469 IITP--TS---IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       469 ~i~~--~~---v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ++..  +.   |.+.+|..+.|+.||+|+|..
T Consensus       125 ~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192        125 DLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             EEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            7642  22   677889999999999999987

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00033  Score=77.20  Aligned_cols=56  Identities=21%  Similarity=0.299  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcE--EEcCEEEEcCCHH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI--FDADIIVSNADII  987 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~--i~ad~VV~A~~~~  987 (1428)
                      ++-+.|...+++.|+.+..+.+|.+....++++..|.+.++..  +.||.+|+|.+..
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf  316 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF  316 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence            5678899999999999999999999999999999999887754  6799999998654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.66  E-value=4e-05  Score=93.17  Aligned_cols=55  Identities=20%  Similarity=0.381  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++++++++|++|.. ++. +.|++.+|+++.+|.||++++..
T Consensus       186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~  240 (396)
T PRK09754        186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGIS  240 (396)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCC
Confidence            34566788888899999999999999975 443 56778899999999999999754

>KOG2415|consensus

Probab=97.66  E-value=6.1e-05  Score=84.81  Aligned_cols=47  Identities=32%  Similarity=0.349  Sum_probs=41.1

Q ss_pred             CCccccEEEECccHHHHHHHHHHhcc----CCCCeEEEEccCCCCCCceeE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQY----NPKLNVLLLELSSSVKNHIWS   51 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~----~~~~~v~~~~~~~~~~~~tw~   51 (1428)
                      ....+|++||||||||||.|.||.|.    +.+++||++|+....+.||-|
T Consensus        73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            44579999999999999999998776    378999999999888778876

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.65  E-value=0.00027  Score=81.89  Aligned_cols=58  Identities=26%  Similarity=0.441  Sum_probs=53.2

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ....+++.+.+.+++.|++|+++++|..|+.+++.+.+|.+++|+++.+|+||+|.+-
T Consensus       171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             chHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence            3567788999999999999999999999999999888999999999999999999864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.63  E-value=4.6e-05  Score=93.03  Aligned_cols=52  Identities=31%  Similarity=0.406  Sum_probs=43.6

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCe-EEEEccCCCCCCcceEEEeCCeE
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGIS-TIILEQRDKPGGRAYVYKQDGFI  759 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~-V~VlEa~~~~GGr~~s~~~~G~~  759 (1428)
                      .+.++||+|||||++||++|++|.++|.. ++||||++.+||.-+..+..+..
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~   57 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLR   57 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceE
Confidence            45678999999999999999999999998 99999999999965544334443

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.63  E-value=3.6e-05  Score=88.56  Aligned_cols=44  Identities=27%  Similarity=0.493  Sum_probs=40.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK  754 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~  754 (1428)
                      ..+++|||||++|++||..|++.|++|.++||++.+||++..+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            46899999999999999999999999999999999999987543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.60  E-value=4.1e-05  Score=94.46  Aligned_cols=55  Identities=9%  Similarity=0.146  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++++++++|++|..++++ +.+. .+|+++.+|.||+|++..
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~-v~v~-~~g~~i~~D~viva~G~~  252 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQ-VLVV-TEDETYRFDALLYATGRK  252 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCE-EEEE-ECCeEEEcCEEEEeeCCC
Confidence            456677778889999999999999999876655 3343 356789999999998643

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.59  E-value=0.00011  Score=86.49  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-EEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-IFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-~i~ad~VV~A~~~~  987 (1428)
                      ..++.+...+.|++.|++|+++++|++|..     .+|++.+|+ ++.++.||.|++..
T Consensus       208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~-----~~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP-----DGVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCceEEECC-----CcEEEccCCeeEecCEEEEcCCCc
Confidence            467788888899999999999999999963     347778887 49999999999764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.58  E-value=4.6e-05  Score=94.12  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|..++++ +.|.+.+| ++.+|.||++++..
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~-v~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHENQ-VQVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEEEcCC-eEEeCEEEEeecCC
Confidence            567788889999999999999999999877665 44655556 68999999998643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.57  E-value=5e-05  Score=100.45  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            57899999999999999999999999999999999999865

>KOG1399|consensus

Probab=97.55  E-value=5.1e-05  Score=91.21  Aligned_cols=43  Identities=30%  Similarity=0.396  Sum_probs=39.2

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +...+|+|||||+|||++|..|.+.|++|+|+||.+.+||.-.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~   46 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK   46 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence            3467999999999999999999999999999999999998543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.55  E-value=0.0014  Score=82.13  Aligned_cols=152  Identities=7%  Similarity=0.058  Sum_probs=84.9

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCC----cEEEeeEEEecCCCCCCC----C-C----c
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNK----KIINANCIIDGRGLKNSQ----F-D----G  501 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g----~~~~a~lvI~AdG~~S~~----~-~----~  501 (1428)
                      ..++...+...+...+.+.| .++..++|+++..++    |++.++    .+++|+.||.|+|..+..    . .    .
T Consensus       150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~  229 (502)
T PRK13369        150 CWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSR  229 (502)
T ss_pred             eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCc
Confidence            34788888899999888888 788888998886432    555443    359999999999987542    1 0    1


Q ss_pred             ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc-----CCCCCHHHHHHHHHHHHH
Q psy10545        502 IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK-----KPFLKIDMLKKSIKDYAI  576 (1428)
Q Consensus       502 ~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~~  576 (1428)
                      ..+..-|..+.+..+.......++.    .. +| .++|++|..++...++.+....     ....+.+..+..+.....
T Consensus       230 ~v~p~kG~~lv~~~~~~~~~~~~~~----~~-dg-r~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~  303 (502)
T PRK13369        230 NVRLVKGSHIVVPKFWDGAQAYLFQ----NP-DK-RVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANR  303 (502)
T ss_pred             ceEEeeEEEEEeCCccCCCceEEEe----CC-CC-eEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHH
Confidence            1233345554444332211111111    11 22 3578999977777777664321     111233333332222211


Q ss_pred             Hc--CCccceeeeeeeeeecccC
Q psy10545        577 KN--RWKLKNIEREEIGSIPIAL  597 (1428)
Q Consensus       577 ~~--~~~~~~~~~~~~~~~Pl~~  597 (1428)
                      -+  .+...+++..-.|.-|+..
T Consensus       304 ~~~~~l~~~~i~~~waGlRPl~~  326 (502)
T PRK13369        304 YFKEKLRREDVVHSFSGVRPLFD  326 (502)
T ss_pred             hhCCCCCHhHEEEEeeceEEcCC
Confidence            12  2333445555567788763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.54  E-value=5.6e-05  Score=98.91  Aligned_cols=42  Identities=29%  Similarity=0.446  Sum_probs=39.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~  577 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK  577 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence            357999999999999999999999999999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06370 mercuric reductase; Validated

Probab=97.51  E-value=6.9e-05  Score=93.13  Aligned_cols=43  Identities=28%  Similarity=0.329  Sum_probs=37.8

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .|.++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            356799999999999999999999999999999996 5677653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.50  E-value=6.7e-05  Score=93.31  Aligned_cols=42  Identities=26%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      |.+|||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            4569999999999999999999999999999999 67888654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.49  E-value=6.5e-05  Score=92.68  Aligned_cols=41  Identities=32%  Similarity=0.453  Sum_probs=37.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ++|||+|||||++|++||..|++.|++|+|+|+. .+||.|-
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            3689999999999999999999999999999995 6888663

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.48  E-value=0.00081  Score=81.42  Aligned_cols=65  Identities=23%  Similarity=0.373  Sum_probs=54.9

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+++.+|   ...++..|.+.+.+ |++|+++++|++|+.++++ +.|++.+|+.+.||+||+|++++.
T Consensus       123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            44555555   37789999999998 9999999999999988776 778888897799999999998874

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.47  E-value=7.7e-05  Score=92.80  Aligned_cols=56  Identities=16%  Similarity=0.288  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|..+++++ .|.+.+|  +++.+|.||++++..
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~i~~D~vi~a~G~~  268 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQV-VYENKGGETETLTGEKVLVAVGRK  268 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEE-EEEEeCCcEEEEEeCEEEEecCCc
Confidence            4567778888888999999999999998777663 3665666  478999999988643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.45  E-value=0.0001  Score=90.95  Aligned_cols=43  Identities=28%  Similarity=0.332  Sum_probs=39.8

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .+.+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            3468999999999999999999999999999999999999774

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.43  E-value=9.5e-05  Score=91.77  Aligned_cols=41  Identities=27%  Similarity=0.430  Sum_probs=38.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c   43 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC   43 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence            36999999999999999999999999999999988889865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.43  E-value=1.9e-05  Score=96.60  Aligned_cols=139  Identities=18%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      |+||+|+|+.|+++|+++|++|.+|+|||+.+.+           |-..+++|+....                      
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l-----------GG~~t~~~~~~~~----------------------   47 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL-----------GGMATSGGVSPFD----------------------   47 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS-----------TGGGGGSSS-EET----------------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC-----------CCcceECCcCChh----------------------
Confidence            4689999999999999999999999999998766           3333333331110                      


Q ss_pred             CCCceeeeccCCcCccccccc-ccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLI-KPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                         +.+   ...   .....+ .++...-........+.  .......+.++...+...|.+.+.++| .++.++.|.++
T Consensus        48 ---~~~---~~~---~~~~gi~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v  116 (428)
T PF12831_consen   48 ---GNH---DED---QVIGGIFREFLNRLRARGGYPQED--RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDV  116 (428)
T ss_dssp             ---TEE---HHH---HHHHHHHHHHHHST---------------------------------------------------
T ss_pred             ---hcc---hhh---ccCCCHHHHHHHHHhhhccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence               000   000   000000 00000000000000000  000001156788888888888887778 68889999888


Q ss_pred             eCCe-----EEEcC---CcEEEeeEEEecCCCC
Q psy10545        471 TPTS-----IRINN---KKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~~-----v~l~~---g~~~~a~lvI~AdG~~  495 (1428)
                      ..++     |++.+   ..+++|+++|||+|..
T Consensus       117 ~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g  149 (428)
T PF12831_consen  117 IRDGGRITGVIVETKSGRKEIRAKVFIDATGDG  149 (428)
T ss_dssp             ---------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            6443     55543   4579999999999965

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.42  E-value=0.0002  Score=84.70  Aligned_cols=60  Identities=20%  Similarity=0.329  Sum_probs=46.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCccccccccccccCccCccEEEcC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFP   81 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (1428)
                      +|++|||||+||+++|++|++.  +.+|+|||++...+.  ||+|..+     .    .+..+.|....+++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG--~~~~~~~-----~----g~~~~~~G~h~f~t~   61 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGG--NCYDEVD-----E----TILFHQYGPHIFHTN   61 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCC--ceeeecC-----C----CceEEeecceeEecC
Confidence            7999999999999999999975  479999999988842  8999752     1    234456766666553

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.41  E-value=0.0074  Score=75.66  Aligned_cols=150  Identities=10%  Similarity=0.090  Sum_probs=81.4

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcC---C--cEEEeeEEEecCCCCCCC----C-C----c
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINN---K--KIINANCIIDGRGLKNSQ----F-D----G  501 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~---g--~~~~a~lvI~AdG~~S~~----~-~----~  501 (1428)
                      .++...+-..+.+.+.+.| .++.+++|+++..+  .  |++.+   |  .+++|+.||.|.|..+..    . .    .
T Consensus       151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~  230 (508)
T PRK12266        151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY  230 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence            4677888888888888888 78888999988642  2  44432   4  369999999999986531    1 0    0


Q ss_pred             ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEec--cC---CCCCHHHHHHHHHHHHH
Q psy10545        502 IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYT--KK---PFLKIDMLKKSIKDYAI  576 (1428)
Q Consensus       502 ~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~--~~---~~~~~~~~~~~l~~~~~  576 (1428)
                      ..+...|..+.+..........++.    .. + -.++|++|..++...++.+...  ..   ...+.+... .|.+.++
T Consensus       231 ~i~p~kG~~lvl~~~~~~~~~~~~~----~~-d-gr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~-~Ll~~~~  303 (508)
T PRK12266        231 GIRLVKGSHIVVPRLFDHDQAYILQ----NP-D-GRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEID-YLCKVVN  303 (508)
T ss_pred             ceeeeeeEEEEECCcCCCCcEEEEe----CC-C-CCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHH-HHHHHHH
Confidence            1222234444343222111111111    11 2 2357889997777778765321  11   112333332 2333332


Q ss_pred             H-c--CCccceeeeeeeeeecccC
Q psy10545        577 K-N--RWKLKNIEREEIGSIPIAL  597 (1428)
Q Consensus       577 ~-~--~~~~~~~~~~~~~~~Pl~~  597 (1428)
                      + +  .+...+++..-.|+-|+..
T Consensus       304 ~~~p~~l~~~~ii~~waG~RPl~~  327 (508)
T PRK12266        304 RYFKKQLTPADVVWTYSGVRPLCD  327 (508)
T ss_pred             HhcCCCCCHHHEEEEeeeeEeeCC
Confidence            2 2  2333445555567778764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.41  E-value=0.00011  Score=95.74  Aligned_cols=42  Identities=31%  Similarity=0.397  Sum_probs=39.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.++|+|||||+|||+||+.|++.|++|+|+|+.+.+||.++
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr  579 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK  579 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence            467999999999999999999999999999999999999875

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.40  E-value=0.012  Score=71.17  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=41.9

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .++-..+-..+.+.+.+.| .++.+++|+++..+  .  |++++| +++|+.||.|+|..+.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence            4566677777777777677 67888899988642  2  455555 7999999999998755

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.40  E-value=0.0071  Score=79.58  Aligned_cols=229  Identities=14%  Similarity=0.142  Sum_probs=119.7

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee--EEeccccCccccc---cccccc--cCccCccEEEcCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW--SFHQTVLSSSQYM---LIKPLI--TYSWPSYQVKFPK   82 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw--~~w~~~~~~~~~~---~~~~~~--~~~w~~~~~~~~~   82 (1428)
                      +++|||||+|||++|+.|++.+++++|+|+|+++....--+  .+|..-+..+...   ....+.  ...|....+...+
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            79999999999999999999877899999998875321111  2332211111100   001111  1368777777654


Q ss_pred             Ccc-ccCccccceehhHHHHHHHHH---cCCEEEEe--------c--CC-------CC------------C--------c
Q psy10545         83 FNR-KIFSGYYSICSKHLNSYLIRA---LGQQWNLS--------S--PH-------GL------------D--------I  121 (1428)
Q Consensus        83 ~~~-~~~~~Y~~~~~~~~~~~~~~~---~~~~~~~~--------~--~~-------g~------------~--------~  121 (1428)
                      ... .-..+|..+.+.+|.+.|.+.   .|.++.+.        .  ..       |.            +        .
T Consensus        82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~  161 (765)
T PRK08255         82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQALAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCR  161 (765)
T ss_pred             EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhhhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCc
Confidence            221 124568889999999988763   23222210        0  00       10            0        0


Q ss_pred             eEee---------ecc-cCCCCCCc--eEEEEccCCCCcEEEEEeee----cCCCCCCHHHHHHHHHHHHHHcCCcceeE
Q psy10545        122 PIIM---------DAT-VNQKNDEY--HFIYTLPLTPNSLMIEDTRY----TKKPFLKIDMLKKSIKDYAIKNRWKLKNI  185 (1428)
Q Consensus       122 ~~~M---------D~r-~~~~~~~~--~F~Y~lP~~~~~~liE~T~~----~~~~~~~~~~~~~~l~~~l~~~g~~~~~i  185 (1428)
                      ...+         +|. .+.. .+.  .+.|.+.-+....++|.+-=    ...+.++.+...+.+.+.++...-. ..+
T Consensus       162 ~~w~g~~~~~~~~~~~~~~~~-~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~l  239 (765)
T PRK08255        162 FVWLGTHKVFDAFTFAFEETE-HGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDG-HPL  239 (765)
T ss_pred             eEEecCCCcccceeEEEEecC-CceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCC-Ccc
Confidence            0111         110 0111 221  12233333333344443210    0011223444555555554442111 111


Q ss_pred             EE-------EEEEeecCCCCcchhhcccC----ceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        186 ER-------EEIGSIPIALKNEKIIKFKK----TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       186 ~~-------~E~g~iPm~~~~~~~~~~~~----~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      +.       .....+++.....+  ...+    +.-+|=|+-.++|..|-....+.+.|-.+++.|..
T Consensus       240 i~~~~~~~~~~w~~~~~~~~~~w--~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~  305 (765)
T PRK08255        240 MSNASHLRGSAWINFPRVVCERW--VHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHE  305 (765)
T ss_pred             cccccccccceeeecceeccCCC--ccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            11       11333433222111  1234    88899999999999999999999999999999964

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.40  E-value=0.0012  Score=80.82  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.++++|++|+++++|++|..  +   .|++++|+++.+|.||++++.
T Consensus       228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~---~v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K---EVVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C---EEEECCCCEEEccEEEEccCC
Confidence            45778888999999999999999999962  2   366889999999999999863

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00099  Score=83.62  Aligned_cols=55  Identities=22%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             HHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC---c-EEEcCEEEEcCCHHHHHHHhcC
Q psy10545        941 FQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG---Q-IFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G---~-~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ++..+.+|++++.|++|..+++++++|++.  ++   + .+.++.||++++..+..+.|+-
T Consensus       213 ~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~  273 (542)
T COG2303         213 LKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL  273 (542)
T ss_pred             hcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence            444459999999999999999998888764  23   1 2577899999988877765554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.39  E-value=0.0001  Score=91.58  Aligned_cols=41  Identities=37%  Similarity=0.559  Sum_probs=37.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..|||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~   43 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL   43 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence            35899999999999999999999999999999977 899764

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.38  E-value=0.00014  Score=88.91  Aligned_cols=42  Identities=24%  Similarity=0.184  Sum_probs=38.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHh--CCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQT--AGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~--~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||+|||+||..|++  .|++|+|+|+.+.+||.++
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr   68 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR   68 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence            45789999999999999999987  7999999999999999776

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.37  E-value=0.0062  Score=79.15  Aligned_cols=57  Identities=12%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..|+...+.++|.+.+.+ | .++.+++|++++.  +.  |.+.+|..++|+.||.|+|..+.
T Consensus       403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            457888999999999988 8 6777889988863  22  55566666889999999999865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.36  E-value=0.00013  Score=90.73  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.++++|++|+++++|++|..++++ +.|++.  +|  +++.+|.||++++.
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCc
Confidence            457788888899999999999999999876654 334443  56  46999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.35  E-value=0.00013  Score=90.85  Aligned_cols=41  Identities=32%  Similarity=0.473  Sum_probs=37.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..|||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence            3699999999999999999999999999999995 7899774

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.35  E-value=0.0013  Score=80.97  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++++++++|++|.  +.   .|++.+|+++.+|.||++++..
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~  240 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTH  240 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCC
Confidence            4567788888999999999999999995  22   4667788889999999998653

>KOG2665|consensus

Probab=97.34  E-value=0.002  Score=70.62  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe----EEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNK----VNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~----v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...+...+.+.++..|+++.+|-+|+.|...+..    .+.|.-..|+++....||-+++...
T Consensus       195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            4677888888899999999999999999866542    1223223467889999988886654

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.33  E-value=0.00099  Score=74.32  Aligned_cols=54  Identities=28%  Similarity=0.385  Sum_probs=42.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEe--CCeEEcccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQ--DGFIFDAGP  764 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~--~G~~~d~G~  764 (1428)
                      .+.+-|||+|++||++|..|-|.    |.++.++|--+..||..-....  .||.+--|-
T Consensus        22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGR   81 (587)
T COG4716          22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGR   81 (587)
T ss_pred             cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcH
Confidence            46789999999999999999885    6799999999999997654432  466654443

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.30  E-value=0.0017  Score=80.35  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|.. ++++..|.++++ ++.+|.||+++|..
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~d~vi~a~G~~  245 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKG-EYEADVVIVATGVK  245 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence            56778888889999999999999999964 444456666555 79999999998753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.30  E-value=0.00034  Score=76.43  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=41.5

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .....++.+.|.+.+++.+ .++.+++|++++.++    |++.++++++|+.||.|.|..|.
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            3778888888888888777 688899999997543    88888889999999999998644

...

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.29  E-value=0.00017  Score=87.20  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+...+.+.+++.|++++++++|++|..+++. ..|.+.+|+++.+|.||++++..
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCC
Confidence            346677888899999999999999999876654 56788899999999999998753

>PRK14694 putative mercuric reductase; Provisional

Probab=97.29  E-value=0.00017  Score=89.58  Aligned_cols=42  Identities=19%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ...+||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            35799999999999999999999999999999986 6888764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.28  E-value=0.00016  Score=90.05  Aligned_cols=39  Identities=33%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++|+|||||++||+||..|.+.|++|+++|+++.+||.-
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W   40 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW   40 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence            589999999999999999999999999999999999964

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.28  E-value=0.00059  Score=80.10  Aligned_cols=137  Identities=13%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEc-CCCCCcccccccccCCCCccc---CcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILE-QRDKLSWINLKFQFGVGYPNT---NQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie-~~~~~~~~~~~~~~~~~~~~~---g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      |+||+|+|.+|.-+|+++|+.|.+|+|+- +.+..           +-..|   -+|+..+.+...+.... .       
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i-----------~~~~Cnpsigg~~kg~L~~Eidalg-g-------   61 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTI-----------GEMSCNPSIGGIAKGHLVREIDALG-G-------   61 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGT-----------T--SSSSEEESTTHHHHHHHHHHTT---------
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccc-----------ccccchhhhccccccchhHHHhhhh-h-------
Confidence            46899999999999999999999999993 32222           11222   23332232222221111 0       


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc--c--cccccceeeechHHHHHHHHHhccC-CeEEe
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN--R--KIFSGYYSICSKHLNSYLIRALGIN-NFLFN  463 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~  463 (1428)
                                                 .....-....+++.-.+  .  ....+-+.++|..|.+.+.+.+... +..+.
T Consensus        62 ---------------------------~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~  114 (392)
T PF01134_consen   62 ---------------------------LMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII  114 (392)
T ss_dssp             ---------------------------SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE
T ss_pred             ---------------------------HHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE
Confidence                                       00000011223322211  1  1223456899999999999999874 55445


Q ss_pred             cceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCC
Q psy10545        464 NKTVEIITP--TS---IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       464 ~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .++|+++..  ..   |.+.+|..+.|+.||.|+|..
T Consensus       115 ~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf  151 (392)
T PF01134_consen  115 QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF  151 (392)
T ss_dssp             ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred             EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence            788988853  22   788899999999999999985

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG2614|consensus

Probab=97.26  E-value=0.00023  Score=81.78  Aligned_cols=36  Identities=36%  Similarity=0.702  Sum_probs=33.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      +.+|||||||++||++|..|++.|++|+|||++..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            468999999999999999999999999999998655

>TIGR02053 MerA mercuric reductase

Probab=97.26  E-value=0.00019  Score=89.32  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=35.7

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      |||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            699999999999999999999999999999976 777653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.25  E-value=0.00023  Score=87.68  Aligned_cols=43  Identities=37%  Similarity=0.435  Sum_probs=39.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +..++|+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            3568999999999999999999999999999999999999654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.25  E-value=0.0002  Score=91.51  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=37.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .+|||+|||||++|++||..|++.|.+|+|+|++ .+||.|.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            3699999999999999999999999999999997 8898764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.24  E-value=0.00024  Score=91.90  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            467999999999999999999999999999999999999764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.24  E-value=0.00021  Score=90.45  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=37.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceE
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYV  752 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s  752 (1428)
                      .|||+|||||+|||+||..|++.|++|+|+|++ ..||.+..
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            589999999999999999999999999999995 68887653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00058 glutathione reductase; Provisional

Probab=97.24  E-value=0.00027  Score=88.59  Aligned_cols=41  Identities=27%  Similarity=0.321  Sum_probs=37.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .+|||+|||||++|++||..+++.|.+|+|+|++ .+||.|-
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            4689999999999999999999999999999996 7888764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.23  E-value=0.00022  Score=95.38  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            357999999999999999999999999999999999999765

>PRK14727 putative mercuric reductase; Provisional

Probab=97.23  E-value=0.00021  Score=89.01  Aligned_cols=44  Identities=27%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +..++|++|||||++|++||..|++.|.+|+|+|+++.+||.|.
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~   56 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV   56 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence            34579999999999999999999999999999999889999775

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.22  E-value=0.0006  Score=89.55  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.++++|++|++++.|++|..++ +....|.+.+|+++.+|.||++++..
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r  244 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR  244 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence            345678888999999999999999997643 34567888999999999999999754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.21  E-value=0.00029  Score=84.58  Aligned_cols=43  Identities=19%  Similarity=0.073  Sum_probs=38.2

Q ss_pred             ccceeeecCCCcchHHHHHHHH-hCCCeEEEEccCCCCCCcceE
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQ-TAGISTIILEQRDKPGGRAYV  752 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La-~~G~~V~VlEa~~~~GGr~~s  752 (1428)
                      ...+|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.++.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            3578999999999999999764 679999999999999998873

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.20  E-value=0.00098  Score=79.83  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             cceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        438 GYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       438 ~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .+..++-..|.++|.+.+.+.| .++.+++|++|..+  .   |.+.+|. ++|+.||.|.|..+.
T Consensus       140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence            4667899999999999999888 78888899998733  3   6677776 999999999999755

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.16  E-value=0.00027  Score=88.24  Aligned_cols=56  Identities=14%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|...++. ..|.+.+|+++.+|.||++++..
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~  277 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRK  277 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCC
Confidence            346678888899999999999999999866554 45677788889999999998653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.14  E-value=0.00032  Score=87.28  Aligned_cols=41  Identities=29%  Similarity=0.430  Sum_probs=36.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEcc------CCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQ------RDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa------~~~~GGr~~  751 (1428)
                      +||++|||||++|++||.++++.|.+|+|+|+      ...+||.|.
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence            68999999999999999999999999999998      356677663

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.13  E-value=0.00034  Score=91.99  Aligned_cols=42  Identities=24%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            467999999999999999999999999999999999999764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.11  E-value=0.00076  Score=81.05  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~~  498 (1428)
                      .......+|.+.+.+.| .++++++|.+|..  +.   |.++++.++.||-||-|.|..|.+
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p  168 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYP  168 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSG
T ss_pred             cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCcc
Confidence            45677789999998888 7889999999963  33   666677899999999999998654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.11  E-value=0.00035  Score=84.56  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=39.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.+||++|||||++|.+||.++++.|.+|.++|+...+||.|-
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl   44 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL   44 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence            3579999999999999999999999999999999988999764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.09  E-value=0.0004  Score=89.27  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=35.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      +.++|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            4679999999999999999999999999999998765553

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.08  E-value=0.00044  Score=85.90  Aligned_cols=42  Identities=31%  Similarity=0.402  Sum_probs=38.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999998754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.07  E-value=0.00076  Score=58.88  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             EECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE
Q psy10545         13 LIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS   51 (1428)
Q Consensus        13 i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~   51 (1428)
                      |||+|+|||++|++|.+.  +.+|+|+|+++..+.+..+
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCcceeE
Confidence            899999999999999997  5799999999888433333

...

>KOG0399|consensus

Probab=97.07  E-value=0.00044  Score=86.19  Aligned_cols=42  Identities=31%  Similarity=0.427  Sum_probs=39.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .-++|+|||+|++||+||-+|-+.||.|+|+|+.+++||.+.
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            357999999999999999999999999999999999999764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.06  E-value=0.00049  Score=83.34  Aligned_cols=41  Identities=32%  Similarity=0.365  Sum_probs=39.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..+|+|||||++||+||+.|+++|+.|+|+|+.+..||++.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~  163 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL  163 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence            47999999999999999999999999999999999999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.05  E-value=0.0005  Score=88.57  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=39.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999764

>PLN02785 Protein HOTHEAD

Probab=97.04  E-value=0.0021  Score=81.20  Aligned_cols=69  Identities=22%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             HHHHHHHHHcCcEEEeCceeeEEEEeCC----eEEEEEec--CCcEE-------EcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        935 KALIKLFQNLGGNLILNSQVISIYVNNN----KVNKVHLK--NGQIF-------DADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       935 ~~L~~~l~~~G~~V~~~~~V~~I~~~~~----~v~~V~~~--~G~~i-------~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      ..+.......+.+|++++.|++|..+++    ++++|++.  +|.+.       ..+.||++++...+...|+-....|+
T Consensus       224 a~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~  303 (587)
T PLN02785        224 AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPK  303 (587)
T ss_pred             HHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCH
Confidence            3344444556799999999999999753    78999874  46432       23689999988777665655544555


Q ss_pred             hH
Q psy10545       1002 KK 1003 (1428)
Q Consensus      1002 ~~ 1003 (1428)
                      ..
T Consensus       304 ~~  305 (587)
T PLN02785        304 KE  305 (587)
T ss_pred             HH
Confidence            43

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.04  E-value=0.00044  Score=81.88  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      +.||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            469999999999999999999999999999987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.02  E-value=0.00052  Score=88.38  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999999764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.01  E-value=0.004  Score=74.97  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|.  ++   .|.+.+|+++.+|.||++++.
T Consensus       191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~  241 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGA  241 (364)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCC
Confidence            3466778888999999999999999985  22   467788989999999999974

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.01  E-value=0.00055  Score=84.82  Aligned_cols=42  Identities=38%  Similarity=0.485  Sum_probs=38.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            457999999999999999999999999999999999998653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.99  E-value=0.00061  Score=84.31  Aligned_cols=42  Identities=29%  Similarity=0.389  Sum_probs=39.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.++|+|||||++||+||..|++.|++|+|+|+.+.+||.++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.98  E-value=0.00053  Score=85.01  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC-CCeEEEEccC--------CCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQR--------DKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~--------~~~GGr~~  751 (1428)
                      .+|||||||||++|.+||..+++. |.+|+|+|+.        +.+||.|-
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl   52 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV   52 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence            469999999999999999999996 9999999984        57888663

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.96  E-value=0.0011  Score=87.30  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+.+.++++|++|++++.|++|..+ +++.+|++.+|+++.+|.||++++..
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG~~i~~D~Vi~a~G~~  237 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDGSSLEADLIVMAAGIR  237 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCCCEEEcCEEEECCCCC
Confidence            34566778889999999999999999754 44578889999999999999999753

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.95  E-value=0.028  Score=72.07  Aligned_cols=192  Identities=17%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC---e----EEE---cCCc--EEEeeEEEecCCCCCCC----CC--
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT---S----IRI---NNKK--IINANCIIDGRGLKNSQ----FD--  500 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~---~----v~l---~~g~--~~~a~lvI~AdG~~S~~----~~--  500 (1428)
                      ..++-..+...|.+.+.+.| .++..++|+++..+   +    |++   .+|+  +++|+.||.|.|..|..    ..  
T Consensus       227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~  306 (627)
T PLN02464        227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK  306 (627)
T ss_pred             cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence            34688899999999998888 78888899887532   2    333   2344  68999999999998652    11  


Q ss_pred             --cceEEEEEEEEEecCCcCC-CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHH---HHH
Q psy10545        501 --GIYQIFLGQQWNLSSPHGL-DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDML---KKS  570 (1428)
Q Consensus       501 --~~~q~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~---~~~  570 (1428)
                        ...+..-|..+.+...... ...+++.    ...+| ..++++|+ .+...++.|.....    ...+.++.   .+.
T Consensus       307 ~~~~I~p~kG~hlvl~~~~~~~~~~~i~~----~~~dg-r~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~  380 (627)
T PLN02464        307 AKPMICPSSGVHIVLPDYYSPEGMGLIVP----KTKDG-RVVFMLPW-LGRTVAGTTDSKTPITMLPEPHEDEIQFILDA  380 (627)
T ss_pred             CCCceEeeeeEEEecccccCCCCceEEec----CCCCC-CEEEEEec-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHH
Confidence              1133444655444321111 1122221    11122 24678999 66677775442211    11122333   333


Q ss_pred             HHHHHHHcCCccceeeeeeeeeecccCCc-h---hhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhc
Q psy10545        571 IKDYAIKNRWKLKNIEREEIGSIPIALKN-E---KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  640 (1428)
Q Consensus       571 l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~-~---~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~  640 (1428)
                      ..+++. .++....++..=.|.=|+.... +   .....+.++..  -+|.+--++|.-+-.....|+.+++.+
T Consensus       381 a~~~~~-~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~--~~~gli~i~GGk~Tt~R~mAe~~~d~~  451 (627)
T PLN02464        381 ISDYLN-VKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCE--EPDGLVTITGGKWTTYRSMAEDAVDAA  451 (627)
T ss_pred             HHHhhC-CCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEe--cCCCeEEEECChHHHHHHHHHHHHHHH
Confidence            333330 0133334444445666765321 1   11112333332  235555556655654444555554443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.95  E-value=0.0019  Score=75.41  Aligned_cols=105  Identities=19%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      |++|+|+|++|+.+|..|++.|++|+|+|+.+ +                ||.+...                       
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----------------gg~~~~~-----------------------   41 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P----------------GGQLTTT-----------------------   41 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C----------------Ccceeec-----------------------
Confidence            57899999999999999999999999999765 2                1111000                       


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                                           .         ....+|.       ....+....+...+.+.+.+.+ .++. ++|++++
T Consensus        42 ---------------------~---------~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~   83 (300)
T TIGR01292        42 ---------------------T---------EVENYPG-------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVD   83 (300)
T ss_pred             ---------------------c---------cccccCC-------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEE
Confidence                                 0         0000010       0011233456677777777667 4555 7888887


Q ss_pred             CCe----EEEcCCcEEEeeEEEecCCCC
Q psy10545        472 PTS----IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       472 ~~~----v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ...    |++.++.++++|.||.|.|..
T Consensus        84 ~~~~~~~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        84 LSDRPFKVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             ecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence            542    666677899999999999976

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=96.95  E-value=0.00058  Score=85.67  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQ  742 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa  742 (1428)
                      .+|||+|||||++|+.||..+++.|++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            358999999999999999999999999999996

>PLN02661 Putative thiazole synthesis

Probab=96.87  E-value=0.00076  Score=77.91  Aligned_cols=50  Identities=22%  Similarity=0.425  Sum_probs=40.1

Q ss_pred             hhHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhc-CCeEEEEcCCCCC
Q psy10545        297 KIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKL  346 (1428)
Q Consensus       297 ~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~-G~~V~lie~~~~~  346 (1428)
                      ..+.+|+..-.+..+.|++|+|+|+.|+.+|+.|+++ |++|+|||+...+
T Consensus        78 ~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         78 EMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            3444555555555677999999999999999999986 8999999987655

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.81  E-value=0.0043  Score=73.14  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCC-eEEEEEecCC----cEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNN-KVNKVHLKNG----QIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~-~v~~V~~~~G----~~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++ .+++|+.++.+.+|..+++ .+.||.+.+.    .++.++.||+|++..
T Consensus       133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~  195 (518)
T COG0029         133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL  195 (518)
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence            5678888888876 5899999999999999998 4448877432    467889999998653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.80  E-value=0.0021  Score=79.56  Aligned_cols=59  Identities=15%  Similarity=0.054  Sum_probs=45.0

Q ss_pred             ccceeeechHHHHHHHHHhccC-CeEEecceEEEEeC--C----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        437 SGYYSICSKHLNSYLIRALGIN-NFLFNNKTVEIITP--T----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       437 ~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~v~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+...+++..+.+.+.+.+.+. ++.+....|+++..  +    .|.+.+|..+.|+.||.|.|..
T Consensus        88 ~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf  153 (617)
T TIGR00136        88 ATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF  153 (617)
T ss_pred             ccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence            3456789999999999999876 44444556766632  2    2677888899999999999987

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.79  E-value=0.0016  Score=75.98  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=31.1

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ||+||||+|++|+.+|.+|++. ++.+|+|||.++..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccC
Confidence            8999999999999999999986 45799999999876

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.79  E-value=0.0013  Score=78.71  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+.+||...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            457999999999999999999999999999999999998764

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.77  E-value=0.01  Score=74.75  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CC--cEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G--~~i~ad~VV~A~~~~~  988 (1428)
                      ...++..+++.+.++|++|+++++|++|..+++++++|++.   +|  .++.|+.||+|++++.
T Consensus       127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            46788899999999999999999999999998888887763   34  3689999999999885

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.76  E-value=0.001  Score=84.59  Aligned_cols=42  Identities=31%  Similarity=0.407  Sum_probs=37.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC-CCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR-DKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~-~~~GGr~~  751 (1428)
                      .+|||||||+|++|.+||..+++.|.+|+|+|+. +.+||.|-
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            3689999999999999999999999999999974 46888763

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.75  E-value=0.00094  Score=79.76  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      .||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            3799999999999999999999999999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.75  E-value=0.0012  Score=82.13  Aligned_cols=41  Identities=32%  Similarity=0.465  Sum_probs=38.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            47999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.68  E-value=0.0014  Score=71.48  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=30.3

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ||+|||||++|++||..|++.|++|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.64  E-value=0.0018  Score=78.65  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ..+||+||||+|++|+.+|..|++.|  ++|+++|++...+.+.++|
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccccc
Confidence            45799999999999999999999965  8999999999887667766

>KOG4405|consensus

Probab=96.63  E-value=0.036  Score=63.19  Aligned_cols=112  Identities=16%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             cCCHHHHHHhhcCCHHHHHHHHhhcccccCC-CCchhHHHHHHHHhcc--ccc---eeeecCchHHHHHHHHHHHHHcCc
Q psy10545        873 WKSVYSIVSQFIKNDYLKQAFSFNSLFIGGN-PFSTSSIYTLIHALEY--EWG---IWFPKGGVGALIKALIKLFQNLGG  946 (1428)
Q Consensus       873 ~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~-p~~~s~~~~~~~~~~~--~~g---~~~~~gG~~~l~~~L~~~l~~~G~  946 (1428)
                      ..++.+|+....-.+.++.++-..-...+.+ +.....+...-.|+..  ..|   ..+|--|-+.|++.+-+.+.-.|+
T Consensus       222 e~~F~EyL~~~rltp~lqs~vl~aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlcAVfGg  301 (547)
T KOG4405|consen  222 ERPFSEYLKTMRLTPKLQSIVLHAIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLCAVFGG  301 (547)
T ss_pred             cCcHHHHHHhcCCChhhHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHHHHhcc
Confidence            5688899988777777777654221121211 1111112222222211  112   247777889999999888888899


Q ss_pred             EEEeCceeeEEEEeCCeE--EEEEecCCcEEEcCEEEEcC
Q psy10545        947 NLILNSQVISIYVNNNKV--NKVHLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       947 ~V~~~~~V~~I~~~~~~v--~~V~~~~G~~i~ad~VV~A~  984 (1428)
                      -.-++.+|+.|..+++..  ..+....|+++.++++|++-
T Consensus       302 IYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~  341 (547)
T KOG4405|consen  302 IYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP  341 (547)
T ss_pred             eEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence            999999999999887642  22334578889999998875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.62  E-value=0.0017  Score=82.76  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=38.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ...+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            357899999999999999999999999999999999999654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.61  E-value=0.0052  Score=77.37  Aligned_cols=52  Identities=15%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCC
Q psy10545        444 SKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       444 r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ...+.+.|.+.+.+.| .++.+++|+++...  .  |++.+|.+++++.||.|+|..
T Consensus       265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            3467778888887777 57778899988754  2  667788889999999999987

>KOG0042|consensus

Probab=96.60  E-value=0.0023  Score=75.27  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+||+|||||.+|..||.-.+-+|.+|.++|++|..-|..
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            35999999999999999999999999999999999876644

>KOG2960|consensus

Probab=96.60  E-value=0.00053  Score=70.45  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=36.0

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ..|++|||+|-|||+.||...+.+||++|+|||..-.++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            459999999999999999999989999999999998773

>KOG1335|consensus

Probab=96.59  E-value=0.0018  Score=72.83  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---C--cEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---G--QIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G--~~i~ad~VV~A~~~~  987 (1428)
                      .++..++.+.|.+.|.++++++.|+.+..++++.+.|++.+   |  ++++||.+.++++-.
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr  313 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR  313 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence            56888888889999999999999999999877556666543   3  578999999988543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.58  E-value=0.0016  Score=81.03  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +||++|||||++|+.||..+++.|.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR00275 flavoprotein, HI0933 family

Probab=96.54  E-value=0.0021  Score=78.07  Aligned_cols=53  Identities=15%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        444 SKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       444 r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ...+.+.|.+.+++.+ .++.+++|+++..++    |++ ++.++.++.||.|+|..|.
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~  161 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSY  161 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence            4677888888888777 688889999886432    444 5678999999999999864

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.54  E-value=0.0017  Score=76.96  Aligned_cols=134  Identities=16%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+.+|++||++|++|+|+|+++....+.           .             .....+.++.+.+.++
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a-----------~-------------~~~~~~ervca~Slgs   58 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPA-----------H-------------HTDGFAELVCSNSFRS   58 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCccc-----------c-------------cCccccccccchhhhh
Confidence            368899999999999999999999999999876551110           0             0000122333333333


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccce-eeechHHHHHHHHHhccC-CeEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYY-SICSKHLNSYLIRALGIN-NFLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~i~r~~l~~~L~~~~~~~-~~~~~~~~v~  468 (1428)
                      .......+.|..           .+..  +.+  +.+... ...++..++ +++|..|.+.|.+++.+. ++.+...+|+
T Consensus        59 ~~ll~a~Gll~~-----------em~~--lgs--l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~  123 (436)
T PRK05335         59 DSLTNAVGLLKE-----------EMRR--LGS--LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVT  123 (436)
T ss_pred             hhHHhcCCchHH-----------HHHH--hcc--hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchh
Confidence            332222233321           1111  111  122221 233445554 467777999999999765 4323356666


Q ss_pred             EEeCCeEEEcCCcEEEeeEEEecCCCCCC
Q psy10545        469 IITPTSIRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       469 ~i~~~~v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++.       +|      .||-|.|.-++
T Consensus       124 ~l~-------~~------~viiatG~~~s  139 (436)
T PRK05335        124 EIP-------ED------ITIIATGPLTS  139 (436)
T ss_pred             ccc-------cC------CEEEeCCCCch
Confidence            552       22      77888888655

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.54  E-value=0.0017  Score=80.45  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +|+|||||++|++||..|++.|.+|+|+|++. .||.|
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c   38 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTC   38 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccC
Confidence            79999999999999999999999999999975 66655

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=96.54  E-value=0.0025  Score=77.59  Aligned_cols=57  Identities=11%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++...+.++|.+.+.+.| .++.+++|.+++..  .  |.+.+| +++|+.||.|+|..|.
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence            46788899999999998887 67888899888642  2  455554 7999999999999864

>KOG2960|consensus

Probab=96.53  E-value=0.0013  Score=67.56  Aligned_cols=41  Identities=27%  Similarity=0.500  Sum_probs=36.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..||+|||+|-+||+|||..+++  ..+|.|+|++-.+||-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            35999999999999999999965  578999999999988654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.51  E-value=0.0019  Score=80.24  Aligned_cols=40  Identities=25%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      |.|++|||||++|+.||..+++.|++|+|+|++ ..||.|-
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~   40 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV   40 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence            468999999999999999999999999999986 4788764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.51  E-value=0.0029  Score=57.44  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=32.5

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCC
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPG  747 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~G  747 (1428)
                      +|+|||||+.|+-.|..|++.|.+|+|+|+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999988753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.49  E-value=0.0029  Score=78.66  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      +++|||||+|||++|+.|.+.+++.+|+|+|++...+.+++++-.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~   46 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK   46 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence            689999999999999999998767899999999888767877643

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.48  E-value=0.0029  Score=78.17  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=44.7

Q ss_pred             ceeeechHHHHHHHHHhcc----CC---eEEecceEEEEeCC-e----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGI----NN---FLFNNKTVEIITPT-S----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~----~~---~~~~~~~v~~i~~~-~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +..|+-..+-+.|.+.+.+    .|   .++.+++|++|... +    |++.+| +++|+.||-|-|..|.
T Consensus       205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            3567888888999988877    55   47889999999753 2    555554 7999999999998854

>KOG1238|consensus

Probab=96.47  E-value=0.037  Score=67.89  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=33.6

Q ss_pred             cccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCC
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKP  746 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~  746 (1428)
                      ...||.||||||-||...|.+|++. ..+|+|||++..+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3579999999999999999999997 6899999997543

>PRK02106 choline dehydrogenase; Validated

Probab=96.47  E-value=0.0021  Score=81.90  Aligned_cols=59  Identities=12%  Similarity=0.020  Sum_probs=46.2

Q ss_pred             HcCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        943 NLGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      ..+.+|++++.|++|..+++++++|++.+.    ..+.++.||+|++...+.+.|+.....+.
T Consensus       213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~  275 (560)
T PRK02106        213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPA  275 (560)
T ss_pred             CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCCh
Confidence            456999999999999999888999987543    24679999999999888776655444343

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.46  E-value=0.0032  Score=78.53  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=38.8

Q ss_pred             cccEEEECccHHHHHHHHHHhccCC--CCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNP--KLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~--~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      +.|++|||||+|||++|++|.++++  +.+|+|+|+++..+.+.+++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~   48 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTV   48 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEE
Confidence            3699999999999999999999755  78999999999886566654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG0029|consensus

Probab=96.44  E-value=0.0036  Score=76.96  Aligned_cols=47  Identities=32%  Similarity=0.468  Sum_probs=41.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      ...+|||||||+|||++|.+|.+.+  .+|+|+|.+...+.|+|.+=..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~t~~~~   60 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIYTFKSE   60 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeEEEecC
Confidence            4579999999999999999999975  6899999999997788877554

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.38  E-value=0.0045  Score=68.18  Aligned_cols=47  Identities=26%  Similarity=0.221  Sum_probs=37.7

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      ..+|+||||+|+|||..|..|+..+  ++|+|+|.+.+.+---=.||+-
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEgeqnlGGQAfWSf   50 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGEQNLGGQAFWSF   50 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcC--ceEEEEcccccccccceeeeec
Confidence            4789999999999999999999975  8999999997762112356653

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.38  E-value=0.0025  Score=79.43  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      ...++||+|||||.|||.||..+++.|.+|+|+||....+|.
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~   44 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH   44 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence            345789999999999999999999999999999998877653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.004  Score=76.23  Aligned_cols=41  Identities=27%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      +.+++|++|||||+||+++|++|.+.+++. ++|+|++...+
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~G   45 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVG   45 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcC
Confidence            446799999999999999999999998544 99999998764

>PRK13984 putative oxidoreductase; Provisional

Probab=96.36  E-value=0.0029  Score=81.41  Aligned_cols=42  Identities=31%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +.++|+|||+|++|++||..|++.|++|+|+|+.+.+||...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            467899999999999999999999999999999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.35  E-value=0.017  Score=70.87  Aligned_cols=50  Identities=22%  Similarity=0.367  Sum_probs=40.0

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEE--EEecCCcEEEcCEEEEcCCH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNK--VHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~--V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +.+.++++|+++++++.|.+|...++....  +...+++.+.+|.|+++.+.
T Consensus       184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~  235 (415)
T COG0446         184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE  235 (415)
T ss_pred             HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence            445567778999999999999987765444  56778889999999999854

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.35  E-value=0.0034  Score=77.80  Aligned_cols=40  Identities=25%  Similarity=0.459  Sum_probs=35.7

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..++|++|||||..|+++|+.|++..++.+|+|||+....
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            3568999999999999999999998788999999987544

>PLN02576 protoporphyrinogen oxidase

Probab=96.34  E-value=0.0045  Score=77.89  Aligned_cols=47  Identities=28%  Similarity=0.289  Sum_probs=39.3

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ...++|++|||||+|||++|++|.+.+ +.+|+|+|++...+.+.+++
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t~   55 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITSV   55 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeEe
Confidence            345689999999999999999999862 47999999998886566654

>PRK07208 hypothetical protein; Provisional

Probab=96.34  E-value=0.0043  Score=77.69  Aligned_cols=46  Identities=22%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ....|++|||||+|||++|++|.+.  +.+|+|+|+++..+.+.+++.
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~--g~~v~v~E~~~~~GG~~~s~~   47 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPVVGGISRTVT   47 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCceeeeec
Confidence            3467999999999999999999996  479999999998865666654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.33  E-value=0.0041  Score=68.95  Aligned_cols=42  Identities=26%  Similarity=0.516  Sum_probs=35.4

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS   51 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~   51 (1428)
                      +||++|||+|++|+.+|..|++.+  ++|+|||+++.++.+.|.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaYd   42 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAYD   42 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcccc
Confidence            389999999999999999888865  799999999999433343

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.31  E-value=0.0084  Score=75.43  Aligned_cols=51  Identities=16%  Similarity=0.279  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        445 KHLNSYLIRALGINN-FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       445 ~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+.+.+.+.+.+.| .++.+++|+++..+    .+++.+|..++++.||.|.|..
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            456667777776667 57778899888643    2667788889999999999976

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK02106 choline dehydrogenase; Validated

Probab=96.30  E-value=0.0037  Score=79.57  Aligned_cols=39  Identities=36%  Similarity=0.586  Sum_probs=34.4

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      |...||+||||+|+||+.+|.+|++. ++.+|+|||.++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence            34569999999999999999999994 5799999999964

>PRK06116 glutathione reductase; Validated

Probab=96.30  E-value=0.0036  Score=77.58  Aligned_cols=34  Identities=29%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++||||||||+++|.+|++.+  ++|+|||+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence            4799999999999999999999964  899999975

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.29  E-value=0.004  Score=76.61  Aligned_cols=42  Identities=29%  Similarity=0.471  Sum_probs=37.3

Q ss_pred             CCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          3 FEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         3 ~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ++++..+|++|||||.+|+++|+.|++..|+.+|+|+|+...
T Consensus         1 ~~~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~   42 (497)
T PRK13339          1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS   42 (497)
T ss_pred             CCCCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence            356778999999999999999999999888999999998433

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.0088  Score=68.92  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             eechHHHHHHHHHhccCCeEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        442 ICSKHLNSYLIRALGINNFLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +.-.+|.+.+.+++...+..+....|..++..  .  |++.+|. ++|+-||.|.|....
T Consensus        58 ~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~  116 (305)
T COG0492          58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR  116 (305)
T ss_pred             CchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence            45567788888888777733333777777644  2  6666665 999999999998854

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.24  E-value=0.006  Score=76.64  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=35.1

Q ss_pred             CCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          4 EKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         4 ~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+..+||+||||+|.||..+|.+|++  ++++|+|||.++..
T Consensus         3 ~~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~~   42 (542)
T COG2303           3 EMKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGPD   42 (542)
T ss_pred             cccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCCC
Confidence            35668999999999999999999994  67999999998643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.20  E-value=0.0046  Score=76.92  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++||||||||+.+|.+|++.+  ++|+|||++...
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~   40 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNV   40 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccc
Confidence            4699999999999999999999964  899999987666

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.20  E-value=0.0047  Score=76.64  Aligned_cols=57  Identities=12%  Similarity=-0.002  Sum_probs=43.7

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..|+-..+-+.|.+.+.+.| .++.++.|++++..+   |++.+| +++|+.||.|.|..+.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccccc
Confidence            45677788889998888888 688889999886533   555544 7999999999887654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=96.16  E-value=0.054  Score=64.06  Aligned_cols=131  Identities=18%  Similarity=0.304  Sum_probs=84.0

Q ss_pred             cCcccHHHHHHhhH--HHHhhcccCCHHHHHHhhcCCH-HHHHHHHhhc-ccccCCCCchhHHHHHHHHhccccceeeec
Q psy10545        852 KSFLTINDMLFILP--KLIKIKAWKSVYSIVSQFIKND-YLKQAFSFNS-LFIGGNPFSTSSIYTLIHALEYEWGIWFPK  927 (1428)
Q Consensus       852 ~~~~~~~~~~~~~~--~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~-~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~  927 (1428)
                      .++.+..+++..+.  ++..+ ...+..+++.+..-++ ..++++.... ..+|.+ .+..++.+++......+|.|.++
T Consensus        47 ~~F~sv~~l~~~lg~~~~~~~-t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~a~~gl~sV~  124 (368)
T PF07156_consen   47 FPFSSVEELLSALGGDDFLNL-TKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAGATGGLWSVE  124 (368)
T ss_pred             CCcCCHHHHHHHhCChHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeeeccCCceEec
Confidence            46677766665432  23232 2567888888775444 4456666433 344654 35665555554444456889999


Q ss_pred             CchHHHHHHHHHHHHHcCcEEEeCceeeEE-EEeCCe--EEEEEecC--C-cEEEcCEEEEcCCHHH
Q psy10545        928 GGVGALIKALIKLFQNLGGNLILNSQVISI-YVNNNK--VNKVHLKN--G-QIFDADIIVSNADIIN  988 (1428)
Q Consensus       928 gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I-~~~~~~--v~~V~~~~--G-~~i~ad~VV~A~~~~~  988 (1428)
                      ||..+|++.|.+   ..|.+| ++++|++| ...++.  ...|...+  + ..-.+|.||+|+|...
T Consensus       125 GGN~qI~~~ll~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~  187 (368)
T PF07156_consen  125 GGNWQIFEGLLE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ  187 (368)
T ss_pred             CCHHHHHHHHHH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence            999999999966   468999 99999999 333322  24455443  2 2345799999997743

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK07233 hypothetical protein; Provisional

Probab=96.14  E-value=0.0058  Score=75.51  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      +++|||||+|||++|+.|.+.+  .+|+|+|+++..+.++++++.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~s~~~~   44 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAASFEFG   44 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceeeeccC
Confidence            5899999999999999999975  7999999999887778887754

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.11  E-value=0.0064  Score=75.74  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=37.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccC----CCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYN----PKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~----~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .+++|||||.|||++|++|.+.+    .+.+|+|+|+++..+.++|++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~   49 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV   49 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence            36999999999999999998863    358999999999887677765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.11  E-value=0.0074  Score=74.25  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=39.0

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      +....+++|||||+|||++|.+|.+.+  ++|+++|++...+. +|.+-.
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG-~W~~~~   53 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGG-LWVYTP   53 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcc-eeecCC
Confidence            344689999999999999999999864  79999999988832 676643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=96.07  E-value=0.0057  Score=75.78  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC---e--EEE---cCC--cEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT---S--IRI---NNK--KIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~---~--v~l---~~g--~~~~a~lvI~AdG~~S~  497 (1428)
                      ...|+...+-++|.+.+.+.| .++.+++|++++.+   .  +++   .+|  .+++|+.||-|-|..|.
T Consensus       172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL  241 (483)
T ss_pred             CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence            356888899999999998878 78889999998742   2  332   223  26899999877777644

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.05  E-value=0.0067  Score=72.27  Aligned_cols=59  Identities=20%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcE-EEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKI-INANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~-~~a~lvI~AdG~~S~  497 (1428)
                      +.+|+-.++-.+|.+.+.+.| .+.++++|++|+.  ++   +.+.+|++ ++|+.||.|=|..|.
T Consensus       147 ~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad  212 (429)
T COG0579         147 GGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD  212 (429)
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence            355666778888888888777 7888999998874  31   45567766 999999999888754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.03  E-value=0.046  Score=67.96  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+.++++|++++++++|++|..++++ +.|.+.+|+++.+|.||++++.
T Consensus       225 ~~~L~~~gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~  272 (466)
T PRK07845        225 EEVFARRGMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGS  272 (466)
T ss_pred             HHHHHHCCcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecC
Confidence            34466779999999999999877666 4577778889999999999864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.00  E-value=0.0078  Score=74.94  Aligned_cols=38  Identities=34%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      +.+|+||||||+.||++|..|++++  ++|+|+|++...+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~G   39 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVG   39 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCC
Confidence            4699999999999999999999975  8999999888774

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.99  E-value=0.0066  Score=75.04  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  343 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~  343 (1428)
                      ++|++|+|+||+|+.+|+.+++.|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            578999999999999999999999999999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG1238|consensus

Probab=95.99  E-value=0.0064  Score=74.27  Aligned_cols=39  Identities=31%  Similarity=0.545  Sum_probs=34.5

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...||+||||||-||+.||.+|++. |+-+|++||.++..
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence            3579999999999999999999994 77899999998644

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.97  E-value=0.023  Score=67.41  Aligned_cols=67  Identities=28%  Similarity=0.415  Sum_probs=57.7

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      |.+.+.+|   ...++..|++.+.++|++++.+++|++|..+++++++|.+.+| ++.||.||+|++++..
T Consensus       125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            45555555   4789999999999999999999999999998888888988888 8999999999998753

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PLN02268 probable polyamine oxidase

Probab=95.97  E-value=0.0078  Score=74.34  Aligned_cols=43  Identities=23%  Similarity=0.249  Sum_probs=37.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      .+++|||||.|||++|++|.+.  +.+|+|+|+++..+.|+|+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGri~t~~   43 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGRVHTDY   43 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCceeeecC
Confidence            3799999999999999999885  479999999999977888753

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.97  E-value=0.0084  Score=72.04  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=34.4

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      -++|||||+|||++||+|.+++|+..|+|+|+++..+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G   38 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence            3799999999999999999999999999999997774

>PRK06370 mercuric reductase; Validated

Probab=95.96  E-value=0.0067  Score=75.45  Aligned_cols=34  Identities=29%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||+||||+++|.+|++.  +++|+|||+.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~   37 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERG   37 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecC
Confidence            469999999999999999999996  4899999986

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.93  E-value=0.0069  Score=75.52  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      |...||++||||||||+++|.+|++.  +++|+|||+.
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~   36 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKG   36 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc
Confidence            34579999999999999999999996  4899999975

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=95.90  E-value=0.0074  Score=75.20  Aligned_cols=37  Identities=27%  Similarity=0.280  Sum_probs=33.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ..++|++|||+|+||+++|+++++.+  .+|+|||+.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            35789999999999999999999964  79999999864

>PRK08275 putative oxidoreductase; Provisional

Probab=95.89  E-value=0.0072  Score=76.67  Aligned_cols=39  Identities=36%  Similarity=0.430  Sum_probs=35.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|+||+++|+++++.+++++|+|||+.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            468999999999999999999987667899999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.89  E-value=0.0071  Score=76.70  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=31.3

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      ...||++||||||||+++|.+|++.  +.+|+|+|++
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~   36 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKD   36 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Confidence            4469999999999999999999885  4899999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.89  E-value=0.0077  Score=74.88  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +.+||++||||||||+.+|.++++.+  ++|+|||+.+..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~   39 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTL   39 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcc
Confidence            34699999999999999999999964  899999987655

>KOG1800|consensus

Probab=95.84  E-value=0.0086  Score=67.71  Aligned_cols=41  Identities=22%  Similarity=0.168  Sum_probs=37.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~  751 (1428)
                      .+.|.|||+|+||+.+|++|.++  +.+|.|+|+.+.++|..+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR   62 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR   62 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence            35899999999999999999884  689999999999999876

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.82  E-value=0.0085  Score=75.63  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=37.2

Q ss_pred             CCCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         1 ~~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |++.+..++||+|||+|+|||++|+++++.   .+|+|||+....
T Consensus         1 ~~~~~~~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~   42 (536)
T PRK09077          1 MNTSPEHQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLS   42 (536)
T ss_pred             CCCCccccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCC
Confidence            777777789999999999999999999873   699999998765

>TIGR03452 mycothione_red mycothione reductase

Probab=95.79  E-value=0.0063  Score=75.20  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +||++|||+|++|..||..  ..|.+|+|+|+ +.+||.|-
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~   39 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL   39 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence            5899999999999998654  47999999998 56788763

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.76  E-value=0.0092  Score=73.74  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .||++|||||+||+++|.+|++.+  ++|+|||+.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~   37 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNA   37 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCC
Confidence            599999999999999999999964  89999998754

>PRK07846 mycothione reductase; Reviewed

Probab=95.76  E-value=0.0067  Score=74.92  Aligned_cols=38  Identities=29%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      +||++|||||++|.+||..  ..|.+|+|+|+. .+||.|-
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~   38 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL   38 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence            3899999999999999876  469999999984 5777653

>PRK12839 hypothetical protein; Provisional

Probab=95.74  E-value=0.011  Score=74.91  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             CCCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         1 ~~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |..++..++|++|||+|.||+++|+.+.+.+  .+|+|||+....
T Consensus         1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~   43 (572)
T PRK12839          1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTC   43 (572)
T ss_pred             CCCCcCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence            6667788999999999999999999998864  799999998776

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.73  E-value=0.01  Score=73.86  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..||++||||||||+++|.+|++.  +++|+|||+.. .
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~-~   38 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEK-L   38 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccc-c
Confidence            469999999999999999999996  47999999875 5

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.73  E-value=0.0088  Score=72.44  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=42.0

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|++++.++    |++.+ .++.|+.||.|.|..++
T Consensus       140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-~~i~a~~vV~aaG~~~~  201 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-GSYQANKLVVTAGAWTS  201 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-CEEEeCEEEEecCcchH
Confidence            45677788888988887777 677888999887432    44444 47999988888876544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.72  E-value=0.0075  Score=76.85  Aligned_cols=39  Identities=23%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+++++.+++++|+|||+....
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            368999999999999999999987777899999998665

>KOG2820|consensus

Probab=95.71  E-value=0.029  Score=62.81  Aligned_cols=71  Identities=14%  Similarity=0.075  Sum_probs=52.8

Q ss_pred             EEEcCCCccccc-ccceeeechHHHHHHHHHhccCC-eEEecceEEEEe----CCe---EEEcCCcEEEeeEEEecCCCC
Q psy10545        425 QVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT----PTS---IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       425 ~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~----~~~---v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+.++++..++- ..+.++....-.+++...+.+.| +++.+..|..+.    +..   |.+.+|..+.|+-+|-+-|+-
T Consensus       132 ~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  132 NIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             CccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            445555444433 45778888888999999999998 677788887775    222   667788889999999999974

>PTZ00052 thioredoxin reductase; Provisional

Probab=95.68  E-value=0.0099  Score=74.33  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      +.+||++||||||||+.+|.++++.+  ++|+|||+.
T Consensus         3 ~~~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~   37 (499)
T PTZ00052          3 TFMYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYV   37 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHhCC--CeEEEEecc
Confidence            34799999999999999999999964  899999964

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.63  E-value=0.011  Score=73.66  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      +||++|||+||||+++|.+|++.  +++|+|||++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~   36 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKK   36 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC
Confidence            69999999999999999999986  4899999975

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=95.61  E-value=0.011  Score=75.34  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+.+++.+++.+|+|||+....
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            468999999999999999999987777899999998765

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.60  E-value=0.013  Score=73.07  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL   41 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~   41 (1428)
                      .+||++|||||+||+++|.+|++.  +++|+|||+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~   34 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL--GKKVALIEK   34 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeC
Confidence            359999999999999999999985  489999998

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.60  E-value=0.072  Score=65.59  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=36.4

Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+++.|+++++++.|++|..++ . + +.+.+|+++.+|.||+++|..
T Consensus       186 ~~~l~~~gV~v~~~~~v~~i~~~~-~-~-v~~~~g~~i~~D~vi~a~G~~  232 (427)
T TIGR03385       186 EEELKKHEINLRLNEEVDSIEGEE-R-V-KVFTSGGVYQADMVILATGIK  232 (427)
T ss_pred             HHHHHHcCCEEEeCCEEEEEecCC-C-E-EEEcCCCEEEeCEEEECCCcc
Confidence            344566799999999999997543 3 2 556788899999999998653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02568 polyamine oxidase

Probab=95.59  E-value=0.018  Score=72.21  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=36.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccC---CCCeEEEEccCCCCCCceeE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYN---PKLNVLLLELSSSVKNHIWS   51 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~---~~~~v~~~~~~~~~~~~tw~   51 (1428)
                      .+|++|||||+|||++|.+|.+.+   .+.+|+|+|++...+.+.+.
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t   51 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT   51 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence            479999999999999999999764   34899999999888544443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.58  E-value=0.011  Score=72.85  Aligned_cols=35  Identities=31%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      +||++||||||||+++|.+|++.  +++|+|||+++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCc
Confidence            69999999999999999999996  489999998864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.58  E-value=0.012  Score=73.21  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +||++|||+||||+++|.++++.  +++|+|||++...
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~   38 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTL   38 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCce
Confidence            59999999999999999999996  4899999976555

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.58  E-value=0.011  Score=73.73  Aligned_cols=33  Identities=30%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL   41 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~   41 (1428)
                      .+||++|||+||||+++|.++++.  +++|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC--CCeEEEEec
Confidence            479999999999999999999996  489999997

>TIGR02730 carot_isom carotene isomerase

Probab=95.57  E-value=0.014  Score=73.12  Aligned_cols=44  Identities=27%  Similarity=0.272  Sum_probs=38.2

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      ||++|||+|++||++|..|++.+  .+|+|+|++...+.++.+|..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~~~~   44 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGYFER   44 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeEecc
Confidence            69999999999999999999965  799999999988656666543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG1276|consensus

Probab=95.56  E-value=0.014  Score=67.25  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=36.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ..+++|||||.|||++||+|++.+|+.+|+|.|..++.+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            469999999999999999999999999999999998884

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.56  E-value=0.012  Score=75.28  Aligned_cols=43  Identities=14%  Similarity=0.074  Sum_probs=36.0

Q ss_pred             CCCCCC---ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          1 MNFEKN---YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         1 ~~~~~~---~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |+++|.   .++||+|||+|.|||++|+++++.  +.+|+|||+....
T Consensus         2 ~~~~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~~~   47 (598)
T PRK09078          2 MMSAYKIIDHKYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVFPT   47 (598)
T ss_pred             CcccccccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence            555555   368999999999999999999885  4799999998655

>PLN02507 glutathione reductase

Probab=95.54  E-value=0.0096  Score=74.40  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL   41 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~   41 (1428)
                      +||++|||+||||+.+|.++++.+  ++|+|||+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFG--AKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEec
Confidence            599999999999999999999964  89999996

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.52  E-value=0.011  Score=72.91  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      +||++|||+||||+.+|.++++.+  ++|+|||+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~   34 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAK   34 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CcEEEeccc
Confidence            599999999999999999999965  899999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.50  E-value=0.014  Score=72.81  Aligned_cols=35  Identities=29%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .||++|||||+||+++|.+|++.  +++|+|||+ +..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~-~~~   35 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL--GLKVALVEK-EYL   35 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC--CCeEEEEec-CCC
Confidence            38999999999999999999986  489999998 555

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.50  E-value=0.013  Score=70.66  Aligned_cols=57  Identities=12%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             eeeechHHHHHHHHHhccC-C-eEEecceEEEEeCCeEEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGIN-N-FLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++-..+...|.+.+.+. | .++.+++|++++...|++.+| +++|+.||-|.|..+.
T Consensus       140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g-~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRG-DVHADQVFVCPGADFE  198 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCC-cEEeCEEEECCCCChh
Confidence            3567778888888887654 6 677888999997666777655 5789999999998764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK14694 putative mercuric reductase; Provisional

Probab=95.48  E-value=0.014  Score=72.74  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=31.8

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      ..+||++|||||+||+++|.+|++.  +++|+|||++
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~   38 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATER--GARVTLIERG   38 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEcc
Confidence            4579999999999999999999996  4799999976

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.39  E-value=0.015  Score=74.26  Aligned_cols=38  Identities=29%  Similarity=0.464  Sum_probs=33.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ++||+|||+|.|||++|+++++..++.+|+|||+.+..
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            58999999999999999999886446899999998755

>PRK07846 mycothione reductase; Reviewed

Probab=95.37  E-value=0.11  Score=64.35  Aligned_cols=43  Identities=14%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       944 ~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .|++++++++|++|..++++ ..|.+.+|+++.+|.||++++..
T Consensus       219 ~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~  261 (451)
T PRK07846        219 KRWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRV  261 (451)
T ss_pred             cCeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCc
Confidence            47899999999999876665 45777788899999999998653

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=95.36  E-value=0.016  Score=70.97  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCC-CeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPK-LNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~-~~v~~~~~~~   43 (1428)
                      .++|++|||||.+|+++|++|+++. + .+|+|||++.
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~   65 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGW   65 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccc
Confidence            4789999999999999999999852 3 4899999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=95.36  E-value=0.017  Score=72.37  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.||+++|+++++.+  .+|+|||+.+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~   96 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVA   96 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCC
Confidence            3689999999999999999999964  799999999876

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.36  E-value=0.017  Score=70.82  Aligned_cols=56  Identities=9%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCC-----cEEEeeEEEecCCCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNK-----KIINANCIIDGRGLKNS  497 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g-----~~~~a~lvI~AdG~~S~  497 (1428)
                      ++-..+-+.|.+.+.+.| .++.+++|++++.+  .  +.+.++     .+++|+.||.|.|..+.
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            344477788888888888 67888899988642  2  333322     37999999999999864

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=95.35  E-value=0.02  Score=62.12  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+++|||+|+||+++|+.|.+.+  .+|+++|++.-.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~Gv   36 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGV   36 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCc
Confidence            47999999999999999999965  799999998755

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=95.35  E-value=0.016  Score=64.35  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      +||++|||||+||++++.+|.+++  +++.||-.+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCChh
Confidence            689999999999999999999975  78888886643

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=95.34  E-value=0.015  Score=73.92  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=35.2

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ++||+|||+|+|||++|+.+++.+++++|+|||+....+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~   41 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR   41 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence            689999999999999999999877778999999997663

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.33  E-value=0.13  Score=63.85  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            3799999999999999999999999999998653

>PRK13748 putative mercuric reductase; Provisional

Probab=95.33  E-value=0.016  Score=74.13  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..||++||||||||+++|.+|++.+  ++|+|||++ ..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~  132 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TI  132 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cc
Confidence            4699999999999999999999964  799999987 44

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.27  E-value=0.019  Score=72.86  Aligned_cols=36  Identities=33%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ..++||+|||+|+|||++|+.+++.+  .+|+|||+.+
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAG--KRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            45799999999999999999999864  7999999998

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.27  E-value=0.02  Score=68.70  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      +++|+|+|++|+.+|++||+.|++|+|+|+++..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            4678999999999999999999999999988754

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.24  E-value=0.018  Score=69.90  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             eeechHHHHHHHHHhccCC--eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN--FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .++-..+-+.|.+.+.+.|  .+..++.+..+..+    .|.+.+|. +.|+.||-|.|..+.
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            4555788899999998887  45568888888764    25665555 999999999998754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.23  E-value=0.02  Score=71.86  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .|++|||+|++||++|..|++.+  .+|+|+|++...+.++++|
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~t~   43 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAGTF   43 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccee
Confidence            58999999999999999999964  7999999998886566555

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07121 hypothetical protein; Validated

Probab=95.21  E-value=0.021  Score=71.64  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.||+++|+++++.+  .+|+|||+.+..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~   55 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGA   55 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence            4689999999999999999999964  799999998776

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.19  E-value=0.021  Score=62.06  Aligned_cols=51  Identities=25%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeE----EE---EEecCCcEEEcCEEEEcCCH
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKV----NK---VHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v----~~---V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+.+.+...++++++++.|.+|....+.+    ..   +...++.++.+|+||+|+|.
T Consensus        63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~  120 (201)
T PF07992_consen   63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS  120 (201)
T ss_dssp             HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred             ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence            44555556688888888888888777642    11   23345567888888888863

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=95.18  E-value=0.02  Score=71.89  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCcee
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIW   50 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw   50 (1428)
                      .++||+|||+| ||+++|+++++.+  .+|+|||+.+.. ++-.|
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg~t~~   47 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGGTTAY   47 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCcceec
Confidence            47899999999 9999999999864  799999999876 43333

>PLN02785 Protein HOTHEAD

Probab=95.16  E-value=0.018  Score=72.97  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ..||+||||+|.||+.+|.+|++   +.+|+|||.++.
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            35999999999999999999999   279999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.15  E-value=0.015  Score=71.22  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|..+. .  +.+|+|||+.+..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~--G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-K--DLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-c--CCCEEEEecCCCC
Confidence            4789999999999999999974 2  5899999998766

>PRK09897 hypothetical protein; Provisional

Probab=95.14  E-value=0.021  Score=71.02  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ++|+|||||++|+++|.+|.+....++|+|+||+...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            5899999999999999999887666899999998765

>PRK14727 putative mercuric reductase; Provisional

Probab=95.14  E-value=0.023  Score=70.85  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..||++|||+|+||+.+|.+|++.+  ++|++||++...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~   51 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVI   51 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcc
Confidence            4699999999999999999999964  799999987656

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.13  E-value=0.022  Score=72.65  Aligned_cols=40  Identities=20%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCC-CCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNP-KLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~-~~~v~~~~~~~~~~   46 (1428)
                      .++||+|||+|.|||++|+++++.++ +++|+|||+....+
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            46899999999999999999998753 37999999987653

>TIGR02053 MerA mercuric reductase

Probab=95.13  E-value=0.019  Score=71.56  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ||++||||||||+++|.++++.+  ++|+|||+++
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCc
Confidence            79999999999999999999964  8999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=95.06  E-value=0.022  Score=71.67  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||+|+||..+|.++++.+  ++|+|||++
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~   80 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKD   80 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEecc
Confidence            5799999999999999999999964  899999986

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=95.04  E-value=0.03  Score=65.85  Aligned_cols=45  Identities=29%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ...|+||||+|+|||+.|+.|.+.+  .+|+|+|.+...+-|.|..=
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~t~r   50 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSLTAR   50 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeEEEe
Confidence            4689999999999999999999976  68999999988866666543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=95.03  E-value=0.024  Score=71.79  Aligned_cols=57  Identities=11%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEc---CC--cEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRIN---NK--KIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~---~g--~~~~a~lvI~AdG~~S~  497 (1428)
                      .++-..+-.++...+.+.| .++.+++|+++..+  .   |++.   +|  .+++|+.||-|.|..+.
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            5677788888888888888 78888999988632  2   4442   23  47999999999998754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=94.95  E-value=0.022  Score=70.00  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ||+|||+|+|||++|+++++.+  .+|+|||+.+..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccc
Confidence            8999999999999999999965  799999999874

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.93  E-value=0.03  Score=71.39  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..++||+|||+|+||+++|+++++.+  .+|+|||+....
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~   44 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVF   44 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCC
Confidence            34799999999999999999999864  799999999876

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.92  E-value=0.027  Score=69.99  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=36.5

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      +++|||||+|||++|++|.+.+  ++|+|+|+++..+.+++++.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~s~~   42 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVAAWK   42 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcceeE
Confidence            4899999999999999999965  79999999988866777654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02676 polyamine oxidase

Probab=94.89  E-value=0.032  Score=69.42  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW   50 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw   50 (1428)
                      ...+|++|||||++||++|++|.+.+. .+|+|+|++...+.+.+
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~-~~v~vlE~~~~~GG~~~   67 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGI-EDILILEATDRIGGRMR   67 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCC-CcEEEecCCCCCCCcce
Confidence            456899999999999999999999752 26999999988854444

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=94.87  E-value=0.035  Score=68.47  Aligned_cols=39  Identities=26%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             cccEEEECccHHHHHHHHHHhccC--CCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYN--PKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~--~~~~v~~~~~~~~~~   46 (1428)
                      ..+++|||||+|||++|++|.+.+  ++.+|.|+|+.+..+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            468999999999999999999875  678999999998884

>TIGR01810 betA choline dehydrogenase

Probab=94.74  E-value=0.025  Score=71.60  Aligned_cols=35  Identities=37%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |+||||+|+||+.+|.+|++. +.++|+|||.++..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~   35 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSD   35 (532)
T ss_pred             CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCC
Confidence            899999999999999999986 35799999999643

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.71  E-value=0.032  Score=70.33  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             EEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545         11 FILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus        11 ~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      +||||||.+||++|.+|++.+  .+|+|+|++...+.++.+|-.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~t~~~   42 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAGVLED   42 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceEEEec
Confidence            589999999999999999964  799999999988666766644

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.67  E-value=0.027  Score=62.48  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPG  747 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~G  747 (1428)
                      ...|.|||||++|.-|||+++++|.+|.++|-++.-+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            4568999999999999999999999999999886543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.66  E-value=0.032  Score=71.20  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=32.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+++++.  +.+|+|||+....
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~~~   47 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVFPT   47 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCCC
Confidence            468999999999999999999885  4799999998665

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.65  E-value=0.029  Score=71.46  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...++|++|||+|+||+++|+++++.+  .+|+|||+.+..
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~   46 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHF   46 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCC
Confidence            345789999999999999999998864  799999998766

>PRK10262 thioredoxin reductase; Provisional

Probab=94.63  E-value=0.033  Score=65.71  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      ....+|++||||||||+++|..|.+.+  ++++++|..
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~   38 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM   38 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee
Confidence            345799999999999999999999865  689999944

>PRK07804 L-aspartate oxidase; Provisional

Probab=94.57  E-value=0.035  Score=70.22  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+++++.  +.+|+|||+....
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~~~   51 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAALD   51 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccCCC
Confidence            468999999999999999999885  4799999998765

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.56  E-value=0.036  Score=71.04  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+++++.  +.+|+|||+.+..
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~~~   64 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLFPT   64 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccCCC
Confidence            368999999999999999999885  4799999998765

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.52  E-value=0.04  Score=70.80  Aligned_cols=37  Identities=24%  Similarity=0.125  Sum_probs=32.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|.++++.  +.+|+|||+.+..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~~~   43 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSLFG   43 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccCCC
Confidence            468999999999999999999886  4799999998654

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.52  E-value=0.034  Score=70.62  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|.|||++|+++++.  +.+|+|||+.+..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~~~   40 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVFPT   40 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccCCC
Confidence            468999999999999999999885  4799999998655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1428
4dgk_A	501	Crystal Structure Of Phytoene Desaturase Crti From		1e-150
3vjd_A	293	Crystal Structure Of The Y248a Mutant Of C(30) Caro		1e-11
2zco_A	293	Crystal Structure Of The C(30) Carotenoid Dehydrosq		2e-11
4e9u_A	287	Crystal Structure Of Dehydrosqualene Synthase (Crtm		2e-11
4f6v_A	292	Crystal Structure Of Dehydrosqualene Synthase (Crtm		2e-11
3ae0_A	293	Crystal Structure Of The C(30) Carotenoid Dehydrosq		2e-11
3adz_A	293	Crystal Structure Of The C(30) Carotenoid Dehydrosq		1e-10
4hd1_A	294	Crystal Structure Of Squalene Synthase Hpnc From Al		7e-08
1ezf_A	340	Crystal Structure Of Human Squalene Synthase Length		2e-04
3lee_A	340	Crystal Structure Of The Human Squalene Synthase Co		2e-04
3vj8_A	343	Crystal Structure Of The Human Squalene Synthase Le		3e-04

>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea Ananatis Length = 501

Iteration: 1
 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/473 (52%), Positives = 330/473 (69%), Gaps = 1/473 (0%)
Query: 729  RLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYV 788
            RLQ AGI  ++LEQRDKPGGRAYVY+  GF FDAGPTVITDP++I+ LF L+  +++ YV
Sbjct: 19   RLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELFALAGKQLKEYV 78
Query: 789  NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848
             LLP+ PFYRL W   K  NY+++   LE QI +FN  D++GYR FL+YS+ VFKEGYL 
Sbjct: 79   ELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLK 138
Query: 849  FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTS 908
              +  FL+  DML   P+L K++AW+SVYS V+ +I++++L+QAFSF+SL +GGNPF+TS
Sbjct: 139  LGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATS 198
Query: 909  SIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYXXXXXXXXXX 968
            SIYTLIHALE EWG+WFP+GG GAL++ +IKLFQ+LGG ++LN++V  +           
Sbjct: 199  SIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVH 258
Query: 969  XXXGQIFDADIIVSNADIINTYRNLLGQYAFGXXXXXXXXXXXMSNSLFVIYFGLSEQYT 1028
               G+ F    + SNAD+++TYR+LL Q+              MSNSLFV+YFGL+  + 
Sbjct: 259  LEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHD 318
Query: 1029 HLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPN 1088
             LAHHT+ F   Y++ I+ IF  +   ++ S+YLH+P VTD SLAP GC ++Y L PVP+
Sbjct: 319  QLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPH 378
Query: 1089 LXXXXXXXXXXXXKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSF 1148
            L            KL++ +F YLEQ+ +P LR +L+T R+FTP DF+D L +Y GSAFS 
Sbjct: 379  LGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSV 438
Query: 1149 APLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKLFD 1201
             P+LTQSAWFRPHNRDK +TNLY VGAGTHPGA    +  GS   ++ + L D
Sbjct: 439  EPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGV-IGSAKATAGLMLED 490

>pdb|3VJD|A Chain A, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Length = 293

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 18   HKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 77
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 78   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 122
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  GYCY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 123  FTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 182
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 183  FENERIYF 190

>pdb|2ZCO|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Length = 293

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 18   HKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 77
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 78   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 122
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  GYCY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 123  FTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 182
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 183  FENERIYF 190

>pdb|4E9U|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From S. Aureus Complexed With A Thiocyanate Inhibitor Length = 287

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 12   HKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 71
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 72   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 116
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  GYCY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 117  FTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 176
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 177  FENERIYF 184

>pdb|4F6V|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From S. Aureus Complexed With Bph-1034, Mg2+ And Fmp. Length = 292

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 17   HKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 76
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 77   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 121
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  GYCY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 122  FTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 181
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 182  FENERIYF 189

>pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Complexed With Geranylgeranyl Thiopyrophosphate Length = 293

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 18   HKIMKKHSKSFSYAADLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 77
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 78   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 122
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  GYCY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 123  FTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 182
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 183  FENERIYF 190

>pdb|3ADZ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Complexed With Intermediate Pspp Length = 293

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 1183 NKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVID--------NQICGNRSKFL 1234
            +KI+K  SKSFS A  L     R  V  +YA CR  DD ID        NQI  +     
Sbjct: 18   HKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE 77
Query: 1235 KKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVM 1294
            K      H               F+      +ALQ +    +      +  +D    D  
Sbjct: 78   KYPYEYHH---------------FQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQH 122
Query: 1295 ERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK-DTLNCARNLGIAFQLTNISRDVIDD 1353
               + T  E  G CY VAGT+G ++  ++   E   T + AR LG + QL NI RDV +D
Sbjct: 123  FTMFETDAELFGACYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGED 182
Query: 1354 FYVGRCYL 1361
            F   R Y 
Sbjct: 183  FENERIYF 190

>pdb|4HD1|A Chain A, Crystal Structure Of Squalene Synthase Hpnc From Alicyclobacillus Acidocaldarius Length = 294

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 1195 SAIKLFDPV-IRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKR 1253
            S + LF P  +R     +YA+CR  DD+ D +  G+R             L     + +R
Sbjct: 30   SVVSLFVPRHLRPHFYSVYAFCRGVDDLGD-EFAGDRXA----------ALDAYEEELRR 78
Query: 1254 ACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAG 1313
            A  G +   PAF ALQ  I+  + P       ++    D  + TY T ++   YC + A 
Sbjct: 79   AFAG-EATTPAFRALQFTIATCNLPXEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSAD 137
Query: 1314 TIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLP 1362
             +G ++  + G  + +    +     A Q+ N  +D+  D  +GR Y+P
Sbjct: 138  PVGRLVLGIFGCLDDERARLSDATCTALQVANHXQDIDRDLALGRIYVP 186

>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
            K +   S+SF++ I+  D  +R  V + Y   R  D + D+         ++K V + H 
Sbjct: 15   KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTIS-----VEKKVPLLHN 69
Query: 1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
                  +     +  K K+   L     IS+       L E       D+  R  I + E
Sbjct: 70   FHSFLYQPDWRFMESKEKDRQVLEDFPTISLE---FRNLAEKYQTVIADICRRMGIGMAE 126
Query: 1304 TLG-----------YCYHVAGTIGLIIAHLIGVKE-------KDTLNCARNLGIAFQLTN 1345
             L            YC++VAG +G+ ++ L    E       +DT   A ++G+  Q TN
Sbjct: 127  FLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTER-ANSMGLFLQKTN 185
Query: 1346 ISRDVIDDFYVGRCYLPLD-WLR 1367
            I RD ++D   GR + P + W R
Sbjct: 186  IIRDYLEDQQGGREFWPQEVWSR 208

>pdb|3LEE|A Chain A, Crystal Structure Of The Human Squalene Synthase Complexed With Bph- 652 Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
            K +   S+SF++ I+  D  +R  V + Y   R  D + D+         ++K V + H 
Sbjct: 15   KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTIS-----VEKKVPLLHN 69
Query: 1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
                  +     +  K K+   L     IS+       L E       D+  R  I + E
Sbjct: 70   FHSFLYQPDWRFMESKEKDRQVLEDFPTISLE---FRNLAEKYQTVIADICRRMGIGMAE 126
Query: 1304 TLG-----------YCYHVAGTIGLIIAHLIGVKE-------KDTLNCARNLGIAFQLTN 1345
             L            YC++VAG +G+ ++ L    E       +DT   A ++G+  Q TN
Sbjct: 127  FLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTER-ANSMGLFLQKTN 185
Query: 1346 ISRDVIDDFYVGRCYLPLD-WLR 1367
            I RD ++D   GR + P + W R
Sbjct: 186  IIRDYLEDQQGGREFWPQEVWSR 208

>pdb|3VJ8|A Chain A, Crystal Structure Of The Human Squalene Synthase Length = 343

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
            K +   S+SF++ I+  D  +R  V + Y   R  D + D+         ++K V + H 
Sbjct: 18   KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTIS-----VEKKVPLLHN 72
Query: 1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
                  +     +  K K+   L     IS+       L E       D+  R  I + E
Sbjct: 73   FHSFLYQPDWRFMESKEKDRQVLEDFPTISLE---FRNLAEKYQTVIADICRRMGIGMAE 129
Query: 1304 TLG-----------YCYHVAGTIGLIIAHLIGVKE-------KDTLNCARNLGIAFQLTN 1345
             L            YC++VAG +G+ ++ L    E       +DT   A ++G+  Q TN
Sbjct: 130  FLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTER-ANSMGLFLQKTN 188
Query: 1346 ISRDVIDDFYVGRCYLPLD-WLR 1367
            I RD ++D   GR + P + W R
Sbjct: 189  IIRDYLEDQQGGREFWPQEVWSR 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1428
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-107
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	3e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	1e-82
3acx_A	293	Dehydrosqualene synthase; CRTM, carotenoid biosynt	4e-64
3vj8_A	343	Squalene synthase; farnesyl-diphosphate farnesyltr	3e-43
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-17
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	8e-17
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	5e-16
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-15
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-15
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-14
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	1e-14
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-14
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	4e-14
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-13
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-11
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-11
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-10
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-10
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	5e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-09
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-09
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-08
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	6e-08
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	2e-07
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-07
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	6e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	2e-04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	7e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	4e-04
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	4e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	6e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	6e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	7e-04
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	9e-04

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score =  344 bits (885), Expect = e-107
 Identities = 79/467 (16%), Positives = 153/467 (32%), Gaps = 71/467 (15%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG+GG+  A RL  AG    + E+    GGR       GF   +G   +  PN      
Sbjct: 7    GAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHML-PNGPGGPL 65

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
                  +E  VN++  +                     +   + K N + +KG++   + 
Sbjct: 66   ACFLKEVEASVNIVRSEM------------------TTVRVPLKKGNPDYVKGFK---DI 104

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQ---AFS 894
            S   F    LS+  +  +     L I+       +  S+ + +   + +++L +   +F 
Sbjct: 105  SFNDFPS-LLSYKDRMKI----ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFC 159

Query: 895  FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
              +L +  +      ++ +I  +    G   P+GG   +I AL  +    GG +    +V
Sbjct: 160  GWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEV 219

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
              I + N K   + + + +I DAD+++SN     T        +         +   +  
Sbjct: 220  SKILIENGKAAGI-IADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQP 278

Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
            S  +    L+     + H  +      ++                  ++  +  D  LAP
Sbjct: 279  SAGI-KICLAADEPLVGHTGVLLTPYTRR---------------INGVNEVTQADPELAP 322

Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
             G         V   +  ++    E           L++   P  R       +     +
Sbjct: 323  PGKHLTMCHQYVAPENVKNLESEIEMGLED------LKEI-FPGKR-----YEVLLIQSY 370

Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA 1181
             D             P+   ++   P N     + LY VG G     
Sbjct: 371  HD-----------EWPVNRAASGTDPGNETP-FSGLYVVGDGAKGKG 405

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL----SWINLK-FQFGVG----YPNTNQGLWN 368
           GAG+GG+  A RL  AG    + E+        + ++ K FQ   G     PN   G   
Sbjct: 7   GAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLA 66

Query: 369 SIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQN------DISSSQYMLIKPLITYSWP 422
                 LK+    +N++  E+ ++V+  +   + +      DIS + +  +         
Sbjct: 67  CF----LKEVEASVNIVRSEM-TTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKI 121

Query: 423 SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLF 462
           +  +   + NR   S   +     ++   +     ++F  
Sbjct: 122 ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKF-ADSFCG 160

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score =  276 bits (709), Expect = 1e-82
 Identities = 71/474 (14%), Positives = 136/474 (28%), Gaps = 105/474 (22%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            GAG+GG+     L   G   I+LE+    GGR       GF    G   +        L 
Sbjct: 7    GAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLA 66

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             L +  +   V ++   P  ++ W  + F           +     ++ +       L  
Sbjct: 67   HLLR-ILGAKVEIVNSNPKGKILWEGKIF--------HYRESWKFLSVKEKAKALKLLAE 117

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
             +       L                         W     I  +  +N++L       +
Sbjct: 118  IRM----NKLPKEEIPA----------------DEW-----IKEKIGENEFLLSVLESFA 152

Query: 898  LFIGGNP---FSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
             +         +   +   I A     G    +GG  A+I  L ++     G ++   +V
Sbjct: 153  GWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEV 212

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
            + I +      KV+ ++ + +  D+ +SN  +  T + L+G+  F  + Y+  +     +
Sbjct: 213  VEINIEE---KKVYTRDNEEYSFDVAISNVGVRETVK-LIGRDYF-DRDYLKQVDSIEPS 267

Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
                    +      + +  +F P                   +    + PS  D SLA 
Sbjct: 268  EGIKFNLAVPG-EPRIGNTIVFTP-----------------GLMINGFNEPSALDKSLAR 309

Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
             G +   A + + N      N  +              +     L +            +
Sbjct: 310  EGYTLIMAHMALKNG-----NVKKA------------IEKGWEELLEIFPEGEPLLAQVY 352

Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKN-------LTNLYFVGAGTHPGA 1181
            +D                       P NR +        L  +  VG G  P  
Sbjct: 353  RD-------------------GN--PVNRTRAGLHIEWPLNEVLVVGDGYRPPG 385

>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Length = 293

 Score =  219 bits (559), Expect = 4e-64
 Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)

Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
            KI+K  SKSFS A  L     R  V  +YA CR  DD ID          +K+       
Sbjct: 19   KIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKE------D 72

Query: 1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
            ++ +  K       F+      +ALQ +    +      +  +D    D     + T  E
Sbjct: 73   IQSIE-KYPYEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAE 131

Query: 1304 TLGYCYHVAGTIGLIIAHLIGV-KEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLP 1362
              GYCY VAGT+G ++  ++   +   T + AR LG + QL NI RDV +DF   R Y  
Sbjct: 132  LFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFENERIYFS 191

Query: 1363 LDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422
               L+   ++ +             +      +AE  +   + ++    + +   I  + 
Sbjct: 192  KQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIELAA 251

Query: 1423 SIYREI 1428
             IY EI
Sbjct: 252  RIYIEI 257

>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3asx_A* 3lee_A* 3q2z_A* 3q30_A* 1ezf_A* Length = 343

 Score =  160 bits (406), Expect = 3e-43
 Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 15/248 (6%)

Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSK------FLKKN 1237
            K +   S+SF++ I+  D  +R  V + Y   R  D + D+       K      F    
Sbjct: 18   KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFL 77

Query: 1238 VSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERT 1297
                 +    + K ++    F      F  L +     +    +      G   + +++ 
Sbjct: 78   YQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE--KYQTVIADICRRMGIGM-AEFLDKH 134

Query: 1298 YITLDETLGYCYHVAGTIGLIIAHLIGVKE------KDTLNCARNLGIAFQLTNISRDVI 1351
              +  E   YC++VAG +G+ ++ L    E       +    A ++G+  Q TNI RD +
Sbjct: 135  VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYL 194

Query: 1352 DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411
            +D   GR + P +          +F   EN     + +  ++  A  +    +  L+ L 
Sbjct: 195  EDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLR 254

Query: 1412 LRSTLAIV 1419
             +S     
Sbjct: 255  NQSVFNFC 262

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 36/281 (12%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
           G G  G+     L  AG  T++LE RD+ GGR++    DG+ ++ G T +     +  + 
Sbjct: 46  GGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWRE 105

Query: 776 L--FDLSKNRMENYVNLLPIKPFY-RLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYR 832
           +  + +      ++     +  F  R       ++ +E   + L   + KF         
Sbjct: 106 ITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFT-------N 158

Query: 833 LFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQA 892
           +     + V    +  F    F   ++M +   ++ +I+   S+             + +
Sbjct: 159 VDGTNGRTVLPFPHDMFYVPEFRKYDEMSY-SERIDQIRDELSLNE-----------RSS 206

Query: 893 FSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWF----------PKGGVGALIKALIK-LF 941
                L   G     SS    +H        +            K G  A  +   +   
Sbjct: 207 LEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAA 266

Query: 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
                  +    V S+    +   +V  ++G+ F A  +V 
Sbjct: 267 GTGRLGYVFGCPVRSVVNERDAA-RVTARDGREFVAKRVVC 306

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 84.5 bits (209), Expect = 8e-17
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 41/279 (14%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKLL 776
           G GI G+A A  L  +G++ ++LE RD+ GGR Y +  Q     D G + +    +   +
Sbjct: 11  GGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN--RI 68

Query: 777 FDLSKNRMENYVNLLPIKPFYRLYWG-KEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
             L+K   E  +    +    RL    K K   +      +   I   + N+   +R   
Sbjct: 69  LRLAK---ELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNF--WRTMD 123

Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS- 894
           +  +++  +                              ++  ++ +    +  KQ  + 
Sbjct: 124 DMGREIPSDAPWKAPLAEEW----------------DNMTMKELLDKLCWTESAKQLATL 167

Query: 895 FNSLFIGGNPFSTSSIYTL-----------IHALEYEWGIWFPKGGVGALIKALIKLFQN 943
           F +L +       S+++ L           I +           GG G + +    +   
Sbjct: 168 FVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSER---IMDL 224

Query: 944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
           LG  + L   VI I      V  V   N ++++A  ++S
Sbjct: 225 LGDRVKLERPVIYIDQTRENV-LVETLNHEMYEAKYVIS 262

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 81.5 bits (201), Expect = 5e-16
 Identities = 49/335 (14%), Positives = 99/335 (29%), Gaps = 42/335 (12%)

Query: 718  GAGIGGIALAIRLQTAGISTI-ILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIK 774
            GAG  G+A  + L+ AG     ILE+ D  GG+ +     G  ++ G  +   +     +
Sbjct: 13   GAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQE 72

Query: 775  LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
            ++           +    +     +Y  ++  +     +  ++K      L   K     
Sbjct: 73   IMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQK---LGQLLATKYQGYD 129

Query: 835  LN-YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
             N +  KV ++  L F    FL +N         I        Y          Y+ +  
Sbjct: 130  ANGHYNKVHEDLMLPFD--EFLALNGCEAARDLWINP-FTAFGYGHFDNVPA-AYVLKYL 185

Query: 894  SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQ 953
             F ++                        +W    G  A+ + L      L      N  
Sbjct: 186  DFVTMMSFAKGD-----------------LWTWADGTQAMFEHLNA---TLEHPAERNVD 225

Query: 954  VISIYVNNNKVNKVHLKNGQIFDADIIV--------SNADIINTYRNLLGQYAFGKKKYM 1005
            +  I   + KV  +H  +       +++          +D  +  R    +     ++YM
Sbjct: 226  ITRITREDGKV-HIHTTDWDRESDVLVLTVPLEKFLDYSDADDDEREYFSK--IIHQQYM 282

Query: 1006 NLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSN 1040
                          Y   + +   L H  +++   
Sbjct: 283  VDACLVKEYPTISGYVPDNMRPERLGHVMVYYHRW 317

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 79.5 bits (195), Expect = 2e-15
 Identities = 38/300 (12%), Positives = 90/300 (30%), Gaps = 51/300 (17%)

Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA---------------------YVY 753
           I  G G+    L+  +   G   + +++    GG +                      + 
Sbjct: 10  IVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMG 69

Query: 754 KQDGFIFDAGPTVI-TDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDN 812
           +   +  D  P  +  +   +K+L       +  Y++   ++  +    GK   +   + 
Sbjct: 70  RGRDWNVDLIPKFLMANGQLVKMLLYT---EVTRYLDFKVVEGSFVYKGGKIYKVPSTET 126

Query: 813 IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGY--LSFASKSFLTINDMLFILPKLIKI 870
                  +  F     + + +F+    +   + +  +   + S   +     +   +I  
Sbjct: 127 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVI-- 184

Query: 871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEW-----GIWF 925
                           D+   A +        +     +I  +    E           +
Sbjct: 185 ----------------DFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLY 228

Query: 926 PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985
           P  G+G L +   +L    GG  +LN  V  I + N KV  V    G++     ++ +  
Sbjct: 229 PLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLICDPS 287

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 79.4 bits (196), Expect = 3e-15
 Identities = 48/270 (17%), Positives = 90/270 (33%), Gaps = 24/270 (8%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
           GAG  G+A A  L+ AG+S  ++E RD+ GGR +    DG + + G   +       I L
Sbjct: 12  GAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISL 71

Query: 776 L--FDLSKNRMENYVNLLPIKP-FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYR 832
           L    L           + I     R  +  + F   E   K++++ I + +    +   
Sbjct: 72  LDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGA 131

Query: 833 LFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQA 892
                         +SF                 LI           +  FI    L + 
Sbjct: 132 EEPWAHPLARDLDTVSFKQ--------------WLINQSDDAEARDNIGLFIAGGMLTKP 177

Query: 893 FSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNS 952
               S        +++  ++ +   E         GG+  +      + + LG ++ LN+
Sbjct: 178 AHSFSALQAVLMAASAGSFSHL-VDEDFILDKRVIGGMQQVSIR---MAEALGDDVFLNA 233

Query: 953 QVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
            V ++  N +    V        +A  ++ 
Sbjct: 234 PVRTVKWNESGA-TVLADGDIRVEASRVIL 262

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 44/282 (15%)

Query: 718 GAGIGGIALAIRLQTAGIST-IILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIK 774
           GAG+ GI+ A RL  AGI+  +ILE  D  GGR +     G   + G   +   +   + 
Sbjct: 11  GAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMN 70

Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
            ++ +         + L ++ F   +    + +  ED     E  + K          + 
Sbjct: 71  PIWPIVN-------STLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMG 123

Query: 835 LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
              S  +   G    +  +   +N+     P                     D +   + 
Sbjct: 124 EKLSATLHASGRDDMSILAMQRLNEHQPNGPA-----------------TPVDMVVDYYK 166

Query: 895 FNSLFIGGNPFSTSSIYTLIHALEYEWG------IWFPKGG-------VGALIKALIKLF 941
           F+  F    P   +S+   +    +         +   +G         G  +K   K  
Sbjct: 167 FDYEF--AEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSG 224

Query: 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDAD-IIVS 982
           + +   L LN  V  I  +   V  V  ++  ++ AD ++VS
Sbjct: 225 KIVDPRLQLNKVVREIKYSPGGV-TVKTEDNSVYSADYVMVS 265

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 41/277 (14%), Positives = 80/277 (28%), Gaps = 43/277 (15%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ---DGFIFDAGPTVITDPNSIK 774
           G G  G+  A  L  AG   ++LE  ++ GGRAY  +     G   + G   +   +  +
Sbjct: 8   GGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPR 67

Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
           L  +L +  +           F            +     +     A         +R+ 
Sbjct: 68  LAAELDRYGIPTA-AASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRID 126

Query: 835 LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
           L    +      L      ++   D+                             +Q   
Sbjct: 127 LEKGLENQDLEDLDIPLNEYVDKLDL-------------------------PPVSRQFLL 161

Query: 895 FNSLFIGGNPFSTSSIYTLIHAL---------EYEWGIWFPKGGVGALIKALIKLFQNLG 945
             +  + G P   +S   ++  +                    G   L+ A   + Q + 
Sbjct: 162 AWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDA---MSQEI- 217

Query: 946 GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
             + L + V  I  + + V  V +K+G  F A  ++ 
Sbjct: 218 PEIRLQTVVTGIDQSGDVV-NVTVKDGHAFQAHSVIV 253

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 76.1 bits (187), Expect = 3e-14
 Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 26/282 (9%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           G G  G+  A  LQ AG    +LE R +PGGR +  +      D          S    +
Sbjct: 18  GGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFY 77

Query: 778 DL------SKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGY 831
           ++        +   +Y   L ++           F+NY+ +   L  Q   +       +
Sbjct: 78  NVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSD-TSLSGQSVTYRAAKADTF 136

Query: 832 RLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQ 891
                  KK   +G L       L+  D   +   L            +    +  Y  +
Sbjct: 137 GYMSELLKKATDQGALD----QVLSREDKDALSEFLSDFGDLSDDGRYLG-SSRRGYDSE 191

Query: 892 AFSFNSLFIGGNPFSTSSIY--TLIHALEYEWGI------WFPKGGVGALIKALIKLFQN 943
             +  +      PF+   +    +     +++G       + P GG+  +  A       
Sbjct: 192 PGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGT 251

Query: 944 LGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADIIVS 982
              N++  ++V S+   +  V  V    G   +   AD  + 
Sbjct: 252 --DNIVFGAEVTSMKNVSEGV-TVEYTAGGSKKSITADYAIC 290

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 75.7 bits (185), Expect = 4e-14
 Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 53/306 (17%)

Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD----- 769
           I  G G+    L+  L   G   ++L++    GG               P          
Sbjct: 24  IILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGE 83

Query: 770 ---------PNSI----KLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDL 816
                    P  I     L+  L K R+ NY+  L ++  Y     K+ FL  E  I  +
Sbjct: 84  NRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKV 143

Query: 817 ---EKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFL-----TINDML--FILPK 866
              + +     L  +       N+ + V +       +   L     T+ ++   F L +
Sbjct: 144 PATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQ 203

Query: 867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFI------GGNPFSTSSIYTLIHALEYE 920
           L       +V   ++                L++      G +PF               
Sbjct: 204 LTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPF--------------- 248

Query: 921 WGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADI 979
               +P  G+G + +   ++    GG  +LN  V+    + +NKV  +   +G+I   D 
Sbjct: 249 ---IYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDK 305

Query: 980 IVSNAD 985
           ++ +  
Sbjct: 306 VICDPS 311

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 30/274 (10%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--GFIFDAGPTVITDPNSIKL 775
           GAG+ G++ A  L  AG    +LE  ++PGGR   Y+ +  G+  + GP  + + +    
Sbjct: 40  GAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKH---- 95

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
                   +  Y+    ++         +    +  NI+    ++ K     +  Y +  
Sbjct: 96  ------RIVREYIRKFDLR-LNEFSQENDNAWYFIKNIRKKVGEVKK--DPGLLKYPVKP 146

Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS- 894
           + + K   + Y     K    + + L        +  + + YS     IK   L      
Sbjct: 147 SEAGKSAGQLYEESLGK----VVEELKRTNCSYILNKYDT-YSTKEYLIKEGDLSPGAVD 201

Query: 895 -FNSLFIGGNPFSTSSIYTLIHALEYEWGIWF--PKGGVGALIKALIKLFQNLGGNLILN 951
               L    + +  S I +L H   + +   F     G+  L  A   +++++   +  N
Sbjct: 202 MIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTA---MYRDIQDKVHFN 258

Query: 952 SQVISIYVNNNKV---NKVHLKNGQIFDADIIVS 982
           +QVI I  N+ KV    +   K      AD ++ 
Sbjct: 259 AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIV 292

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 73.8 bits (180), Expect = 2e-13
 Identities = 73/417 (17%), Positives = 127/417 (30%), Gaps = 40/417 (9%)

Query: 718  GAGIGGIALAIRL-QTAGISTIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
            GAG  G+  A RL Q  G S +I++  + PGG A      +GF++D G  VI      K 
Sbjct: 17   GAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHY--KY 74

Query: 776  LFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRL- 833
              D     +    +    +    +   G+     +++NI  L K+     ++ +    L 
Sbjct: 75   FDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALE 134

Query: 834  --FLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI---KAWKSVYSIVSQFIKNDY 888
                N   K F E  +             LF+ P   K+      K   + + + +    
Sbjct: 135  ARVANTKPKTFDEWIVRMMGTGIA----DLFMRPYNFKVWAVPTTKMQCAWLGERVAAPN 190

Query: 889  LKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFP-KGGVGALIKALIKLFQNLGGN 947
            LK   +   L      +  ++ +             FP +GG G +  A+          
Sbjct: 191  LKAVTTNVILGKTAGNWGPNATF------------RFPARGGTGGIWIAVANTLPKEKTR 238

Query: 948  LILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNL 1007
                 +V  +   N     V L++G       +VS   +           A   ++ + L
Sbjct: 239  FGEKGKVTKV---NANNKTVTLQDGTTIGYKKLVSTMAVDFLAE------AMNDQELVGL 289

Query: 1008 IKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067
             K+   +S  VI  G+                 Y       F +     N S Y    + 
Sbjct: 290  TKQLFYSSTHVIGVGVRGSRP---ERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEAS 346

Query: 1068 TDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLI 1124
              L        +             SI        +K +    +   CI  L    +
Sbjct: 347  AALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEM 403

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 73.3 bits (179), Expect = 3e-13
 Identities = 51/266 (19%), Positives = 100/266 (37%), Gaps = 32/266 (12%)

Query: 718 GAGIGGIALAIRLQTAGIST-IILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
           GAGI G+  A  L   GI   ++LE RD+ GGR   V    G  +D G +   D  +   
Sbjct: 15  GAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NP 73

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
           LF                     L  G+ +F+  +DN   ++++  + + +      +  
Sbjct: 74  LFLEEAQ--------------LSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVD 119

Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF 895
           N   K  +  +      S  +   ++         K        ++      YL Q   +
Sbjct: 120 NEMSKFAELEFHQHLGVSDCSFFQLVM--------KYLLQRRQFLTNDQI-RYLPQLCRY 170

Query: 896 NSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVI 955
             L+ G +    S+  T      ++    F      ++++ + + F      L L+ +V 
Sbjct: 171 LELWHGLDWKLLSAKDTY---FGHQGRNAFALNY-DSVVQRIAQSF--PQNWLKLSCEVK 224

Query: 956 SIYVNNNKVNKVHLKNGQIFDADIIV 981
           SI    +K   V+ ++G +++AD ++
Sbjct: 225 SITREPSKNVTVNCEDGTVYNADYVI 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 4e-12
 Identities = 93/635 (14%), Positives = 173/635 (27%), Gaps = 212/635 (33%)

Query: 804  EKFLNYEDNIKDLEKQIAK-FNLNDIKGYRLFLNYSKKVFKEGYLS--FASKSFLTINDM 860
            E    Y+D +   E      F+  D+       +  K +  +  +     SK  ++    
Sbjct: 13   EHQYQYKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 861  LFILPKLIKIKAWKSVYSIVSQFIKNDY--LKQAFSFNSLFIGGNPFSTSSIYTLIHALE 918
            LF     +  K  + V   V + ++ +Y  L              P   + +Y       
Sbjct: 67   LFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----QPSMMTRMYIEQRDRL 119

Query: 919  YEWGIWFPKGGV--GALIKALIKLFQNL--GGNLILNS------QVISIYVNNNKVNKVH 968
            Y     F K  V        L +    L    N++++         +++ V  +   KV 
Sbjct: 120  YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQ 177

Query: 969  LK-NGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027
             K + +IF              + N               + + +      + + +   +
Sbjct: 178  CKMDFKIF--------------WLN------LKNCNSPETVLEMLQK----LLYQIDPNW 213

Query: 1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVP 1087
            T  + H     SN K  I +I      +  L   L S    +  L          L+   
Sbjct: 214  TSRSDH----SSNIKLRIHSI------QAELRRLLKSKPYEN-CL----------LV--- 249

Query: 1088 NLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR-KKLITQR------------------- 1127
             L N     + ++       F         NL  K L+T R                   
Sbjct: 250  -LLNV---QNAKAWN----AF---------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 1128 ----IFTPNDFKDVLGSYLG--------SAFSFAPLLTQ--SAWFRPH-NRDKNLTNLYF 1172
                  TP++ K +L  YL            +  P      +   R       N  ++  
Sbjct: 293  HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 1173 VGAGTHPGAANKIIKAGSKSFSSAI--KLF--------DPVIRYKVLMLYAWC---RYCD 1219
                        II++       A   K+F           I   +L L  W    +   
Sbjct: 353  -------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDV 404

Query: 1220 DVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLAL-QKIISIHSFP 1278
             V+ N+     S   K+       +  + ++        K+K     AL + I+  ++ P
Sbjct: 405  MVVVNK-LHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIP 456

Query: 1279 V-----HLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNC 1333
                   L+  +LD          Y        Y +     IG    HL  ++  + +  
Sbjct: 457  KTFDSDDLIPPYLDQ---------YF-------YSH-----IGH---HLKNIEHPERMTL 492

Query: 1334 ARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRN 1368
             R +                      +L   +L  
Sbjct: 493  FRMV----------------------FLDFRFLEQ 505

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-09
 Identities = 106/666 (15%), Positives = 192/666 (28%), Gaps = 201/666 (30%)

Query: 684  HLDI----MQYFYT--LP---DKIIRNFYANKLSFFDKIR-IFSGAGIGGI-ALAIRLQT 732
            H+D      QY Y   L    D  + NF    +   D  + I S   I  I      +  
Sbjct: 6    HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSG 63

Query: 733  AGISTIILEQRDKPGGRAYV---YKQD-GFIFDAGPTVITDPNSIKLLFDLSKNRMENYV 788
                   L  + +   + +V    + +  F+     T    P+ +  ++   ++R+ N  
Sbjct: 64   TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 789  NLLPIKPFYRLYWGKEKFLNYEDNIKDLE--------------KQI-AKFNLNDIKGYRL 833
             +       R     + +L     + +L               K   A         Y++
Sbjct: 124  QVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS---YKV 176

Query: 834  FLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
                  K+F   +L+  + +  +   +L +L KL+             Q   N       
Sbjct: 177  QCKMDFKIF---WLNLKNCN--SPETVLEMLQKLL------------YQIDPN------- 212

Query: 894  SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALI--KLFQN-LGGNLIL 950
             + S         +S+I   IH+++ E             ++ L+  K ++N L   L+L
Sbjct: 213  -WTSR-----SDHSSNIKLRIHSIQAE-------------LRRLLKSKPYENCL---LVL 250

Query: 951  NSQVISIYVNNNKVNKVHLKNGQIFDAD--IIV--SNADIINTYRNLLGQYAFGKKKYMN 1006
             +      V N K           F+    I++      + +        +       M 
Sbjct: 251  LN------VQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 1007 LIKKKMSNSLFVIYFGLSEQ-------YTHLAHHTIF------FPS---NYK----KSIE 1046
            L   +   SL + Y     Q        T+    +I         +   N+K      + 
Sbjct: 298  LTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 1047 NIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSE------ES 1100
             I     S + L    +      LS+ P       A IP   L   S+ W +        
Sbjct: 357  TIIES--SLNVLEPAEYRKMFDRLSVFPPS-----AHIPTILL---SLIWFDVIKSDVMV 406

Query: 1101 I--KLKN--------------IVFMYLEQYC----IPNLRKKLITQ----RIFTPNDF-K 1135
            +  KL                I  +YLE          L + ++      + F  +D   
Sbjct: 407  VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 1136 DVLGSY----LGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGS- 1190
              L  Y    +G          +   FR         +  F+          KI    + 
Sbjct: 467  PYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVFLDFRFLEQ--------KIRHDSTA 513

Query: 1191 -KSFSSAIKLFDPVIRYKVLMLYAWCRY-CD-DVIDNQICGNRSKFLKKN----VSMKHK 1243
              +  S +     +  YK         Y CD D    ++      FL K     +  K+ 
Sbjct: 514  WNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEENLICSKY- 564

Query: 1244 LKILRI 1249
              +LRI
Sbjct: 565  TDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 4e-09
 Identities = 81/553 (14%), Positives = 169/553 (30%), Gaps = 154/553 (27%)

Query: 4   EKNYYWDFILIGAGLWNSI----------IAWYLKQYN---------PKLNVLLLELSSS 44
             NY +        L + I             Y++Q +          K NV  L+    
Sbjct: 88  RINYKF--------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 45  VKNHIWSFHQTVLSSSQYMLI-------KPLITYSW------PSYQVKFPKFNRKIF--- 88
           ++  +       L  ++ +LI       K     +W       SY+V+  K + KIF   
Sbjct: 140 LRQALLE-----LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQ-CKMDFKIFWLN 188

Query: 89  SGYYSI---CSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLT 145
               +      + L   L+  +   W   S H  +I +     ++    E   +      
Sbjct: 189 LKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPY 243

Query: 146 PNSLMI-EDTRYTK--KPF-LKIDML----KKSIKDYAIKNRWKLKNIEREEIGSIPIAL 197
            N L++  + +  K    F L   +L     K + D+         +++   +       
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LT 299

Query: 198 KNEKIIKFKKTICVGLRANLL--HATTGYSLPIAIQLAENIAKYSITTN---QINSTVLF 252
            +E      K   +  R   L     T     ++I +AE+I     T +    +N   L 
Sbjct: 300 PDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLT 356

Query: 253 KLVKKFIINHQK----KQRFFCM-------------LNRLFFLSNSRCHLDIMQYF--YT 293
            +++   +N  +    ++ F  +             L+ ++F       + ++     Y+
Sbjct: 357 TIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 294 LPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTI---ILEQRDKLSWIN 350
           L   + +    + +S            I  I L ++++      +   I++  +    I 
Sbjct: 416 L---VEKQPKESTIS------------IPSIYLELKVKLENEYALHRSIVDHYN----IP 456

Query: 351 LKFQFGVGYPNTNQGLWNSIIAWYLKQYNP-----KLNVLLLELSSSVKNHIWSFHQNDI 405
             F      P      + S I  +LK            ++ L+           F +  I
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---------RFLEQKI 507

Query: 406 SSSQYMLIKPLITYSWPSYQVKFPKFNR-KIFSGYYSICSKH-LNSYLIRALGINNFLFN 463
                       + +W +         + K +  Y  IC        L+ A+   +FL  
Sbjct: 508 RHD---------STAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAIL--DFLPK 554

Query: 464 NKTVEIITP-TSI 475
            +   I +  T +
Sbjct: 555 IEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-07
 Identities = 82/657 (12%), Positives = 190/657 (28%), Gaps = 210/657 (31%)

Query: 125 MDATVNQKNDE---YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYA-IKNRW 180
           +D  +  K+         +TL      ++        + F++ ++L+    +Y  + +  
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMV--------QKFVE-EVLRI---NYKFLMSPI 98

Query: 181 KLKNIEREEIGSIPIALKN-----------------EKIIKFKKTICVGLRAN---LLHA 220
           K +  +   +  + I  ++                 +  +K ++ +   LR     L+  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDG 157

Query: 221 TTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSN 280
             G              K          T +   V     +++ + +      ++F+L+ 
Sbjct: 158 VLG------------SGK----------TWVALDVCL---SYKVQCKMD---FKIFWLNL 189

Query: 281 SRCH-----LDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGI 335
             C+     L+++Q      D      + ++      I++   +    +   ++ +    
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 336 STIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKN 395
             ++L   +                     + N   A     +N    +LL      V +
Sbjct: 246 CLLVL--LN---------------------VQN---AKAWNAFNLSCKILLTTRFKQVTD 279

Query: 396 HIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRAL 455
            + +     IS     L    +T +        P   + +   Y     + L       L
Sbjct: 280 FLSAATTTHIS-----LDHHSMTLT--------PDEVKSLLLKYLDCRPQDLPR---EVL 323

Query: 456 GINNFLFNNKTVEIITPTSIR-----------INNKKIINANCIIDG--RGLKNSQFDGI 502
             N        + II   SIR           +N  K+     II+     L+ +++  +
Sbjct: 324 TTNPRR-----LSII-AESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRKM 374

Query: 503 YQ---IF----------LGQQWNLSSPHGLDIPIIMDATVN------QKNDEYHFIYTLP 543
           +    +F          L   W        D+ ++++          Q  +    I ++ 
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 544 LTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWK--------------------LK 583
           L              K   +  + +  +  Y I   +                     LK
Sbjct: 433 L----------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 584 NIER-EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642
           NIE  E +    +   + + ++ +K        N     +G  L    QL +    Y I 
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWN----ASGSILNTLQQL-KFYKPY-IC 535

Query: 643 TNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKII 699
            N      L   +  F+   ++             L  S+ + D+++      D+ I
Sbjct: 536 DNDPKYERLVNAILDFLPKIEEN------------LICSK-YTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-06
 Identities = 101/578 (17%), Positives = 192/578 (33%), Gaps = 178/578 (30%)

Query: 331 QTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390
           Q + ++ + +EQRD+L              N NQ                K NV  L+  
Sbjct: 104 QPSMMTRMYIEQRDRLY-------------NDNQVF-------------AKYNVSRLQPY 137

Query: 391 SSVKNHIWSFHQNDISSSQYMLI-------KPLITYSW------PSYQVKFPKFNRKIFS 437
             ++  +       +  ++ +LI       K     +W       SY+V+  K + KIF 
Sbjct: 138 LKLRQALLE-----LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQ-CKMDFKIF- 185

Query: 438 GYYSICSKHLNSYLIRALGINNFLFN---NKTVEIITPTSIRINNKKIINA--------- 485
            + ++ + +    ++  L     L+    N T      ++I++    I            
Sbjct: 186 -WLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 486 --NCIIDGRGLKNSQ----FDGIYQIFLGQQWN-----LSSPHGLDIPII-MDATVNQKN 533
             NC++    ++N++    F+   +I L  ++      LS+     I +     T+    
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 534 DEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWK-LKNIEREEIGS 592
            +   +  L   P  L  E    T  P   + ++ +SI+D      W   K++  +++ +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVL--TTNPRR-LSIIAESIRDG--LATWDNWKHVNCDKLTT 357

Query: 593 I---------P-----------IALKNEKI-IKF-------KKTICVGLRANLLHATTGY 624
           I         P           +   +  I                V +  N LH    Y
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---Y 414

Query: 625 SLPIAIQLAENIAKYSITTNQINSTVLFKLVKKF-----IINHQKKQRFFCMLNRLFFLS 679
           SL     + +   + +I+   I   +  KL  ++     I++H    + F   + L    
Sbjct: 415 SL-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDL---- 464

Query: 680 NSRCHLDIMQYFYT----------LPDKI--IRNFYANKLSFFD-KIRIFSGAGIGGIAL 726
               +LD  QYFY+           P+++   R  + +   F + KIR          A 
Sbjct: 465 -IPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIR---HDSTAWNAS 517

Query: 727 AIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMEN 786
              L T       L+Q          YK   +I D       DP   +L+  +     + 
Sbjct: 518 GSILNT-------LQQLKF-------YKP--YICD------NDPKYERLVNAILDFLPKI 555

Query: 787 YVNLLPIKPFYRLYWGKEKFLNYEDN--IKDLEKQIAK 822
             NL+    +  L       L  ED    ++  KQ+ +
Sbjct: 556 EENLI-CSKYTDLL---RIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-04
 Identities = 55/360 (15%), Positives = 113/360 (31%), Gaps = 95/360 (26%)

Query: 1097 SEESIKLKNIVFMYLEQYCIPNLRKKLI---TQRIFTPNDFKDVLGS---YLGSAFSFAP 1150
             E   + K+I+ ++ + + + N   K +    + I +  +   ++ S     G+   F  
Sbjct: 12   GEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 1151 LLTQSAWFRPHNRDKNLTNLY--FVGAGTHPGAANKIIKAGSKSFSSAIK--LFDPVIRY 1206
            LL++               +   FV          ++++   K   S IK     P +  
Sbjct: 71   LLSKQ------------EEMVQKFVE---------EVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 1207 KVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFL 1266
            +   +Y   R       +++  +   F K NVS       LR              PA  
Sbjct: 110  R---MYIEQR-------DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-------RPA-- 150

Query: 1267 ALQKIISIH----------------SFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYH 1310
               K + I                 S+ V    +    F++      ++     L  C +
Sbjct: 151  ---KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----FKI-----FWL----NLKNC-N 193

Query: 1311 VAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVG----RCYLPLDWL 1366
               T+  ++  L+   + +  + + +        +  +  +           C L L  +
Sbjct: 194  SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 1367 RN-EGLNKSNF---VLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422
            +N +  N  N    +L   R   FK VT  L  A   + S      TL      +++  +
Sbjct: 254  QNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 67.2 bits (163), Expect = 2e-11
 Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 26/343 (7%)

Query: 718  GAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
            GAG  G+  A+RL   G  +  + E  D PGG +     ++GF +D G  VI      + 
Sbjct: 16   GAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHY--QY 73

Query: 776  LFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
              D+    ++       ++    ++  G+     +++NI  L +Q  K  L+++      
Sbjct: 74   FDDVMDWAVQ---GWNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHAR 130

Query: 835  -LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
                    F+E +     +    I    F+ P   K+  W     ++S     + +    
Sbjct: 131  TYTEPPNNFEESFTRQFGEGIADI----FMRPYNFKV--WAVPPCLMSTEWVEERVAPV- 183

Query: 894  SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQ 953
                +            +       +       +GG G + +A+ +   +         Q
Sbjct: 184  DLERIRRNIQENRDDLGWGPNATFRFP-----QRGGTGIIYQAIKEKLPSEKLTFNSGFQ 238

Query: 954  VISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMS 1013
             I+I  +      +   NG++   D ++S     N  R   G    G  ++  +  K + 
Sbjct: 239  AIAIDADA---KTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVY 295

Query: 1014 NSLFVIYFGL--SEQYTHLAHHTIFFPSNYKKSIENIFGKNFS 1054
            +S  VI  G+  +          ++FP +           N+S
Sbjct: 296  SSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYS 338

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 67.0 bits (163), Expect = 2e-11
 Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 19/341 (5%)

Query: 718  GAGIGGIALAIRLQTAGIST--IILEQRDKPGGRAY-VYKQDGFIFDAGPTVI-----TD 769
            G GI G+A +  L  A      +++E  ++ GG    V   +G IF+ GP  I       
Sbjct: 9    GGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALG 68

Query: 770  PNSIKLLFDLS-KNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDI 828
              ++ L+ +L   + +       P      LY G          ++ L +    F+    
Sbjct: 69   ARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGG-ALHALPTGLRGLLRPSPPFSKPLF 127

Query: 829  -KGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKS-VYSIVSQF--I 884
              G R       K   E   SFA +        L +      + A  S   SI S F  +
Sbjct: 128  WAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSL 187

Query: 885  KNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL 944
                         L +G           +  AL   W  W  +GG+  L +AL     + 
Sbjct: 188  FQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

Query: 945  GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKY 1004
            G +++    V  + +      KV L++  +    +I +     +    LL   A      
Sbjct: 248  GVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA--SVLSELLPAEA---APL 302

Query: 1005 MNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSI 1045
               +    + S+ V+       +  +       PS+    +
Sbjct: 303  ARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGV 343

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 64.2 bits (156), Expect = 2e-10
 Identities = 45/287 (15%), Positives = 87/287 (30%), Gaps = 81/287 (28%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
           G GI G+A+A  L++ G   ++LE   + GG    +   G++ + GP      +P +  L
Sbjct: 23  GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRAL 82

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
              L                                   +LE +I      D    R ++
Sbjct: 83  AAAL-----------------------------------NLEGRIRA---ADPAAKRRYV 104

Query: 836 NYSKKVFK--EGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
               ++        +F +   L +   L +  +L   +A + V   ++ F +     +A 
Sbjct: 105 YTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRAT 164

Query: 894 S-----FNSLFIGGNPFSTSSIYTL--IHALEYEWG------------------------ 922
                   +    G+    S   T   +  +E E                          
Sbjct: 165 QVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAP 224

Query: 923 -----IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKV 964
                +    GG+  LI AL     +LG    + ++V  +   +   
Sbjct: 225 KLSGALSTFDGGLQVLIDALA---ASLGDAAHVGARVEGLAREDGGW 268

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 62.8 bits (152), Expect = 4e-10
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
           GAG+ G+A A +L+  G++  + E   K GG+     QDG I+D G   +  ++ +   L
Sbjct: 20  GAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFL 79

Query: 776 LFDL 779
           +  L
Sbjct: 80  IDSL 83

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 62.7 bits (152), Expect = 5e-10
 Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 77/309 (24%)

Query: 718 GAGIGGIALAIRLQTA------GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TD 769
           G GI G+A A  ++         +   ++E   + GG+    K+DG+I + GP       
Sbjct: 12  GGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERK 71

Query: 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIK 829
            ++ +L+ DL    +E+ +        Y L             +  + K         I 
Sbjct: 72  KSAPQLVKDL---GLEHLLVNNATGQSYVLVNRT---------LHPMPKGAVMGIPTKIA 119

Query: 830 GYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKN--- 886
                          G  S + K               I   +       + +F +    
Sbjct: 120 P----------FVSTGLFSLSGK--------ARAAMDFILPASKTKDDQSLGEFFRRRVG 161

Query: 887 ----DYLKQAFSFNSLFIGGNPFSTSSIYTL--IHALEYEWG------------------ 922
               + L +    + ++  G+    S + T    +  E +                    
Sbjct: 162 DEVVENLIEPL-LSGIY-AGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQL 219

Query: 923 -------IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIF 975
                        G+  L++ + K  Q     +   ++V  +  + +    + L NG   
Sbjct: 220 TAKKQGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSC-YSLELDNGVTL 276

Query: 976 DADIIVSNA 984
           DAD ++  A
Sbjct: 277 DADSVIVTA 285

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 61.5 bits (148), Expect = 2e-09
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           G+G+ G+A A +LQ+ G+   +LE RD+ GGR   +++  ++ D G  V+T       + 
Sbjct: 285 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMA 343

Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIK 814
            +SK   +  + L  IK    LY    + +  E +  
Sbjct: 344 VVSK---QVNMELAKIKQKCPLYEANGQAVPKEKDEM 377

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 60.0 bits (144), Expect = 2e-09
 Identities = 42/321 (13%), Positives = 99/321 (30%), Gaps = 59/321 (18%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQR-DKPGGRAYVYK----------QDGFIFDAGPTV 766
           GAGI G+     L  AG    ILE   ++ GGR   +                 +AG   
Sbjct: 51  GAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMR 110

Query: 767 ITDPNSIKL-LFDLSKNRMENYVNL-----------LPIKPFYRLYWGKEKFLNYEDNIK 814
           +   + + L L D    +   + N+                FY+ +   + + N   + +
Sbjct: 111 LPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPE 170

Query: 815 DLEKQIAKFNLNDIKGYRLFLNYSKK---VFKEGYLSFASKSFLTINDML---------- 861
             E              ++             EG+     ++ LT++DM+          
Sbjct: 171 FKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDMVNQALEPVRDY 230

Query: 862 ------FILPKLIKIKAWKSVYSIVSQFIKN----DYLKQAFSFNS--------LFIGGN 903
                          K W + ++ V +         +L++   F+         +    +
Sbjct: 231 YSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVEAIGTIENMTS 290

Query: 904 PFSTSSIYTLIHALEYEWGIWF--PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN 961
               +  ++ +   + +    +   +GG   L + L K   +L   +++  +++ +   +
Sbjct: 291 RLHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAK---DLRDQIVMGQRMVRLEYYD 347

Query: 962 NKVNKVHLKNGQIFDADIIVS 982
              +  H +        + + 
Sbjct: 348 PGRDGHHGELTGPGGPAVAIQ 368

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 58.0 bits (139), Expect = 2e-08
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           G+G+ G+A A +LQ+ G+   +LE RD+ GGR   +++  ++ D G  V+T       + 
Sbjct: 114 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMA 172

Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIK 814
            +SK   +  + L  IK    LY    + +  E +  
Sbjct: 173 VVSK---QVNMELAKIKQKCPLYEANGQAVPKEKDEM 206

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 56.2 bits (135), Expect = 6e-08
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 718 GAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAYVYKQDGFIFDAGP--TVITDPNSI 773
           G GI G+A A   + A   ++  +LE  ++ GG+   Y++DGF  + GP   V       
Sbjct: 11  GGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILT 70

Query: 774 KLLFDL 779
            L+  +
Sbjct: 71  DLIEAI 76

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 45/317 (14%), Positives = 92/317 (29%), Gaps = 58/317 (18%)

Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA------------------------ 750
           I  G GI    L+  L   G   + ++++D  GG A                        
Sbjct: 15  IVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERES 74

Query: 751 YVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYE 810
              K   +  D  P  +      +L   L    +  YV+   +   Y   + + K     
Sbjct: 75  KFGKDRDWNVDLIPKFLMANG--ELTNILIHTDVTRYVDFKQVSGSYV--FKQGKIYKVP 130

Query: 811 DNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI 870
            N    E +     L  I   R    + + +        ++   L ++            
Sbjct: 131 AN----EIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTM-------- 178

Query: 871 KAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTLIHALEY--------EW 921
                   +  +F   +  K+      +L+   +     +  +    L Y        + 
Sbjct: 179 ------DEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS 232

Query: 922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYV--NNNKVNKVHLKNGQIFDADI 979
              +P  G+G L +   +L    GG  +L++ +  +    +  K   V       F A +
Sbjct: 233 PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPL 291

Query: 980 IVSNADIINTYRNLLGQ 996
           ++++           GQ
Sbjct: 292 VIADPTYFPEKCKSTGQ 308

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 2  NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLE---LSSSVKNHIWS 51
            E+ +  D ++IGAG   +  A+YL+Q  P  ++LL+E   L +     I +
Sbjct: 32 FTEEAF--DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILA 82

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 36/114 (31%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RAYVYKQDGFIFDAGPTVITDPNSIKL 775
           G G  G++    L+ +G+S +IL+    PGG  + + +                  S+ L
Sbjct: 10  GGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWH-----------------SLHL 51

Query: 776 LFDLSKNRMENYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLN 826
                          +P  P       Y  + + L Y      L +   K+ L 
Sbjct: 52  --FSPAGWSS-----IPGWPMPASQGPYPARAEVLAY------LAQYEQKYALP 92

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKL 775
           GAG  GI +AI L+  GI+ +I+ ++   G     +          P       P+    
Sbjct: 11  GAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW----------PKSTRTITPSFTSN 60

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLN 826
            F +  +     ++  P   F   +   E +  Y      L+     + LN
Sbjct: 61  GFGM-PDMNAISMDTSPAFTFNEEHISGETYAEY------LQVVANHYELN 104

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
           G G  G+  AI L+  G    + E+  +L 
Sbjct: 18  GGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPG 747
           G G  G+  AI L+  G    + E+  +  
Sbjct: 18  GGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750
            + I  G G  G+ +A  LQ  GI   + E+ +    R 
Sbjct: 28  NVAI-IGGGPVGLTMAKLLQQNGIDVSVYERDNDREARI 65

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 43.7 bits (104), Expect = 4e-04
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
           GAG  G+    RL+  G S  ++E     GG
Sbjct: 23  GAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
           GAGIGG++ A+ L+ +GI   + E   ++ 
Sbjct: 30  GAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 43.3 bits (103), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
           GAG+ GI  A  +  AG+  + +E  +  GG
Sbjct: 16  GAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 43.0 bits (102), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
           GAGI G+    R ++ G++    E     GG
Sbjct: 28  GAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 42.7 bits (100), Expect = 7e-04
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIF-DAGPTVITDPNSIKLL 776
           G+G+ G   A  L+      +++E+R+  GG AY    +G      G            +
Sbjct: 8   GSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAH----------I 57

Query: 777 FDLSKNRMENYVN-LLPIKPFYRLYWG--KEKFLNYEDNIKDLEKQIAKFNLNDIKGYRL 833
           F  +   + +YVN L+    F        K+K  N   N+    +    + + D +  + 
Sbjct: 58  FHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQM---WGVKDPQEAQN 114

Query: 834 FLNYSKKVFKE 844
            +N  KK + +
Sbjct: 115 IINAQKKKYGD 125

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 42.3 bits (100), Expect = 9e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           G  I G+  A+ L+ AG+   + E+  +P          G     G  ++  P  +  L 
Sbjct: 12  GGSISGLTAALMLRDAGVDVDVYERSPQPLSGF------G----TG--IVVQPELVHYLL 59

Query: 778 DL 779
           + 
Sbjct: 60  EQ 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1428
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
4hd1_A	294	Squalene synthase HPNC; MCSG, structural genomics,	100.0
3acx_A	293	Dehydrosqualene synthase; CRTM, carotenoid biosynt	100.0
3vj8_A	343	Squalene synthase; farnesyl-diphosphate farnesyltr	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.96
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.96
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.96
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.95
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.95
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.95
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.95
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.94
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.94
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.94
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.92
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.92
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.92
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.9
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.9
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.89
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.89
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.87
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.87
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.87
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.86
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.86
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.85
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.85
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.82
3atr_A	453	Conserved archaeal protein; saturating double bond	99.82
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.82
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.82
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.81
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.81
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.8
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.77
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.77
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.76
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.76
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.75
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.75
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.73
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.71
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.71
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.7
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.7
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.69
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.69
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.68
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.68
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.66
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.66
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.65
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.64
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.63
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.62
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.59
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.58
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.58
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.58
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.54
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.49
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.46
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.28
3atr_A	453	Conserved archaeal protein; saturating double bond	99.12
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.11
3dme_A	369	Conserved exported protein; structural genomics, P	99.07
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.05
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.99
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.98
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.95
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.92
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.92
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.92
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.91
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.88
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.85
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.84
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.83
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.83
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.82
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.79
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.79
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.78
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.77
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.76
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.76
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.75
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.72
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.71
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.7
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.69
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.67
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.67
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.66
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.64
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.62
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.59
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.58
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.57
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.56
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.56
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.51
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.5
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.49
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.49
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.48
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.48
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.48
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.48
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.47
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.47
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.46
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.45
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.44
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.44
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.42
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.42
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.41
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.41
4dna_A	463	Probable glutathione reductase; structural genomic	98.39
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.38
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.38
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.37
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.37
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.36
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.35
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.34
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.33
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.33
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.31
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.3
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.3
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.29
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.26
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.26
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.23
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.23
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.22
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.21
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.21
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.21
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.2
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.2
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.19
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.18
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.17
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.17
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.15
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.14
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.14
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.14
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.14
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.13
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.13
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.12
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.11
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.11
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.1
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.09
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.08
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.06
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.03
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.03
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.02
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.98
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.98
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.96
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.96
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.96
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.92
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.9
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.87
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.87
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.86
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.81
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.8
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.78
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.75
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.73
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.73
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.7
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.69
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.69
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.64
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.64
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.62
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.6
3dme_A	369	Conserved exported protein; structural genomics, P	97.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.58
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.56
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.54
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.51
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.5
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.48
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.45
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.44
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.43
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.42
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.41
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.41
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.4
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.39
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.38
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.38
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.36
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.34
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.31
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.3
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.3
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.29
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.29
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.28
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.28
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.27
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.27
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.24
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.22
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.21
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.21
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.21
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.19
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.19
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.17
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.17
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.17
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.17
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.16
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.15
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.15
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.13
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.11
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.1
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.09
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.07
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.06
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.02
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.02
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.01
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.01
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.01
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.93
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	96.89
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.89
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.88
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.86
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.85
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.85
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.85
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.81
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.81
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.8
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.79
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	96.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.76
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.75
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.74
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.7
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.68
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.67
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.66
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.66
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.66
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.65
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.59
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.59
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.58
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.55
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.54
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.53
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.52
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.5
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.5
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.48
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.48
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	96.48
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.48
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.47
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.46
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.46
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.46
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.42
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.41
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.39
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.39
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.39
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.38
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.37
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.37
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.36
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.34
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	96.32
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.3
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.27
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.27
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.26
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.25
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.25
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.23
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.22
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.21
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	96.21
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.2
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.18
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.17
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.17
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	96.17
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.16
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.12
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	96.06
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.98
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.98
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.96
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	95.96
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.95
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.94
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	95.91
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.86
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.82
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.82
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.81
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	95.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.77
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.73
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.72
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.69
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.67
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.67
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.63
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.59
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.59
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.53
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.52
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.52
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.51
4dna_A	463	Probable glutathione reductase; structural genomic	95.51
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.51
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.49
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.49
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.48
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.47
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.46
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.44
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.43
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.42
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.32
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.32
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	95.29
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.27
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.23
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	95.23
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.23
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.19
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	95.12
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.06
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	95.03
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.02
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.02
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.0
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.98
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.93
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.91
3r9u_A	315	Thioredoxin reductase; structural genomics, center	94.88
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.84
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.82
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	94.82
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.81
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	94.77
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.77
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	94.76
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	94.74
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	94.71
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.67
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	94.65
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	94.64
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.61
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.58
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.56
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.49
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	94.43
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	94.41
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.4
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.3
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.2
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	94.11
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	94.02
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	93.98
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.94
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	93.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	93.84
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.84
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	93.63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	93.52
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.51
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	92.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	92.9
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	92.77
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	92.52
3aqb_B	325	Component B of hexaprenyl diphosphate synthase; pr	92.4
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	92.02
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	91.99
4f62_A	317	Geranyltranstransferase; enzyme function initiativ	91.37
3mzv_A	341	Decaprenyl diphosphate synthase; transferase, stru	91.3
3ts7_A	324	Geranyltranstransferase; isoprenoid synthesis, far	91.13
3rmg_A	334	Octaprenyl-diphosphate synthase; structural genomi	91.06
1uby_A	367	FPS, farnesyl diphosphate synthase; transferase, i	90.94
2her_A	368	Fragment, farnesyl pyrophosphate synthase; farnesy	90.85
2ihi_A	395	Pyrophosphate synthase; PV092040, structural genom	90.73
1wmw_A	330	Geranylgeranyl diphosphate synthetase; GGPP, preny	90.72
3p8r_A	302	Geranyltranstransferase; isoprenyl synthase, struc	90.56
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.51
3oyr_A	345	Trans-isoprenyl diphosphate synthase; isoprenyl sy	90.51
2qis_A	374	Farnesyl pyrophosphate synthetase; trans-prenyltra	90.4
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.35
3lsn_A	304	Geranyltranstransferase; structural genomics, prot	90.28
2q80_A	301	Geranylgeranyl pyrophosphate synthetase; isoprenoi	90.24
1yhl_A	362	Farnesyl pyrophosphate synthase; farnesyl diphosph	90.15
3uca_A	324	Geranyltranstransferase; isoprenoid synthesis, iso	90.07
3tc1_A	315	Octaprenyl pyrophosphate synthase; all alpha-helic	90.0
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.93
3m0g_A	297	Farnesyl diphosphate synthase; structural genomics	89.91
3lom_A	313	Geranyltranstransferase; geranyltransferase, struc	89.82
3kb9_A	382	EPI-isozizaene synthase; terpenoid cyclase, alpha-	89.61
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.52
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.44
3lmd_A	360	Geranylgeranyl pyrophosphate synthase; isoprenyl d	89.39
3lk5_A	380	Geranylgeranyl pyrophosphate synthase; structural	89.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	89.31
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.27
4dhd_A	358	Polyprenyl synthetase; isoprenoid synthesis, isopr	89.14
3nf2_A	352	Putative polyprenyl synthetase; isoprenyl diphosph	89.06
3pko_A	334	Geranylgeranyl pyrophosphate synthase; isoprenyl d	88.61
1rtr_A	301	Geranyltranstransferase; 2.50A {Staphylococcus aur	88.53
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.41
1v4e_A	299	Octoprenyl-diphosphate synthase; trans-type prenyl	87.5
2e8v_A	340	Geranylgeranyl pyrophosphate synthetase; prenyltra	87.17
3apz_A	348	Geranyl diphosphate synthase; prenyltransferase, a	87.07
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.17
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.11
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	86.06
3p8l_A	302	Geranyltranstransferase; isoprenyl synthase, struc	85.32
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.27
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	85.23
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	84.9
3ipi_A	295	Geranyltranstransferase; isoprene biosynthesis, he	84.64
3c85_A	183	Putative glutathione-regulated potassium-efflux S	84.43
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	84.4
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	83.9
2h8o_A	335	Geranyltranstransferase; geranyltransferase,agroba	83.89
1wy0_A	342	Geranylgeranyl pyrophosphate synthetase; pyrococcu	83.68
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	83.03
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	82.86
1ps1_A	337	Pentalenene synthase; antibiotic biosynthesis, ses	82.6
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	82.54
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	82.52
2ftz_A	284	Geranyltranstransferase; TM0161, structural GE joi	82.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	82.33
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	82.27
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	81.92
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	81.71
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	81.65
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	81.26
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.95
3tl2_A	315	Malate dehydrogenase; center for structural genomi	80.8
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	80.75
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	80.63
3pde_A	309	Farnesyl-diphosphate synthase; isoprenyl diphospha	80.61
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	80.5
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	80.5
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	80.47

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1.3e-58  Score=580.22  Aligned_cols=488  Identities=54%  Similarity=0.981  Sum_probs=364.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCchHHHHHHHHhcccccccceE
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      |++|||||||++||+||++|+++|++|+||||++++||+++|++.+||.+|.|++++.++..+.++++.+|.++.+.+++
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~~~~~~~l~~~~g~~~~~~~~~   80 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSAIEELFALAGKQLKEYVEL   80 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSCTHHHHHHHHTTTCCGGGTCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecCchhHHHHHHHhcchhhhceee
Confidence            57899999999999999999999999999999999999999999999999999999998888899999999888888899


Q ss_pred             EecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhh
Q psy10545        791 LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI  870 (1428)
Q Consensus       791 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  870 (1428)
                      .+.++.+.+.+.+|+.+.++.+...+.+.+.+++|.+.+.+.+|++.++.++......+...++.++.+++...+.+..+
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (501)
T 4dgk_A           81 LPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKL  160 (501)
T ss_dssp             EEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTS
T ss_pred             EecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999888877666666666777777776655544444


Q ss_pred             cccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHcCcEEEe
Q psy10545        871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLIL  950 (1428)
Q Consensus       871 ~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~  950 (1428)
                      ....++.+++.+++.++.++.++.....+.+..|...++.+.++.+.....|.++|+||++.|+++|++.++++|++|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~  240 (501)
T 4dgk_A          161 QAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVL  240 (501)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHSCCCEEEETTHHHHHHHHHHHHHHHTTCEEEC
T ss_pred             hhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcchhhhhhhhhhhhhccCCeEEeCCCCcchHHHHHHHHHHhCCceee
Confidence            44567889999999999999999877777788888777777777777777899999999999999999999999999999


Q ss_pred             CceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCC
Q psy10545        951 NSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL 1030 (1428)
Q Consensus       951 ~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~ 1030 (1428)
                      |++|++|..+++++++|+++||+++.||.||++++++.+...|+++.+.+....+.+++.+++.+.++++++++.+.+.+
T Consensus       241 ~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l  320 (501)
T 4dgk_A          241 NARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQL  320 (501)
T ss_dssp             SCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---------------------------CCEEEEEEEEESSCCTTS
T ss_pred             ecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccccCCceeEEEecccCCcccc
Confidence            99999999999999999999999999999999999999999899887777777788889999999999999999998889


Q ss_pred             cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHH
Q psy10545       1031 AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMY 1110 (1428)
Q Consensus      1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~ 1110 (1428)
                      .++++++.+++...++.++..+.+++++.++++.+|..||+++|+|++++++++++|.......+|+..++++.+++++.
T Consensus       321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~vl~~  400 (501)
T 4dgk_A          321 AHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGPKLRDRIFAY  400 (501)
T ss_dssp             CSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHHHHHHHHHHHHHHH
Confidence            99999999998888888888888999999999999999999999999999999988776543567999999999999999


Q ss_pred             HHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccccccc
Q psy10545       1111 LEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGS 1190 (1428)
Q Consensus      1111 L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg 1190 (1428)
                      |++.++|+++++++..++.||.+|+++++.+.|++||..+...|...+||..++++++|||+||++|+||+||+||+.||
T Consensus       401 l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG  480 (501)
T 4dgk_A          401 LEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHPGAGIPGVIGSA  480 (501)
T ss_dssp             HHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEECCCH------HHHHHHHH
T ss_pred             HHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCCCcccHHHHHHHH
Confidence            99757799999999999999999999999999999999999999888999876545999999999999999999999999


Q ss_pred             cccccccc
Q psy10545       1191 KSFSSAIK 1198 (1428)
Q Consensus      1191 ~~~a~~i~ 1198 (1428)
                      +.+|+.|.
T Consensus       481 ~~aA~~il  488 (501)
T 4dgk_A          481 KATAGLML  488 (501)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999885

>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}

Probab=100.00  E-value=8.6e-45  Score=413.57  Aligned_cols=228  Identities=21%  Similarity=0.269  Sum_probs=216.5

Q ss_pred             ccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q psy10545       1189 GSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLAL 1268 (1428)
Q Consensus      1189 sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~l 1268 (1428)
                      .++++...++++|+++|+++++||+|||.+|||+|+..  +.         ...+|++|++.+..++.|.+ .||++.+|
T Consensus        25 ~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~--~~---------~~~~L~~~~~~l~~~~~g~~-~~pv~~al   92 (294)
T 4hd1_A           25 HYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFA--GD---------RMAALDAYEEELRRAFAGEA-TTPAFRAL   92 (294)
T ss_dssp             HCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCC--SC---------HHHHHHHHHHHHHHHHHTCC-CSHHHHHH
T ss_pred             hCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCC--hh---------HHHHHHHHHHHHHHHhcCCC-CCHHHHHH
Confidence            47788888999999999999999999999999999853  21         23589999999999998865 59999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHh
Q psy10545       1269 QKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISR 1348 (1428)
Q Consensus      1269 ~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nilr 1348 (1428)
                      .+++++|+||.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|..+++..+.|+++|+|||+|||||
T Consensus        93 ~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~~~~~~A~~lG~AlQltNilR  172 (294)
T 4hd1_A           93 QFTIATCNLPMEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLDDERARLSDATCTALQVANHMQ  172 (294)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhhhC
Q psy10545       1349 DVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYREI 1428 (1428)
Q Consensus      1349 d~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~~i 1428 (1428)
                      |++||+++||||||.|+|.+||++++|+..+..++++++++.+++++|+.||++|+.++..+|.++++++.+++.+|++|
T Consensus       173 Dv~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~~~~~~~~y~~i  252 (294)
T 4hd1_A          173 DIDRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLARQLKLYRLGGEAI  252 (294)
T ss_dssp             THHHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             hchhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875

>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...

Probab=100.00  E-value=4.5e-44  Score=409.00  Aligned_cols=229  Identities=26%  Similarity=0.343  Sum_probs=216.9

Q ss_pred             ccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC------C
Q psy10545       1187 KAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK------M 1260 (1428)
Q Consensus      1187 ~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~ 1260 (1428)
                      -..++++...++++|++.|+++++||+|||++|||+|++.  ++.          . |+||++.+..++.|.+      +
T Consensus        22 ~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~--~~~----------~-L~~w~~~l~~~~~g~~~~~~~~~   88 (293)
T 3acx_A           22 KKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYG--DIQ----------F-LNQIKEDIQSIEKYPYEYHHFQS   88 (293)
T ss_dssp             HHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTS--STH----------H-HHHHHHHHHHHHHCTTSCCCCSS
T ss_pred             hccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCC--CHH----------H-HHHHHHHHHHHhCCCCcccCCCC
Confidence            3468888899999999999999999999999999999853  222          2 8999999999888887      7


Q ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc-cchHHHHHHHHH
Q psy10545       1261 KEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE-KDTLNCARNLGI 1339 (1428)
Q Consensus      1261 ~~p~~~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~-~~~~~~a~~~g~ 1339 (1428)
                      .||++.+|.+++++|++|.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|..+ ++..+.|++||+
T Consensus        89 ~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~~~~~~~A~~lG~  168 (293)
T 3acx_A           89 DRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGE  168 (293)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999987 778899999999


Q ss_pred             HHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy10545       1340 AFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIV 1419 (1428)
Q Consensus      1340 a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~ 1419 (1428)
                      |+|+||||||++||+++||+|||.|+|++||++++|+..+.+++++++++.+++++|++||.+|+.+++.+|.+++++++
T Consensus       169 AlQltNilRDv~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r~~~~  248 (293)
T 3acx_A          169 SLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIE  248 (293)
T ss_dssp             HHHHHHHHHCHHHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q psy10545       1420 TSWSIYREI 1428 (1428)
Q Consensus      1420 ~a~~~y~~i 1428 (1428)
                      +++.+|++|
T Consensus       249 ~~~~~~~~i  257 (293)
T 3acx_A          249 LAARIYIEI  257 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*

Probab=100.00  E-value=1.3e-36  Score=350.95  Aligned_cols=218  Identities=19%  Similarity=0.203  Sum_probs=185.3

Q ss_pred             ccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHH---hcC-CCCCc
Q psy10545       1187 KAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRA---CIG-FKMKE 1262 (1428)
Q Consensus      1187 ~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~ 1262 (1428)
                      -..+++++-.+++||+++|+++++||+|||.+|||+|++..+. .       ....+|++|++.+...   +.+ .+..+
T Consensus        21 ~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~-~-------~k~~~L~~~~~~l~~~~~~~~~~~~~~~   92 (343)
T 3vj8_A           21 NQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISV-E-------KKVPLLHNFHSFLYQPDWRFMESKEKDR   92 (343)
T ss_dssp             HHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCH-H-------HHHHHHHHHHHHTTCTTCCCCCCCSTTT
T ss_pred             HhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCH-H-------HHHHHHHHHHHHHhcchhhhcCCChhhH
Confidence            3478899999999999999999999999999999999964221 1       2245899999987642   222 23445


Q ss_pred             HHHHHHHHHHHHc-CCC-------HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCcc------
Q psy10545       1263 PAFLALQKIISIH-SFP-------VHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK------ 1328 (1428)
Q Consensus      1263 p~~~~l~~~~~~~-~l~-------~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~------ 1328 (1428)
                      +++..+..++..| .++       .+.+.+|++||++|++ .+|.|++||+.|||+|||+||+|+++++|..+.      
T Consensus        93 ~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~~~  171 (343)
T 3vj8_A           93 QVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVG  171 (343)
T ss_dssp             HHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccchhh
Confidence            6666555555443 333       2345568899999997 799999999999999999999999999987542      


Q ss_pred             chHHHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10545       1329 DTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLN 1408 (1428)
Q Consensus      1329 ~~~~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 1408 (1428)
                      +..+.|++||.|+|+||||||++||+.+||+|||.|+|.+||++++|+..+++++++++++.+++++|+.||.+|+.++.
T Consensus       172 ~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~  251 (343)
T 3vj8_A          172 EDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLS  251 (343)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q psy10545       1409 TLPLR 1413 (1428)
Q Consensus      1409 ~lp~~ 1413 (1428)
                      .||.+
T Consensus       252 ~L~~~  256 (343)
T 3vj8_A          252 RLRNQ  256 (343)
T ss_dssp             TCCCH
T ss_pred             hCCcc
Confidence            99987

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=6.2e-33  Score=339.75  Aligned_cols=400  Identities=18%  Similarity=0.201  Sum_probs=282.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l  788 (1428)
                      +||||||||++||+||++|+++|++|+|||+++++||++.++..+|+.+|.|++++..   ...+.++++++|.+.    
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~----   76 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASV----   76 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCC----
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCc----
Confidence            5899999999999999999999999999999999999999999999999999866542   346788999998542    


Q ss_pred             eEEecCCceEEE-eCC--------CcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHH
Q psy10545        789 NLLPIKPFYRLY-WGK--------EKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIND  859 (1428)
Q Consensus       789 ~~~~~~~~~~~~-~~~--------g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  859 (1428)
                      .+.+.+...... +.+        +..+.+....        ...                               ++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-------------------------------~~~~  117 (425)
T 3ka7_A           77 NIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFP--------SLL-------------------------------SYKD  117 (425)
T ss_dssp             CEEECCCCEEEEESSTTCCSSTTCEEEEEGGGGG--------GGS-------------------------------CHHH
T ss_pred             eEEecCCceEEeecCCCcccccccccceehhhhh--------hhC-------------------------------CHHH
Confidence            233322221111 111        3333322100        000                               0000


Q ss_pred             HHHhhHHHH----hhcccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhH--HHHHHHHhccccceeeecCchHH
Q psy10545        860 MLFILPKLI----KIKAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSS--IYTLIHALEYEWGIWFPKGGVGA  932 (1428)
Q Consensus       860 ~~~~~~~~~----~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~--~~~~~~~~~~~~g~~~~~gG~~~  932 (1428)
                      .......+.    ......++.+|+.+++.++.++.++... ...++.++.+.++  .+..+......++.+++.||++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~  197 (425)
T 3ka7_A          118 RMKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKG  197 (425)
T ss_dssp             HHHHHHHHHHTTTSCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHH
T ss_pred             HHHHHHHHHhhhhcCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHH
Confidence            000000000    1124688999999999999888887643 3446777877776  44444443445678899999999


Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC-CCC--ChhHHHHHhh
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ-YAF--GKKKYMNLIK 1009 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~-~~~--p~~~~~~l~~ 1009 (1428)
                      ++++|++.++++|++|++|++|++|..+++++++|+++ |+++.||.||+|++++.+.+ |+++ ..+  |....+.+++
T Consensus       198 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~-ll~~~~~~~~~~~~~~~~~~  275 (425)
T 3ka7_A          198 IIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAV-LCSEALSKEADAAYFKMVGT  275 (425)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHH-HTTTTCCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHH-hcCCcccccCCHHHHHHhhC
Confidence            99999999999999999999999999999998888875 77899999999999998875 7753 333  6777788899


Q ss_pred             cCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCC
Q psy10545       1010 KKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNL 1089 (1428)
Q Consensus      1010 ~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~ 1089 (1428)
                      +.++ +.+++++++++++  ..++++++.++.               .+...++.+|..||+++|+|++++.++...+. 
T Consensus       276 ~~~~-~~~~v~l~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~-  336 (425)
T 3ka7_A          276 LQPS-AGIKICLAADEPL--VGHTGVLLTPYT---------------RRINGVNEVTQADPELAPPGKHLTMCHQYVAP-  336 (425)
T ss_dssp             CCCB-EEEEEEEEESSCS--SCSSSEEECCSS---------------SSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-
T ss_pred             cCCC-ceEEEEeecCCCc--cCcCEEEECCCh---------------hhcceEEeccCCCCCcCCCCCeEEEEEecccc-
Confidence            9988 5789999999884  345667665432               22456888999999999999999887654321 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCc
Q psy10545       1090 SNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTN 1169 (1428)
Q Consensus      1090 ~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~ 1169 (1428)
                           ++.+..++.++.++++|++ ++|+.+..+.....     |       .+++..+.++    ...+|..++| ++|
T Consensus       337 -----~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~v~~-----~-------~~~~P~~~~~----~~~~~~~~~p-~~g  393 (425)
T 3ka7_A          337 -----ENVKNLESEIEMGLEDLKE-IFPGKRYEVLLIQS-----Y-------HDEWPVNRAA----SGTDPGNETP-FSG  393 (425)
T ss_dssp             -----GGGGGHHHHHHHHHHHHHH-HSTTCCEEEEEEEE-----E-------BTTBCSBSSC----TTCCCCSBCS-SBT
T ss_pred             -----ccccchHHHHHHHHHHHHH-hCCCCceEEEEEEE-----E-------CCCccccccc----cCCCCCCCCC-cCC
Confidence                 1112224557999999998 89985432222111     1       1122111221    1245677776 999


Q ss_pred             eEEecCCccC--CCCcccccccccccccccc
Q psy10545       1170 LYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1170 Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ||+||||+.+  |.||+||+.||+.+++.|.
T Consensus       394 L~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          394 LYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             EEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             eEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            9999999998  5689999999999998774

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=1.3e-31  Score=327.35  Aligned_cols=394  Identities=18%  Similarity=0.219  Sum_probs=279.4

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l  788 (1428)
                      +||+|||||++||+||++|+++|++|+||||++++||+++++..+|+.+|.|++.+..   ...+.++++++|..    .
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~----~   76 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAK----V   76 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCC----C
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCc----c
Confidence            4899999999999999999999999999999999999999999999999999876532   34678899998853    2


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                      ++.+.++...+.+ +|..+.++....       .+.+.+...+..++.....           .               .
T Consensus        77 ~~~~~~~~~~~~~-~g~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~-----------~---------------~  122 (421)
T 3nrn_A           77 EIVNSNPKGKILW-EGKIFHYRESWK-------FLSVKEKAKALKLLAEIRM-----------N---------------K  122 (421)
T ss_dssp             CEEECSSSCEEEE-TTEEEEGGGGGG-------GCC--------CCHHHHHT-----------T---------------C
T ss_pred             eEEECCCCeEEEE-CCEEEEcCCchh-------hCCHhHHHHHHHHHHHHHh-----------c---------------c
Confidence            4555555555554 666666553211       1111111111111100000           0               0


Q ss_pred             hhcccCCHHHHHHhh-cCCHHHHHHHHh-hcccccCCCCchhH--HHHHHHHhccccceeeecCchHHHHHHHHHHHHHc
Q psy10545        869 KIKAWKSVYSIVSQF-IKNDYLKQAFSF-NSLFIGGNPFSTSS--IYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL  944 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~-~~~~~l~~~l~~-~~~~~g~~p~~~s~--~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~  944 (1428)
                      ......++.+|+.++ +.++.++.++.. ....++.++.+.++  ++..+.......|.++++||++.++++|++.++++
T Consensus       123 ~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~~~~  202 (421)
T 3nrn_A          123 LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMEN  202 (421)
T ss_dssp             CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHHHHHC
Confidence            001247889999998 888888877653 34445777777776  44444444445678899999999999999999999


Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeec
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLS 1024 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~ 1024 (1428)
                      |++|++|++|++|..+++++  | +.+|+++.||.||+|++++.+.+ |++.+.+|....+.+.++.++ +.++++++++
T Consensus       203 G~~i~~~~~V~~i~~~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~  277 (421)
T 3nrn_A          203 KGKILTRKEVVEINIEEKKV--Y-TRDNEEYSFDVAISNVGVRETVK-LIGRDYFDRDYLKQVDSIEPS-EGIKFNLAVP  277 (421)
T ss_dssp             TCEEESSCCEEEEETTTTEE--E-ETTCCEEECSEEEECSCHHHHHH-HHCGGGSCHHHHHHHHTCCCC-CEEEEEEEEE
T ss_pred             CCEEEcCCeEEEEEEECCEE--E-EeCCcEEEeCEEEECCCHHHHHH-hcCcccCCHHHHHHHhCCCCC-ceEEEEEEEc
Confidence            99999999999999888885  5 45778999999999999998875 887555777777889999998 7899999999


Q ss_pred             CCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHH
Q psy10545       1025 EQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLK 1104 (1428)
Q Consensus      1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~ 1104 (1428)
                      ++  .+.++++++.++..                ...++.+|..||+++|+|++++.+....+...        . ++..
T Consensus       278 ~~--~~~~~~~~~~~~~~----------------~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~--------~-~~~~  330 (421)
T 3nrn_A          278 GE--PRIGNTIVFTPGLM----------------INGFNEPSALDKSLAREGYTLIMAHMALKNGN--------V-KKAI  330 (421)
T ss_dssp             SS--CSSCSSEEECTTSS----------------SCEEECGGGTCGGGSCTTEEEEEEEEECTTCC--------H-HHHH
T ss_pred             CC--cccCCeEEEcCCcc----------------eeeEeccCCCCCCcCCCCceEEEEEEeecccc--------H-HHHH
Confidence            87  24566777765432                22478899999999999999988887664321        1 2447


Q ss_pred             HHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCc-
Q psy10545       1105 NIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAAN- 1183 (1428)
Q Consensus      1105 ~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv- 1183 (1428)
                      +.++++|++ .+|  ...+...... +..+..         +...+.      .++. .+ + +|||+|||++.+++|+ 
T Consensus       331 ~~~~~~L~~-~~p--~~~~~~~~~~-~~~~p~---------~~~~~~------~~~~-~~-~-~gl~laGd~~~~~~g~~  388 (421)
T 3nrn_A          331 EKGWEELLE-IFP--EGEPLLAQVY-RDGNPV---------NRTRAG------LHIE-WP-L-NEVLVVGDGYRPPGGIE  388 (421)
T ss_dssp             HHHHHHHHH-HCT--TCEEEEEEEC-----------------------------CCC-CC-C-SSEEECSTTCCCTTCCH
T ss_pred             HHHHHHHHH-HcC--CCeEEEeeec-cCCCCc---------ccccCC------CCCC-CC-C-CcEEEECCcccCCCcee
Confidence            899999998 888  2222222211 111100         100000      1122 34 4 9999999999977666 


Q ss_pred             -cccccccccccccc
Q psy10545       1184 -KIIKAGSKSFSSAI 1197 (1428)
Q Consensus      1184 -~GA~~sg~~~a~~i 1197 (1428)
                       +||+.||+.+|+.|
T Consensus       389 ~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          389 VDGIALGVMKALEKL  403 (421)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             eehHHHHHHHHHHHh
Confidence             99999999999987

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.96  E-value=1.2e-29  Score=315.51  Aligned_cols=418  Identities=13%  Similarity=0.102  Sum_probs=271.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      .++||+|||||++||+||+.|+++|++|+|||+++++||+++|.+.+|+.+|.|++++.. ...+.++++++|+.  +.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~--~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLE--GRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCG--GGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCc--cee
Confidence            468999999999999999999999999999999999999999999999999999999875 45678899999953  222


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                      ..........+.+.+|+.+.++.+...+..   . ....      +....+ ..    ......+..             
T Consensus        93 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~---~-~~~~------~~~~~~-~~----~~~~~~~~~-------------  144 (478)
T 2ivd_A           93 RAADPAAKRRYVYTRGRLRSVPASPPAFLA---S-DILP------LGARLR-VA----GELFSRRAP-------------  144 (478)
T ss_dssp             ECSCSSCCCEEEEETTEEEECCCSHHHHHT---C-SSSC------HHHHHH-HH----GGGGCCCCC-------------
T ss_pred             eecCccccceEEEECCEEEECCCCHHHhcc---C-CCCC------HHHHHH-Hh----hhhhcCCCC-------------
Confidence            211111233455667777777665433211   0 0000      000000 00    011110000             


Q ss_pred             hhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHHH--HHHH-----------h-------------c-cc
Q psy10545        869 KIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIYT--LIHA-----------L-------------E-YE  920 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~~--~~~~-----------~-------------~-~~  920 (1428)
                       .....++.+|+.+.+.++..+.++. .....++.+|.+.++...  .+..           +             . ..
T Consensus       145 -~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (478)
T 2ivd_A          145 -EGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTA  223 (478)
T ss_dssp             -TTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCS
T ss_pred             -CCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccccc
Confidence             1236799999999888777777665 334556777877765221  1100           0             0 11


Q ss_pred             ----cceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545        921 ----WGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQIFDADIIVSNADIINTYRNL  993 (1428)
Q Consensus       921 ----~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~L  993 (1428)
                          .+.++++||++.|+++|++.+   |++|+++++|++|..++++ +.|++   .+|+++.||+||+|+|+..+.. +
T Consensus       224 ~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~-l  298 (478)
T 2ivd_A          224 PKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAK-L  298 (478)
T ss_dssp             CCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHH-H
T ss_pred             ccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecCCe-EEEEEeecCCCceEEcCEEEECCCHHHHHH-H
Confidence                467899999999999999887   5799999999999988776 67887   6788899999999999887765 6


Q ss_pred             cCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCC
Q psy10545        994 LGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSL 1072 (1428)
Q Consensus       994 l~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ 1072 (1428)
                      ++  .+|+...+.++++.++ +..++++.+++++ +.......+++ ..             .+.+...+.+++..+|+.
T Consensus       299 l~--~l~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~s~~~~~~  361 (478)
T 2ivd_A          299 LR--PLDDALAALVAGIAYA-PIAVVHLGFDAGTLPAPDGFGFLVP-AE-------------EQRRMLGAIHASTTFPFR  361 (478)
T ss_dssp             HT--TTCHHHHHHHHTCCBC-CEEEEEEEECTTSSCCCCSSEEECC-GG-------------GCCSCCEEEEHHHHCGGG
T ss_pred             hh--ccCHHHHHHHhcCCCC-cEEEEEEEEccccCCCCCceEEEec-CC-------------CCCceEEEEEEcccCCCc
Confidence            64  3677777889999988 7889999999884 32112222221 10             112334455565556667


Q ss_pred             CCCCccEEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccc
Q psy10545       1073 APTGCSTFYALIPVPNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPL 1151 (1428)
Q Consensus      1073 ap~G~~~l~v~~~~p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~ 1151 (1428)
                      +|+|+.++++++..+...    .| +..++++.+.++++|++ .+|... .+....+.   .|       .++...+.++
T Consensus       362 ~p~g~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-~~~~~~-~p~~~~~~---~w-------~~~~p~~~~g  425 (478)
T 2ivd_A          362 AEGGRVLYSCMVGGARQP----GLVEQDEDALAALAREELKA-LAGVTA-RPSFTRVF---RW-------PLGIPQYNLG  425 (478)
T ss_dssp             BSTTCEEEEEEEECTTCG----GGGGSCHHHHHHHHHHHHHH-HHCCCS-CCSEEEEE---EE-------SSCCBCCBTT
T ss_pred             CCCCCEEEEEEeCCcCCc----cccCCCHHHHHHHHHHHHHH-HhCCCC-CCcEEEEE---EC-------CCcccCCCcC
Confidence            788887777776543321    23 34568899999999998 777643 22211110   11       1111111111


Q ss_pred             cc-cccccCCCCCCCCCCceEEecCCccCCCCccccccccccccccccc
Q psy10545       1152 LT-QSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1152 ~~-q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      .. .....++....  ++||||||+++ +|.||+||+.||+.+|+.|..
T Consensus       426 ~~~~~~~~~~~~~~--~~~l~~aG~~~-~g~gv~gA~~SG~~aA~~i~~  471 (478)
T 2ivd_A          426 HLERVAAIDAALQR--LPGLHLIGNAY-KGVGLNDCIRNAAQLADALVA  471 (478)
T ss_dssp             HHHHHHHHHHHHHT--STTEEECSTTT-SCCSHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhh--CCCEEEEccCC-CCCCHHHHHHHHHHHHHHHHH
Confidence            10 00001111111  58999999998 577899999999999998853

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.96  E-value=5.3e-28  Score=298.43  Aligned_cols=425  Identities=12%  Similarity=0.066  Sum_probs=265.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      +.++||+|||||++||+||++|+++|++|+|+|+++++||++.+...+|+.+|.|++++.. ...+.++++++|++... 
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-   81 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFE-   81 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEE-
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCcccc-
Confidence            4568999999999999999999999999999999999999999999999999999999865 34667888999864211 


Q ss_pred             ceEEecCCceEEEeCC-CcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        788 VNLLPIKPFYRLYWGK-EKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                          .......+.+.+ |..+.+.....       ...+.....+..++..+..+.....   ...++..        +.
T Consensus        82 ----~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~  139 (453)
T 2yg5_A           82 ----RYREGESVYISSAGERTRYTGDSF-------PTNETTKKEMDRLIDEMDDLAAQIG---AEEPWAH--------PL  139 (453)
T ss_dssp             ----CCCCSEEEEECTTSCEEEECSSSC-------SCCHHHHHHHHHHHHHHHHHHHHHC---SSCGGGS--------TT
T ss_pred             ----cccCCCEEEEeCCCceeeccCCCC-------CCChhhHHHHHHHHHHHHHHHhhcC---CCCCCCC--------cc
Confidence                111122222332 55555432110       0001111112222222222222100   0011111        00


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHHhhc-ccccCCCC-chhHHHHHHHHhcc-----------ccceeeecCchHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS-LFIGGNPF-STSSIYTLIHALEY-----------EWGIWFPKGGVGAL  933 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~-~~~g~~p~-~~s~~~~~~~~~~~-----------~~g~~~~~gG~~~l  933 (1428)
                      ... ....++.+|+.+.+.++.++.++.... ..++.+|. +.++.+.+. ++..           ....++++||++.+
T Consensus       140 ~~~-~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~gG~~~l  217 (453)
T 2yg5_A          140 ARD-LDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVL-MAASAGSFSHLVDEDFILDKRVIGGMQQV  217 (453)
T ss_dssp             HHH-HHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHH-HHHHTTCHHHHHCHHHHTCEEETTCTHHH
T ss_pred             hhh-hhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHH-HhccCCcHhhhccCCCcceEEEcCChHHH
Confidence            011 136899999999999999988877543 45577887 777644322 1111           11246899999999


Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCC
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMS 1013 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~ 1013 (1428)
                      +++|++.+   |++|++|++|++|..++++.+.|++ +|+++.||+||+|+|+..+. .++..+.+|..+.+.++++.++
T Consensus       218 ~~~l~~~l---g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~-~l~~~p~lp~~~~~~i~~~~~~  292 (453)
T 2yg5_A          218 SIRMAEAL---GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYS-RISYDPPLPRRQHQMHQHQSLG  292 (453)
T ss_dssp             HHHHHHHH---GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGG-GSEEESCCCHHHHHHGGGEEEC
T ss_pred             HHHHHHhc---CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHh-cCEeCCCCCHHHHHHHhcCCCc
Confidence            99998866   7899999999999998886345766 67789999999999888654 4665667888888889999887


Q ss_pred             CceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCC-ccEEEEEEecCCCCC
Q psy10545       1014 NSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTG-CSTFYALIPVPNLSN 1091 (1428)
Q Consensus      1014 ~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G-~~~l~v~~~~p~~~~ 1091 (1428)
                       +..++++.+++++ +........+.                ++.+...+..++      .|++ +.++.+++..+..  
T Consensus       293 -~~~kv~l~~~~~~w~~~~~~g~~~~----------------~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~--  347 (453)
T 2yg5_A          293 -LVIKVHAVYETPFWREDGLSGTGFG----------------ASEVVQEVYDNT------NHEDDRGTLVAFVSDEKA--  347 (453)
T ss_dssp             -CEEEEEEEESSCGGGGGTEEEEEEC----------------TTSSSCEEEECC------CTTCSSEEEEEEEEHHHH--
T ss_pred             -ceEEEEEEECCCCCCCCCCCceeec----------------CCCCeEEEEeCC------CCCCCCCEEEEEeccHHH--
Confidence             6889999999884 32111111121                111222222222      3344 3456666543211  


Q ss_pred             CCCCcHH-HHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccc-cccccccccccCCCCCCCCCCc
Q psy10545       1092 SSINWSE-ESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFS-FAPLLTQSAWFRPHNRDKNLTN 1169 (1428)
Q Consensus      1092 ~~~~~~~-~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g-~~~~~~q~~~~rp~~~t~~i~~ 1169 (1428)
                        ..|.. +++++++.++++|++ ++|.-.........   .+|.+. ....|+..+ +.++  +....++..++| ++|
T Consensus       348 --~~~~~~~~~~~~~~~l~~L~~-~~~~~~~~p~~~~~---~~W~~~-~~~~G~~~~~~~~g--~~~~~~~~~~~p-~~~  417 (453)
T 2yg5_A          348 --DAMFELSAEERKATILASLAR-YLGPKAEEPVVYYE---SDWGSE-EWTRGCYAASFDLG--GLHRYGADSRTP-VGP  417 (453)
T ss_dssp             --HHHHHSCHHHHHHHHHHHHHH-HHCGGGGCCSEEEE---CCTTTC-TTTCSSSCEEECTT--HHHHHGGGTTCC-BTT
T ss_pred             --HHHhcCCHHHHHHHHHHHHHH-HhCccCCCccEEEE---eecCCC-CCCCCCCcCcCCCC--ccccchHHHhCC-cCc
Confidence              13433 467889999999998 66531111111111   122221 112344221 1222  111123455666 899


Q ss_pred             eEEecCCccC--CCCcccccccccccccccc
Q psy10545       1170 LYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1170 Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |||||++|++  .++|+||+.||+.+|+.|.
T Consensus       418 l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~  448 (453)
T 2yg5_A          418 IHFSCSDIAAEGYQHVDGAVRMGQRTAADII  448 (453)
T ss_dssp             EEECCGGGCSTTTTSHHHHHHHHHHHHHHHH
T ss_pred             eEEeecccccccccchHHHHHHHHHHHHHHH
Confidence            9999999853  1279999999999999885

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.96  E-value=8.1e-29  Score=310.83  Aligned_cols=426  Identities=14%  Similarity=0.139  Sum_probs=270.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC-CeEEcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD-GFIFDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~-G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      ++||||||||++||+||++|+++|++|+|||+++++||+++|.+.. |+.+|.|++++.. .+.+.++++++|++...  
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~--   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYK--   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEE--
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCccee--
Confidence            5799999999999999999999999999999999999999999985 9999999999875 45677889999864321  


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                        .. .......+.+|..+.++.....      ...+.....+..++.....+.... .  ...++..        +...
T Consensus        82 --~~-~~~~~~~~~~g~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~--------~~~~  141 (520)
T 1s3e_A           82 --VN-EVERLIHHVKGKSYPFRGPFPP------VWNPITYLDHNNFWRTMDDMGREI-P--SDAPWKA--------PLAE  141 (520)
T ss_dssp             --CC-CSSEEEEEETTEEEEECSSSCC------CCSHHHHHHHHHHHHHHHHHHTTS-C--TTCGGGS--------TTHH
T ss_pred             --cc-cCCceEEEECCEEEEecCCCCC------CCCHHHHHHHHHHHHHHHHHHhhc-C--cCCCccc--------cchh
Confidence              11 1122233445665555432100      000111122233333333322110 0  0011110        0000


Q ss_pred             hhcccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhHHHHHHHHhc------------cccceeeecCchHHHHH
Q psy10545        869 KIKAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTLIHALE------------YEWGIWFPKGGVGALIK  935 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~~~~~~~~~~------------~~~g~~~~~gG~~~l~~  935 (1428)
                      . ....++.+|+.+.+.++.++.++... ...++.++.+.++.+.+. ++.            .....++++||++.+++
T Consensus       142 ~-~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~  219 (520)
T 1s3e_A          142 E-WDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLW-YVKQCGGTTRIISTTNGGQERKFVGGSGQVSE  219 (520)
T ss_dssp             H-HHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHH-HHHTTTCHHHHHCSTTSTTSEEETTCTHHHHH
T ss_pred             h-hhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHHHH-HHhhcCchhhhcccCCCcceEEEeCCHHHHHH
Confidence            1 13689999999999999988887743 356678888887644322 111            11224689999999999


Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCc
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNS 1015 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s 1015 (1428)
                      +|++.+   |++|++|++|++|..+++++ .|++.+|+++.||+||+|+|+..+. .++.++.+|..+.+.++++.++ +
T Consensus       220 ~l~~~l---g~~i~~~~~V~~i~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~-~l~~~p~lp~~~~~~i~~~~~~-~  293 (520)
T 1s3e_A          220 RIMDLL---GDRVKLERPVIYIDQTRENV-LVETLNHEMYEAKYVISAIPPTLGM-KIHFNPPLPMMRNQMITRVPLG-S  293 (520)
T ss_dssp             HHHHHH---GGGEESSCCEEEEECSSSSE-EEEETTSCEEEESEEEECSCGGGGG-GSEEESCCCHHHHHHTTSCCBC-C
T ss_pred             HHHHHc---CCcEEcCCeeEEEEECCCeE-EEEECCCeEEEeCEEEECCCHHHHc-ceeeCCCCCHHHHHHHHhCCCc-c
Confidence            998876   78999999999999888774 4888999999999999999988765 4665667888888899999987 6


Q ss_pred             eEEEEEeecCCc-CCCcceE-EEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545       1016 LFVIYFGLSEQY-THLAHHT-IFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus      1016 ~~~v~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
                      ..++++.+++++ +...... +++..               .+.+..++..+     +..+.+..++..++..+..    
T Consensus       294 ~~kv~l~~~~~~w~~~~~~g~~~~~~---------------~~~~~~~~~d~-----~~~~~~~~~l~~~~~~~~a----  349 (520)
T 1s3e_A          294 VIKCIVYYKEPFWRKKDYCGTMIIDG---------------EEAPVAYTLDD-----TKPEGNYAAIMGFILAHKA----  349 (520)
T ss_dssp             EEEEEEECSSCGGGGGTEEEEEEECS---------------TTCSCSEEEEC-----CCTTSCSCEEEEEEETHHH----
T ss_pred             eEEEEEEeCCCcccCCCCCceeeccC---------------CCCceEEEeeC-----CCCCCCCCEEEEEccchhh----
Confidence            889999999984 3221111 12111               01122222222     2222334566666543211    


Q ss_pred             CCcHH-HHHHHHHHHHHHHHhccCCCc-cCceEEEEecCcccHHHHhCCCCCccccc-ccccccccccCCCCCCCCCCce
Q psy10545       1094 INWSE-ESIKLKNIVFMYLEQYCIPNL-RKKLITQRIFTPNDFKDVLGSYLGSAFSF-APLLTQSAWFRPHNRDKNLTNL 1170 (1428)
Q Consensus      1094 ~~~~~-~~ee~~~~vl~~L~~~~~P~l-~~~i~~~~~~tp~~~~~~~~~~~G~~~g~-~~~~~q~~~~rp~~~t~~i~~L 1170 (1428)
                      ..|.. +++++.+.++++|++ ++|.- .........   ..|.+. ....|+..+. .++  +....++..++| ++||
T Consensus       350 ~~~~~~~~~e~~~~vl~~L~~-~~~~~~~~~p~~~~~---~~W~~~-~~~~G~~~~~~~~g--~~~~~~~~l~~p-~~~L  421 (520)
T 1s3e_A          350 RKLARLTKEERLKKLCELYAK-VLGSLEALEPVHYEE---KNWCEE-QYSGGCYTTYFPPG--ILTQYGRVLRQP-VDRI  421 (520)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHH-HHTCGGGGCCSEEEE---EEGGGC-TTTCSSSCBCCCTT--HHHHHGGGTTCC-BTTE
T ss_pred             hhhhcCCHHHHHHHHHHHHHH-HhCccccCCccEEEE---EeeCCC-CCCCCCCccccCCC--ccccchHHHhCC-CCCE
Confidence            12322 467889999999998 67642 111111111   122221 1223443321 222  111234455666 8999


Q ss_pred             EEecCCccC--CCCcccccccccccccccc
Q psy10545       1171 YFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1171 y~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ||||++|.+  .++|+||+.||..+|+.|.
T Consensus       422 ~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~  451 (520)
T 1s3e_A          422 YFAGTETATHWSGYMEGAVEAGERAAREIL  451 (520)
T ss_dssp             EECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             EEeehhhcCcCcEEhHHHHHHHHHHHHHHH
Confidence            999999842  2379999999999999885

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.95  E-value=3.9e-27  Score=289.14  Aligned_cols=389  Identities=14%  Similarity=0.179  Sum_probs=255.6

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCC-eE---------------Eccc--------c
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDG-FI---------------FDAG--------P  764 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G-~~---------------~d~G--------~  764 (1428)
                      +.++||||||||++||+||+.|+++|++|+|+|+++++||+++|++.+| +.               ++.|        +
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P   88 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIP   88 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeecccc
Confidence            3568999999999999999999999999999999999999999987655 22               2333        3


Q ss_pred             cccCCchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHHHH
Q psy10545        765 TVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDN-IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFK  843 (1428)
Q Consensus       765 ~~i~~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  843 (1428)
                      +++..++.+.++++++|.  .+++++.+.+..+  .+.+|+.+.++.+ .+.+...+...+  +...+.+|+..+.....
T Consensus        89 ~~l~~~~~l~~ll~~lg~--~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~  162 (453)
T 2bcg_G           89 KFLMANGELTNILIHTDV--TRYVDFKQVSGSY--VFKQGKIYKVPANEIEAISSPLMGIF--EKRRMKKFLEWISSYKE  162 (453)
T ss_dssp             CBEETTSHHHHHHHHHTG--GGTCCEEECCCEE--EEETTEEEECCSSHHHHHHCTTSCHH--HHHHHHHHHHHHHHCBT
T ss_pred             ceeecCcHHHHHHHhcCC--ccceEEEEcccee--EEeCCeEEECCCChHHHHhhhccchh--hHHHHHHHHHHHHHhcc
Confidence            333355678899999994  5567787777543  3557888888887 444443332221  34455555554443211


Q ss_pred             HhhhhhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccC-----CCCchhHHHHHHHHh-
Q psy10545        844 EGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGG-----NPFSTSSIYTLIHAL-  917 (1428)
Q Consensus       844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~-----~p~~~s~~~~~~~~~-  917 (1428)
                      .       .|. .+    .    ... ....++.+|+.+++.++.++.++.......+.     .|...+. ..+..+. 
T Consensus       163 ~-------~p~-~~----~----~~~-~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~-~~~~~~~~  224 (453)
T 2bcg_G          163 D-------DLS-TH----Q----GLD-LDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSF-ERILLYCQ  224 (453)
T ss_dssp             T-------BGG-GS----T----TCC-TTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHH-HHHHHHHH
T ss_pred             C-------Cch-hh----h----ccc-cccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHH-HHHHHHHH
Confidence            0       010 00    0    001 13678999999999999999887643332111     2221111 1111111 


Q ss_pred             ---cccccee-eecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545        918 ---EYEWGIW-FPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       918 ---~~~~g~~-~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~  991 (1428)
                         ....+.| +|+||++.++++|++.+++.|++|+++++|++|..+  ++++++|++ +|+++.||+||+|++++..  
T Consensus       225 s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~--  301 (453)
T 2bcg_G          225 SVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE--  301 (453)
T ss_dssp             HHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG--
T ss_pred             HHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch--
Confidence               1223455 999999999999999999999999999999999998  888888887 5778999999999977611  


Q ss_pred             HhcCCCCCChhHHHHHhhcC-CCCceEEEEEeecCCcCC---CcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCC
Q psy10545        992 NLLGQYAFGKKKYMNLIKKK-MSNSLFVIYFGLSEQYTH---LAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067 (1428)
Q Consensus       992 ~Ll~~~~~p~~~~~~l~~~~-~~~s~~~v~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 1067 (1428)
                                    .+.+.. ++++.+++   +++++|.   ..++.++++.            +.++.++.+|++.++.
T Consensus       302 --------------~l~~~~~~~~~~~~i---~~~~~~~~~~~~~~~ii~~~------------~~~~~~~~~~v~~~s~  352 (453)
T 2bcg_G          302 --------------KCKSTGQRVIRAICI---LNHPVPNTSNADSLQIIIPQ------------SQLGRKSDIYVAIVSD  352 (453)
T ss_dssp             --------------GEEEEEEEEEEEEEE---ESSCCTTSTTCSSEEEEECG------------GGTTCSSCEEEEEEEG
T ss_pred             --------------hhcccCCcceeEEEE---EccccCCCCCCccEEEEeCc------------cccCCCCCEEEEEeCC
Confidence                          122223 34344444   7888763   3455665531            2245678999999998


Q ss_pred             CCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccc
Q psy10545       1068 TDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFS 1147 (1428)
Q Consensus      1068 ~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g 1147 (1428)
                      .| +++|+|++++++++++|...        ..++    +...++. +.|.....+...+                 .+.
T Consensus       353 ~d-~~aP~G~~~~~v~~~~~~~~--------~~~~----l~~~~~~-l~~~~~~~~~~~~-----------------~~~  401 (453)
T 2bcg_G          353 AH-NVCSKGHYLAIISTIIETDK--------PHIE----LEPAFKL-LGPIEEKFMGIAE-----------------LFE  401 (453)
T ss_dssp             GG-TSSCTTCEEEEEEEECCSSC--------HHHH----THHHHGG-GCSCSEEEEEEEE-----------------EEE
T ss_pred             CC-CCCCCCcEEEEEEEecCCCC--------HHHH----HHHHHHH-hhhHHHhhccchh-----------------eee
Confidence            88 89999999999999876532        1222    2344454 4443322111111                 010


Q ss_pred             cccccccccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1148 FAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1148 ~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                                  |.... .-+|+|++|++.. ...+++++.+++.++++|.
T Consensus       402 ------------~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  438 (453)
T 2bcg_G          402 ------------PREDG-SKDNIYLSRSYDA-SSHFESMTDDVKDIYFRVT  438 (453)
T ss_dssp             ------------ESSCS-TTTSEEECCCCCS-CSBSHHHHHHHHHHHHHHH
T ss_pred             ------------ecCCC-CCCCEEECCCCCc-cccHHHHHHHHHHHHHHHH
Confidence                        11111 1489999998875 3457999999999888875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.95  E-value=1.4e-26  Score=288.97  Aligned_cols=420  Identities=14%  Similarity=0.053  Sum_probs=258.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      +||+|||||++||+||++|+++|++|+|||+++++|||++|.+.+|+.+|.|+++++. ...+.++++++|+  .+.+..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl--~~~~~~  117 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKM--HNALSP  117 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTC--TTCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCC--cceeec
Confidence            7999999999999999999999999999999999999999999999999999999974 3456677788885  222222


Q ss_pred             Ee--cCCceEEEeCC--CcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH---hhhhhcccCcccHHHHHHh
Q psy10545        791 LP--IKPFYRLYWGK--EKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKE---GYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       791 ~~--~~~~~~~~~~~--g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  863 (1428)
                      ..  ......+.+.+  |....++.  ......+           .   .....+...   ....+...++..+.   . 
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~-  177 (495)
T 2vvm_A          118 SFNFSRGVNHFQLRTNPTTSTYMTH--EAEDELL-----------R---SALHKFTNVDGTNGRTVLPFPHDMFY---V-  177 (495)
T ss_dssp             SCCCSSSCCEEEEESSTTCCEEECH--HHHHHHH-----------H---HHHHHHHCSSSSTTTTTCSCTTSTTS---S-
T ss_pred             ccccCCCceEEEecCCCCceeecCH--HHHHHHH-----------H---HHHHHHHccchhhhhhcCCCCCCccc---C-
Confidence            21  11222333433  44444432  1111100           0   011111110   00011111111100   0 


Q ss_pred             hHHHHhhcccCCHHHHHHhhc--CCHHHHHHHHhh-cccccCCCCchhHHHHHHHH--h-------ccccceeeecCchH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFI--KNDYLKQAFSFN-SLFIGGNPFSTSSIYTLIHA--L-------EYEWGIWFPKGGVG  931 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~--~~~~l~~~l~~~-~~~~g~~p~~~s~~~~~~~~--~-------~~~~g~~~~~gG~~  931 (1428)
                       +....+ +..++.+|+.+..  .++..+.++... ..+++.++.+.++...+...  .       ....+.++++||++
T Consensus       178 -~~~~~~-~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~  255 (495)
T 2vvm_A          178 -PEFRKY-DEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQS  255 (495)
T ss_dssp             -TTHHHH-HTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHH
T ss_pred             -cchhhh-hhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHH
Confidence             001112 3678999999876  567777777643 34456677777653322111  0       11235678999999


Q ss_pred             HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhc
Q psy10545        932 ALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~ 1010 (1428)
                      .+++.|.+.+++.| ++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+.. +...+.+|..+.++++++
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vI~a~~~~~l~~-i~~~p~lp~~~~~ai~~~  333 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAKRVVCTIPLNVLST-IQFSPALSTERISAMQAG  333 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS-EEEEETTCCEEEEEEEEECCCGGGGGG-SEEESCCCHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcCEEEECCCHHHHhh-eeeCCCCCHHHHHHHHhc
Confidence            99999999999999 999999999999988776 568888898899999999999887754 554566888888999999


Q ss_pred             CCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCC
Q psy10545       1011 KMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLS 1090 (1428)
Q Consensus      1011 ~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~ 1090 (1428)
                      .+. +..+|++.+++++.  .....+..+                +.+..++...     ...|.|..++..++..  ..
T Consensus       334 ~~~-~~~kv~l~~~~~~~--~~~~g~~~~----------------~~~~~~~~~~-----~~~~~~~~vl~~~~~~--~~  387 (495)
T 2vvm_A          334 HVS-MCTKVHAEVDNKDM--RSWTGIAYP----------------FNKLCYAIGD-----GTTPAGNTHLVCFGNS--AN  387 (495)
T ss_dssp             CCC-CCEEEEEEESCGGG--GGEEEEECS----------------SCSSCEEEEE-----EECTTSCEEEEEEECS--TT
T ss_pred             CCC-ceeEEEEEECCccC--CCceeEecC----------------CCCcEEEecC-----CCCCCCCeEEEEEeCc--cc
Confidence            987 57899999998741  111111111                1111112111     1234565666655421  11


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCce
Q psy10545       1091 NSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNL 1170 (1428)
Q Consensus      1091 ~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~L 1170 (1428)
                          .+  ..++..+.++++|++ ++|+.. .+....+   ..|.+..+. .|+...+.++..  ...++..+.| ++||
T Consensus       388 ----~~--~~~e~~~~~~~~L~~-~~~~~~-~~~~~~~---~~W~~dp~~-~g~y~~~~~g~~--~~~~~~l~~p-~~~l  452 (495)
T 2vvm_A          388 ----HI--QPDEDVRETLKAVGQ-LAPGTF-GVKRLVF---HNWVKDEFA-KGAWFFSRPGMV--SECLQGLREK-HGGV  452 (495)
T ss_dssp             ----CC--CTTTCHHHHHHHHHT-TSTTSC-CEEEEEE---CCTTTCTTT-SSSSCCCCTTHH--HHHHHHHHCC-BTTE
T ss_pred             ----cC--CCHHHHHHHHHHHHH-hcCCCC-CceEEEE---eEcCCCCCC-CCCccCcCCCcc--hhhHHHHhCc-CCCE
Confidence                11  123445678899997 777632 2222211   123222111 233211222211  0112333444 7899


Q ss_pred             EEecCCccC--CCCcccccccccccccccc
Q psy10545       1171 YFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1171 y~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ||||+++.+  +++|+||+.||..+|..|.
T Consensus       453 ~fAGe~t~~~~~g~veGAi~SG~raA~~i~  482 (495)
T 2vvm_A          453 VFANSDWALGWRSFIDGAIEEGTRAARVVL  482 (495)
T ss_dssp             EECCGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             EEechhhhcCCceEEEhHHHHHHHHHHHHH
Confidence            999999864  3579999999999998874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.95  E-value=6.1e-28  Score=302.13  Aligned_cols=426  Identities=17%  Similarity=0.175  Sum_probs=264.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      .++||+|||||++||+||+.|+++|++|+|+|+++++||+++|...+|+.+|.|++++.. ...+.++++++|+..  ..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~--~~   89 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLRE--KQ   89 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGG--GE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcc--cc
Confidence            358999999999999999999999999999999999999999999999999999999975 356788999999642  22


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                      .+. ......+.+.+|+.+.++.+...+...  ... .....+       +....    .+.......        ..  
T Consensus        90 ~~~-~~~~~~~~~~~g~~~~~p~~~~~~~~~--~~~-~~~~~~-------~~~~~----~~~~~~~~~--------~~--  144 (504)
T 1sez_A           90 QFP-LSQNKRYIARNGTPVLLPSNPIDLIKS--NFL-STGSKL-------QMLLE----PILWKNKKL--------SQ--  144 (504)
T ss_dssp             ECC-SSCCCEEEESSSSEEECCSSHHHHHHS--SSS-CHHHHH-------HHHTH----HHHC-----------------
T ss_pred             eec-cCCCceEEEECCeEEECCCCHHHHhcc--ccC-CHHHHH-------HHhHh----hhccCcccc--------cc--
Confidence            221 122335567788888877765433211  000 000001       00000    010000000        00  


Q ss_pred             hhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHH--HHHHHh----------------c-----------
Q psy10545        869 KIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIY--TLIHAL----------------E-----------  918 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~--~~~~~~----------------~-----------  918 (1428)
                      ......|+.+|+.+++.++.++.++.. ....++.+|.+.++..  ..+..+                .           
T Consensus       145 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  224 (504)
T 1sez_A          145 VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPK  224 (504)
T ss_dssp             ---CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------C
T ss_pred             cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccc
Confidence            012368999999999888888877763 3455677777765421  111110                0           


Q ss_pred             ------cccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeE-----EEEEec--CC---cEEEcCEEEE
Q psy10545        919 ------YEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKV-----NKVHLK--NG---QIFDADIIVS  982 (1428)
Q Consensus       919 ------~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v-----~~V~~~--~G---~~i~ad~VV~  982 (1428)
                            ...+.++++||++.|+++|++.+.+  ++|++|++|++|..++++.     +.|++.  +|   +++.||+||+
T Consensus       225 ~~~~~~~~~~~~~~~GG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~  302 (504)
T 1sez_A          225 TSANKKRQRGSFSFLGGMQTLTDAICKDLRE--DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIM  302 (504)
T ss_dssp             CCSCCSTTCSCBEETTCTHHHHHHHHTTSCT--TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEE
T ss_pred             hhhccccCCceEeeCcHHHHHHHHHHhhccc--ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEE
Confidence                  0124678999999999999876532  7899999999999987762     566654  46   5789999999


Q ss_pred             cCCHHHHHHHhcC---CCCCChhHHHHHhhcCCCCceEEEEEeecCCc-C-CCcceEEEcCCChHHHHHHHhcCCCCCCC
Q psy10545        983 NADIINTYRNLLG---QYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-T-HLAHHTIFFPSNYKKSIENIFGKNFSRDN 1057 (1428)
Q Consensus       983 A~~~~~~~~~Ll~---~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1428)
                      |+|+..+.+ ++.   ..++++.   .+.++.+. ++.++++.+++++ + ++..+.++++ +.+.      ..+    .
T Consensus       303 a~p~~~l~~-ll~~~~~~~~~~~---~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~l~~-~~~~------~~g----~  366 (504)
T 1sez_A          303 TAPLCDVKS-MKIAKRGNPFLLN---FIPEVDYV-PLSVVITTFKRENVKYPLEGFGVLVP-SKEQ------QHG----L  366 (504)
T ss_dssp             CSCHHHHHT-SEEESSSSBCCCT---TSCCCCEE-EEEEEEEEEEGGGBSSCCCSSEEECC-GGGG------GGT----C
T ss_pred             CCCHHHHHH-HhhcccCCcccHH---HHhcCCCC-ceEEEEEEEchhhcCCCCCceEEEcC-CCCC------CCC----C
Confidence            999887775 552   1223322   25566665 6889999999883 3 2333455453 2221      001    1


Q ss_pred             ceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHH
Q psy10545       1058 LSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKD 1136 (1428)
Q Consensus      1058 ~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~ 1136 (1428)
                      +...+.+++..+|..+|+|+.++++++..+..    ..| ..+++++++.++++|++ ++|.-. ......+.   .|..
T Consensus       367 ~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~----~~~~~~~~ee~~~~v~~~L~~-~~g~~~-~p~~~~~~---~w~~  437 (504)
T 1sez_A          367 KTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRN----RELAKASRTELKEIVTSDLKQ-LLGAEG-EPTYVNHL---YWSK  437 (504)
T ss_dssp             CSSEEEEHHHHCGGGSCTTEEEEEEEEESTTC----GGGTTCCHHHHHHHHHHHHHH-HHCBCS-CCSSEEEE---EEEE
T ss_pred             ccceEEeeccccCCcCCCCCEEEEEEeCCCCc----ccccCCCHHHHHHHHHHHHHH-HhCCCC-CCeEEEEe---ECCC
Confidence            12223444556677788888777777654322    123 23568899999999998 665321 11111110   1111


Q ss_pred             HhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1137 VLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1137 ~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .+..+.+.   .......   . +...++ ++||||||+++. |.|++||+.||+.+|+.|.
T Consensus       438 ~~p~~~~g---~~~~~~~---~-~~~~~~-~~~l~~aG~~~~-g~~v~gai~sG~~aA~~il  490 (504)
T 1sez_A          438 AFPLYGHN---YDSVLDA---I-DKMEKN-LPGLFYAGNHRG-GLSVGKALSSGCNAADLVI  490 (504)
T ss_dssp             EEECCCTT---HHHHHHH---H-HHHHHH-STTEEECCSSSS-CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCccCcC---HHHHHHH---H-HHHHHh-CCCEEEEeecCC-CCCHHHHHHHHHHHHHHHH
Confidence            00111111   0000000   0 011233 789999999997 7899999999999998875

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.95  E-value=2.6e-27  Score=293.96  Aligned_cols=422  Identities=15%  Similarity=0.126  Sum_probs=257.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCC------CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAG------ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNR  783 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G------~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~  783 (1428)
                      ++||+|||||++||+||++|+++|      ++|+|||+++++||+++|...+|+.+|.|++++.. ...+.++++++|++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   84 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLE   84 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCc
Confidence            589999999999999999999999      99999999999999999999999999999998764 44577899999864


Q ss_pred             ccccceEEecCCceEEEeCCCcEEEecCCHH-HHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH
Q psy10545        784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIK-DLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF  862 (1428)
Q Consensus       784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (1428)
                        ..+  ........+.+.+|....++.+.. .....+..+..   ..+...........+.    +.  +.        
T Consensus        85 --~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~----~~--~~--------  143 (470)
T 3i6d_A           85 --HLL--VNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVS---TGLFSLSGKARAAMDF----IL--PA--------  143 (470)
T ss_dssp             --TTE--EECCCCCEEEECSSCEEECCC------------------------CCSHHHHHHH----HS--CC--------
T ss_pred             --cee--ecCCCCccEEEECCEEEECCCCcccCCcCchHHhhc---cCcCCHHHHHHHhcCc----cc--CC--------
Confidence              222  121122344556666666553210 00000000000   0000000000000000    00  00        


Q ss_pred             hhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHHHHH----------h--------------
Q psy10545        863 ILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTLIHA----------L--------------  917 (1428)
Q Consensus       863 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~~~~----------~--------------  917 (1428)
                           .......++.+|+.+.+..+..+.++.. ....++.++.+.+....+-.+          .              
T Consensus       144 -----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (470)
T 3i6d_A          144 -----SKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQ  218 (470)
T ss_dssp             -----CSSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------------
T ss_pred             -----CCCCCCcCHHHHHHHhcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhcccccccc
Confidence                 0012467899999988877777766653 344556677766542211000          0              


Q ss_pred             ---ccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        918 ---EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       918 ---~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                         ......+++++|++.+++.|++.+.+  ++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+.+ ++
T Consensus       219 ~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~-l~  294 (470)
T 3i6d_A          219 LTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSC-YSLELDNGVTLDADSVIVTAPHKAAAG-ML  294 (470)
T ss_dssp             --------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEECSSS-EEEEESSSCEEEESEEEECSCHHHHHH-HT
T ss_pred             ccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEcCCe-EEEEECCCCEEECCEEEECCCHHHHHH-Hc
Confidence               00124568899999999999887754  799999999999998877 678899998999999999998887765 66


Q ss_pred             CCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCC--cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCC
Q psy10545        995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL--AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSL 1072 (1428)
Q Consensus       995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ 1072 (1428)
                      .+++    ..+.++++.+. ++.++++.+++++.+.  .....+++.+              ...+...+++.+...+..
T Consensus       295 ~~~~----~~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~~~g~l~~~~--------------~~~~~~~~~~~s~~~~~~  355 (470)
T 3i6d_A          295 SELP----AISHLKNMHST-SVANVALGFPEGSVQMEHEGTGFVISRN--------------SDFAITACTWTNKKWPHA  355 (470)
T ss_dssp             TTST----THHHHHTCEEE-EEEEEEEEESSTTCCCSSCSSEEEECST--------------TCCSEEEEEEHHHHCGGG
T ss_pred             CCch----hhHHHhcCCCC-ceEEEEEEECchhcCCCCCCeEEEccCC--------------CCCCceEEEEEcCcCCCc
Confidence            5442    24678888887 6889999999984221  1122222211              011223344444444566


Q ss_pred             CCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCccccccccc
Q psy10545       1073 APTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLL 1152 (1428)
Q Consensus      1073 ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~ 1152 (1428)
                      .|+|+.++.+++..+...   .....+++++.+.++++|++ ++|... ......+.   .|.       .+...+.++.
T Consensus       356 ~p~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-~~g~~~-~p~~~~~~---~w~-------~a~p~~~~g~  420 (470)
T 3i6d_A          356 APEGKTLLRAYVGKAGDE---SIVDLSDNDIINIVLEDLKK-VMNING-EPEMTCVT---RWH-------ESMPQYHVGH  420 (470)
T ss_dssp             SCTTCEEEEEEECCSSCC---GGGTSCHHHHHHHHHHHHGG-GSCCCS-CCSEEEEE---EEE-------EEEEECBTTH
T ss_pred             CCCCCEEEEEEECCCCCc---cccCCCHHHHHHHHHHHHHH-HhCCCC-CceEEEEE---EcC-------CccCCCCCCH
Confidence            788877777766332211   11234568899999999998 776432 22211110   010       1111111111


Q ss_pred             c-cccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1153 T-QSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1153 ~-q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      . .....++....+ .+|||+||+++. |.|++||+.||+.+|+.|.
T Consensus       421 ~~~~~~~~~~l~~~-~~~l~~aG~~~~-g~gv~~a~~sG~~aA~~i~  465 (470)
T 3i6d_A          421 KQRIKELREALASA-YPGVYMTGASFE-GVGIPDCIDQGKAAVSDAL  465 (470)
T ss_dssp             HHHHHHHHHHHHHH-STTEEECSTTTS-CCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCEEEEeecCC-CCCHHHHHHHHHHHHHHHH
Confidence            0 000111212233 689999999986 7789999999999998874

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=288.36  Aligned_cols=424  Identities=15%  Similarity=0.111  Sum_probs=259.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCC--eEEEEccCCCCCCcceEEEe-CCeEEcccccccCC----chHHHHHHHHhccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGI--STIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD----PNSIKLLFDLSKNR  783 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~--~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~----~~~~~~l~~~lG~~  783 (1428)
                      ++||+|||||++||+||++|+++|+  +|+|||+++++||++++... +|+.+|.|++++..    ...+.++++++|++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~   81 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD   81 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence            4699999999999999999999999  99999999999999999876 59999999999864    23467888999853


Q ss_pred             ccccceEEec-CC--ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHH
Q psy10545        784 MENYVNLLPI-KP--FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDM  860 (1428)
Q Consensus       784 l~~~l~~~~~-~~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  860 (1428)
                        +.+..... .+  ...+.+.+|+.+.++.+...+...+..+....   .   ..    ..    ..+.. +.      
T Consensus        82 --~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~---~---~~----~~----~~~~~-~~------  138 (477)
T 3nks_A           82 --SEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPL---F---WA----GL----RELTK-PR------  138 (477)
T ss_dssp             --GGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---CCTTSCSCS---S---HH----HH----TTTTS-CC------
T ss_pred             --ceeeecCCCCchhcceEEEECCEEEECCCChhhcccccchhhhHH---H---HH----HH----Hhhhc-CC------
Confidence              22222111 11  12345566777776654322111100000000   0   00    00    00000 00      


Q ss_pred             HHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH--HHHHh--------------------
Q psy10545        861 LFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT--LIHAL--------------------  917 (1428)
Q Consensus       861 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~--~~~~~--------------------  917 (1428)
                              ......++.+|+.+.+..+....++.. ....++.++.+.+....  .+...                    
T Consensus       139 --------~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~  210 (477)
T 3nks_A          139 --------GKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQ  210 (477)
T ss_dssp             --------CCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----C
T ss_pred             --------CCCCCcCHHHHHHHhhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccC
Confidence                    012367889999988877777666653 34556777777665221  11110                    


Q ss_pred             ----------ccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        918 ----------EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       918 ----------~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                                ....+.++++||++.++++|++.+++.|++|++|++|++|..++++++.|++. |.++.||+||+|+|++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          211 PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPAS  289 (477)
T ss_dssp             CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHH
T ss_pred             CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHH
Confidence                      11235689999999999999999999999999999999999887665677764 5589999999999888


Q ss_pred             HHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCC
Q psy10545        988 NTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067 (1428)
Q Consensus       988 ~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 1067 (1428)
                      .+.+ ++++.  ++...+.+.++.+. ++.++++.+++++.+......+++.+              ...+.+.+.+.+.
T Consensus       290 ~~~~-ll~~~--~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~g~l~~~~--------------~~~~~~~~~~~s~  351 (477)
T 3nks_A          290 VLSE-LLPAE--AAPLARALSAITAV-SVAVVNLQYQGAHLPVQGFGHLVPSS--------------EDPGVLGIVYDSV  351 (477)
T ss_dssp             HHHH-HSCGG--GHHHHHHHHTCCEE-EEEEEEEEETTCCCSSCSSEEECCTT--------------TCSSEEEEECHHH
T ss_pred             HHHH-hcccc--CHHHHHHHhcCCCC-cEEEEEEEECCCCCCCCCceEEccCC--------------CCCCceEEEEecc
Confidence            7765 66542  34566788888887 67899999998842222222222211              0122344445444


Q ss_pred             CCCCCC-CCCccEEEEEEecCCCCC-CCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEe-cCcccHHHHhCCCCCc
Q psy10545       1068 TDLSLA-PTGCSTFYALIPVPNLSN-SSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRI-FTPNDFKDVLGSYLGS 1144 (1428)
Q Consensus      1068 ~d~s~a-p~G~~~l~v~~~~p~~~~-~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~-~tp~~~~~~~~~~~G~ 1144 (1428)
                      ..|... |+|...+.+++....... ....|+.+++++++.++++|++ .++ +........+ ..+.           +
T Consensus       352 ~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g-~~~~~~~~~v~rw~~-----------a  418 (477)
T 3nks_A          352 AFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAAT-QLG-LKEMPSHCLVHLHKN-----------C  418 (477)
T ss_dssp             HCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHH-HHC-CCSCCSEEEEEEEEE-----------E
T ss_pred             ccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHHHHHHH-HhC-CCCCCcEEEEEEcCC-----------c
Confidence            444432 347777777764311100 0001222568899999999998 543 2222221111 0111           1


Q ss_pred             cccccccccc-ccccCCCCCCCCCCceEEecCCccCCCCccccccccccccccccc
Q psy10545       1145 AFSFAPLLTQ-SAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1145 ~~g~~~~~~q-~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      ...+.++... ....+..... ..+|||+||+|. .|.||++|+.||+.+|+.|..
T Consensus       419 ~p~~~~g~~~~~~~~~~~l~~-~~~~l~l~G~~~-~G~gv~~a~~sg~~aA~~il~  472 (477)
T 3nks_A          419 IPQYTLGHWQKLESARQFLTA-HRLPLTLAGASY-EGVAVNDCIESGRQAAVSVLG  472 (477)
T ss_dssp             EECCBTTHHHHHHHHHHHHHH-TTCSEEECSTTT-SCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHh-cCCCEEEEccCC-CCCcHHHHHHHHHHHHHHHHh
Confidence            1111111100 0000000001 136899999997 488999999999999998753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.94  E-value=4e-26  Score=283.35  Aligned_cols=420  Identities=15%  Similarity=0.113  Sum_probs=258.6

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~  785 (1428)
                      |.++||+|||||++||+||++|+++|  ++|+|||+++++||+++|...+|+.+|.|++++.. ...+.++++++|++. 
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~-   80 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGE-   80 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGG-
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcc-
Confidence            34689999999999999999999999  99999999999999999999999999999998764 456788999998642 


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHH----HHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIK----DLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDML  861 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (1428)
                       .  .........+.+.+|+...++.+..    .....+.+......  ..++  ........    . ..+.       
T Consensus        81 -~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~--~~~~--~~~~~~~~----~-~~~~-------  141 (475)
T 3lov_A           81 -K--LVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTE--EEKQ--EVADLLLH----P-SDSL-------  141 (475)
T ss_dssp             -G--EEECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCH--HHHH--HHHHHHHS----C-CTTC-------
T ss_pred             -e--EeecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCCh--hHHH--HhhCcccC----C-cccc-------
Confidence             1  2222222334455666666543210    00000000000000  0000  00000000    0 0000       


Q ss_pred             HhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHH--HHH-----------HHHh---c------
Q psy10545        862 FILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSI--YTL-----------IHAL---E------  918 (1428)
Q Consensus       862 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~--~~~-----------~~~~---~------  918 (1428)
                            .......++.+|+.+.+..+..+.++.. ....++.++.+.+..  +..           ...+   .      
T Consensus       142 ------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  215 (475)
T 3lov_A          142 ------RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLP  215 (475)
T ss_dssp             ------CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC-----
T ss_pred             ------cCCCCCcCHHHHHHHHhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhccccccc
Confidence                  0012367899999988877777776653 345566776665431  110           0000   0      


Q ss_pred             --------cccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHH
Q psy10545        919 --------YEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTY  990 (1428)
Q Consensus       919 --------~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~  990 (1428)
                              .....++++||++.+++.|++.+.+  ++|++|++|++|..++++ +.|++.+| ++.||+||+|+|++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~  291 (475)
T 3lov_A          216 QTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISREDGR-YRLKTDHG-PEYADYVLLTIPHPQVV  291 (475)
T ss_dssp             ---------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEETTE-EEEECTTC-CEEESEEEECSCHHHHH
T ss_pred             ccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeCCE-EEEEECCC-eEECCEEEECCCHHHHH
Confidence                    0234568999999999999988754  799999999999999887 66888899 89999999999888776


Q ss_pred             HHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCc--ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCC
Q psy10545        991 RNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA--HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVT 1068 (1428)
Q Consensus       991 ~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~ 1068 (1428)
                      + ++.++++     +.+.++.+. ++.++++.+++++ +.+  ...++++.+              .......+++.+..
T Consensus       292 ~-ll~~~~~-----~~~~~~~~~-~~~~v~l~~~~~~-~~~~~g~g~l~~~~--------------~~~~~~~~~~~s~~  349 (475)
T 3lov_A          292 Q-LLPDAHL-----PELEQLTTH-STATVTMIFDQQQ-SLPIEGTGFVVNRR--------------APYSITACTAIDQK  349 (475)
T ss_dssp             H-HCTTSCC-----HHHHTCCEE-EEEEEEEEEECCS-SCSSSSSEEEECTT--------------SSCSEEEEEEHHHH
T ss_pred             H-HcCccCH-----HHHhcCCCC-eEEEEEEEECCcC-CCCCCCEEEEecCC--------------CCCceEEEEEEccc
Confidence            6 6665432     567888887 6889999999986 322  112222211              01123344555555


Q ss_pred             CCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCccccc
Q psy10545       1069 DLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSF 1148 (1428)
Q Consensus      1069 d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~ 1148 (1428)
                      .+...|+ ...+.+++..+...   ...+.+++++.+.++++|++ .++.- .......+.   .|..       +...+
T Consensus       350 ~~~~~p~-~~~l~~~~~~~~~~---~~~~~~~e~~~~~~~~~L~~-~~g~~-~~p~~~~v~---~w~~-------a~p~~  413 (475)
T 3lov_A          350 WNHSAPD-HTVLRAFVGRPGND---HLVHESDEVLQQAVLQDLEK-ICGRT-LEPKQVIIS---RLMD-------GLPAY  413 (475)
T ss_dssp             CTTTCTT-EEEEEEEECBTTBC---GGGGSCHHHHHHHHHHHHHH-HHSSC-CCCSEEEEE---EEEE-------EEECC
T ss_pred             CCCCCCC-cEEEEEEeCCCCCC---cccCCCHHHHHHHHHHHHHH-HhCCC-CCCeEEEEE---Eccc-------CCCCC
Confidence            5666776 55566665332211   12234568899999999998 66432 122111110   0110       00111


Q ss_pred             ccccc-cccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1149 APLLT-QSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1149 ~~~~~-q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .++.. .....++...++ ++||||||+++. |.||+||+.||+.+|+.|.
T Consensus       414 ~~g~~~~~~~~~~~l~~~-~~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~  462 (475)
T 3lov_A          414 TVGHADRIQRVREEVLAQ-YPGIYLAGLAYD-GVGLPDCVASAKTMIESIE  462 (475)
T ss_dssp             CTTHHHHHHHHHHHHHHH-STTEEECSTTTS-CSSHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhh-CCCEEEEccCCC-CCCHHHHHHHHHHHHHHHH
Confidence            11100 000011212223 689999999987 6789999999999999885

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.94  E-value=9.2e-26  Score=274.99  Aligned_cols=389  Identities=15%  Similarity=0.179  Sum_probs=261.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-----e----------------CCeEEcccccccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-----Q----------------DGFIFDAGPTVIT  768 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-----~----------------~G~~~d~G~~~i~  768 (1428)
                      .++||+|||||++||+||+.|+++|++|+|+|+++++||+++|++     .                .++.+|.|++++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~   84 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLM   84 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceee
Confidence            358999999999999999999999999999999999999999998     1                4578899999887


Q ss_pred             CchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCH-HHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhh
Q psy10545        769 DPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNI-KDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYL  847 (1428)
Q Consensus       769 ~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  847 (1428)
                      .++.+.++++++|+  .+++++.+.++.+  .+.+|+.+.++.+. +.+...+...+  +...+.+|+..+... ..   
T Consensus        85 ~~~~l~~ll~~lgl--~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~-~~---  154 (433)
T 1d5t_A           85 ANGQLVKMLLYTEV--TRYLDFKVVEGSF--VYKGGKIYKVPSTETEALASNLMGMF--EKRRFRKFLVFVANF-DE---  154 (433)
T ss_dssp             TTSHHHHHHHHHTG--GGGCCEEECCEEE--EEETTEEEECCCSHHHHHHCSSSCHH--HHHHHHHHHHHHHHC-CT---
T ss_pred             ccchHHHHHHHcCC--ccceEEEEeCceE--EeeCCEEEECCCCHHHHhhCcccChh--hHHHHHHHHHHHHhh-cc---
Confidence            77778899999994  4557777766433  46688888888874 33333222221  334555555544431 10   


Q ss_pred             hhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhH---HHHHHHHhcc--cc
Q psy10545        848 SFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSS---IYTLIHALEY--EW  921 (1428)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~---~~~~~~~~~~--~~  921 (1428)
                         ..+.. .        ...+ ....++.+|+++++.++.++.++... ..+.+..+.+.++   +..+..+...  ..
T Consensus       155 ---~~p~~-~--------~~~~-~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~  221 (433)
T 1d5t_A          155 ---NDPKT-F--------EGVD-PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY  221 (433)
T ss_dssp             ---TCGGG-G--------TTCC-TTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSS
T ss_pred             ---cCchh-c--------cccc-cccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhc
Confidence               00100 0        0001 13689999999999999999987654 3444444443332   2333333321  12


Q ss_pred             c---eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCC
Q psy10545        922 G---IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYA  998 (1428)
Q Consensus       922 g---~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~  998 (1428)
                      |   .++++||++.++++|++.+++.|++|++|++|++|..+++++++|++ +|+++.||+||+|++++..   .+    
T Consensus       222 g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~VV~a~~~~~~---~~----  293 (433)
T 1d5t_A          222 GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCKQLICDPSYVPD---RV----  293 (433)
T ss_dssp             SCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECSEEEECGGGCGG---GE----
T ss_pred             CCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECCEEEECCCCCcc---cc----
Confidence            2   66999999999999999999999999999999999999999887775 7889999999999977631   11    


Q ss_pred             CChhHHHHHhhcCCCCceEEEEEeecCCcCCC---cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCC
Q psy10545        999 FGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL---AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPT 1075 (1428)
Q Consensus       999 ~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~ 1075 (1428)
                               .++....+.+.   .+++++|..   .+++++++.            +.++.++.++++.+| .||+++|+
T Consensus       294 ---------~~~~~~~~~~~---il~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~v~~~s-~d~~~aP~  348 (433)
T 1d5t_A          294 ---------RKAGQVIRIIC---ILSHPIKNTNDANSCQIIIPQ------------NQVNRKSDIYVCMIS-YAHNVAAQ  348 (433)
T ss_dssp             ---------EEEEEEEEEEE---EESSCCTTSTTCSSEEEEECG------------GGTTCSSCEEEEEEE-GGGTSSCT
T ss_pred             ---------cccCcceeEEE---EEcCcccccCCCceEEEEeCc------------cccCCCCCEEEEEEC-CCCcccCC
Confidence                     11111222222   278777654   567777742            235678899999999 89999999


Q ss_pred             CccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccc
Q psy10545       1076 GCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQS 1155 (1428)
Q Consensus      1076 G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~ 1155 (1428)
                      |++++++++++|...        ..    +++...++. +.|.....+...+..                          
T Consensus       349 G~~~~~~~~~~p~~~--------~~----~~l~~~~~~-l~~~~~~~~~~~~~~--------------------------  389 (433)
T 1d5t_A          349 GKYIAIASTTVETTD--------PE----KEVEPALGL-LEPIDQKFVAISDLY--------------------------  389 (433)
T ss_dssp             TCEEEEEEEECCSSC--------HH----HHTHHHHTT-TCSCSEEEEEEEEEE--------------------------
T ss_pred             CCEEEEEEEecCCCC--------HH----HHHHHHHHH-hhhHHhheeccceee--------------------------
Confidence            999999999886432        11    233344554 445433211111111                          


Q ss_pred             cccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1156 AWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1156 ~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                         .|.... .-+|+|+++++-. +...++++..++.....|.
T Consensus       390 ---~~~~~~-~~~~~~~~~~~d~-~~~~e~~~~~~~~~~~~~~  427 (433)
T 1d5t_A          390 ---EPIDDG-SESQVFCSCSYDA-TTHFETTCNDIKDIYKRMA  427 (433)
T ss_dssp             ---EESCCS-TTTCEEECCCCCS-CSBSHHHHHHHHHHHHHHH
T ss_pred             ---eecCCC-CCCCEEECCCCCc-cccHHHHHHHHHHHHHHHh
Confidence               111111 1489999997754 3346888887777666553

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.93  E-value=3.2e-26  Score=286.56  Aligned_cols=276  Identities=19%  Similarity=0.199  Sum_probs=172.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCC-CeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC--chHHHHHHHHhcccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD--PNSIKLLFDLSKNRM  784 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G-~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~--~~~~~~l~~~lG~~l  784 (1428)
                      +.++||||||||++||+||+.|+++| ++|+|||+++++|||+.|.+. +|+.+|.|+++++.  .+.+..++.++|...
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~   85 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLND   85 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCC
Confidence            45689999999999999999999999 999999999999999999987 79999999999874  344555666666421


Q ss_pred             cccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh
Q psy10545        785 ENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL  864 (1428)
Q Consensus       785 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  864 (1428)
                      ..          ....+.++..+.++.+...       ........+..+.+.+.......+.....             
T Consensus        86 ~~----------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  135 (516)
T 1rsg_A           86 GR----------TRFVFDDDNFIYIDEERGR-------VDHDKELLLEIVDNEMSKFAELEFHQHLG-------------  135 (516)
T ss_dssp             CC----------CCEECCCCCCEEEETTTEE-------CTTCTTTCHHHHHHHHHHHHHHHC------------------
T ss_pred             cc----------eeEEECCCCEEEEcCCCcc-------ccccHHHHHHHHHHHHHHHHHHHhhhccC-------------
Confidence            10          0112223332222221000       00000111122222222222111100000             


Q ss_pred             HHHHhhcccCCHHHHHHhhcC------CH----HHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHH
Q psy10545        865 PKLIKIKAWKSVYSIVSQFIK------ND----YLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALI  934 (1428)
Q Consensus       865 ~~~~~~~~~~s~~~~l~~~~~------~~----~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~  934 (1428)
                            ..+.++.+++.+++.      .+    .+..++.......|..+...++.+.+.   ...+...+++| ++.++
T Consensus       136 ------~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~---~~~~~~~~~~g-~~~l~  205 (516)
T 1rsg_A          136 ------VSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYF---GHQGRNAFALN-YDSVV  205 (516)
T ss_dssp             --------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCC---CCSSCCEEESC-HHHHH
T ss_pred             ------CCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHCChHHHHh---hccCcchhhhC-HHHHH
Confidence                  113455555443221      11    112233222233455666666543221   12223456677 99999


Q ss_pred             HHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH----------hcCCCCCChhHH
Q psy10545        935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN----------LLGQYAFGKKKY 1004 (1428)
Q Consensus       935 ~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~----------Ll~~~~~p~~~~ 1004 (1428)
                      +.|++.+.+  ++|++|++|++|..+++..+.|++.+|+++.||+||+|+|+..+...          +.-.+++|..+.
T Consensus       206 ~~l~~~l~~--~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~  283 (516)
T 1rsg_A          206 QRIAQSFPQ--NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ  283 (516)
T ss_dssp             HHHHTTSCG--GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHH
T ss_pred             HHHHHhCCC--CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHH
Confidence            999887753  67999999999998744347889999989999999999988876532          112356889999


Q ss_pred             HHHhhcCCCCceEEEEEeecCCc
Q psy10545       1005 MNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus      1005 ~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
                      ++++++.++ +..||++.|+++|
T Consensus       284 ~ai~~~~~~-~~~Kv~l~f~~~f  305 (516)
T 1rsg_A          284 DAFDKIHFG-ALGKVIFEFEECC  305 (516)
T ss_dssp             HHTTSSCCC-CCEEEEEEESSCC
T ss_pred             HHHHhCCCC-cceEEEEEeCCCC
Confidence            999999998 6789999999994

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.92  E-value=8.4e-26  Score=283.65  Aligned_cols=436  Identities=12%  Similarity=0.054  Sum_probs=245.6

Q ss_pred             ccccceeeecCCCcchHHHHHHHHh-CCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhcccc
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQT-AGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRM  784 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~-~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l  784 (1428)
                      +..++||||||||++||+||++|++ .|++|+|||+++++||+++|.. .+|+.+|.|+|++.. ...+.+++++++...
T Consensus         7 p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~   86 (513)
T 4gde_A            7 PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKE   86 (513)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSG
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCcc
Confidence            3456899999999999999999998 5999999999999999999964 589999999999975 456678888876432


Q ss_pred             cccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHH-HHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        785 ENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYS-KKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       785 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                      .   .+...+.... .+.+|+.+.++....     +....   ........... ......                   
T Consensus        87 ~---~~~~~~~~~~-i~~~g~~~~~p~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~-------------------  135 (513)
T 4gde_A           87 D---DWYTHQRISY-VRCQGQWVPYPFQNN-----ISMLP---KEEQVKCIDGMIDAALEA-------------------  135 (513)
T ss_dssp             G---GEEEEECCEE-EEETTEEEESSGGGG-----GGGSC---HHHHHHHHHHHHHHHHHH-------------------
T ss_pred             c---eeEEecCceE-EEECCeEeecchhhh-----hhhcc---hhhHHHHHHHHHHHHHhh-------------------
Confidence            2   2333333333 344677777653210     11111   00000111000 000000                   


Q ss_pred             hHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhH---------------HHHHHHHh-cc-----cc
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSS---------------IYTLIHAL-EY-----EW  921 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~---------------~~~~~~~~-~~-----~~  921 (1428)
                         ........++.+|+.+.+.....+.++.. ....++.++.+.+.               ....+... ..     ..
T Consensus       136 ---~~~~~~~~s~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (513)
T 4gde_A          136 ---RVANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNAT  212 (513)
T ss_dssp             ---HTCCSCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBE
T ss_pred             ---hcccccccCHHHHHHHhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccc
Confidence               00011245666776666555544444432 22333444333221               11111100 00     01


Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
                      ..+.++||++.++++|++.+++.|++|++|++|++|..++++   |++.+|+++.||+||+|+|+..+.. ++.+    .
T Consensus       213 ~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~---v~~~~G~~~~ad~vI~t~P~~~l~~-~l~~----~  284 (513)
T 4gde_A          213 FRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAVDFLAE-AMND----Q  284 (513)
T ss_dssp             EEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE---EEETTSCEEEEEEEEECSCHHHHHH-HTTC----H
T ss_pred             eeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE---EEEcCCCEEECCEEEECCCHHHHHH-hcCc----h
Confidence            123458999999999999999999999999999999988775   5678999999999999999888876 5543    2


Q ss_pred             hHHHHHhhcCCCCceEEEEEeecCCcC-C-CcceEEEcCCChHHHHHHH-----hcCCCCC--CCceEEEEeCCCCCCCC
Q psy10545       1002 KKYMNLIKKKMSNSLFVIYFGLSEQYT-H-LAHHTIFFPSNYKKSIENI-----FGKNFSR--DNLSIYLHSPSVTDLSL 1072 (1428)
Q Consensus      1002 ~~~~~l~~~~~~~s~~~v~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~v~~~s~~d~s~ 1072 (1428)
                      ........+.|. ++..|+++++...+ . .+.++++++++ +..+..+     |.....|  ......+.+.+...+..
T Consensus       285 ~~~~~~~~l~y~-~~~~v~l~~~~~~~~~~~~~~~~y~~~~-~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~  362 (513)
T 4gde_A          285 ELVGLTKQLFYS-STHVIGVGVRGSRPERIGDKCWLYFPED-NCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQS  362 (513)
T ss_dssp             HHHHHHTTCCEE-EEEEEEEEEESSCCTTTTTCCEEECCST-TCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSC
T ss_pred             hhHhhhhcccCC-ceEEEEEEEeccccccccccceeeccCC-CCceeEEEecCCCCcccCCCCCceEEEEEeccCCCccc
Confidence            344566778877 67888999987743 2 23345555321 1000000     0000001  11112233333344444


Q ss_pred             CCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEec-CcccHHHHhCCCCCcccccccc
Q psy10545       1073 APTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIF-TPNDFKDVLGSYLGSAFSFAPL 1151 (1428)
Q Consensus      1073 ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~-tp~~~~~~~~~~~G~~~g~~~~ 1151 (1428)
                      .+.+...+..+......   ...|..+++++++.++++|.++....-.+.++...+. .|..+    +.+.   .+....
T Consensus       363 ~~~~~~~~~~~~~~~~~---~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ay----P~y~---~~~~~~  432 (513)
T 4gde_A          363 TEAKEGPYWSIMLEVSE---SSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGY----PTPT---LEREGT  432 (513)
T ss_dssp             CSEECCCEEEEEEEEEE---BTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEE----ECCB---TTHHHH
T ss_pred             ccCCcceEEEEEecccc---hhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCee----cccC---HhHHHH
Confidence            44333333332211111   1235556788999999999983222223334433321 11110    0000   000000


Q ss_pred             cccccccCCCCCCCCCCceEEecCCccC---CCCccccccccccccccccccchh
Q psy10545       1152 LTQSAWFRPHNRDKNLTNLYFVGAGTHP---GAANKIIKAGSKSFSSAIKLFDPV 1203 (1428)
Q Consensus      1152 ~~q~~~~rp~~~t~~i~~Ly~aGd~t~p---g~gv~GA~~sg~~~a~~i~~l~~~ 1203 (1428)
                      ..   ..++...   -+|||++|.....   ...|++|+++|..+|+.|..--.+
T Consensus       433 ~~---~~~~~l~---~~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~g~~e  481 (513)
T 4gde_A          433 LT---QILPKLQ---DKDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNGAVE  481 (513)
T ss_dssp             HH---HHHHHHH---HTTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HH---HHHHHHh---hcCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHcCCCc
Confidence            00   1111111   2699999955422   236899999999999998754333

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.92  E-value=5.8e-25  Score=272.27  Aligned_cols=420  Identities=15%  Similarity=0.169  Sum_probs=241.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC-----chHHHHHHHH-hcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-----PNSIKLLFDL-SKN  782 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-----~~~~~~l~~~-lG~  782 (1428)
                      .++||+|||||++||++|+.|++.|+ +|+|+|+++++||++.+....|+.+|.|++++.+     .+.+.+++++ +|+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl   82 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL   82 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence            35799999999999999999999999 8999999999999999999999999999999872     2456778888 775


Q ss_pred             cccccceEEecCCc-eEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHH
Q psy10545        783 RMENYVNLLPIKPF-YRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDML  861 (1428)
Q Consensus       783 ~l~~~l~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (1428)
                      ...    ....+.. ...+..+|+.+..    ......+.            +..............+....        
T Consensus        83 ~~~----~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--------  134 (472)
T 1b37_A           83 RNF----RSDFDYLAQNVYKEDGGVYDE----DYVQKRIE------------LADSVEEMGEKLSATLHASG--------  134 (472)
T ss_dssp             CEE----ECCCTTGGGCEECSSSSBCCH----HHHHHHHH------------HHHHHHHHHHHHHHTSCTTC--------
T ss_pred             cee----eccCccccceeEcCCCCCCCH----HHHHHHHH------------HHHHHHHHHHHHHHhhcccc--------
Confidence            321    1111111 1123334543221    11100000            00111111110000000000        


Q ss_pred             HhhHHHHhhcccCCHH--HHHHhhcC---CHHHHHHHHhhc--ccccCCCCchhHH--HHHHHHhccccceee--ecCch
Q psy10545        862 FILPKLIKIKAWKSVY--SIVSQFIK---NDYLKQAFSFNS--LFIGGNPFSTSSI--YTLIHALEYEWGIWF--PKGGV  930 (1428)
Q Consensus       862 ~~~~~~~~~~~~~s~~--~~l~~~~~---~~~l~~~l~~~~--~~~g~~p~~~s~~--~~~~~~~~~~~g~~~--~~gG~  930 (1428)
                               ....++.  .++.+...   ...++.++....  ..++.++...+..  .....+.....+.++  ++||+
T Consensus       135 ---------~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~  205 (472)
T 1b37_A          135 ---------RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGY  205 (472)
T ss_dssp             ---------TTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCT
T ss_pred             ---------chhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhccccccccccCCceeeeecCCcH
Confidence                     0122222  12322221   111122222111  1112222222210  000011111122333  37999


Q ss_pred             HHHHHHHHHHHHHc--------CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC-CCCCCh
Q psy10545        931 GALIKALIKLFQNL--------GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG-QYAFGK 1001 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~--------G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~-~~~~p~ 1001 (1428)
                      +.++++|++.+.+.        |++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+...++. .+.+|.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~  284 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG-VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPT  284 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC-EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc-EEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCH
Confidence            99999999988765        6899999999999998887 4488999999999999999998877653332 467888


Q ss_pred             hHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEE
Q psy10545       1002 KKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTF 1080 (1428)
Q Consensus      1002 ~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l 1080 (1428)
                      .+.++++++.++ +..+|++.+++++ +..+...+++..+..        .+    ...++...    +++ .| +..++
T Consensus       285 ~~~~ai~~~~~~-~~~kv~l~~~~~~w~~~~~~~~~~~~~~~--------~~----~~~~~~~~----~~~-~p-~~~~l  345 (472)
T 1b37_A          285 WKVRAIYQFDMA-VYTKIFLKFPRKFWPEGKGREFFLYASSR--------RG----YYGVWQEF----EKQ-YP-DANVL  345 (472)
T ss_dssp             HHHHHHHHSEEE-CEEEEEEECSSCCSCCSTTCSEEEECCSS--------TT----SSCEEEEC----TTT-ST-TCCEE
T ss_pred             HHHHHHHhcCCc-ceeEEEEECCCcCCCCCCCcceEEecccC--------Cc----cceeeecc----cCC-CC-CCCEE
Confidence            888999999887 6789999999984 321112122211100        00    11233221    222 23 45666


Q ss_pred             EEEEecCCCCCCCCCcHH-HHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545       1081 YALIPVPNLSNSSINWSE-ESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus      1081 ~v~~~~p~~~~~~~~~~~-~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
                      ++++..+..    ..|.. +++++.+.++++|++ ++|+.. ...+...+.+   |... ....|+.....++...  ..
T Consensus       346 ~~~~~~~~a----~~~~~~~~~e~~~~~l~~L~~-~~Pg~~~~~~~~~~~~~---W~~~-~~~~G~~~~~~~g~~~--~~  414 (472)
T 1b37_A          346 LVTVTDEES----RRIEQQSDEQTKAEIMQVLRK-MFPGKDVPDATDILVPR---WWSD-RFYKGTFSNWPVGVNR--YE  414 (472)
T ss_dssp             EEEEEHHHH----HHHHTSCHHHHHHHHHHHHHH-HCTTSCCCCCSEEECCC---TTTC-TTTSSSEEECBTTCCH--HH
T ss_pred             EEEechHHH----HHHHhCCHHHHHHHHHHHHHH-HcCCCCCCCCceEEecc---cCCC-CCCCcccCCCCCCCCh--hH
Confidence            666543110    12332 468899999999998 888853 2222222322   3221 2224443322222211  12


Q ss_pred             CCCCCCCCCCceEEecCCccC--CCCcccccccccccccccc
Q psy10545       1159 RPHNRDKNLTNLYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1159 rp~~~t~~i~~Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ++..++| ++||||||++|++  +++|+||+.||..+|..|.
T Consensus       415 ~~~l~~p-~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~  455 (472)
T 1b37_A          415 YDQLRAP-VGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI  455 (472)
T ss_dssp             HHHHHCC-BTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcc-CCcEEEeecccCCCCCCchhHHHHHHHHHHHHHH
Confidence            3445566 8999999999987  4589999999999999885

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.92  E-value=1.6e-24  Score=269.83  Aligned_cols=415  Identities=13%  Similarity=0.104  Sum_probs=242.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-----------------CCeEEcccccccCCchH
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-----------------DGFIFDAGPTVITDPNS  772 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-----------------~G~~~d~G~~~i~~~~~  772 (1428)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||++.+.+.                 .|..+|.|++++.....
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   89 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSHI   89 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHHH
Confidence            4679999999999999999999999999999999999999999875                 57889999988865446


Q ss_pred             HHHHHHHhcccccccceEEecCCceEEE-eCC----CcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhh
Q psy10545        773 IKLLFDLSKNRMENYVNLLPIKPFYRLY-WGK----EKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYL  847 (1428)
Q Consensus       773 ~~~l~~~lG~~l~~~l~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  847 (1428)
                      +.++++++|++...   +........+. ..+    |..+.++.....                  ++.....+......
T Consensus        90 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~l~~~~~~  148 (489)
T 2jae_A           90 TLDYCRELGVEIQG---FGNQNANTFVNYQSDTSLSGQSVTYRAAKAD------------------TFGYMSELLKKATD  148 (489)
T ss_dssp             HHHHHHHHTCCEEE---ECCCCTTSEEECCCSSTTTTCCEEHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCceEE---ccccCCCceEEecCCcccCCccccHHHHhhh------------------hhccHHHHHHHHHh
Confidence            78899999964321   11111111222 222    444443211111                  11101111110000


Q ss_pred             -hhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcC--------CHHHHHHHHhhc--ccccC--CCCchhHHHH--
Q psy10545        848 -SFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIK--------NDYLKQAFSFNS--LFIGG--NPFSTSSIYT--  912 (1428)
Q Consensus       848 -~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~--------~~~l~~~l~~~~--~~~g~--~p~~~s~~~~--  912 (1428)
                       .....+...              ....++.+|+.++..        ....+..+....  ...+.  ++.+......  
T Consensus       149 ~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (489)
T 2jae_A          149 QGALDQVLSR--------------EDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSG  214 (489)
T ss_dssp             HTTTTTTSCH--------------HHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHT
T ss_pred             ccccccccch--------------hhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhh
Confidence             000011000              012234444443100        000000000000  00010  1222222211  


Q ss_pred             HHHHh------ccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC---cEEEcCEEEEc
Q psy10545        913 LIHAL------EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADIIVSN  983 (1428)
Q Consensus       913 ~~~~~------~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G---~~i~ad~VV~A  983 (1428)
                      +..++      ....+.++++||++.|+++|++.+.+  ++|++|++|++|..++++ +.|++.+|   +++.||+||+|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~~~~ad~vI~a  291 (489)
T 2jae_A          215 IGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEG-VTVEYTAGGSKKSITADYAICT  291 (489)
T ss_dssp             TTTTGGGGGCTTTSSSEEEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEETTE-EEEEEEETTEEEEEEESEEEEC
T ss_pred             HHHHHhhhhccccCccEEeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcCCe-EEEEEecCCeEEEEECCEEEEC
Confidence            11111      11235678999999999999998753  789999999999999887 44777776   68999999999


Q ss_pred             CCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCC-cce-EEEcCCChHHHHHHHhcCCCCCCCceE
Q psy10545        984 ADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THL-AHH-TIFFPSNYKKSIENIFGKNFSRDNLSI 1060 (1428)
Q Consensus       984 ~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1428)
                      +|+..+. .+..  .+|+.+.+.++++.|+ +..+|++.+++++ +.. ... .+.                 .++.+..
T Consensus       292 ~p~~~l~-~l~~--~l~~~~~~~l~~~~~~-~~~kv~l~~~~~~w~~~~~~~g~~~-----------------~~~~~~~  350 (489)
T 2jae_A          292 IPPHLVG-RLQN--NLPGDVLTALKAAKPS-SSGKLGIEYSRRWWETEDRIYGGAS-----------------NTDKDIS  350 (489)
T ss_dssp             SCHHHHT-TSEE--CCCHHHHHHHHTEECC-CEEEEEEEESSCHHHHTTCCCSCEE-----------------EESSTTC
T ss_pred             CCHHHHH-hCcc--CCCHHHHHHHHhCCCc-cceEEEEEeCCCCccCCCCcccccc-----------------cCCCCce
Confidence            9887554 3544  5778888899999998 6899999999883 211 000 000                 1123455


Q ss_pred             EEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHH-HHHHHHHHHHHHHHhccCCC-ccCceEEEEecCcccHHHHh
Q psy10545       1061 YLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSE-ESIKLKNIVFMYLEQYCIPN-LRKKLITQRIFTPNDFKDVL 1138 (1428)
Q Consensus      1061 ~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~-~~ee~~~~vl~~L~~~~~P~-l~~~i~~~~~~tp~~~~~~~ 1138 (1428)
                      ++.+++..++  .|+ ...+..++..+..    ..|.. +++++.+.+++.|++ ++|. +.+.+....   +.+|.+..
T Consensus       351 ~~~~~s~~~~--~~~-~~l~~~~~~g~~~----~~~~~~~~~~~~~~~l~~L~~-~~~~~~~~~~~~~~---~~~W~~~~  419 (489)
T 2jae_A          351 QIMFPYDHYN--SDR-GVVVAYYSSGKRQ----EAFESLTHRQRLAKAIAEGSE-IHGEKYTRDISSSF---SGSWRRTK  419 (489)
T ss_dssp             EEECCSSSTT--SSC-EEEEEEEEETHHH----HHHHTSCHHHHHHHHHHHHHH-HHCGGGGSSEEEEE---EEEGGGST
T ss_pred             EEEeCCCCCC--CCC-CEEEEEeeCCchh----hhhhcCCHHHHHHHHHHHHHH-HcCcchhhhccccE---EEEcCCCC
Confidence            6666665432  232 2222234432211    12432 468899999999998 8887 666555432   33455543


Q ss_pred             CCCCCcccccc------cccccccccCCCCCCCCCCceEEecCCcc-CCCCcccccccccccccccc
Q psy10545       1139 GSYLGSAFSFA------PLLTQSAWFRPHNRDKNLTNLYFVGAGTH-PGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1139 ~~~~G~~~g~~------~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~-pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      + ..|+...+.      ++..  ...++..++| ++||||||+++. ++++++||+.||..+|..|.
T Consensus       420 ~-~~G~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~  482 (489)
T 2jae_A          420 Y-SESAWANWAGSGGSHGGAA--TPEYEKLLEP-VDKIYFAGDHLSNAIAWQHGALTSARDVVTHIH  482 (489)
T ss_dssp             T-TSCSSCEETTC-------C--CHHHHHHTSC-BTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHH
T ss_pred             C-CCCcchhcccccCCCcccc--hhhHHHHhCC-CCcEEEeEHHhccCccHHHHHHHHHHHHHHHHH
Confidence            2 344432222      2211  1122334455 899999999984 67799999999999998874

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.90  E-value=1.2e-23  Score=262.59  Aligned_cols=427  Identities=16%  Similarity=0.114  Sum_probs=244.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE--eCCeEEcccccccCC-chHHHHHHHHhcccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK--QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMEN  786 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~--~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~  786 (1428)
                      .++||+|||||++||+||+.|++.|++|+|||+++++||++.+..  ..|+.+|.|++++.. ...+.++++++|+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  111 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNE  111 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCcee
Confidence            367999999999999999999999999999999999999999988  568999999998865 45778899999965321


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHh----hCcccH-HHHHHHHH-HHHHHHHHhhhhhcccCcccHHHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAK----FNLNDI-KGYRLFLN-YSKKVFKEGYLSFASKSFLTINDM  860 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~----~~p~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  860 (1428)
                         +...+... +...+|.......    .......    +.+... .....++. ........    +...   ..   
T Consensus       112 ---~~~~~~~~-~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~---  173 (498)
T 2iid_A          112 ---FSQENDNA-WYFIKNIRKKVGE----VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEE----LKRT---NC---  173 (498)
T ss_dssp             ---ECSCCTTS-EEEETTEEEEHHH----HHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHH----HHHS---CH---
T ss_pred             ---ecccCCcc-EEEeCCeeecccc----cccCccccccCCCccccCCCHHHHHHHHHHHHHHH----Hhhc---cH---
Confidence               11111111 1122333222110    0000000    001000 00111111 11111000    0000   00   


Q ss_pred             HHhhHHHHhhcccCCHHHHHHhhcC-CHHHHHHHH-hhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHH
Q psy10545        861 LFILPKLIKIKAWKSVYSIVSQFIK-NDYLKQAFS-FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALI  938 (1428)
Q Consensus       861 ~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~l~-~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~  938 (1428)
                          .......+..++.+|+.+... +......+. ...............+... .......+.++++||++.|+++|+
T Consensus       174 ----~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~l~  248 (498)
T 2iid_A          174 ----SYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHD-DIFAYEKRFDEIVDGMDKLPTAMY  248 (498)
T ss_dssp             ----HHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHH-HHHTTCCCEEEETTCTTHHHHHHH
T ss_pred             ----HHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcccchhHHHHHHHHHH-hccccCcceEEeCCcHHHHHHHHH
Confidence                011111135778888877542 333333322 1111000000001111111 112223356789999999999999


Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc----EEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCC
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ----IFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~----~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~ 1014 (1428)
                      +.+.+   +|++|++|++|..++++ +.|++.+|+    ++.||+||+|+|+..+. .+.-.+.+|+.+.++++++.++ 
T Consensus       249 ~~l~~---~i~~~~~V~~I~~~~~~-v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~-~i~f~p~Lp~~~~~ai~~l~~~-  322 (498)
T 2iid_A          249 RDIQD---KVHFNAQVIKIQQNDQK-VTVVYETLSKETPSVTADYVIVCTTSRAVR-LIKFNPPLLPKKAHALRSVHYR-  322 (498)
T ss_dssp             HHTGG---GEESSCEEEEEEECSSC-EEEEEECSSSCCCEEEESEEEECSCHHHHT-TSEEESCCCHHHHHHHHHCCEE-
T ss_pred             Hhccc---ccccCCEEEEEEECCCe-EEEEEecCCcccceEEeCEEEECCChHHHh-heecCCCCCHHHHHHHHhCCCc-
Confidence            88764   79999999999998877 567776664    58999999999887543 3444456899988999999998 


Q ss_pred             ceEEEEEeecCCc-CCCcc-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCC
Q psy10545       1015 SLFVIYFGLSEQY-THLAH-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNS 1092 (1428)
Q Consensus      1015 s~~~v~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~ 1092 (1428)
                      +..+|++.|++++ +.... ....                 ..+.+..++++++.    ..|+|..++..++..+..   
T Consensus       323 ~~~kv~l~~~~~~w~~~~~~~~~~-----------------~~~~~~~~~~~~s~----~~p~g~~~L~~~~~g~~a---  378 (498)
T 2iid_A          323 SGTKIFLTCTTKFWEDDGIHGGKS-----------------TTDLPSRFIYYPNH----NFTNGVGVIIAYGIGDDA---  378 (498)
T ss_dssp             CEEEEEEEESSCGGGGGTCCSSEE-----------------EESSTTCEEECCSS----CCTTSCEEEEEEEEHHHH---
T ss_pred             ceeEEEEEeCCCCccCCCccCCcc-----------------cCCCCcceEEECCC----CCCCCCcEEEEEeCCccH---
Confidence            5789999999984 22100 0000                 11223345555542    246676777665543211   


Q ss_pred             CCCcH-HHHHHHHHHHHHHHHhccCCCccCc----eEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCC
Q psy10545       1093 SINWS-EESIKLKNIVFMYLEQYCIPNLRKK----LITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNL 1167 (1428)
Q Consensus      1093 ~~~~~-~~~ee~~~~vl~~L~~~~~P~l~~~----i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i 1167 (1428)
                       ..|. .+++++.+.++++|++ +++.-.+.    .....   -..|... ....|+.....++..  ..+++....| +
T Consensus       379 -~~~~~~~~~~~~~~~l~~L~~-~~g~~~~~~~~~~~~~~---~~~W~~~-p~~~G~~~~~~~~~~--~~~~~~l~~p-~  449 (498)
T 2iid_A          379 -NFFQALDFKDCADIVFNDLSL-IHQLPKKDIQSFCYPSV---IQKWSLD-KYAMGGITTFTPYQF--QHFSDPLTAS-Q  449 (498)
T ss_dssp             -HTTTTSCHHHHHHHHHHHHHH-HHTCCHHHHHHHEEEEE---EEEGGGC-TTTCSSEECCCTTHH--HHHHHHHHCC-B
T ss_pred             -hhhhcCCHHHHHHHHHHHHHH-HcCCChhhhhhhcCccE---EEecCCC-CCCCceeeecCCcch--HHHHHHHhCC-C
Confidence             1232 2457788999999998 55411111    11111   1233332 123344322222211  1122233444 7


Q ss_pred             CceEEecCCccC-CCCcccccccccccccccc
Q psy10545       1168 TNLYFVGAGTHP-GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1168 ~~Ly~aGd~t~p-g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      +||||||++|.. .++|+||+.||..+|..|.
T Consensus       450 ~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~  481 (498)
T 2iid_A          450 GRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN  481 (498)
T ss_dssp             TTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcccccCCcCHHHHHHHHHHHHHHHH
Confidence            899999999954 3479999999999998874

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.90  E-value=1.1e-23  Score=259.92  Aligned_cols=407  Identities=15%  Similarity=0.124  Sum_probs=252.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC-CeEEEEccCCCCCCcceEE-EeCCeEEcccccccCC-chHHHHHHHHhcccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKPGGRAYVY-KQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMEN  786 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G-~~V~VlEa~~~~GGr~~s~-~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~  786 (1428)
                      .++||+|||||++||+||++|+++| .+|+|+|+++++||++++. ..+|+.+|.|++++.. ...+.+++++++.    
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~~----   83 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAVQ----   83 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHCS----
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHhh----
Confidence            4689999999999999999999998 7999999999999999996 6789999999998865 4556777777641    


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                        ++.+..... ..+.+|+.+.+|.+..     +..+ +.. ... ..   ...+...  .  ...              
T Consensus        84 --~~~~~~~~~-~~~~~g~~~~~P~~~~-----~~~l-~~~-~~~-~~---~~~ll~~--~--~~~--------------  131 (484)
T 4dsg_A           84 --GWNVLQRES-WVWVRGRWVPYPFQNN-----IHRL-PEQ-DRK-RC---LDELVRS--H--ART--------------  131 (484)
T ss_dssp             --CEEEEECCC-EEEETTEEEESSGGGC-----GGGS-CHH-HHH-HH---HHHHHHH--H--HCC--------------
T ss_pred             --hhhhccCce-EEEECCEEEEeCccch-----hhhC-CHH-HHH-HH---HHHHHHH--H--hcc--------------
Confidence              122222222 3344677777762110     1111 111 000 00   0011100  0  000              


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhH-----------HHHHHH-Hhcc-------ccc-eee
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSS-----------IYTLIH-ALEY-------EWG-IWF  925 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~-----------~~~~~~-~~~~-------~~g-~~~  925 (1428)
                        ......++.+|+.+.+..+..+.++.. ....++.++.+.++           +..++. .+..       ..+ ..+
T Consensus       132 --~~~~~~s~~e~~~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~y  209 (484)
T 4dsg_A          132 --YTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRF  209 (484)
T ss_dssp             --CSSCCSSHHHHHHHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEE
T ss_pred             --CCCCCCCHHHHHHHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEe
Confidence              011356778888776554444333331 22344555544332           111111 1111       012 234


Q ss_pred             e-cCchHHHHHHHHHHHHHcCcEEEeC--ceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC--CCCC
Q psy10545        926 P-KGGVGALIKALIKLFQNLGGNLILN--SQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ--YAFG 1000 (1428)
Q Consensus       926 ~-~gG~~~l~~~L~~~l~~~G~~V~~~--~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~--~~~p 1000 (1428)
                      | +||++.++++|++.+.+  .+|+++  ++|++|..++++   |++.+|+++.||+||+|+|++.+.. ++.+  +.+|
T Consensus       210 p~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~~~~---v~~~~G~~~~ad~VI~a~p~~~~~~-ll~~~~~~~~  283 (484)
T 4dsg_A          210 PQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDADAKT---ITFSNGEVVSYDYLISTVPFDNLLR-MTKGTGFKGY  283 (484)
T ss_dssp             ESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETTTTE---EEETTSCEEECSEEEECSCHHHHHH-HEECSSCTTG
T ss_pred             ecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEecCCE---EEECCCCEEECCEEEECCCHHHHHH-HhhccCCCCC
Confidence            5 48999999999998854  289999  569999987775   4568898999999999999988876 5543  3356


Q ss_pred             hhHHHHHhhcCCCCceEEEEEeecCCcC-C-CcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCcc
Q psy10545       1001 KKKYMNLIKKKMSNSLFVIYFGLSEQYT-H-LAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCS 1078 (1428)
Q Consensus      1001 ~~~~~~l~~~~~~~s~~~v~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~ 1078 (1428)
                      +...+.+.++.|. ++.+|+++++++.+ + .+.+.+++++ .              +.+...++.+++++|..+|+|++
T Consensus       284 ~~~~~~l~~l~y~-s~~~v~l~~~~~~~~~~~~~~~i~vp~-~--------------~~~~~ri~~~s~~~p~~ap~g~~  347 (484)
T 4dsg_A          284 DEWPAIADKMVYS-STNVIGIGVKGTPPPHLKTACWLYFPE-D--------------TSPFYRATVFSNYSKYNVPEGHW  347 (484)
T ss_dssp             GGHHHHHHHCCEE-EEEEEEEEEESCCCGGGTTCCEEECCS-T--------------TCSCSEEECGGGTCGGGSCTTEE
T ss_pred             HHHHHHHhCCCcC-ceEEEEEEEcCCCcccCCCCeEEEEEc-C--------------CCeEEEEEeecCCCcccCCCCeE
Confidence            6777888999998 78999999998743 2 2345565532 1              12445678888889999999998


Q ss_pred             EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCcc--CceEEEEec-CcccHHHHhCCCCCcccccccccc-c
Q psy10545       1079 TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR--KKLITQRIF-TPNDFKDVLGSYLGSAFSFAPLLT-Q 1154 (1428)
Q Consensus      1079 ~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~--~~i~~~~~~-tp~~~~~~~~~~~G~~~g~~~~~~-q 1154 (1428)
                      ++++.++..      ..|..+++++++.++++|.+ + ..+.  +.+....+. .|.    .+..     |  .++.. .
T Consensus       348 ~l~~e~~~~------~~~~~~d~~l~~~a~~~L~~-~-~~~~~~~~~~~~~v~r~~~----~yP~-----y--~~~~~~~  408 (484)
T 4dsg_A          348 SLMLEVSES------KYKPVNHSTLIEDCIVGCLA-S-NLLLPEDLLVSKWHYRIEK----GYPT-----P--FIGRNNL  408 (484)
T ss_dssp             EEEEEEEEB------TTBCCCTTSHHHHHHHHHHH-T-TSCCTTCCEEEEEEEEEEE----EEEC-----C--BTTHHHH
T ss_pred             EEEEEEecC------cCCcCCHHHHHHHHHHHHHH-c-CCCCccceEEEEEEEEeCc----cccC-----C--CccHHHH
Confidence            888877553      13445668899999999998 3 2332  223221110 011    0000     0  00000 0


Q ss_pred             ccccCCCCCCCCCCceEEecCCccC--C-CCcccccccccccccccc
Q psy10545       1155 SAWFRPHNRDKNLTNLYFVGAGTHP--G-AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1155 ~~~~rp~~~t~~i~~Ly~aGd~t~p--g-~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ....+....  .. ||+++|.....  | .+++.|+.+|..+|+.|.
T Consensus       409 ~~~~~~~l~--~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          409 LEKAQPELM--SR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             HHHHHHHHH--HT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH--hC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence            001111111  13 89999986432  3 378999999999999886

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.89  E-value=2.8e-22  Score=245.59  Aligned_cols=405  Identities=13%  Similarity=0.081  Sum_probs=240.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC---CeEEcccccccCC--chHHHHHHHHhccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD---GFIFDAGPTVITD--PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~---G~~~d~G~~~i~~--~~~~~~l~~~lG~~l~  785 (1428)
                      ++||||||||++||+||+.|+++|++|+|||+++++||++.+.+.+   |..++.|++++..  ...+.++++++|++..
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   80 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTA   80 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeee
Confidence            4799999999999999999999999999999999999999998877   9999999999864  3455667788885422


Q ss_pred             ccceEEecCCceEEEe--CCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545        786 NYVNLLPIKPFYRLYW--GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI  863 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1428)
                            .........+  .++.........           +.....+...   ...+...........++..       
T Consensus        81 ------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~-------  133 (431)
T 3k7m_X           81 ------AASEFTSFRHRLGPTAVDQAFPIP-----------GSEAVAVEAA---TYTLLRDAHRIDLEKGLEN-------  133 (431)
T ss_dssp             ------ECCCCCEECCBSCTTCCSSSSCCC-----------GGGHHHHHHH---HHHHHHHHTTCCTTTCTTS-------
T ss_pred             ------ecCCCCcEEEEecCCeecCCCCCC-----------HHHHHHHHHH---HHHHHHHHHhcCCCCCccC-------
Confidence                  1111112222  122111000000           0011111111   1111111000000001000       


Q ss_pred             hHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHHHHHhccc---------cceeeecCchHHH
Q psy10545        864 LPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTLIHALEYE---------WGIWFPKGGVGAL  933 (1428)
Q Consensus       864 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~~~~~~~~---------~g~~~~~gG~~~l  933 (1428)
                       +....+  +.++.+++......+....++.. ....++..+.+.+....+ .++...         .....+.+|++.+
T Consensus       134 -~~~~~~--d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~l  209 (431)
T 3k7m_X          134 -QDLEDL--DIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWML-QLVAAHHYSILGVVLSLDEVFSNGSADL  209 (431)
T ss_dssp             -SSCGGG--CSBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHH-HHHHHTTSCHHHHHHTCCEEETTCTHHH
T ss_pred             -cchhhh--cCCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHH-HHHHhcCCccceeecchhhhcCCcHHHH
Confidence             000112  27788888888777777766643 334456666666553221 111111         1112578999998


Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCC
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMS 1013 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~ 1013 (1428)
                      ++.+.+   +.| +|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+. .+.-.+.+|....+.+....+.
T Consensus       210 ~~~~~~---~~g-~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vi~a~~~~~l~-~i~~~p~l~~~~~~~~~~~~~~  283 (431)
T 3k7m_X          210 VDAMSQ---EIP-EIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIVATPMNTWR-RIVFTPALPERRRSVIEEGHGG  283 (431)
T ss_dssp             HHHHHT---TCS-CEESSCCEEEEECSSSS-EEEEETTSCCEEEEEEEECSCGGGGG-GSEEESCCCHHHHHHHHHCCCC
T ss_pred             HHHHHh---hCC-ceEeCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCcchHh-heeeCCCCCHHHHHHHHhCCCc
Confidence            888754   446 99999999999988777 55888899889999999999888664 3544567888888889888887


Q ss_pred             CceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545       1014 NSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus      1014 ~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
                       ..++|++.+++++++     ++...+           .   ....++...+.       ..+..++..++..+.     
T Consensus       284 -~~~kv~~~~~~~~~~-----i~~~~d-----------~---~~~~~~~~~~~-------~~~~~~l~~~~~g~~-----  331 (431)
T 3k7m_X          284 -QGLKILIHVRGAEAG-----IECVGD-----------G---IFPTLYDYCEV-------SESERLLVAFTDSGS-----  331 (431)
T ss_dssp             -CEEEEEEEEESCCTT-----EEEEBS-----------S---SSSEEEEEEEC-------SSSEEEEEEEEETTT-----
T ss_pred             -ceEEEEEEECCCCcC-----ceEcCC-----------C---CEEEEEeCcCC-------CCCCeEEEEEecccc-----
Confidence             568999999998742     221111           0   01122222211       123345555544322     


Q ss_pred             CCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEe
Q psy10545       1094 INWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFV 1173 (1428)
Q Consensus      1094 ~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~a 1173 (1428)
                        ++..++   +.+.+.|++ ++|++.  .+...   ...|....+. .|+.....++  +....++..+.| +.+||||
T Consensus       332 --~~~~~~---~~~~~~l~~-~~~~~~--~~~~~---~~~W~~d~~~-~G~~~~~~~g--~~~~~~~~l~~p-~g~~~fA  396 (431)
T 3k7m_X          332 --FDPTDI---GAVKDAVLY-YLPEVE--VLGID---YHDWIADPLF-EGPWVAPRVG--QFSRVHKELGEP-AGRIHFV  396 (431)
T ss_dssp             --CCTTCH---HHHHHHHHH-HCTTCE--EEEEE---CCCTTTCTTT-SSSSCCCCTT--TTTTSSGGGGSC-BTTEEEC
T ss_pred             --CCCCCH---HHHHHHHHH-hcCCCC--ccEeE---ecccCCCCCC-CCCCCCcCCC--CCcccHHHHhCC-CCcEEEE
Confidence              111111   245567787 788754  21111   1233332222 3443222222  323345556666 8999999


Q ss_pred             cCCccC--CCCccccccccccccccccc
Q psy10545       1174 GAGTHP--GAANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus      1174 Gd~t~p--g~gv~GA~~sg~~~a~~i~~ 1199 (1428)
                      |+.|.+  .+.|+||+.||..+|..|.-
T Consensus       397 Ge~t~~~~~g~~~GA~~sg~raa~~i~~  424 (431)
T 3k7m_X          397 GSDVSLEFPGYIEGALETAECAVNAILH  424 (431)
T ss_dssp             SGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhccCCeEehHHHHHHHHHHHHHHh
Confidence            988763  34699999999999998863

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.89  E-value=2.6e-22  Score=245.17  Aligned_cols=408  Identities=13%  Similarity=0.129  Sum_probs=231.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC-CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G-~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~  787 (1428)
                      .++||+|||||++||+||++|+++| ++|+|+|+++++||+++|.+.+|+.+|.|++++.. ...+.++++++|.++.. 
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~~-   83 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVDG-   83 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCCS-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCcccc-
Confidence            4689999999999999999999999 99999999999999999999999999999999865 35678899999965422 


Q ss_pred             ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhccc-CcccHHHHHHhhHH
Q psy10545        788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASK-SFLTINDMLFILPK  866 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  866 (1428)
                           .+....+.+.+|.......++...            ..+...+..+.......+..+... .+..          
T Consensus        84 -----~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------  136 (424)
T 2b9w_A           84 -----PKLRREFLHEDGEIYVPEKDPVRG------------PQVMAAVQKLGQLLATKYQGYDANGHYNK----------  136 (424)
T ss_dssp             -----CCCCEEEECTTSCEECGGGCTTHH------------HHHHHHHHHHHHHHHTTTTTTTSSSSSSC----------
T ss_pred             -----ccccceeEcCCCCEeccccCcccc------------hhHHHHHHHHHHHHhhhhhhcccccchhh----------
Confidence                 122234556666644221111110            000001111111111111111000 0000          


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhc-------cccceeeecCchHHHHHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALE-------YEWGIWFPKGGVGALIKALIK  939 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~-------~~~g~~~~~gG~~~l~~~L~~  939 (1428)
                       .......++.+|+.+...+.....+..........++.+.++.+. +.+..       ..++.+.+.+|++.++++|.+
T Consensus       137 -~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~  214 (424)
T 2b9w_A          137 -VHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYGHFDNVPAAYV-LKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNA  214 (424)
T ss_dssp             -CCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCCCCCTTTSBHHHH-HHHSCHHHHHHHHHTCCBCCTTCHHHHHHHHHH
T ss_pred             -hhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhccCChHhcCHHHH-HHhhhHhhhhcccCCceEEeCChHHHHHHHHHH
Confidence             001125789999988766543333333222222235666666443 22211       123567889999999999987


Q ss_pred             HHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEE
Q psy10545        940 LFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVI 1019 (1428)
Q Consensus       940 ~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v 1019 (1428)
                      .+   +.+|++|++|++|..+++++ .|++.+|+ +.||+||+|+|+..+.. +++.  .| ..++.+.++.+..  +.+
T Consensus       215 ~l---~~~v~~~~~V~~i~~~~~~v-~v~~~~g~-~~ad~Vv~a~~~~~~~~-~l~~--~~-~~~~~~~~~~~~~--~~~  283 (424)
T 2b9w_A          215 TL---EHPAERNVDITRITREDGKV-HIHTTDWD-RESDVLVLTVPLEKFLD-YSDA--DD-DEREYFSKIIHQQ--YMV  283 (424)
T ss_dssp             HS---SSCCBCSCCEEEEECCTTCE-EEEESSCE-EEESEEEECSCHHHHTT-SBCC--CH-HHHHHHTTCEEEE--EEE
T ss_pred             hh---cceEEcCCEEEEEEEECCEE-EEEECCCe-EEcCEEEECCCHHHHhh-ccCC--CH-HHHHHHhcCCcce--eEE
Confidence            76   46899999999999888774 48888884 99999999999987654 4432  22 2334556666652  334


Q ss_pred             EEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCc-HH
Q psy10545       1020 YFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINW-SE 1098 (1428)
Q Consensus      1020 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~-~~ 1098 (1428)
                      .+.+...+|..   ..+++.++....     .+     ..++....  . +   +.....+..++..+..     .+ +.
T Consensus       284 ~~~~~~~~~~~---~~~~~~~~~~~~-----~g-----~~~~~~~~--~-~---~~~~~~l~~~~~~~~~-----~~~~~  339 (424)
T 2b9w_A          284 DACLVKEYPTI---SGYVPDNMRPER-----LG-----HVMVYYHR--W-A---DDPHQIITTYLLRNHP-----DYADK  339 (424)
T ss_dssp             EEEEESSCCSS---EEECGGGGSGGG-----TT-----SCCEEEEC--C-T---TCTTSCEEEEEECCBT-----TBCCC
T ss_pred             EEEEeccCCcc---cccccCCCCCcC-----CC-----cceEEeee--c-C---CCCceEEEEEeccCCC-----ccccc
Confidence            44555555432   234433221100     00     11111111  0 1   1112344444432211     12 22


Q ss_pred             HHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCcc
Q psy10545       1099 ESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTH 1178 (1428)
Q Consensus      1099 ~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~ 1178 (1428)
                      +.+++.+.+++.|.+ +.+...+.+...      +|... ..     +.  +...+.+..++.....+.+||||||+++.
T Consensus       340 ~~~~~~~~v~~~l~~-l~~~~~~~~~~~------~w~~~-p~-----~~--~~~~~~G~~~~~~~~~~~~~l~~aG~~~~  404 (424)
T 2b9w_A          340 TQEECRQMVLDDMET-FGHPVEKIIEEQ------TWYYF-PH-----VS--SEDYKAGWYEKVEGMQGRRNTFYAGEIMS  404 (424)
T ss_dssp             CHHHHHHHHHHHHHH-TTCCEEEEEEEE------EEEEE-EE-----CC--HHHHHTTHHHHHHHTTTGGGEEECSGGGS
T ss_pred             ChHHHHHHHHHHHHH-cCCccccccccc------ceeee-ec-----cC--HHHHhccHHHHHHHHhCCCCceEeccccc
Confidence            357888999999997 544433222111      11100 00     00  00000000111111123689999999987


Q ss_pred             CCCCcccccccccccccccc
Q psy10545       1179 PGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1179 pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .| .+++|+.||..+|+.+.
T Consensus       405 ~g-~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          405 FG-NFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             CS-SHHHHHHHHHHHHHHHT
T ss_pred             cc-cHHHHHHHHHHHHHHhc
Confidence            44 48999999999998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.87  E-value=3e-21  Score=233.52  Aligned_cols=286  Identities=14%  Similarity=0.111  Sum_probs=172.5

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCc-ccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYP-NTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~-~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +|+||+|+||+|+++|+.|+++|++|+|+|+++.+           +.+ .||+++.+..+.  ......+...      
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~-----------~~~~~~g~~l~~~~l~--~l~~~~~~~~------   65 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI-----------GSPVRCGEGLSKGILN--EADIKADRSF------   65 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST-----------TCSCCSCCEEETHHHH--HTTCCCCTTT------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------CCCCceecccCHHHHH--HcCCCchhhh------
Confidence            68899999999999999999999999999998766           333 466777665332  1111110000      


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                                        ...++..+....... ..+.++. .......+++++|..|++.|.+++.+.| .++.+++|+
T Consensus        66 ------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~  126 (397)
T 3oz2_A           66 ------------------IANEVKGARIYGPSEKRPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPAL  126 (397)
T ss_dssp             ------------------EEEEESEEEEECTTCSSCEEEEC-SSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred             ------------------hhcccceEEEEeCCCceEeeccc-cccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeee
Confidence                              000111111111111 1111111 1123346789999999999999999888 788899998


Q ss_pred             EEeCC--e---EEE-cCC--cEEEeeEEEecCCCCCCC-----C----CcceEEEEEEEEEecCCcCCCCceEEecccCC
Q psy10545        469 IITPT--S---IRI-NNK--KIINANCIIDGRGLKNSQ-----F----DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       469 ~i~~~--~---v~l-~~g--~~~~a~lvI~AdG~~S~~-----~----~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      ++..+  .   +.. .++  .+++|++||+|||.+|..     .    ..+.+......++............+.+... 
T Consensus       127 ~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (397)
T 3oz2_A          127 GVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSI-  205 (397)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTT-
T ss_pred             eeeeccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeecc-
Confidence            87532  2   222 233  369999999999999751     1    1233444455544433322222222222211 


Q ss_pred             CCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHc-CCccceeeeeeeeeecccCCchhhhhccCccc
Q psy10545        532 KNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKN-RWKLKNIEREEIGSIPIALKNEKIIKFKKTIC  610 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~l  610 (1428)
                        ...+++|++|.+++.++++......... ....+.+.+.+++... ++..........+.+|+...... ...+|+++
T Consensus       206 --~~~g~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l  281 (397)
T 3oz2_A          206 --APAGYIWVFPKGEGMANVGIGSSINWIH-NRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMP-ITMPGLML  281 (397)
T ss_dssp             --STTEEEEEEEEETTEEEEEEEEETTTSC-SHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSC-CEETTEEE
T ss_pred             --CCCceEEEeecccceeEEEEeeccchhh-hhhhHHHHHHHHHHhCccccccceeeeeeccccccCcccc-eeeeeEEE
Confidence              1235789999999888887665544332 4455566666655432 11223334445677887655432 35589999


Q ss_pred             ccccccccccCCCCChHHHHHHHHHHHhhc
Q psy10545        611 VGLRANLLHATTGYSLPIAIQLAENIAKYS  640 (1428)
Q Consensus       611 vGdAA~~vhP~~G~G~~~a~~la~~l~~~~  640 (1428)
                      +|||||.++|++|||++.|+..+..+++++
T Consensus       282 vGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i  311 (397)
T 3oz2_A          282 VGDAARLIDPITGGGIANAIVSGMYAAQVT  311 (397)
T ss_dssp             CGGGGTCSCTTTCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCcchhHHHHHHHHHHHHHHH
Confidence            999999999999999876555544444433

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.87  E-value=7.5e-22  Score=252.77  Aligned_cols=238  Identities=12%  Similarity=0.031  Sum_probs=145.2

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC------CcEEEcCEEEEcCCHHHHHHHhc-
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN------GQIFDADIIVSNADIINTYRNLL-  994 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~------G~~i~ad~VV~A~~~~~~~~~Ll-  994 (1428)
                      ..+.++||++.|+++|++     +.+|++|++|++|..++++ +.|++.+      |+++.||+||+|+|+..+.. +. 
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~-l~~  464 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ-QPP  464 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEETTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHC-SSC
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECCCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhc-ccC
Confidence            346889999999999875     5689999999999999887 5677655      57899999999998776653 21 


Q ss_pred             ---CCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCC
Q psy10545        995 ---GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDL 1070 (1428)
Q Consensus       995 ---~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~ 1070 (1428)
                         -.+++|..+.++++++.++ +..||++.|++++ +.......++.+..             .....+++.+++.   
T Consensus       465 ~i~f~P~LP~~k~~Ai~~l~~g-~~~KV~l~f~~~fW~~~~~~~G~l~~~~-------------~~~~~~~~~~~~~---  527 (662)
T 2z3y_A          465 AVQFVPPLPEWKTSAVQRMGFG-NLNKVVLCFDRVFWDPSVNLFGHVGSTT-------------ASRGELFLFWNLY---  527 (662)
T ss_dssp             SSEEESCCCHHHHHHHHHSEEC-CCEEEEEECSSCCSCTTCSEEEECCSSS-------------TTTTEEEEEECCS---
T ss_pred             ceEEcCCCCHHHHHHHHhCCcc-ceeEEEEEcCcccccCCCCceeeecCCC-------------CCCCceeEEEeCC---
Confidence               2467898888999999998 6789999999995 32111122221110             1122344444331   


Q ss_pred             CCCCCCccEEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCccccc
Q psy10545       1071 SLAPTGCSTFYALIPVPNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSAFSF 1148 (1428)
Q Consensus      1071 s~ap~G~~~l~v~~~~p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~~g~ 1148 (1428)
                           +..++.+++..+...    .+ ..+++++.+.++++|.+ +++... .......+   ..|.+. ....|+....
T Consensus       528 -----~~~vL~~~~~G~~a~----~~~~lsdee~~~~~l~~L~~-~~g~~~~~~p~~~~v---~~W~~d-p~~~Gsys~~  593 (662)
T 2z3y_A          528 -----KAPILLALVAGEAAG----IMENISDDVIVGRCLAILKG-IFGSSAVPQPKETVV---SRWRAD-PWARGSYSYV  593 (662)
T ss_dssp             -----SSSEEEEEECTHHHH----HHTTSCHHHHHHHHHHHHHH-HHCTTSSCCCSEEEE---CCTTTC-TTTSSSCEEC
T ss_pred             -----CCCEEEEEeccHhHH----HHHhCCHHHHHHHHHHHHHH-HhCCcccCCCceeEE---EEECCC-CCCCcccccC
Confidence                 223565555321110    11 12467888999999998 665321 12222211   122222 1123332111


Q ss_pred             cccccc---ccccCC--------CCCCCCCCceEEecCCccC--CCCcccccccccccccccc
Q psy10545       1149 APLLTQ---SAWFRP--------HNRDKNLTNLYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1149 ~~~~~q---~~~~rp--------~~~t~~i~~Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .++...   .....|        ....+ .++|||||++|++  .++|+||+.||..+|..|.
T Consensus       594 ~pg~~~~~~~~l~~p~~~~~~~~~~~~~-~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~  655 (662)
T 2z3y_A          594 AAGSSGNDYDLMAQPITPGPSIPGAPQP-IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA  655 (662)
T ss_dssp             BTTCCTHHHHHHHCCBCC---------C-CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHhCcCccccccccccCC-CCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHH
Confidence            221110   001112        22333 6899999999974  3479999999999998874

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.87  E-value=7.7e-22  Score=254.52  Aligned_cols=238  Identities=12%  Similarity=0.026  Sum_probs=144.2

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC------CcEEEcCEEEEcCCHHHHHHHhc-
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN------GQIFDADIIVSNADIINTYRNLL-  994 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~------G~~i~ad~VV~A~~~~~~~~~Ll-  994 (1428)
                      ..+.++||++.|+++|++     +.+|++|++|++|..++++ +.|++.+      |+++.||+||+|+|+..+.. +. 
T Consensus       563 ~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~-l~~  635 (852)
T 2xag_A          563 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ-QPP  635 (852)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEETTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHC-SSC
T ss_pred             ceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEcCCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHh-hhc
Confidence            346889999999999976     4579999999999999887 5577655      57899999999998876654 32 


Q ss_pred             ---CCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCC
Q psy10545        995 ---GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDL 1070 (1428)
Q Consensus       995 ---~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~ 1070 (1428)
                         -.+.+|.++.++++++.++ ++.+|++.|++++ +.-.....++.+...             ....+++.+++.   
T Consensus       636 ~I~F~P~LP~~k~~AI~~l~~g-~v~KV~L~F~~~fW~~~~~~fG~l~~~~~-------------~~~~l~~~~~~~---  698 (852)
T 2xag_A          636 AVQFVPPLPEWKTSAVQRMGFG-NLNKVVLCFDRVFWDPSVNLFGHVGSTTA-------------SRGELFLFWNLY---  698 (852)
T ss_dssp             SSEEESCCCHHHHHHHHHSEEC-CCEEEEEECSSCCSCTTCCEEEECCSSST-------------TTTTTCEEEECS---
T ss_pred             ccccCCCCCHHHHHHHHcCCcc-ceEEEEEEcCCcccCCCCCeeeeeccccC-------------CCCceEEEecCC---
Confidence               2467888888999999998 6789999999984 321111222221100             001111222221   


Q ss_pred             CCCCCCccEEEEEEecCCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCccccc
Q psy10545       1071 SLAPTGCSTFYALIPVPNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSAFSF 1148 (1428)
Q Consensus      1071 s~ap~G~~~l~v~~~~p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~~g~ 1148 (1428)
                           +..++++++..+...    .+ ..+++++++.++++|.+ +++... .......+   ..|.+. ....|++..+
T Consensus       699 -----~~pvLl~~v~G~~a~----~l~~lsdeel~~~~l~~L~~-ifG~~~~~~P~~~~v---trW~~d-p~s~GsYs~~  764 (852)
T 2xag_A          699 -----KAPILLALVAGEAAG----IMENISDDVIVGRCLAILKG-IFGSSAVPQPKETVV---SRWRAD-PWARGSYSYV  764 (852)
T ss_dssp             -----SSSEEEEEECHHHHH----HGGGSCHHHHHHHHHHHHHH-HHCTTTCCCCSEEEE---CCTTTC-TTTSSSCEEC
T ss_pred             -----CCCEEEEEecCcCHH----HHhcCCHHHHHHHHHHHHHH-HhCccccCCceEEEE---EecCCC-CCcCcccccc
Confidence                 123555555332111    12 22468889999999998 664321 12222221   122222 1113332111


Q ss_pred             cccccc---cccc--------CCCCCCCCCCceEEecCCccC--CCCcccccccccccccccc
Q psy10545       1149 APLLTQ---SAWF--------RPHNRDKNLTNLYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1149 ~~~~~q---~~~~--------rp~~~t~~i~~Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      .++...   ....        +|....+ .++|||||++|+.  .++|+||+.||..+|..|.
T Consensus       765 ~pG~~~~~~~~L~~P~~~~~~~p~~~~~-~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il  826 (852)
T 2xag_A          765 AAGSSGNDYDLMAQPITPGPSIPGAPQP-IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA  826 (852)
T ss_dssp             BTTCCTTHHHHTTSCBCCCCSSTTCCCC-CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHhCccccccccccccCC-CCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHH
Confidence            121100   0011        1222333 6899999999974  3479999999999998874

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=230.65  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=150.3

Q ss_pred             eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC--CCCC
Q psy10545        923 IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ--YAFG 1000 (1428)
Q Consensus       923 ~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~--~~~p 1000 (1428)
                      .+...+|++.+.+.|++.+   |++|+++++|++|..++++ +.|++.+|+++.||.||+|+|++.+.+ |+.+  +.+|
T Consensus       104 ~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~-ll~~~~~~l~  178 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRDDK-WEVSKQTGSPEQFDLIVLTMPVPEILQ-LQGDITTLIS  178 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECSSS-EEEEESSSCCEEESEEEECSCHHHHTT-CBSTHHHHSC
T ss_pred             ceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcCEEEECCCHHHHHH-HhcccccccC
Confidence            4567889999999998776   8999999999999998877 568888898899999999999887765 6654  3467


Q ss_pred             hhHHHHHhhcCCCCceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCC-CCCcc
Q psy10545       1001 KKKYMNLIKKKMSNSLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA-PTGCS 1078 (1428)
Q Consensus      1001 ~~~~~~l~~~~~~~s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~a-p~G~~ 1078 (1428)
                      +...+.+.++.|. ++.+|++.++++ +.+.+...+++..                ..+..++...+.+ |.+. |++..
T Consensus       179 ~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~g~~~~~----------------~~~~~~~~~~~~k-~~r~~~~~~~  240 (342)
T 3qj4_A          179 ECQRQQLEAVSYS-SRYALGLFYEAGTKIDVPWAGQYITS----------------NPCIRFVSIDNKK-RNIESSEIGP  240 (342)
T ss_dssp             HHHHHHHHTCCBC-CEEEEEEECSSCC--CCSCSEEECSS----------------CSSEEEEEEHHHH-TTCCCC-CCC
T ss_pred             HHHHHHHhcCCcc-ccEEEEEEECCCCccCCceeeEEccC----------------CcceEEEEccccC-CCCCCCCCCc
Confidence            7778899999998 789999999986 3233322222211                1123444444433 4432 33334


Q ss_pred             EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545       1079 TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus      1079 ~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
                      .+++++......   ...+.+++++.+.++++|.+ .++...+. +...+.   .|.       .+...+.  .    ..
T Consensus       241 ~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-~~g~~~~p-~~~~v~---rW~-------~a~p~~~--~----~~  299 (342)
T 3qj4_A          241 SLVIHTTVPFGV---TYLEHSIEDVQELVFQQLEN-ILPGLPQP-IATKCQ---KWR-------HSQVTNA--A----AN  299 (342)
T ss_dssp             EEEEEECHHHHH---HTTTSCHHHHHHHHHHHHHH-HSCSCCCC-SEEEEE---EET-------TCSBSSC--C----SS
T ss_pred             eEEEECCHHHHH---HhhcCCHHHHHHHHHHHHHH-hccCCCCC-ceeeec---ccc-------ccccccc--c----CC
Confidence            555555331110   11233568999999999998 77643322 222211   111       1111000  0    01


Q ss_pred             CCCCCC-CCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545       1159 RPHNRD-KNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1159 rp~~~t-~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      ++.... +..+||++||||+. |.|+++|+.||+.+|+.|.
T Consensus       300 ~~~~~~~~~~~~l~laGd~~~-g~~v~~ai~sg~~aa~~i~  339 (342)
T 3qj4_A          300 CPGQMTLHHKPFLACGGDGFT-QSNFDGCITSALCVLEALK  339 (342)
T ss_dssp             SCSCEEEETTTEEEECSGGGS-CSSHHHHHHHHHHHHHHHT
T ss_pred             CcceeEecCCccEEEEccccC-CCCccHHHHHHHHHHHHHH
Confidence            222221 23689999999997 7799999999999998875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.86  E-value=9e-21  Score=228.53  Aligned_cols=327  Identities=15%  Similarity=0.181  Sum_probs=219.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC--------------------CeEEcccccccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--------------------GFIFDAGPTVITD  769 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~--------------------G~~~d~G~~~i~~  769 (1428)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+++++||++.+.+.+                    +|.+|.+++.+..
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~   98 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILV   98 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEET
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeec
Confidence            46899999999999999999999999999999999999999998632                    4789999998877


Q ss_pred             chHHHHHHHHhcccccccceEEecCCceEEEe-------CCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
Q psy10545        770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYW-------GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVF  842 (1428)
Q Consensus       770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  842 (1428)
                      .+.+.+++...|  +.++++|.+.+..+.+..       .+|+.+.+|.+....... ..+.+.++..+.+|+..+....
T Consensus        99 ~g~L~~lL~~~g--v~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~-~lLs~~eK~~l~kFL~~l~~~~  175 (475)
T 3p1w_A           99 GGNLVKILKKTR--VTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVS-PLLSLMEKNRCKNFYQYVSEWD  175 (475)
T ss_dssp             TSHHHHHHHHTT--CGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTC-TTSCHHHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCC--chheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhc-cCCCHHHHHHHHHHHHHHHhhh
Confidence            777778888887  577899999888765543       256788888875554321 2334455666666665544321


Q ss_pred             HHhhhhhcccCcccHHHHHHhhHHHHhh-cccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhH--HHH-HHHHh
Q psy10545        843 KEGYLSFASKSFLTINDMLFILPKLIKI-KAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSS--IYT-LIHAL  917 (1428)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~--~~~-~~~~~  917 (1428)
                      ..        ....+          ..+ ....++.+|++++..++.+..++.. .+.....++.+.++  ... +..+.
T Consensus       176 ~~--------~~~~~----------~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~  237 (475)
T 3p1w_A          176 AN--------KRNTW----------DNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYM  237 (475)
T ss_dssp             TT--------CGGGS----------TTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHH
T ss_pred             hc--------cchhh----------hcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHH
Confidence            11        00000          001 1257889999988888888877642 22222222222232  111 11121


Q ss_pred             ---c--cccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545        918 ---E--YEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHLKNGQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       918 ---~--~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~  991 (1428)
                         .  ......+|+||++.|+++|++.+++.|++|+++++|++|.. +++++++|++.+|+++.||+||++++...   
T Consensus       238 ~Sl~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~---  314 (475)
T 3p1w_A          238 QSISAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVM---  314 (475)
T ss_dssp             HHHHHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCT---
T ss_pred             HHHhhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccc---
Confidence               1  12346799999999999999999999999999999999999 77889999999999999999999996431   


Q ss_pred             HhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCc---ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCC
Q psy10545        992 NLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA---HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVT 1068 (1428)
Q Consensus       992 ~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~ 1068 (1428)
                            .+|...    ..   ...+......++.++++..   ...+.+++..            ....+.+|+..-|. 
T Consensus       315 ------~~p~~~----~~---~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~------------~~~~~~iy~~~~s~-  368 (475)
T 3p1w_A          315 ------HLKNKI----KK---IGQVIRCICILSNPIPETNQTNSCQIIIPQNQ------------LNRKSDIYINLVSF-  368 (475)
T ss_dssp             ------TSTTSE----EE---EEEEEEEEEEESSCCTTSTTCSSEEEEECGGG------------GTSSSCEEEEEEEG-
T ss_pred             ------cCcccc----cc---cceEEEEEEEEeccCcccCCCceEEEEeCCcc------------cCCCCCEEEEEECC-
Confidence                  011111    00   1134555666788876543   2345554321            12234466655443 


Q ss_pred             CCCCCCCCccEEEEEEec
Q psy10545       1069 DLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus      1069 d~s~ap~G~~~l~v~~~~ 1086 (1428)
                      +...||.|+.++++.+..
T Consensus       369 ~~~~cp~G~~i~~~st~~  386 (475)
T 3p1w_A          369 QHGVTLKGKYIAIVSATV  386 (475)
T ss_dssp             GGTSSCTTCEEEEEEEEC
T ss_pred             CcCcCCCCcEEEEEEeec
Confidence            356789999988888765

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.85  E-value=1.7e-21  Score=250.28  Aligned_cols=420  Identities=13%  Similarity=0.115  Sum_probs=229.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC--chHHHHHHHHhccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD--PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~--~~~~~~l~~~lG~~l~  785 (1428)
                      +..+||+|||||++||+||+.|++.|++|+|+|+++++||++.|... +|+.+|.|++++++  .+....+.+++|++..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~  413 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMH  413 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCccc
Confidence            34689999999999999999999999999999999999999999875 58999999999864  4566778899986432


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP  865 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1428)
                            ...........+|....    . .......       ..+..+++.......    ........+......   
T Consensus       414 ------~~~~~~~l~~~~g~~~~----~-~~~~~~~-------~~~~~ll~~~~~~~~----~~~~~~d~sl~~~~~---  468 (776)
T 4gut_A          414 ------KFGERCDLIQEGGRITD----P-TIDKRMD-------FHFNALLDVVSEWRK----DKTQLQDVPLGEKIE---  468 (776)
T ss_dssp             ------ECCSCCCEECTTSCBCC----H-HHHHHHH-------HHHHHHHHHHHHHGG----GCCGGGCCBHHHHHH---
T ss_pred             ------ccccccceEccCCcccc----h-hHHHHHH-------HHHHHHHHHHHHHhh----cccccccccHHHHHH---
Confidence                  11122223333443211    0 0100000       011112111111110    000000111111100   


Q ss_pred             HHHhhcccCCHHHHHHhhcC--C----HHHHHHHHhhcccccCCCCchhHHH-HHHH-HhccccceeeecCchHHHHHHH
Q psy10545        866 KLIKIKAWKSVYSIVSQFIK--N----DYLKQAFSFNSLFIGGNPFSTSSIY-TLIH-ALEYEWGIWFPKGGVGALIKAL  937 (1428)
Q Consensus       866 ~~~~~~~~~s~~~~l~~~~~--~----~~l~~~l~~~~~~~g~~p~~~s~~~-~~~~-~~~~~~g~~~~~gG~~~l~~~L  937 (1428)
                              ....+++.+...  .    ..+...........|..+...+... .... +....+....+.+|++.+.++|
T Consensus       469 --------~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~~l~~aL  540 (776)
T 4gut_A          469 --------EIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKL  540 (776)
T ss_dssp             --------HHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTHHHHHHH
T ss_pred             --------HHHHHHHHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHHHHHHHH
Confidence                    001111111100  0    0011111111111233333332210 0000 1112233457789999998888


Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhcCCCCce
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
                      ++     |++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+....+ -.+.+|..+.+++.++.++ ++
T Consensus       541 a~-----gl~I~l~t~V~~I~~~~~~-v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g-~~  613 (776)
T 4gut_A          541 AE-----GLDIQLKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAG-II  613 (776)
T ss_dssp             HT-----TSCEESSCCEEEEECSSSS-EEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEE-CC
T ss_pred             Hh-----CCcEEcCCeeEEEEEcCCE-EEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCe-eE
Confidence            64     7899999999999988877 568888998999999999998876653232 2467888888999999987 67


Q ss_pred             EEEEEeecCCc-CC-Cc--ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCC-ccEEEEEEecCCCCC
Q psy10545       1017 FVIYFGLSEQY-TH-LA--HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTG-CSTFYALIPVPNLSN 1091 (1428)
Q Consensus      1017 ~~v~l~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G-~~~l~v~~~~p~~~~ 1091 (1428)
                      .+|++.|+++| +. ..  ....++.+...             ....+.+.+..      .|+| ..++..++..+..  
T Consensus       614 ~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~-------------~~~~~~~~~d~------~p~g~~~vL~~~i~G~~a--  672 (776)
T 4gut_A          614 EKIALQFPYRFWDSKVQGADFFGHVPPSAS-------------KRGLFAVFYDM------DPQKKHSVLMSVIAGEAV--  672 (776)
T ss_dssp             EEEEEECSSCTTHHHHTTCSEEEECCSSGG-------------GTTEEEEEEES------CTTSCSCEEEEEECTHHH--
T ss_pred             EEEEEecCcccccccCCCCceEEeecCCcC-------------CCceEEEEecC------CCCCCceEEEEEecchhH--
Confidence            89999999984 21 00  11111211100             11222232221      2333 3455555532110  


Q ss_pred             CCCCcH-HHHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCc
Q psy10545       1092 SSINWS-EESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTN 1169 (1428)
Q Consensus      1092 ~~~~~~-~~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~ 1169 (1428)
                        ..+. .+++++.+.++++|.+ +++... .......+   ..|....+ ..|+.....++..  ....+....|..++
T Consensus       673 --~~l~~lsdeel~~~~l~~L~~-ifg~~~~~~P~~~~v---t~W~~dp~-s~Gsys~~~~g~~--~~~~~~L~~p~~gr  743 (776)
T 4gut_A          673 --ASVRTLDDKQVLQQCMATLRE-LFKEQEVPDPTKYFV---TRWSTDPW-IQMAYSFVKTGGS--GEAYDIIAEDIQGT  743 (776)
T ss_dssp             --HHHHTSCHHHHHHHHHHHHHH-HTTTSCCCCCSEEEE---CCGGGCTT-TCCSEEEEBTTCC--THHHHHHHCCBTTT
T ss_pred             --HHHHcCCHHHHHHHHHHHHHH-HhCcccccCcceEEE---ecCCCCCc-cCCCCCccCCCCc--hhHHHHHhCcCCCc
Confidence              0121 2468899999999998 776421 11222111   12333222 2333221111110  00011112232478


Q ss_pred             eEEecCCccC--CCCcccccccccccccccc
Q psy10545       1170 LYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1170 Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |||||++|++  .++|+||+.||..+|..|.
T Consensus       744 L~FAGE~Ts~~~~gtveGAi~SG~RaA~~Il  774 (776)
T 4gut_A          744 VFFAGEATNRHFPQTVTGAYLSGVREASKIA  774 (776)
T ss_dssp             EEECSGGGCSSSCSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEehhhcCCCCcCHHHHHHHHHHHHHHHH
Confidence            9999999974  3469999999999998875

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.82  E-value=1e-18  Score=215.91  Aligned_cols=274  Identities=12%  Similarity=0.109  Sum_probs=184.5

Q ss_pred             CeEEcccccccCCchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHH
Q psy10545        757 GFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLN  836 (1428)
Q Consensus       757 G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~  836 (1428)
                      +|.+|.|++.+..++.+.++|..+|  +.++++|...+..  +.+.+|+...++.+....... ..+++.+...+.+|+.
T Consensus       223 ~f~~DL~PklL~~~g~lv~LL~~sg--V~~yLEFk~v~~~--y~~~~G~~~~VPas~~eif~s-~~Lsl~EKr~L~kFl~  297 (650)
T 1vg0_A          223 RFNIDLVSKLLYSRGLLIDLLIKSN--VSRYAEFKNITRI--LAFREGTVEQVPCSRADVFNS-KQLTMVEKRMLMKFLT  297 (650)
T ss_dssp             GCCEESSCCCEESSSHHHHHHHHHT--GGGGCCEEECCEE--EEESSSSEEECCCSHHHHHHC-SSSCHHHHHHHHHHHH
T ss_pred             CeEEeeCCeeeeCCcHHHHHHHHcC--CcceeeEEEccce--EEecCCCEeECCCCHHHHHhC-cCCCHHHHHHHHHHHH
Confidence            3456666666666777889999999  5778899887664  345788888888887776554 4455666677777766


Q ss_pred             HHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchh-HHHHHHH
Q psy10545        837 YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTS-SIYTLIH  915 (1428)
Q Consensus       837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s-~~~~~~~  915 (1428)
                      .+.. +..           .        +..+......++.+|+++++.++.++.++.......+..+.... .+..+..
T Consensus       298 ~~~~-~~~-----------~--------p~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~lal~~~~~~pa~~~l~~i~~  357 (650)
T 1vg0_A          298 FCVE-YEE-----------H--------PDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTSCTVDGLKATKK  357 (650)
T ss_dssp             HHHT-GGG-----------C--------HHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTTC--CCSCBHHHHHHHHHH
T ss_pred             HHHH-hcc-----------C--------hHHHhhhccCCHHHHHHHhCCCHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Confidence            5543 110           0        11122224789999999999999999988753333222211111 1111122


Q ss_pred             Hh---c-c-ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC--CeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        916 AL---E-Y-EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN--NKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       916 ~~---~-~-~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~--~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ++   . . ..+.+++.||++.|+++|++.+...|++|+++++|++|..++  +++++|++.+|+++.||+||++.  ..
T Consensus       358 ~l~sl~~yg~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~  435 (650)
T 1vg0_A          358 FLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SY  435 (650)
T ss_dssp             HHHHTTSSSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GG
T ss_pred             HHHHHHhhccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hh
Confidence            22   1 1 136789999999999999999999999999999999999998  88999998889999999999944  22


Q ss_pred             HHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCc---c-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEe
Q psy10545        989 TYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA---H-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHS 1064 (1428)
Q Consensus       989 ~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1064 (1428)
                           ++.     ...   .+..++ .+.++.+.+++++++..   . ..+.++ ...            ..++.++++.
T Consensus       436 -----lp~-----~~~---~~~~~~-~v~R~i~i~~~pi~~~~~~~~~~~iiiP-~~~------------g~~~~V~i~~  488 (650)
T 1vg0_A          436 -----LSE-----NTC---SRVQYR-QISRAVLITDGSVLRTDADQQVSILTVP-AEE------------PGSFAVRVIE  488 (650)
T ss_dssp             -----BCT-----TTT---TTCCCE-EEEEEEEEESSCSSCCSCCCCCEEEEEC-CSS------------TTSCCEEEEE
T ss_pred             -----cCH-----hHh---cccccc-ceEEEEEEecCCCCCcCCCcceEEEEcc-Ccc------------CCCCCEEEEE
Confidence                 221     111   122333 46788888898865321   1 233332 211            2356788888


Q ss_pred             CCCCCCCCCCCCccEEEEEEe
Q psy10545       1065 PSVTDLSLAPTGCSTFYALIP 1085 (1428)
Q Consensus      1065 ~s~~d~s~ap~G~~~l~v~~~ 1085 (1428)
                      +|. +++.+|+|++++++.+.
T Consensus       489 ~Ss-~~~~cP~G~~Vv~lst~  508 (650)
T 1vg0_A          489 LCS-STMTCMKGTYLVHLTCM  508 (650)
T ss_dssp             ECG-GGTSSCTTCEEEEEEEE
T ss_pred             eCC-CCCCCCCCCEEEEEEee
Confidence            887 88999999999988765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.82  E-value=2.5e-19  Score=220.21  Aligned_cols=344  Identities=9%  Similarity=0.060  Sum_probs=192.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ++|++|+|+|++|+++|+.|+++|++|+|||+.+.+         ..+.+.||+++....+.    ...           
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~---------~~g~~~~g~~l~~~~l~----~lg-----------   61 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN---------RIGDKPCGDAVSKAHFD----KLG-----------   61 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG---------GTTCSCCCCEEEHHHHH----HTT-----------
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC---------CCCcccccccccHHHHH----Hhc-----------
Confidence            358899999999999999999999999999998653         11345677777433221    110           


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcc--cccccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNR--KIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                               .+. .........+.        ...+..+....  ..+..+++++|..|++.|.+++.+.| .++.+++|
T Consensus        62 ---------~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v  123 (453)
T 3atr_A           62 ---------MPY-PKGEELENKIN--------GIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTA  123 (453)
T ss_dssp             ---------CCC-CCGGGEEEEEE--------EEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEE
T ss_pred             ---------CCC-CchHHHHhhhc--------ceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEE
Confidence                     000 00000000000        01111111111  11235788999999999999998888 78889999


Q ss_pred             EEEeC--Ce---EEEc---CCc--EEEeeEEEecCCCCCCC---CC--c---------ceEEEEEEEEEecCCcCCCCce
Q psy10545        468 EIITP--TS---IRIN---NKK--IINANCIIDGRGLKNSQ---FD--G---------IYQIFLGQQWNLSSPHGLDIPI  523 (1428)
Q Consensus       468 ~~i~~--~~---v~l~---~g~--~~~a~lvI~AdG~~S~~---~~--~---------~~q~~~g~~~~~~~~~~~~~~~  523 (1428)
                      +++..  +.   |++.   +|+  +++|++||+|||.+|..   ..  .         ..+.++...+.++.++......
T Consensus       124 ~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (453)
T 3atr_A          124 MKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYL  203 (453)
T ss_dssp             EEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEE
T ss_pred             EEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeE
Confidence            98863  23   4454   665  79999999999999762   11  0         1234444444455444322222


Q ss_pred             EEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCC-HHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhh
Q psy10545        524 IMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLK-IDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKI  602 (1428)
Q Consensus       524 ~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~  602 (1428)
                      .+.+.....++  +|+|++|++++.++++.+........+ .+.+.+.+.++..  .+...+++....+.+|+..... .
T Consensus       204 ~~~~~~~~~~~--g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~p~~~~~~-~  278 (453)
T 3atr_A          204 RIFIDQETSPG--GYWWYFPKGKNKVNVGLGIQGGMGYPSIHEYYKKYLDKYAP--DVDKSKLLVKGGALVPTRRPLY-T  278 (453)
T ss_dssp             EEECCTTTSTT--SCEEEEEEETTEEEEEEEEESSSCCCCHHHHHHHHHHHHCT--TEEEEEEEEEEEEEEECSSCCS-C
T ss_pred             EEEECCCCCCC--cEEEEEECCCCeEEEEEEecCCCCCCCHHHHHHHHHHhhhh--hcCCCeEEeccceeccCCCCCC-c
Confidence            12222111112  368899998888888777665432222 3444444433211  1112234444456788754332 2


Q ss_pred             hhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q psy10545        603 IKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT---TNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLS  679 (1428)
Q Consensus       603 ~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~  679 (1428)
                      ...+|+++||||||.++|++|||++.|+..|..+++++..   ..+.+...+..+.+++.....+.+...+.+.+++...
T Consensus       279 ~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~  358 (453)
T 3atr_A          279 MAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQKL  358 (453)
T ss_dssp             SEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred             eecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3568999999999999999999987666655555555432   1222222222222223333333344455566665543


Q ss_pred             ccccHHHHHHHhhcCChhHhhhh
Q psy10545        680 NSRCHLDIMQYFYTLPDKIIRNF  702 (1428)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~l~~f  702 (1428)
                      ..+. .+.+...+.++...+..+
T Consensus       359 ~~~~-~~~~~~~~~l~~~~~~~~  380 (453)
T 3atr_A          359 SNDD-INYGMKKKIIKEEDLLEA  380 (453)
T ss_dssp             CHHH-HHHHHHTTSSCHHHHHHH
T ss_pred             CcHh-HHHHHHHcCCChHHHHHH
Confidence            3222 322332223555555555

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.82  E-value=3.6e-19  Score=222.83  Aligned_cols=104  Identities=11%  Similarity=0.004  Sum_probs=80.6

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceee--EEEEeCCe------EEEE-EecCCc--EEEcCEEEEcCCHHHHH
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVI--SIYVNNNK------VNKV-HLKNGQ--IFDADIIVSNADIINTY  990 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~--~I~~~~~~------v~~V-~~~~G~--~i~ad~VV~A~~~~~~~  990 (1428)
                      ..+.+.||++.|+++|++.+.+ |+.|+++++|+  +|..++++      .+.| ...+|+  ++.||+||+|+|+..+.
T Consensus       338 ~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          338 EYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             EECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             ceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            3568899999999999998753 67799999999  99886433      3556 456776  79999999999887764


Q ss_pred             HHh----cC-----------------------CCCC-C-------hhHHHHHhhcCCCCceEEEEEee-----cCCc
Q psy10545        991 RNL----LG-----------------------QYAF-G-------KKKYMNLIKKKMSNSLFVIYFGL-----SEQY 1027 (1428)
Q Consensus       991 ~~L----l~-----------------------~~~~-p-------~~~~~~l~~~~~~~s~~~v~l~~-----~~~~ 1027 (1428)
                      ..+    +.                       ++.+ |       ..+.++++++.|. +..||++.+     +++|
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~-~s~Kv~l~~~~~~~~~~f  492 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMA-RSSKVFATVKTAALDQPW  492 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEE-CEEEEEEEEEGGGGGSTT
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcc-cceEEEEEEccccCCCCc
Confidence            311    21                       2224 7       7888999999998 568999999     7774

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.82  E-value=2.6e-20  Score=226.08  Aligned_cols=326  Identities=10%  Similarity=0.020  Sum_probs=183.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .+|++|+|+|++|+++|+.|+++|++|+|+|+.+.+           +...+|.++.+....  ...             
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~-----------~~~~~~~~l~~~~~~--~l~-------------   76 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-----------KPVGAAISVWPNGVK--CMA-------------   76 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC---------------CEEEECHHHHH--HHH-------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC-----------CCcCeeEEECHHHHH--HHH-------------
Confidence            468999999999999999999999999999998755           222233444433221  111             


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccC-c-cEEEcCCCc--ccccccceeeechHHHHHHHHHhccCCeEEecce
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-S-YQVKFPKFN--RKIFSGYYSICSKHLNSYLIRALGINNFLFNNKT  466 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~  466 (1428)
                            .+++|+ .+. ....++..+..+.+. + ....++...  ......++.++|..|++.|.+.+.+ ..++.+++
T Consensus        77 ------~lg~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~  147 (407)
T 3rp8_A           77 ------HLGMGD-IME-TFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR-DSVQFGKR  147 (407)
T ss_dssp             ------HTTCHH-HHH-HHSCCCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG-GGEEESCC
T ss_pred             ------HCCCHH-HHH-hhcCCCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc-CEEEECCE
Confidence                  111221 110 011122233333322 1 122222211  1123568899999999999999977 55788999


Q ss_pred             EEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C-Cc------ceEEEEEEEEEecCCcCCCCceEEecccCCC
Q psy10545        467 VEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F-DG------IYQIFLGQQWNLSSPHGLDIPIIMDATVNQK  532 (1428)
Q Consensus       467 v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~-~~------~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~  532 (1428)
                      |++++.+  .  |++.||++++|++||+|||.+|..   . ..      ..+.++...+.+...........+.+.    
T Consensus       148 v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  223 (407)
T 3rp8_A          148 VTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVG----  223 (407)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEE----
T ss_pred             EEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEEC----
Confidence            9998743  2  677889999999999999999872   1 11      112222222222222111111111111    


Q ss_pred             CCcceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHHHHcCCccceee-------eeeeeeecccCCchhhhh
Q psy10545        533 NDEYHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYAIKNRWKLKNIE-------REEIGSIPIALKNEKIIK  604 (1428)
Q Consensus       533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~Pl~~~~~~~~~  604 (1428)
                        ...++|++|++++...+........ ...+.+.+.+.+.+.+..+...+.+++       ......+|+...  ....
T Consensus       224 --~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  299 (407)
T 3rp8_A          224 --EGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPF--SRLV  299 (407)
T ss_dssp             --TTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCC--SCCE
T ss_pred             --CCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCC--Ccee
Confidence              1246788999988776655544222 222333444555544322111111110       111445666544  2235


Q ss_pred             ccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhccc
Q psy10545        605 FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKF-IINHQKKQRFFCMLNRLFFLSNS  681 (1428)
Q Consensus       605 ~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~f~~~~~  681 (1428)
                      .+|++|||||||.++|++|||++.++..|..|++++....  +....++.|++. ...........+.+.+++.....
T Consensus       300 ~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~--~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~  375 (407)
T 3rp8_A          300 RGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTR--DIAAALREYEAQRCDRVRDLVLKARKRCDITHGKDM  375 (407)
T ss_dssp             ETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             cCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCH
Confidence            6899999999999999999999988888888877776432  334344444332 22222223344445566655443

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.81  E-value=6.7e-20  Score=229.77  Aligned_cols=316  Identities=11%  Similarity=0.013  Sum_probs=184.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +++|+||+|+|++|+++|+.|+++|++|+|||+.+.+           ....++.++........  +            
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~-----------~~~~r~~~l~~~s~~~l--~------------  102 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP-----------VGHDRAGALHIRTVETL--D------------  102 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC-----------CCSSSCCCBCHHHHHHH--H------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC-----------CCCceEEEECHHHHHHH--H------------
Confidence            5679999999999999999999999999999998766           33456666666543311  1            


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCcc---EEEcCCCccccc-ccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY---QVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINN-FLFNN  464 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~  464 (1428)
                             .+++|+ .+......+..    ..+...   .+.+.  ..... ..++++++..|.+.|.+++.+.| .++.+
T Consensus       103 -------~lGl~~-~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~  168 (570)
T 3fmw_A          103 -------LRGLLD-RFLEGTQVAKG----LPFAGIFTQGLDFG--LVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRG  168 (570)
T ss_dssp             -------TTTCHH-HHTTSCCBCSB----CCBTTBCTTCCBGG--GSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBS
T ss_pred             -------HcCChH-HHHhcCcccCC----ceeCCccccccccc--ccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeC
Confidence                   111222 11100000000    001111   11111  11112 24678999999999999998878 67889


Q ss_pred             ceEEEEeCCe----EEE--cCC-cEEEeeEEEecCCCCCCC---------CCcceEEEEEEEEEecCCcCCCCceEEecc
Q psy10545        465 KTVEIITPTS----IRI--NNK-KIINANCIIDGRGLKNSQ---------FDGIYQIFLGQQWNLSSPHGLDIPIIMDAT  528 (1428)
Q Consensus       465 ~~v~~i~~~~----v~l--~~g-~~~~a~lvI~AdG~~S~~---------~~~~~q~~~g~~~~~~~~~~~~~~~~~~~~  528 (1428)
                      ++|++++.+.    |++  .+| .+++|++||+|||.+|..         ...+.+.++...+.++.++ .  ...  + 
T Consensus       169 ~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~-~--~~~--~-  242 (570)
T 3fmw_A          169 HEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE-V--PRR--W-  242 (570)
T ss_dssp             CEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS-S--CCC--C-
T ss_pred             CEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC-c--ceE--E-
Confidence            9999997543    555  577 689999999999999751         1235667776665555444 1  111  1 


Q ss_pred             cCCCCCcceEEEE-eeCCCCce-EEEeEEeccC-----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCch
Q psy10545        529 VNQKNDEYHFIYT-LPLTPNSL-MIEDTRYTKK-----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNE  600 (1428)
Q Consensus       529 ~~~~~~g~~f~~~-lPl~~~~~-~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~  600 (1428)
                       ...+.|  ++++ +|++++.. .+........     ...+.+++.+.+.+.+   +..++..... ....||+....+
T Consensus       243 -~~~~~G--~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~a  316 (570)
T 3fmw_A          243 -ERTPDG--ILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVR---GTPLTLTEPVSWLSRFGDASRQA  316 (570)
T ss_dssp             -CCCCSS--CEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSS---SCCCCCCSCCEEEEEECCCCEEC
T ss_pred             -EecCCE--EEEEEeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHh---hcccccceeeeeeEEeecccccc
Confidence             111123  3455 79987765 4544433221     2234556555554432   4443332223 346788887777


Q ss_pred             hhhhccCcccccccccccccCCCCChHH----HHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHH
Q psy10545        601 KIIKFKKTICVGLRANLLHATTGYSLPI----AIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRL  675 (1428)
Q Consensus       601 ~~~~~~rv~lvGdAA~~vhP~~G~G~~~----a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~  675 (1428)
                      ..+..+|++|+|||||.+||++|||++.    |..|+..|+..+. +  .+...+++.|++ +.....+.....+.+.++
T Consensus       317 ~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~-g--~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l  393 (570)
T 3fmw_A          317 KRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVR-G--WGSEELLDTYHDERHPVAERVLLNTRAQLAL  393 (570)
T ss_dssp             SCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHH-S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHc-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666799999999999999999999774    5555555554432 2  234445555544 333334444455556666


Q ss_pred             hhhc
Q psy10545        676 FFLS  679 (1428)
Q Consensus       676 f~~~  679 (1428)
                      |...
T Consensus       394 ~~~~  397 (570)
T 3fmw_A          394 MRPD  397 (570)
T ss_dssp             SCSC
T ss_pred             hcCC
Confidence            6553

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.81  E-value=6.8e-19  Score=217.89  Aligned_cols=279  Identities=12%  Similarity=0.072  Sum_probs=170.0

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .+.+++|+|+||+|+++|+.|+++|++|+|||+.+.+           ....++.++.+..+...  .            
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~-----------~~~~r~~~l~~~~~~~l--~------------   65 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR-----------TGESRGLGFTARTMEVF--D------------   65 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC-----------CCCCCSEEECHHHHHHH--H------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCceeEECHHHHHHH--H------------
Confidence            4468899999999999999999999999999998766           33456777776543311  1            


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccc-cceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFS-GYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                             .+++|+ .+...  .+...   ..+....+.+..  ..... ..+++++..+.+.|.+.+.+.| .++.+++|
T Consensus        66 -------~lGl~~-~~~~~--~~~~~---~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v  130 (499)
T 2qa2_A           66 -------QRGILP-AFGPV--ETSTQ---GHFGGRPVDFGV--LEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTV  130 (499)
T ss_dssp             -------HTTCGG-GGCSC--CEESE---EEETTEEEEGGG--STTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEE
T ss_pred             -------HCCCHH-HHHhc--ccccc---ceecceeccccc--CCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence                   111222 11100  00000   011111222211  11112 3588999999999999998877 78889999


Q ss_pred             EEEeCCe----EEEcCCc---EEEeeEEEecCCCCCCC---C----C--cceEEEEEEEEEecCCcCCCCceEEecccCC
Q psy10545        468 EIITPTS----IRINNKK---IINANCIIDGRGLKNSQ---F----D--GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       468 ~~i~~~~----v~l~~g~---~~~a~lvI~AdG~~S~~---~----~--~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      ++++.+.    |++.++.   +++|++||+|||.+|..   .    .  .+.+.++...+.++.+..  . ..+.+.   
T Consensus       131 ~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~---  204 (499)
T 2qa2_A          131 RALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITP--R-PIGETV---  204 (499)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCCCC--E-EEEEEE---
T ss_pred             EEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECCCCc--c-eEEEEC---
Confidence            9997432    5666664   79999999999999751   1    1  133444555544432221  1 111111   


Q ss_pred             CCCcceEEEEeeCCCCceEEEeEEeccC-----CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhcc
Q psy10545        532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK-----PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFK  606 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~  606 (1428)
                      . .  ++++++|++++..++........     ...+.+++.+.+.+.+   +..+..........+++....+.....+
T Consensus       205 ~-~--g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~g  278 (499)
T 2qa2_A          205 P-L--GMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLT---GQDISHGEPVWVSAFGDPARQVSAYRRG  278 (499)
T ss_dssp             T-T--EEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHH---SCCCTTCEEEEEEEECCCEEECSCSEET
T ss_pred             C-C--eEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHh---CCCCCccceeEEEEEeCCcEEcccccCC
Confidence            1 2  35788999887665544332211     2245677777777665   4332211111124566655545544568


Q ss_pred             CcccccccccccccCCCCChHHHH----HHHHHHHhhc
Q psy10545        607 KTICVGLRANLLHATTGYSLPIAI----QLAENIAKYS  640 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~~a~----~la~~l~~~~  640 (1428)
                      ||+|+|||||.++|++|||+|.++    .|+..|+..+
T Consensus       279 rv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l  316 (499)
T 2qa2_A          279 RVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVV  316 (499)
T ss_dssp             TEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999987544    4555555443

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.80  E-value=9.1e-19  Score=216.78  Aligned_cols=279  Identities=13%  Similarity=0.054  Sum_probs=168.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      .++|++|+|+||+|+++|+.|+++|++|+|||+.+.+           +...+|.++.+..+.  ...            
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~-----------~~~~r~~~l~~~~~~--~l~------------   64 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER-----------TGESRGLGFTARTME--VFD------------   64 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC------------CCCCCSEEECHHHHH--HHH------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC-----------CCCCCcceECHHHHH--HHH------------
Confidence            4568999999999999999999999999999998766           344567777765433  111            


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccc-ccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                             .+++|+ .+...  .+...   ..+....+.+..  .... ...+++++..+++.|.+.+.+.| .++.+++|
T Consensus        65 -------~lGl~~-~~~~~--~~~~~---~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v  129 (500)
T 2qa1_A           65 -------QRGILP-RFGEV--ETSTQ---GHFGGLPIDFGV--LEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEV  129 (500)
T ss_dssp             -------TTTCGG-GGCSC--CBCCE---EEETTEEEEGGG--STTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEE
T ss_pred             -------HCCCHH-HHHhc--ccccc---ccccceeccccc--CCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEE
Confidence                   111222 11100  00000   011111222211  1111 23588999999999999998877 68889999


Q ss_pred             EEEeCC--e--EEEcCCc---EEEeeEEEecCCCCCCC---C----C--cceEEEEEEEEEecCCcCCCCceEEecccCC
Q psy10545        468 EIITPT--S--IRINNKK---IINANCIIDGRGLKNSQ---F----D--GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ  531 (1428)
Q Consensus       468 ~~i~~~--~--v~l~~g~---~~~a~lvI~AdG~~S~~---~----~--~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~  531 (1428)
                      ++++.+  .  |++.++.   +++|++||+|||.+|..   .    .  .+.+.++...++++.+..  . ..+.+.   
T Consensus       130 ~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~---  203 (500)
T 2qa1_A          130 LSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQP--R-MIGETL---  203 (500)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCCCCC--E-EEEEEE---
T ss_pred             EEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCCCCC--c-eEEEEC---
Confidence            999643  3  5565664   79999999999999751   1    1  233445555544432221  1 111111   


Q ss_pred             CCCcceEEEEeeCCCCceEEEeEEeccC-----CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhcc
Q psy10545        532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK-----PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFK  606 (1428)
Q Consensus       532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~  606 (1428)
                      . .  ++++++|++++..++........     ...+.+++.+.+.+++   +..+..........|++....+.....+
T Consensus       204 ~-~--g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~g  277 (500)
T 2qa1_A          204 P-G--GMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLT---GDDIAHAEPVWVSAFGNATRQVTEYRRG  277 (500)
T ss_dssp             T-T--EEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHH---SCCCTTSEEEEEEEEECCEEECSCSEET
T ss_pred             C-C--cEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhc---CCCCCccceeEEEEeccCcEEccccccC
Confidence            1 2  35788999887665544332211     1235677777777665   3322210111123566655445444568


Q ss_pred             CcccccccccccccCCCCChHHHHH----HHHHHHhhc
Q psy10545        607 KTICVGLRANLLHATTGYSLPIAIQ----LAENIAKYS  640 (1428)
Q Consensus       607 rv~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~  640 (1428)
                      ||+|+|||||.++|++|||+|.+++    |+..|+..+
T Consensus       278 rv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~  315 (500)
T 2qa1_A          278 RVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVV  315 (500)
T ss_dssp             TEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999875544    555555443

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.77  E-value=3.7e-19  Score=211.53  Aligned_cols=248  Identities=15%  Similarity=0.133  Sum_probs=165.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEc-ccccccCCc-hHHHHHHHHhcccccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFD-AGPTVITDP-NSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d-~G~~~i~~~-~~~~~l~~~lG~~l~~~l  788 (1428)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++.+....|+.++ .|++++... ..+.++++++|..     
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~-----   75 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVEF-----   75 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSCB-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhhh-----
Confidence            379999999999999999999999999999999999999999999999995 999998753 3455667766631     


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                        .+..... ..+.+|+.+.++.+...+...+....   ...+..++....       ...                   
T Consensus        76 --~~~~~~~-~~~~~g~~~~~p~~~~~~~~l~~~~~---~~~~~~~l~~~~-------~~~-------------------  123 (367)
T 1i8t_A           76 --NRFTNSP-LAIYKDKLFNLPFNMNTFHQMWGVKD---PQEAQNIINAQK-------KKY-------------------  123 (367)
T ss_dssp             --CCCCCCC-EEEETTEEEESSBSHHHHHHHHCCCC---HHHHHHHHHHHT-------TTT-------------------
T ss_pred             --hhccccc-eEEECCeEEEcCCCHHHHHHHhccCC---HHHHHHHHHHHh-------hcc-------------------
Confidence              1112222 23446777888776544332222111   111111111110       000                   


Q ss_pred             hhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHHHH-HHH---hcc--cccee--eecCchHHHHHHHHH
Q psy10545        869 KIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIYTL-IHA---LEY--EWGIW--FPKGGVGALIKALIK  939 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~~~-~~~---~~~--~~g~~--~~~gG~~~l~~~L~~  939 (1428)
                      ......++.+|+.+.+..+..+.++. .....++.+|.+.++.+.. +..   ...  ..+.|  +|+||+++++++|++
T Consensus       124 ~~~~~~s~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~  203 (367)
T 1i8t_A          124 GDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE  203 (367)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT
T ss_pred             CCCCCccHHHHHHHHHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhc
Confidence            01136788999988877777777765 3456678888887753221 100   011  12334  899999999999976


Q ss_pred             HHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEE
Q psy10545        940 LFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVI 1019 (1428)
Q Consensus       940 ~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v 1019 (1428)
                           |++|++|++|++|..   +   |      .+.+|+||+|+|+..++. +            .+.++.|. +...+
T Consensus       204 -----g~~i~l~~~V~~i~~---~---v------~~~~D~VV~a~p~~~~~~-~------------~l~~l~y~-s~~~v  252 (367)
T 1i8t_A          204 -----GVDVKLGIDFLKDKD---S---L------ASKAHRIIYTGPIDQYFD-Y------------RFGALEYR-SLKFE  252 (367)
T ss_dssp             -----TSEEECSCCGGGSHH---H---H------HTTEEEEEECSCHHHHTT-T------------TTCCCCEE-EEEEE
T ss_pred             -----CCEEEeCCceeeech---h---h------hccCCEEEEeccHHHHHH-H------------hhCCCCCc-eEEEE
Confidence                 689999999998851   1   2      246899999999887653 1            24466776 67778


Q ss_pred             EEeecCC
Q psy10545       1020 YFGLSEQ 1026 (1428)
Q Consensus      1020 ~l~~~~~ 1026 (1428)
                      .+.++++
T Consensus       253 ~~~~d~~  259 (367)
T 1i8t_A          253 TERHEFP  259 (367)
T ss_dssp             EEEESSS
T ss_pred             EEEeccc
Confidence            8888876

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.77  E-value=2e-19  Score=216.56  Aligned_cols=295  Identities=11%  Similarity=0.057  Sum_probs=181.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcceEEEe--CCeEE-cccccccCC-chHHHHHHHHhccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRAYVYKQ--DGFIF-DAGPTVITD-PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~~s~~~--~G~~~-d~G~~~i~~-~~~~~~l~~~lG~~l~  785 (1428)
                      ++||+|||||++||+||++|+++ |++|+|+|+++++||+++|...  +|+.+ +.|++++.. ...+.++++++|. . 
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~-~-   84 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTD-F-   84 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCC-B-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhh-h-
Confidence            68999999999999999999999 9999999999999999999998  78887 599998874 3456677777774 1 


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP  865 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1428)
                           .+.... ...+.+|+.+.++.+...+...+....  .......+       ........                
T Consensus        85 -----~~~~~~-~~~~~~G~~~~~p~~~~~~~~l~~~~~--~~~~~~~~-------l~~~~~~~----------------  133 (399)
T 1v0j_A           85 -----TDYRHR-VFAMHNGQAYQFPMGLGLVSQFFGKYF--TPEQARQL-------IAEQAAEI----------------  133 (399)
T ss_dssp             -----CCCCCC-EEEEETTEEEEESSSHHHHHHHHTSCC--CHHHHHHH-------HHHHGGGS----------------
T ss_pred             -----hccccc-eEEEECCEEEeCCCCHHHHHHHhcccC--CHHHHHHH-------HHHHhhcc----------------
Confidence                 111222 234457888888776543322221110  01111111       11100000                


Q ss_pred             HHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH--HHHHh--ccc--ccee--eecCchHHHHHH
Q psy10545        866 KLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT--LIHAL--EYE--WGIW--FPKGGVGALIKA  936 (1428)
Q Consensus       866 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~--~~~~~--~~~--~g~~--~~~gG~~~l~~~  936 (1428)
                         ......++.+|+.+.+.++..+.++.. ....++.+|.+.++...  +....  ...  ...+  +|+||+++++++
T Consensus       134 ---~~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~  210 (399)
T 1v0j_A          134 ---DTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQN  210 (399)
T ss_dssp             ---CTTC----CCHHHHHHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHH
T ss_pred             ---CCCCcccHHHHHHHHHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHH
Confidence               011356788888888877777777653 34566778877765321  10000  111  1123  889999999999


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEE-EcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCc
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIF-DADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNS 1015 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i-~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s 1015 (1428)
                      |++   +.|++|++|++|++|..+      |   +  ++ .||+||+|+|+..+.. +            .+.++.|. +
T Consensus       211 l~~---~~g~~I~l~~~V~~I~~~------v---~--~~~~aD~VI~t~p~~~l~~-~------------~l~~l~y~-s  262 (399)
T 1v0j_A          211 MAA---DHRIEVRLNTDWFDVRGQ------L---R--PGSPAAPVVYTGPLDRYFD-Y------------AEGRLGWR-T  262 (399)
T ss_dssp             HTC---STTEEEECSCCHHHHHHH------H---T--TTSTTCCEEECSCHHHHTT-T------------TTCCCCEE-E
T ss_pred             HHh---cCCeEEEECCchhhhhhh------h---h--hcccCCEEEECCcHHHHHh-h------------hhCCCCcc-e
Confidence            976   457999999999999632      2   1  35 7999999999887654 2            23456666 5


Q ss_pred             eEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCC-CCCccEEEEEEe
Q psy10545       1016 LFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA-PTGCSTFYALIP 1085 (1428)
Q Consensus      1016 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~a-p~G~~~l~v~~~ 1085 (1428)
                      +..+.+.++.+.- .+...++++.. +              .+...++..++..|..+ |+++..++...+
T Consensus       263 ~~~~~~~~~~~~~-~~~~~~~~~~~-~--------------~~~~ri~~~~~~~~~~~~~~~~~~v~~e~~  317 (399)
T 1v0j_A          263 LDFEVEVLPIGDF-QGTAVMNYNDL-D--------------VPYTRIHEFRHFHPERDYPTDKTVIMREYS  317 (399)
T ss_dssp             EEEEEEEESSSCS-SSSSEEEECCT-T--------------SSCSEEEEGGGGCTTSCCCSSCEEEEEEEE
T ss_pred             EEEEEEEEccccC-CCCeEEEeCCC-C--------------CCcceeEeecCCCCCCcCCCCCeEEEEeec
Confidence            6677888876521 12234444321 0              11122444555666665 556666665543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.76  E-value=7.3e-19  Score=212.73  Aligned_cols=282  Identities=12%  Similarity=0.053  Sum_probs=161.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+|++|+++|+.|+++|++|+|+|+.+.+           ....++.++.+..... +..              
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~-----------~~~~~~~~l~~~~~~~-l~~--------------   60 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE-----------RAINGADLLKPAGIRV-VEA--------------   60 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC--------------CCCCEECHHHHHH-HHH--------------
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC-----------CccCceeeECchHHHH-HHH--------------
Confidence            57899999999999999999999999999998654           2334555555543221 111              


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~  468 (1428)
                            +++|+ .+. ....++..+..+...+ ....++.........++.++|..|.+.|.+++.+. | .++.+++|+
T Consensus        61 ------~g~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~  132 (399)
T 2x3n_A           61 ------AGLLA-EVT-RRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIE  132 (399)
T ss_dssp             ------TTCHH-HHH-HTTCEEECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEE
T ss_pred             ------cCcHH-HHH-HhCCCcceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEE
Confidence                  01111 000 0001111111111111 12222222222234568899999999999999887 7 688899999


Q ss_pred             EEeCC------eEEEcCCcEEEeeEEEecCCCCCCC---C------C--cceE--EEEEEEEEecCCcCCCCceEEeccc
Q psy10545        469 IITPT------SIRINNKKIINANCIIDGRGLKNSQ---F------D--GIYQ--IFLGQQWNLSSPHGLDIPIIMDATV  529 (1428)
Q Consensus       469 ~i~~~------~v~l~~g~~~~a~lvI~AdG~~S~~---~------~--~~~q--~~~g~~~~~~~~~~~~~~~~~~~~~  529 (1428)
                      +++.+      .|++.+|.+++||+||+|||.+|..   .      .  .+.+  .++...+..+.|+.    . +.+. 
T Consensus       133 ~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~-~~~~-  206 (399)
T 2x3n_A          133 AVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERN----R-LYVD-  206 (399)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHHHCE----E-EEEC-
T ss_pred             EEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEecCCCCCc----c-EEEc-
Confidence            98642      4566788899999999999999751   1      1  2233  33332222222221    1 2222 


Q ss_pred             CCCCCcceEEEEeeCCCCceEEEeEEeccC-----CCCCHHHHHHHHHHHHHHcCCcc--ceeeee---eeeeecccC-C
Q psy10545        530 NQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-----PFLKIDMLKKSIKDYAIKNRWKL--KNIERE---EIGSIPIAL-K  598 (1428)
Q Consensus       530 ~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~---~~~~~Pl~~-~  598 (1428)
                         +. .+++|++|+++..+.+........     ...+.+.+.    +.+..++..+  +.+...   ....+|+.. .
T Consensus       207 ---~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
T 2x3n_A          207 ---SQ-GGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLR----RRLQRFVGDESAEAIAAVTGTSRFKGIPIGYL  278 (399)
T ss_dssp             ---TT-SCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSHHHH----HHHHTTCCGGGHHHHHTCCCSTTCEECCCCCE
T ss_pred             ---CC-CcEEEEEEcCCCEEEEEEEeCccccccccccCCHHHHH----HHHhhcCCcchhhHHhcCCccceEEechhhcc
Confidence               10 235778898775544322111110     001223333    3333345555  333211   235678876 3


Q ss_pred             chhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        599 NEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       599 ~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      .......+|+++||||||.++|++|||++.++..|..|++++.
T Consensus       279 ~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~  321 (399)
T 2x3n_A          279 NLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALD  321 (399)
T ss_dssp             ECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHH
Confidence            3333456899999999999999999998766665555555544

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.76  E-value=9.6e-18  Score=209.08  Aligned_cols=290  Identities=14%  Similarity=0.113  Sum_probs=159.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|+||+|+|++|+++|+.|+++|++|+|||+.+.+           .. ..|.++.+......+..             
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~-----------~~-~~g~~~~~~~~~~~l~~-------------   61 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP-----------RH-QIGESLLPATVHGICAM-------------   61 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS-----------CC-CSCCBCCHHHHTTHHHH-------------
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC-----------CC-CCCcccCcchHHHHHHH-------------
Confidence            468899999999999999999999999999998744           11 12444544321100000             


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccC----ccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecc
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWP----SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNK  465 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~  465 (1428)
                             +++|+ .+.. ...+........|.    .+.+.+..........+++++|..|.+.|.+.+.+.| .++.++
T Consensus        62 -------lgl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~  132 (512)
T 3e1t_A           62 -------LGLTD-EMKR-AGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERH  132 (512)
T ss_dssp             -------TTCHH-HHHT-TTCCEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSC
T ss_pred             -------hCcHH-HHHH-cCCccccCceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCC
Confidence                   00110 0000 00011111111111    1233343322233446788999999999999998888 688899


Q ss_pred             eEEEEeCC--e---EEE--cCCc--EEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEec--CCcCCCCceEE
Q psy10545        466 TVEIITPT--S---IRI--NNKK--IINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLS--SPHGLDIPIIM  525 (1428)
Q Consensus       466 ~v~~i~~~--~---v~l--~~g~--~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~--~~~~~~~~~~~  525 (1428)
                      +|+++..+  .   |++  .+|.  +++|++||+|||.+|..   ..      .+.+.++...+...  .+.......+.
T Consensus       133 ~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  212 (512)
T 3e1t_A          133 EVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILS  212 (512)
T ss_dssp             EEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEE
T ss_pred             EEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEE
Confidence            99988642  2   444  3564  79999999999999762   11      12234443333321  11111111111


Q ss_pred             ecccCCCCCcceEEEEeeCCCCceEEEeEEeccCC---CCCH-HHHHHHHHHH--HHH-cCCccceeeeeeeeeecccCC
Q psy10545        526 DATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKP---FLKI-DMLKKSIKDY--AIK-NRWKLKNIEREEIGSIPIALK  598 (1428)
Q Consensus       526 ~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~---~~~~-~~~~~~l~~~--~~~-~~~~~~~~~~~~~~~~Pl~~~  598 (1428)
                      .+.      ..+|+|++|+++++.+++........   .... +.+++.+...  +.. ... ...+.....+.+++...
T Consensus       213 ~~~------~~G~~~~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~-~~~~~~~~~~~i~~~~~  285 (512)
T 3e1t_A          213 AAF------QDGWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAP-ATRVTTGDYGEIRIRKD  285 (512)
T ss_dssp             EEE------TTEEEEEEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTT-CEECCSSTTSSCEEEES
T ss_pred             EEe------CCceEEEEEeCCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHhc-Cccccccccccceeecc
Confidence            111      13478999999988777666543321   1112 2333222210  000 000 00011111122332211


Q ss_pred             ---chhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        599 ---NEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       599 ---~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                         .......+|+++||||||.+||++|||++.++..|..+++++.
T Consensus       286 ~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~  331 (512)
T 3e1t_A          286 YSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAIN  331 (512)
T ss_dssp             CCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHH
Confidence               1222345899999999999999999998877766666665554

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.75  E-value=4.2e-18  Score=203.63  Aligned_cols=245  Identities=16%  Similarity=0.186  Sum_probs=165.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--CCeEE-cccccccCC-chHHHHHHHHhccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--DGFIF-DAGPTVITD-PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--~G~~~-d~G~~~i~~-~~~~~~l~~~lG~~l~  785 (1428)
                      +++||+|||||++||++|+.|+++|++|+|+|+++++||++++...  .|+.+ |.|++++.. ...+.++++++|.   
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~---   78 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE---   78 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC---
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhh---
Confidence            4579999999999999999999999999999999999999999988  78876 999999874 3455677777763   


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP  865 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1428)
                          +.+..... ..+.+|+.+.++.+...+...+....  .......++.       .    .....            
T Consensus        79 ----~~~~~~~~-~~~~~g~~~~~P~~~~~~~~l~~~~~--~~~~~~~~l~-------~----~~~~~------------  128 (384)
T 2bi7_A           79 ----MMPYVNRV-KATVNGQVFSLPINLHTINQFFSKTC--SPDEARALIA-------E----KGDST------------  128 (384)
T ss_dssp             ----EEECCCCE-EEEETTEEEEESCCHHHHHHHTTCCC--CHHHHHHHHH-------H----HSCCS------------
T ss_pred             ----hcccccce-EEEECCEEEECCCChhHHHHHhcccC--CHHHHHHHHH-------H----hhhcc------------
Confidence                22222222 23456777888777644322221110  1111111111       0    00000            


Q ss_pred             HHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHHHH-HH--H-hcc--cccee--eecCchHHHHHH
Q psy10545        866 KLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIYTL-IH--A-LEY--EWGIW--FPKGGVGALIKA  936 (1428)
Q Consensus       866 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~~~-~~--~-~~~--~~g~~--~~~gG~~~l~~~  936 (1428)
                          .....++.+|+.+.+.++..+.++. .....++.+|.+.++.... +.  + ...  ..+.+  +|+||+++++++
T Consensus       129 ----~~~~~sl~e~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~  204 (384)
T 2bi7_A          129 ----IADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKS  204 (384)
T ss_dssp             ----CSSCCBHHHHHHHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHH
T ss_pred             ----CCCCcCHHHHHHHhhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHH
Confidence                0136789999998888777777766 4556778888877753210 10  0 010  12334  899999999999


Q ss_pred             HHHHHHHcCcEEEeCceee-EEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCc
Q psy10545        937 LIKLFQNLGGNLILNSQVI-SIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNS 1015 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~-~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s 1015 (1428)
                      |++   +.|++|++|++|+ +|..                .+|+||+|+|+..++..+             +.++.|. +
T Consensus       205 l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p~~~~~~~~-------------lg~l~y~-s  251 (384)
T 2bi7_A          205 ILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGPLDAFYGYQ-------------YGRLGYR-T  251 (384)
T ss_dssp             HHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSCHHHHTTTT-------------TCCCCEE-E
T ss_pred             HHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCCHHHHHHhh-------------cCCCCcc-e
Confidence            976   3589999999999 7841                299999999998876521             3456676 5


Q ss_pred             eEEEEEeec
Q psy10545       1016 LFVIYFGLS 1024 (1428)
Q Consensus      1016 ~~~v~l~~~ 1024 (1428)
                      ...+++.++
T Consensus       252 ~~~v~~~~d  260 (384)
T 2bi7_A          252 LDFKKFTYQ  260 (384)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEeC
Confidence            667777877

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.75  E-value=1.2e-17  Score=209.91  Aligned_cols=288  Identities=12%  Similarity=0.049  Sum_probs=168.1

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|++|+|+|++|+++|+.|+++|++|+|||+.+.+           ....++.++........- ..            
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~-----------~~~~~~~~l~~~~~~~l~-~l------------   60 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL-----------SPYPRAAGQNPRTMELLR-IG------------   60 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC-----------CCCCCSCCBCHHHHHHHH-HT------------
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC-----------CCCCccceECHHHHHHHH-Hc------------
Confidence            457899999999999999999999999999998765           334566677665432111 10            


Q ss_pred             CCCCCceeeeccCCcCcccccccccc------cccccCccEE-----EcCC----CcccccccceeeechHHHHHHHHHh
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPL------ITYSWPSYQV-----KFPK----FNRKIFSGYYSICSKHLNSYLIRAL  455 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~  455 (1428)
                              ++|+ .+.. ...++..+      ......+..+     .++.    .....+..++.+++..|.+.|.+++
T Consensus        61 --------Gl~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a  130 (535)
T 3ihg_A           61 --------GVAD-EVVR-ADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQA  130 (535)
T ss_dssp             --------TCHH-HHHH-SCCSSCTTSCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHH
T ss_pred             --------CCHH-HHHh-hCCCcccccceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHH
Confidence                    1111 0000 00000000      0001111111     1110    0011233578899999999999999


Q ss_pred             ccCC-eEEecceEEEEe--CC----e--EEEcCC---cEEEeeEEEecCCCCCC---CC--C----cceEEEEEEEEEec
Q psy10545        456 GINN-FLFNNKTVEIIT--PT----S--IRINNK---KIINANCIIDGRGLKNS---QF--D----GIYQIFLGQQWNLS  514 (1428)
Q Consensus       456 ~~~~-~~~~~~~v~~i~--~~----~--v~l~~g---~~~~a~lvI~AdG~~S~---~~--~----~~~q~~~g~~~~~~  514 (1428)
                      .+.| .++.+++|++++  .+    .  +++.++   .+++|++||+|||.+|.   .+  .    .+.+..+.+.+..+
T Consensus       131 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~  210 (535)
T 3ihg_A          131 RKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDAD  210 (535)
T ss_dssp             HHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECC
T ss_pred             HhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEecc
Confidence            8878 788899999986  33    4  455555   68999999999999975   11  1    23445555555544


Q ss_pred             CCcCC--CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-----CCCCHHHHHHHHHHHHHHcCCccceeee
Q psy10545        515 SPHGL--DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-----PFLKIDMLKKSIKDYAIKNRWKLKNIER  587 (1428)
Q Consensus       515 ~~~~~--~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~  587 (1428)
                      .++..  ....++.+..  . .+  ..+++|++++..+.....+...     ...+.+.+.+.+.+.+   +.....+..
T Consensus       211 ~~~~~~~~~~~~~~~~~--p-~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~---~~~~~~~~~  282 (535)
T 3ihg_A          211 LSGIMEPGTTGWYYLHH--P-EF--KGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLAL---DAPEVKPEL  282 (535)
T ss_dssp             GGGTSCTTCCEEEEEEC--S-SC--EEEEEECSSTTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHH---TCSSCCCEE
T ss_pred             ChhhccCCceEEEEEEC--C-Cc--eEEEEEecCCCEEEEEEeeCccccCccccCCHHHHHHHHHHHh---CCCCCceeE
Confidence            33321  1112222211  1 22  2456787764333222222221     1234567777777665   433333333


Q ss_pred             eeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhc
Q psy10545        588 EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  640 (1428)
Q Consensus       588 ~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~  640 (1428)
                      .....+|+....+.....+|++|+|||||.++|++|||++.++..|..|+..+
T Consensus       283 ~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~L  335 (535)
T 3ihg_A          283 VDIQGWEMAARIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKL  335 (535)
T ss_dssp             EEEEEEEEEEEEESCSEETTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEeeEeeeeEEEECccccCCEEEEecccccCCCccCCccccccccHHHHHHHH
Confidence            33556777666666556699999999999999999999775544444444433

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.73  E-value=3.3e-17  Score=199.79  Aligned_cols=289  Identities=13%  Similarity=0.026  Sum_probs=162.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+|++|+++|+.|+++|++|+|+|+.+.+           + ..+|.++.+..... +...             
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~-----------~-~~~g~~~~~~~~~~-l~~~-------------   59 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP-----------R-FVIGESLLPRCMEH-LDEA-------------   59 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS-----------C-CCSCCBCCGGGHHH-HHHT-------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC-----------C-CcccCcccHhHHHH-HHHc-------------
Confidence            57899999999999999999999999999998654           1 12333443322110 0000             


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCc--cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS--YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE  468 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~  468 (1428)
                             ++|+ .+.... .+........|..  ..+.+...........+.++|..|++.|.+.+.+.| .++.+++|+
T Consensus        60 -------g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~  130 (421)
T 3nix_A           60 -------GFLD-AVKAQG-FQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVT  130 (421)
T ss_dssp             -------TCHH-HHHHTT-CEEECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEE
T ss_pred             -------CChH-HHHHcC-CcccCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEE
Confidence                   0010 000000 0000001111222  223333222222345788999999999999998878 688899999


Q ss_pred             EEeCC--e----EEEcCCc--EEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcC--CCCceEEeccc
Q psy10545        469 IITPT--S----IRINNKK--IINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHG--LDIPIIMDATV  529 (1428)
Q Consensus       469 ~i~~~--~----v~l~~g~--~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~--~~~~~~~~~~~  529 (1428)
                      ++..+  .    +...+|.  +++|++||+|||.+|..   .      ..+.+.++...+....+..  ....+.+.+..
T Consensus       131 ~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (421)
T 3nix_A          131 DIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVV  210 (421)
T ss_dssp             EEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEE
T ss_pred             EEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEe
Confidence            88642  2    3446777  69999999999998741   1      1123344444433322211  11111222211


Q ss_pred             CCCCCcceEEEEeeCCCCceEEEeEEeccCC---CCCHHHHHHHHHHHHHHcCCccc---eee-eeeeeeecccCCchhh
Q psy10545        530 NQKNDEYHFIYTLPLTPNSLMIEDTRYTKKP---FLKIDMLKKSIKDYAIKNRWKLK---NIE-REEIGSIPIALKNEKI  602 (1428)
Q Consensus       530 ~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~---~~~-~~~~~~~Pl~~~~~~~  602 (1428)
                      .   .+.+|+|++|+++++++++.+......   ..+.+++   +.+++........   ... ......+|........
T Consensus       211 ~---~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~---l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  284 (421)
T 3nix_A          211 H---KPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEER---MRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASK  284 (421)
T ss_dssp             E---ETTEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHH---HHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESC
T ss_pred             C---CCCEEEEEEEECCCCEEEEEEecHHHhhhcCCCHHHH---HHHHHHhCcHHHHHHhcCccccCceeecccceeeee
Confidence            1   234578999999998888776544321   1133333   2333322121111   111 1122344544443333


Q ss_pred             hhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        603 IKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       603 ~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ...+++++||||||.++|++|||++.|+..|..+++++.
T Consensus       285 ~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~  323 (421)
T 3nix_A          285 LYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAV  323 (421)
T ss_dssp             SEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCEEEecccccccCCcccccHHHHHHHHHHHHHHHH
Confidence            456899999999999999999998866666666665554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.71  E-value=1.8e-16  Score=202.33  Aligned_cols=322  Identities=11%  Similarity=0.056  Sum_probs=174.9

Q ss_pred             HHHHHHhcCCchHHHHHHHHhh-----cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEE
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQT-----AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVL  385 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~-----~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~  385 (1428)
                      +.|++|+|+||+|+++|+.|++     .|++|+|||+++.+           ....++.|+.+..+.  +..        
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~-----------~~~gra~~l~~~tle--~l~--------   66 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK-----------VYNGQADGLQCRTLE--SLK--------   66 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC-----------CCSCSCCEECHHHHH--HHH--------
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC-----------CCCCceeEEChHHHH--HHH--------
Confidence            3578999999999999999999     99999999998755           223345566655332  111        


Q ss_pred             EeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEE----EcCCCcccc-cccceeeechHHHHHHHHHhccCC
Q psy10545        386 LLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQV----KFPKFNRKI-FSGYYSICSKHLNSYLIRALGINN  459 (1428)
Q Consensus       386 ~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~  459 (1428)
                                 .+++|+ .+. ....++..+..+.... ..+    .++...... ....+++++..+++.|.+.+.+.|
T Consensus        67 -----------~lGl~~-~l~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g  133 (665)
T 1pn0_A           67 -----------NLGLAD-KIL-SEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEIS  133 (665)
T ss_dssp             -----------TTTCHH-HHH-TTCBCCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHH
T ss_pred             -----------HCCCHH-HHH-HhccccceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcC
Confidence                       111221 010 0111222222222110 111    121111111 224577999999999999997643


Q ss_pred             ----eEEecceEEEEeCC----------e--EEEc------------------------------------------CC-
Q psy10545        460 ----FLFNNKTVEIITPT----------S--IRIN------------------------------------------NK-  480 (1428)
Q Consensus       460 ----~~~~~~~v~~i~~~----------~--v~l~------------------------------------------~g-  480 (1428)
                          .+..+++|++++.+          .  |++.                                          +| 
T Consensus       134 ~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~  213 (665)
T 1pn0_A          134 DTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGE  213 (665)
T ss_dssp             TTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTC
T ss_pred             CCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCc
Confidence                58888999888532          2  3332                                          35 


Q ss_pred             -cEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCC-ceEEecccCCCCCcceEEEEeeCCCCce
Q psy10545        481 -KIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDI-PIIMDATVNQKNDEYHFIYTLPLTPNSL  549 (1428)
Q Consensus       481 -~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~f~~~lPl~~~~~  549 (1428)
                       .+++|++||+|||.+|..   +  .    .+.+....+.+.......... ...+..    .  ..++++++|++++..
T Consensus       214 ~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p~~~~~~~~~~----~--~~g~~~~~P~~~~~~  287 (665)
T 1pn0_A          214 IETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHS----A--ESGSIMIIPRENNLV  287 (665)
T ss_dssp             EEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCTTTTSEEEEEC----S--SSCEEEEEECSTTCE
T ss_pred             eEEEEeCEEEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCCCcceEEEEEe----C--CCceEEEEEcCCCEE
Confidence             469999999999999861   1  1    122222223332222221111 111111    0  123467889988765


Q ss_pred             EEEeEEecc--------CCCCCHHHHHHHHHHHHHHcCCccceeeeee-eeeecccCCchhhhh-ccCcccccccccccc
Q psy10545        550 MIEDTRYTK--------KPFLKIDMLKKSIKDYAIKNRWKLKNIEREE-IGSIPIALKNEKIIK-FKKTICVGLRANLLH  619 (1428)
Q Consensus       550 ~v~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~Pl~~~~~~~~~-~~rv~lvGdAA~~vh  619 (1428)
                      .+.......        ....+.+++.+.+.+.+   +....++.... ...+|+....+..+. .+||+|+|||||.++
T Consensus       288 r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~  364 (665)
T 1pn0_A          288 RFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIF---HPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHS  364 (665)
T ss_dssp             EEEEEECC----------CCCCHHHHHHHHHHHH---TTSCCEEEEEEEEEEEEEEEEECSCSEETTTEEECGGGTEECC
T ss_pred             EEEEEeCCccccccccCcCCCCHHHHHHHHHHHh---CcccCceeeEEEEEeeeccceehhhcccCCCEEEEECccccCC
Confidence            553332211        12235677777776655   22112232222 356776655555444 589999999999999


Q ss_pred             cCCCCChHHH----HHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhh
Q psy10545        620 ATTGYSLPIA----IQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFL  678 (1428)
Q Consensus       620 P~~G~G~~~a----~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~  678 (1428)
                      |.+|||+|.+    ..|+..|+..+. +.  ....+++.|++ +.....+...+.+.+.++|..
T Consensus       365 P~~GqG~N~gi~DA~nLawkLa~vl~-g~--a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~  425 (665)
T 1pn0_A          365 PKAGQGMNTSMMDTYNLGWKLGLVLT-GR--AKRDILKTYEEERQPFAQALIDFDHQFSRLFSG  425 (665)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHHHT-TC--BCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcccCCcchhHHHHHHHHHHHHHHHc-CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999998754    445555554432 22  23334444433 223333333344455555544

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.70  E-value=2.1e-17  Score=198.24  Aligned_cols=284  Identities=13%  Similarity=0.052  Sum_probs=158.6

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+++|+.|+++|++|+|+|+.+.+           +...+|.++.+....  ....             
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~-----------~~~~~~~~l~~~~~~--~l~~-------------   65 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-----------RAFGAGIYLWHNGLR--VLEG-------------   65 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC-----------CCCSSEEEEEHHHHH--HHHH-------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-----------CCCCceEEeCccHHH--HHHH-------------
Confidence            57899999999999999999999999999998765           222334444443221  1000             


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                            +++|+ .+.. ...++..+...........++..    ..+++.++|..|.+.|.+.+.+.| .++.+++|+++
T Consensus        66 ------~g~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i  133 (379)
T 3alj_A           66 ------LGALD-DVLQ-GSHTPPTYETWMHNKSVSKETFN----GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAA  133 (379)
T ss_dssp             ------TTCHH-HHHT-TCBCCSCEEEEETTEEEEEECGG----GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEE
T ss_pred             ------cCCHH-HHHh-hCCCccceEEEeCCceeeeccCC----CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence                  11111 0000 00111111111111111111110    235789999999999999998877 68889999998


Q ss_pred             eCC-eEEEcCCcEEEeeEEEecCCCCCCC---CC-cceEEEEE---EEEEecC-----CcCCCC-ce-EE-ecccCCCCC
Q psy10545        471 TPT-SIRINNKKIINANCIIDGRGLKNSQ---FD-GIYQIFLG---QQWNLSS-----PHGLDI-PI-IM-DATVNQKND  534 (1428)
Q Consensus       471 ~~~-~v~l~~g~~~~a~lvI~AdG~~S~~---~~-~~~q~~~g---~~~~~~~-----~~~~~~-~~-~~-~~~~~~~~~  534 (1428)
                      +.+ .|++.||.+++||+||+|||.+|..   .. .......+   +...+..     ++.... .. .+ .+.      
T Consensus       134 ~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  207 (379)
T 3alj_A          134 DPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWP------  207 (379)
T ss_dssp             ETTTEEEETTSCEEECSEEEECCCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSS------
T ss_pred             EeCCEEEECCCCEEEcCEEEECCCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEEC------
Confidence            643 5778888899999999999999751   11 11112222   1111222     332111 11 11 111      


Q ss_pred             cceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeee----eeeeeecccCC-chhhhhccCcc
Q psy10545        535 EYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIER----EEIGSIPIALK-NEKIIKFKKTI  609 (1428)
Q Consensus       535 g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~Pl~~~-~~~~~~~~rv~  609 (1428)
                      .-+++|++|++++...+..+......  +.+.+.+.+..+..... .+.+++.    .+...+|+... .......+|++
T Consensus       208 ~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~  284 (379)
T 3alj_A          208 RVQRILYSPCNENELYLGLMAPAADP--RGSSVPIDLEVWVEMFP-FLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVA  284 (379)
T ss_dssp             SCCEEEEEECSSSEEEEEEEECTTCT--TTTCSSCCHHHHHHHCG-GGHHHHHHHHTCTTCCEEEEEEEEESCSEETTEE
T ss_pred             CCCEEEEEECCCCcEEEEEEecCCCC--CHHHHHHHHhcCCchhc-cHHHHHhhCCccceEEecccccCCCCCcccCcEE
Confidence            12467889999887665444322111  01112222222211111 0001100    01112233221 11222458999


Q ss_pred             cccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      +||||||.++|++|||++.++..|..|++.+..
T Consensus       285 lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~  317 (379)
T 3alj_A          285 LVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE  317 (379)
T ss_dssp             ECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             EEEcccCCCCcchhhhHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999988888888764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.70  E-value=6.6e-18  Score=204.00  Aligned_cols=290  Identities=11%  Similarity=0.032  Sum_probs=154.3

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .|++|+|+|++|+++|+.|+++|++|+|+|+.+.+..         ..+.+++++.+.... .+..              
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---------~~~~~~g~l~~~~~~-~l~~--------------   58 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYV---------LGRIRAGVLEQGMVD-LLRE--------------   58 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHH---------HTCCCCCEECHHHHH-HHHH--------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcc---------cCCCceEeECHHHHH-HHHH--------------
Confidence            4688999999999999999999999999998764200         012344455544322 1111              


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                            +++|+ .+. ....++..+..+. ......++.........++++++..+.+.|.+.+.+.| .++.+++|+++
T Consensus        59 ------lg~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i  129 (394)
T 1k0i_A           59 ------AGVDR-RMA-RDGLVHEGVEIAF-AGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRL  129 (394)
T ss_dssp             ------TTCCH-HHH-HHCEEESCEEEEE-TTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEE
T ss_pred             ------cCCcH-HHH-hcCCccceEEEEE-CCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEE
Confidence                  11111 010 0011112111111 11111111100011235678899999999999998777 68889999999


Q ss_pred             eCC--e---EEE-cCCc--EEEeeEEEecCCCCCCC---CCcc----eEEE--EEEE-EEecCCcCCCCceEEecccCCC
Q psy10545        471 TPT--S---IRI-NNKK--IINANCIIDGRGLKNSQ---FDGI----YQIF--LGQQ-WNLSSPHGLDIPIIMDATVNQK  532 (1428)
Q Consensus       471 ~~~--~---v~l-~~g~--~~~a~lvI~AdG~~S~~---~~~~----~q~~--~g~~-~~~~~~~~~~~~~~~~~~~~~~  532 (1428)
                      +.+  +   |++ .+|.  +++||+||+|||.+|..   ....    ....  ..+. +....+..... .++..    .
T Consensus       130 ~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~  204 (394)
T 1k0i_A          130 HDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHE-LIYAN----H  204 (394)
T ss_dssp             ECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCCSCSS-CEEEC----C
T ss_pred             EEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcCccccccccccccceeEEEecCCCCCccc-eEEEE----c
Confidence            742  2   666 6787  79999999999999872   1110    1111  1111 11122221111 11111    1


Q ss_pred             CCcceEEEEeeCCCCceEEEeEEeccC--CCCCHHHHHHHHHHHHHH-cCCccceeeeeeeeeecccCCchhhhhccCcc
Q psy10545        533 NDEYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIK-NRWKLKNIEREEIGSIPIALKNEKIIKFKKTI  609 (1428)
Q Consensus       533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~  609 (1428)
                      +.+  |+|+.|..++...+........  ...+.+.+.+.+.+.+.. .++.+..........+|+..........+|++
T Consensus       205 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~  282 (394)
T 1k0i_A          205 PRG--FALCSQRSATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLF  282 (394)
T ss_dssp             TTC--CEEEEEEETTEEEEEEEECTTCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEEEEEEEEEEEEEECSEETTEE
T ss_pred             CCc--eEEEEecCCCcEEEEEEeCCCCCccccCHHHHHHHHHHhhCcccccccccCcceeeEEEEhhhhhccccccCCEE
Confidence            123  3444555555544433322211  112344444444443211 01011000111235667765544434568999


Q ss_pred             cccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      |||||||.+||++|||++.++..|..|++++.
T Consensus       283 LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~  314 (394)
T 1k0i_A          283 LAGDAAHIVPPTGAKGLNLAASDVSTLYRLLL  314 (394)
T ss_dssp             ECGGGTEECCGGGTCHHHHHHHHHHHHHHHHH
T ss_pred             EEechhhcCCCcccchHHHHHHHHHHHHHHHH
Confidence            99999999999999998765555555555443

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.69  E-value=7.6e-17  Score=190.97  Aligned_cols=289  Identities=14%  Similarity=0.156  Sum_probs=188.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEE-cccccccCC-chHHHHHHHHhcccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIF-DAGPTVITD-PNSIKLLFDLSKNRMEN  786 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~-d~G~~~i~~-~~~~~~l~~~lG~~l~~  786 (1428)
                      .++||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+ |.|+|++.. ...+.++++++|.    
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~----  103 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTE----  103 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCC----
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhh----
Confidence            468999999999999999999999999999999999999999987 678875 999999874 4566778888773    


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                         +.+... ....+.+|+.+++|.+...+.. +... +........++.      ..      ..              
T Consensus       104 ---~~~~~~-~~~~~~~g~l~~lP~~~~~~~~-l~~~-~~~~~~~~~~l~------~~------~~--------------  151 (397)
T 3hdq_A          104 ---WRPYQH-RVLASVDGQLLPIPINLDTVNR-LYGL-NLTSFQVEEFFA------SV------AE--------------  151 (397)
T ss_dssp             ---EEECCC-BEEEEETTEEEEESCCHHHHHH-HHTC-CCCHHHHHHHHH------HH------CC--------------
T ss_pred             ---cccccc-cceEEECCEEEEcCCChHHHHH-hhcc-CCCHHHHHHHHh------hc------cc--------------
Confidence               222222 2234557888898877543322 1111 011111111111      00      00              


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHH-HHHHHHh---ccc--cce--eeecCchHHHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSI-YTLIHAL---EYE--WGI--WFPKGGVGALIKAL  937 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~-~~~~~~~---~~~--~g~--~~~~gG~~~l~~~L  937 (1428)
                        ......++.+|+.+.++.+..+.++. +....++.+|.++++. ...+...   +..  .+.  .+|+||+.++++.|
T Consensus       152 --~~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l  229 (397)
T 3hdq_A          152 --KVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNM  229 (397)
T ss_dssp             --CCSSCCBHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHH
T ss_pred             --CCCCCcCHHHHHHHhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHH
Confidence              01236899999999988888888877 4556778888888752 1111000   000  122  36999999999998


Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceE
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLF 1017 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~ 1017 (1428)
                      ++   ..|++|++|++|+++              +.++.+|+||+|+|+..+..             ....++.|. |+.
T Consensus       230 ~~---~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P~d~~~~-------------~~~g~L~yr-sl~  278 (397)
T 3hdq_A          230 LS---SPNIKVMLNTDYREI--------------ADFIPFQHMIYTGPVDAFFD-------------FCYGKLPYR-SLE  278 (397)
T ss_dssp             TC---STTEEEEESCCGGGT--------------TTTSCEEEEEECSCHHHHTT-------------TTTCCCCEE-EEE
T ss_pred             Hh---ccCCEEEECCeEEec--------------cccccCCEEEEcCCHHHHHH-------------HhcCCCCCc-eEE
Confidence            54   458999999999833              34567999999998776532             124456676 677


Q ss_pred             EEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecC
Q psy10545       1018 VIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVP 1087 (1428)
Q Consensus      1018 ~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p 1087 (1428)
                      .++++++.+ +.  +.+++.++++               + |...++.+++. +.. +.++++++...+++
T Consensus       279 ~~~~~~~~~~~~--~~~~vn~~d~---------------~-p~tRi~e~k~~-~~~-~~~~t~i~~Ey~~~  329 (397)
T 3hdq_A          279 FRHETHDTEQLL--PTGTVNYPND---------------Y-AYTRVSEFKHI-TGQ-RHHQTSVVYEYPRA  329 (397)
T ss_dssp             EEEEEESSSCSC--SSSEEECSSS---------------S-SCSEEEEHHHH-HCC-CCSSEEEEEEEEES
T ss_pred             EEEEEeccccCC--CCeEEEeCCC---------------C-cceEEEeeccc-CCC-CCCCEEEEEEECCC
Confidence            888899866 32  3445665421               2 34445544443 222 44677777776663

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.69  E-value=2.1e-17  Score=200.76  Aligned_cols=153  Identities=21%  Similarity=0.158  Sum_probs=90.3

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHH-HhcCCCceEEEeecCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYL-KQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~-~~~~~~~rv~~l~~~s~  392 (1428)
                      ++|+|+||+|+++|+.|+++|++|+|+|+.+.+           ....+|+|+...+...+. ....+.-....+.....
T Consensus         4 V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~-----------~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~   72 (412)
T 4hb9_A            4 VGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA-----------SSILPGYGIHINSFGKQALQECLPAENWLAFEEASR   72 (412)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS-----------CSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCE
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC-----------CcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhc
Confidence            579999999999999999999999999998766           445567777543333222 11111000000000000


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcC-----CCcccccccceeeechHHHHHHHHHhccCCeEEecceE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFP-----KFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTV  467 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v  467 (1428)
                      .......++.                  .....+...     ..........+.|+|..|.+.|.+.+..  .+.++++|
T Consensus        73 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~--~v~~~~~v  132 (412)
T 4hb9_A           73 YIGGQSRFYN------------------ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLAN--TIQWNKTF  132 (412)
T ss_dssp             EECCCCEEEC------------------TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTT--TEECSCCE
T ss_pred             ccCcceeEec------------------CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccc--eEEEEEEE
Confidence            0000000000                  000001000     0011122356789999999999887643  47788999


Q ss_pred             EEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        468 EIITP--TS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       468 ~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++++.  ++   |++.||.+++||+||||||.+|.
T Consensus       133 ~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          133 VRYEHIENGGIKIFFADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             EeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcc
Confidence            98863  22   67889999999999999999986

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.68  E-value=4.8e-17  Score=204.06  Aligned_cols=290  Identities=14%  Similarity=0.175  Sum_probs=157.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|+||+|+|++|+++|+.|+++|++|+|||+.+.+           +. .+|.++.+..... +...            
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~-----------~~-~~G~~l~p~~~~~-l~~l------------   77 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP-----------RY-RVGESLLPGTMSI-LNRL------------   77 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS-----------CC-CCCCBCCHHHHHH-HHHT------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCC-----------CC-ceeeeECHHHHHH-HHHc------------
Confidence            368999999999999999999999999999998654           11 2345555543321 1110            


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccC----ccEEEcCCCccc--ccccceeeechHHHHHHHHHhccCC-eEEe
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWP----SYQVKFPKFNRK--IFSGYYSICSKHLNSYLIRALGINN-FLFN  463 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~  463 (1428)
                              ++|+ .+..... .........|.    .....+......  ....++.++|..|.+.|.+.+.+.| .++.
T Consensus        78 --------Gl~~-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~  147 (591)
T 3i3l_A           78 --------GLQE-KIDAQNY-VKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHE  147 (591)
T ss_dssp             --------TCHH-HHHHHCC-EEECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred             --------CCcH-HHHhcCC-cccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEe
Confidence                    1110 0000000 00000000011    112222221110  1234688999999999999998888 6888


Q ss_pred             cceEEEEeCC-e----EEEc-CC--cEEEeeEEEecCCCCCCC---C--Cc----ceEEEEEEEEEecCC--cCCCCceE
Q psy10545        464 NKTVEIITPT-S----IRIN-NK--KIINANCIIDGRGLKNSQ---F--DG----IYQIFLGQQWNLSSP--HGLDIPII  524 (1428)
Q Consensus       464 ~~~v~~i~~~-~----v~l~-~g--~~~~a~lvI~AdG~~S~~---~--~~----~~q~~~g~~~~~~~~--~~~~~~~~  524 (1428)
                      +++|+++..+ +    |++. +|  .+++|++||+|||.+|..   .  ..    +.+.++...+....+  .......+
T Consensus       148 g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~  227 (591)
T 3i3l_A          148 ETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTY  227 (591)
T ss_dssp             TCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEE
T ss_pred             CCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceE
Confidence            9999998743 1    6665 66  579999999999999751   1  11    112222222222211  11112222


Q ss_pred             EecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCC----CCHHHHHHHHHHHHHHcCCcccee-eeeeeeeecccCCc
Q psy10545        525 MDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPF----LKIDMLKKSIKDYAIKNRWKLKNI-EREEIGSIPIALKN  599 (1428)
Q Consensus       525 ~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Pl~~~~  599 (1428)
                      ..+.      ..+++|++|++++..+++.+.......    .+.+.+.+.+.+........+... .......+|.....
T Consensus       228 ~~~~------~~G~~w~iPl~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~~  301 (591)
T 3i3l_A          228 SITF------EDGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWSYD  301 (591)
T ss_dssp             EEEE------TTEEEEEEECSSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEEEE
T ss_pred             EEEc------CCcEEEEEECCCCeEEEEEEcCHHHHhhhccCCHHHHHHHHHHhCHHHHHHHhcCccccCceEecccccc
Confidence            2221      124689999998887776654433210    111222222221111000000000 11112233332222


Q ss_pred             hhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        600 EKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       600 ~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ......+|+++||||||.++|++|||++.|+..|..+++++.
T Consensus       302 ~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~  343 (591)
T 3i3l_A          302 TEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAID  343 (591)
T ss_dssp             ESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHH
Confidence            333356899999999999999999998876666666665554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.68  E-value=2.1e-15  Score=182.09  Aligned_cols=288  Identities=14%  Similarity=0.048  Sum_probs=149.1

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHH-HHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSI-IAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~-~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +.+++|+|+|++|+++|+.|+++|++|+|+|+.+.+           +.+.+|+++.... ...+.              
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-----------~~~~~g~~~~~~~~~~~~~--------------   80 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR-----------EARIFGGTLDLHKGSGQEA--------------   80 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST-----------TCCCCSCCEECCTTTHHHH--------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc-----------cccccCCeeeeCCccHHHH--------------
Confidence            357899999999999999999999999999998765           2334555553110 00000              


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccceeeechHHHHHHHHHhccCCeEEecceEE
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVE  468 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~  468 (1428)
                           +..+++|+ .+.. ...+... ..++. .....+... ..........++|..|.+.|.+++.+ ..++.+++|+
T Consensus        81 -----l~~~gl~~-~~~~-~~~~~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~  150 (398)
T 2xdo_A           81 -----MKKAGLLQ-TYYD-LALPMGV-NIADE-KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN-DTVIWDRKLV  150 (398)
T ss_dssp             -----HHHTTCHH-HHHH-HCBCCCE-EEECS-SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT-TSEEESCCEE
T ss_pred             -----HHhcChHH-HHHH-hhcccce-EEECC-CCCchhhccccccCCCCCceECHHHHHHHHHhhcCC-CEEEECCEEE
Confidence                 00011111 0000 0001111 11110 111111100 00011234579999999999998865 4577899999


Q ss_pred             EEeCCe----EEEcCCcEEEeeEEEecCCCCCCCC---CcceEEEEE---EEEEecCC---cCC-----CCceEEecccC
Q psy10545        469 IITPTS----IRINNKKIINANCIIDGRGLKNSQF---DGIYQIFLG---QQWNLSSP---HGL-----DIPIIMDATVN  530 (1428)
Q Consensus       469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~~---~~~~q~~~g---~~~~~~~~---~~~-----~~~~~~~~~~~  530 (1428)
                      +++.++    |++.+|.+++||+||+|||.+|...   ........+   +...+...   +..     ....++.++  
T Consensus       151 ~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--  228 (398)
T 2xdo_A          151 MLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASH--  228 (398)
T ss_dssp             EEEECSSSEEEEETTSCCEEESEEEECSCTTCSCCTTTCCCCCEEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEE--
T ss_pred             EEEECCCEEEEEECCCcEEecCEEEECCCcchhHHhhccCCCceEcceEEEEEEeCchhccCchhHhhcCCceEEEec--
Confidence            987432    6777888999999999999998621   111111111   11112211   000     000111111  


Q ss_pred             CCCCcceEEEEeeCCCCceEEEeEEeccC--------CCCCHHHHHHHHHHHHHHcCCccc-------eeeeeeeeeecc
Q psy10545        531 QKNDEYHFIYTLPLTPNSLMIEDTRYTKK--------PFLKIDMLKKSIKDYAIKNRWKLK-------NIEREEIGSIPI  595 (1428)
Q Consensus       531 ~~~~g~~f~~~lPl~~~~~~v~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~Pl  595 (1428)
                         .+ .++...|.+++...+........        ...+.+.+.+.+.+.+......+.       .+.......+|+
T Consensus       229 ---~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (398)
T 2xdo_A          229 ---QG-NLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPL  304 (398)
T ss_dssp             ---TT-EEEEEEEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHCSCCEEEEEEECCC
T ss_pred             ---CC-CeEEEEeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHHHHHhCcccceeeeeEeccC
Confidence               01 12334566666555433322111        112344555555443211110111       111122223443


Q ss_pred             cCCchhhhhcc--CcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        596 ALKNEKIIKFK--KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       596 ~~~~~~~~~~~--rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      .....   ..+  |++|||||||.++|++|||++.++..|..|++++..
T Consensus       305 ~~~~~---~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~  350 (398)
T 2xdo_A          305 EKPWK---SKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD  350 (398)
T ss_dssp             CSCCC---SCCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHS
T ss_pred             CCCcc---cCCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHh
Confidence            22111   124  899999999999999999988777777777776654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.66  E-value=3.3e-16  Score=196.50  Aligned_cols=296  Identities=11%  Similarity=0.076  Sum_probs=160.2

Q ss_pred             hHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHh
Q psy10545        298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ  377 (1428)
Q Consensus       298 ~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~  377 (1428)
                      ++.+|-.|... .+.|++|+|+||+|+++|+.|+++|++|+|||+.+.+           +...+|.++.+..+... .+
T Consensus        14 ~~~~~~~M~~~-~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~-----------~~~~~~~~l~~~~~~~l-~~   80 (549)
T 2r0c_A           14 LVPRGSHMNAP-IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT-----------ITHPRVGTIGPRSMELF-RR   80 (549)
T ss_dssp             --------CCC-EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC-----------CSSCCCCEECHHHHHHH-HH
T ss_pred             ccchhhhcCCC-CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC-----------CCCCceeeeCHHHHHHH-HH
Confidence            33444444322 3468999999999999999999999999999998765           34456777776543211 00


Q ss_pred             cCCCceEEEeecCCCCC---CceeeeccCCcCcccccccccccccccCc-c--EEEcCCCc-----ccccccceeeechH
Q psy10545        378 YNPKLNVLLLELSSSVK---NHIWSFHQNDISSSQYMLIKPLITYSWPS-Y--QVKFPKFN-----RKIFSGYYSICSKH  446 (1428)
Q Consensus       378 ~~~~~rv~~l~~~s~~~---~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~-----~~~~~~~~~i~r~~  446 (1428)
                      ..-.-++  ...+....   ...|.                   ....+ .  .+.++...     ...+..++.+++..
T Consensus        81 lGl~~~~--~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  139 (549)
T 2r0c_A           81 WGVAKQI--RTAGWPGDHPLDAAWV-------------------TRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHW  139 (549)
T ss_dssp             TTCHHHH--HTSSCCTTSBCCEEEE-------------------SSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHH
T ss_pred             cCChHHH--HhhcCCcccccceEEe-------------------ccCCCceeEeecccccccccccCCCCCcccccCHHH
Confidence            0000000  00000000   00000                   00001 0  11111100     01223568899999


Q ss_pred             HHHHHHHHhccCCeEEecceEEEEeCCe----EEEcC---C--cEEEeeEEEecCCCCCCC-------C--CcceEEEEE
Q psy10545        447 LNSYLIRALGINNFLFNNKTVEIITPTS----IRINN---K--KIINANCIIDGRGLKNSQ-------F--DGIYQIFLG  508 (1428)
Q Consensus       447 l~~~L~~~~~~~~~~~~~~~v~~i~~~~----v~l~~---g--~~~~a~lvI~AdG~~S~~-------~--~~~~q~~~g  508 (1428)
                      +++.|.+.+.+.  ++.+++|++++.++    +++.+   |  .+++|++||+|||.+|..       .  ..+.+.++.
T Consensus       140 l~~~L~~~a~~~--v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~  217 (549)
T 2r0c_A          140 LAPLLAEAVGER--LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRN  217 (549)
T ss_dssp             HHHHHHHHHGGG--EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEE
T ss_pred             HHHHHHHHHHHh--cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEE
Confidence            999999999876  88899999987432    45544   6  479999999999999751       1  124455665


Q ss_pred             EEEEecCC----cCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccce
Q psy10545        509 QQWNLSSP----HGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKN  584 (1428)
Q Consensus       509 ~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  584 (1428)
                      ..++....    +.......+.+..    ++ .+++++|++++..+.. .........+.+.+.+.+.+++   +..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p----~~-~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~---~~~~~-  287 (549)
T 2r0c_A          218 ILFRAPELRSLLGERAALFFFLMLS----SS-LRFPLRALDGRGLYRL-TVGVDDASKSTMDSFELVRRAV---AFDTE-  287 (549)
T ss_dssp             EEEECTTHHHHHGGGCCSEEEEEEE----TT-EEEEEEESSSSSEEEE-EEECSTTCCSCCCHHHHHHHHB---CSCCC-
T ss_pred             EEEECCchHHhcCCCCceEEEEECC----CC-cEEEEEEECCCcEEEE-EecCCCCCCCHHHHHHHHHHHh---CCCCc-
Confidence            55554310    0111111111111    11 2456788865433321 1111111123345555565554   32211 


Q ss_pred             eeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHH----HHHHHHHHHhh
Q psy10545        585 IEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPI----AIQLAENIAKY  639 (1428)
Q Consensus       585 ~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~----a~~la~~l~~~  639 (1428)
                      +.......+++....+.....+||+|+|||||.++|++|||+|.    |..|+..|+..
T Consensus       288 ~~~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~  346 (549)
T 2r0c_A          288 IEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAAT  346 (549)
T ss_dssp             CEEEEEEEEEECCEECSCSEETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEecchhHhhhHHhhcCCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHH
Confidence            11122345666555555445689999999999999999999875    44555555443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.66  E-value=1e-15  Score=183.66  Aligned_cols=277  Identities=9%  Similarity=-0.041  Sum_probs=149.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +++|+|+|++|+++|+.|+++  |++|+|+|+.+.+             ...|.|+...                   ..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~-------------~~~g~~~~~~-------------------~~   49 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ-------------EVLGWGVVLP-------------------GR   49 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT-------------CCCCSEEEEE-------------------SC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC-------------CcceeEEEeC-------------------cH
Confidence            467999999999999999999  9999999998654             1123333211                   11


Q ss_pred             CCCCCceeeec-cCC-cCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545        391 SSVKNHIWSFH-QND-ISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v  467 (1428)
                      .........+| + . +. ....+...+.... .+..+..     ....+++.++|..|.+.|.+++.+.| .++.+++|
T Consensus        50 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~g~~~~~-----~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v  121 (381)
T 3c4a_A           50 PGQHPANPLSYLD-APER-LNPQFLEDFKLVH-HNEPSLM-----STGVLLCGVERRGLVHALRDKCRSQGIAIRFESPL  121 (381)
T ss_dssp             TTTCTTCGGGGSS-CGGG-GCCEEECCEEEEE-SSSEEEC-----CCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCC
T ss_pred             HHHhhcCcchhhh-hhHH-HhhccccceEEEe-CCeeEEe-----cCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEe
Confidence            11100000111 1 0 00 0011111111111 1111110     11235678999999999999998877 68888888


Q ss_pred             EEEeCCeEEEcCCcEEEeeEEEecCCCCCCCCCc-------ceEEEEEE-EEEecCCcCCCCceEEecccCCCCCcceEE
Q psy10545        468 EIITPTSIRINNKKIINANCIIDGRGLKNSQFDG-------IYQIFLGQ-QWNLSSPHGLDIPIIMDATVNQKNDEYHFI  539 (1428)
Q Consensus       468 ~~i~~~~v~l~~g~~~~a~lvI~AdG~~S~~~~~-------~~q~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~  539 (1428)
                      ++++..       .+++|++||+|||.+|. ...       ......+. .+....+........+.+    ...|+.++
T Consensus       122 ~~i~~~-------~~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~  189 (381)
T 3c4a_A          122 LEHGEL-------PLADYDLVVLANGVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQLFDQMNLVFRT----HGKDIFIA  189 (381)
T ss_dssp             CSGGGC-------CGGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSCCSSEEEEEEE----ETTEEEEE
T ss_pred             ccchhc-------ccccCCEEEECCCCCch-HHhhhhhcCCCcccCCccEEEEecCCCCCcceeeEee----CCCcEEEE
Confidence            877542       13579999999999985 211       00110111 111111111111222221    12344344


Q ss_pred             EEeeCCCCceEEEeEEec------cCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccC-CchhhhhccCccccc
Q psy10545        540 YTLPLTPNSLMIEDTRYT------KKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIAL-KNEKIIKFKKTICVG  612 (1428)
Q Consensus       540 ~~lPl~~~~~~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~-~~~~~~~~~rv~lvG  612 (1428)
                      +++|++++..++......      .....+.+.+.+.+.+++....... +++......+|+.. ........+|++|||
T Consensus       190 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~grv~LvG  268 (381)
T 3c4a_A          190 HAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGH-GLVSQPGLGWRNFMTLSHDRCHDGKLVLLG  268 (381)
T ss_dssp             EEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTTC-CCBCCTTTCSEEEEECCCSCSEETTEEECG
T ss_pred             EEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCCc-hhhcCCCcceeeeccccCCCcccCCEEEEE
Confidence            578998776544333211      1122345566666666655422111 22221111233321 112223458999999


Q ss_pred             ccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        613 LRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       613 dAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      ||||.+||++|||++.|+..|..|++++..
T Consensus       269 DAAh~~~P~~GqG~~~al~Da~~La~~L~~  298 (381)
T 3c4a_A          269 DALQSGHFSIGHGTTMAVVVAQLLVKALCT  298 (381)
T ss_dssp             GGTCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCccccHHHHHHHHHHHHHHHhc
Confidence            999999999999998877777777777654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.65  E-value=6.2e-16  Score=186.69  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=89.0

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+++|+.|+++|++|+|+|+.+.+            ...+|+|+............             
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~------------~~~~~~g~~l~~~~~~~l~~-------------   60 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP------------LSGFGTGIVVQPELVHYLLE-------------   60 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------------CCCCSCEEECCHHHHHHHHH-------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC------------CCccccccccChhHHHHHHH-------------
Confidence            47889999999999999999999999999988643            12245555332222222111             


Q ss_pred             CCCCceeeeccCCcCccccccccccccccc-CccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSW-PSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                            +++|..    ....+...+..... .+..+.      ....+...+.+..+.+.|.+.+.  + .++.+++|++
T Consensus        61 ------~g~~~~----~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~l~~~L~~~~~--~~~i~~~~~v~~  122 (397)
T 2vou_A           61 ------QGVELD----SISVPSSSMEYVDALTGERVG------SVPADWRFTSYDSIYGGLYELFG--PERYHTSKCLVG  122 (397)
T ss_dssp             ------TTCCGG----GTCBCCCEEEEEETTTCCEEE------EEECCCCEEEHHHHHHHHHHHHC--STTEETTCCEEE
T ss_pred             ------cCCccc----cccccccceEEEecCCCCccc------cccCcccccCHHHHHHHHHHhCC--CcEEEcCCEEEE
Confidence                  111110    00111111111111 111110      01113345788899999998873  4 6888999999


Q ss_pred             EeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        470 ITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++.+  .  |++.+|.+++|++||+|||.+|.
T Consensus       123 i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          123 LSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             EEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            9643  2  67788889999999999999976

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.64  E-value=6.9e-16  Score=187.13  Aligned_cols=290  Identities=14%  Similarity=0.116  Sum_probs=148.3

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCe-EEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGIS-TIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~-V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .+++|+|+|++|+++|+.|+++|++ |+|+|+.+.+           +  .+|.|+.......+....            
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~-----------~--~~g~g~~l~~~~~~~l~~------------   59 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI-----------R--PLGVGINIQPAAVEALAE------------   59 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC-----------C--CCSCEEEECHHHHHHHHH------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc-----------c--cceeEEEEChHHHHHHHH------------
Confidence            4789999999999999999999999 9999998754           1  123333221111111110            


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCcc-EEEcCCC-cccccccceeeechHHHHHHHHHhccC-C--eEEecc
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-QVKFPKF-NRKIFSGYYSICSKHLNSYLIRALGIN-N--FLFNNK  465 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~-~--~~~~~~  465 (1428)
                             +++|+ .+.. ...++..+......+. ....+.. ......+++.++|..|.+.|.+++.+. |  .++.++
T Consensus        60 -------lg~~~-~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~  130 (410)
T 3c96_A           60 -------LGLGP-ALAA-TAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGL  130 (410)
T ss_dssp             -------TTCHH-HHHH-HSEEECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESE
T ss_pred             -------CCChH-HHHh-hCCCcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECC
Confidence                   11111 0000 0011111111111111 1111110 011223568899999999999999762 4  588899


Q ss_pred             eEEEEeC-Ce--EEEcC---C--cEEEeeEEEecCCCCCCC---CC--cceEEEEEEE---EEec-CCcCCCCceEEecc
Q psy10545        466 TVEIITP-TS--IRINN---K--KIINANCIIDGRGLKNSQ---FD--GIYQIFLGQQ---WNLS-SPHGLDIPIIMDAT  528 (1428)
Q Consensus       466 ~v~~i~~-~~--v~l~~---g--~~~~a~lvI~AdG~~S~~---~~--~~~q~~~g~~---~~~~-~~~~~~~~~~~~~~  528 (1428)
                      +|++++. +.  |++.+   |  .+++|++||+|||.+|..   +.  .....+.+..   .... .+...... .+.++
T Consensus       131 ~v~~i~~~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~  209 (410)
T 3c96_A          131 GVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKT-MIVAN  209 (410)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCTTSSE-EEEEE
T ss_pred             EEEEEecCCccEEEEecCCCCCceEEecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccccCCCe-EEEec
Confidence            9998875 22  55554   6  579999999999999761   11  1111121211   1111 22211111 22222


Q ss_pred             cCCCCCcceEEEEeeCCC-----CceEEEeEEe-cc--------CC----CCCHHHHHHHHHHHHHHcCC-ccceeee--
Q psy10545        529 VNQKNDEYHFIYTLPLTP-----NSLMIEDTRY-TK--------KP----FLKIDMLKKSIKDYAIKNRW-KLKNIER--  587 (1428)
Q Consensus       529 ~~~~~~g~~f~~~lPl~~-----~~~~v~~~~~-~~--------~~----~~~~~~~~~~l~~~~~~~~~-~~~~~~~--  587 (1428)
                      .  .  ...+++++|+++     +...+.+... ..        ..    ....+++.+.+..+.  .++ ...+++.  
T Consensus       210 ~--~--~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~  283 (410)
T 3c96_A          210 D--E--HWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWD--LGWFDIRDLLTRN  283 (410)
T ss_dssp             C--T--TCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCC--BTTBCHHHHHHTC
T ss_pred             C--C--CCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCC--CchhHHHHHHhcC
Confidence            1  0  112466788753     3222221111 10        01    112233333221110  011 0111111  


Q ss_pred             eeeeeecccCCc-hhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        588 EEIGSIPIALKN-EKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       588 ~~~~~~Pl~~~~-~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      .....+|+.... ......+|++|||||||.++|++|||++.++..|..|++.+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~  339 (410)
T 3c96_A          284 QLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR  339 (410)
T ss_dssp             SEEEEEEEEECCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             cccceeecccCCCccccccCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhc
Confidence            112345554322 2223458999999999999999999998777777777777654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.63  E-value=2e-15  Score=188.77  Aligned_cols=191  Identities=14%  Similarity=0.083  Sum_probs=118.4

Q ss_pred             cceeeechHHHHHHHHHhcc-CC-eEEecceEEEEeCC------eEEEcCCcEEEeeEEEecCCCCCCCCC----c-c--
Q psy10545        438 GYYSICSKHLNSYLIRALGI-NN-FLFNNKTVEIITPT------SIRINNKKIINANCIIDGRGLKNSQFD----G-I--  502 (1428)
Q Consensus       438 ~~~~i~r~~l~~~L~~~~~~-~~-~~~~~~~v~~i~~~------~v~l~~g~~~~a~lvI~AdG~~S~~~~----~-~--  502 (1428)
                      ..+.++|..|.+.|.+.+.+ .| .++.+ +|+++..+      .|++.+|.+++|++||+|||.+|...+    . .  
T Consensus       168 ~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~~  246 (526)
T 2pyx_A          168 YGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFLS  246 (526)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEEE
T ss_pred             eeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCccc
Confidence            45789999999999999988 78 56667 69888632      256677778999999999999976311    1 0  


Q ss_pred             ------eEEEEEEEEEecCCcCC-CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHH
Q psy10545        503 ------YQIFLGQQWNLSSPHGL-DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYA  575 (1428)
Q Consensus       503 ------~q~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~  575 (1428)
                            ...++...+....+... .......+      ...+++|++|++++ ..++.. ++.. ..+.+...+.+.+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~pl~~~-~~~~~v-~~~~-~~~~~~~~~~l~~~l  317 (526)
T 2pyx_A          247 QKSVLFNDRALAIQVPYSDANSPIASCTHSTA------QPNGWIWDIGLPTR-KGVGYV-YSSS-HTNDIDAQKTLFNYL  317 (526)
T ss_dssp             CHHHHCCCEEEEEEEECSSTTCCCCSSEEEEE------ETTEEEEEEECSSE-EEEEEE-ECTT-TCCHHHHHHHHHHHH
T ss_pred             ccccccCccEEEEEeeccCCCCCCCCceeEEe------cCCCeEEEeeCCCc-eEEEEE-ecCC-CCChHHHHHHHHHHH
Confidence                  11334434333221111 11111111      11247889999764 333222 2222 224455556666655


Q ss_pred             HHcCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        576 IKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      ...+..   +...+...+|+..........+|+++||||||.++|++|||++.++..|..|++++.
T Consensus       318 ~~~~~~---l~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~  380 (526)
T 2pyx_A          318 GVDGAA---ADKLEPRQLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLP  380 (526)
T ss_dssp             TCCHHH---HHHCCCEEEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             HhcCcc---cccCCceEEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhh
Confidence            221111   111222355665544444456999999999999999999999999999999998876

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.62  E-value=3.4e-15  Score=190.44  Aligned_cols=292  Identities=10%  Similarity=0.067  Sum_probs=157.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHhh-cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQT-AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~-~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +.|++|+|+||+|+++|+.|++ .|++|+|||+++.+           ....++.|+.+..+...- ...-.-++  ...
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~-----------~~~g~a~~l~~~t~e~l~-~lGl~~~~--~~~   97 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP-----------MELGQADGIACRTMEMFE-AFEFADSI--LKE   97 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC-----------CSSCSCCEECHHHHHHHH-HTTCHHHH--HHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC-----------CCCCceeeeCHHHHHHHH-HcCcHHHH--HHh
Confidence            4689999999999999999999 99999999998765           334466677665432110 00000000  000


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccc-ccccceeeechHHHHHHHHHhccCC---eEEecc
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRK-IFSGYYSICSKHLNSYLIRALGINN---FLFNNK  465 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~  465 (1428)
                      +.  ......+|..+..  ....+         .....++..... .....+.+++..+.+.|.+.+.+.|   .++.++
T Consensus        98 ~~--~~~~~~~~~~~~~--~~g~~---------~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~  164 (639)
T 2dkh_A           98 AC--WINDVTFWKPDPG--QPGRI---------ARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYAR  164 (639)
T ss_dssp             SE--EECEEEEEEECTT--STTCE---------EEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSE
T ss_pred             cc--cccceEEECCCCC--CCcce---------EeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCC
Confidence            00  0001112210000  00000         000011111111 1234578999999999999998875   578899


Q ss_pred             eEEEEeCC------e--EEEc------CC--cEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEe--cCCcC
Q psy10545        466 TVEIITPT------S--IRIN------NK--KIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNL--SSPHG  518 (1428)
Q Consensus       466 ~v~~i~~~------~--v~l~------~g--~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~--~~~~~  518 (1428)
                      +|++++.+      .  |++.      +|  .+++|++||+|||.+|..   +.      .+.+......+..  ..|+.
T Consensus       165 ~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~~  244 (639)
T 2dkh_A          165 RVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDV  244 (639)
T ss_dssp             EEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTTT
T ss_pred             EEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCcc
Confidence            99998632      2  4443      45  479999999999999761   11      1112222222221  22221


Q ss_pred             CCCceEEecccCCCCCcceEEEEeeCCCC-ceEEEeEEec--c-----CCCCCHHHHHHHHHHHHHHcCCccceeeeee-
Q psy10545        519 LDIPIIMDATVNQKNDEYHFIYTLPLTPN-SLMIEDTRYT--K-----KPFLKIDMLKKSIKDYAIKNRWKLKNIEREE-  589 (1428)
Q Consensus       519 ~~~~~~~~~~~~~~~~g~~f~~~lPl~~~-~~~v~~~~~~--~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  589 (1428)
                      . ....+..    .   .++++++|++++ ...+......  .     ....+.+++.+.+.+.+   +....++.... 
T Consensus       245 ~-~~~~~~~----~---~g~~~~~P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~  313 (639)
T 2dkh_A          245 R-YKVAIQS----E---QGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVL---HPYKLEVKNVPW  313 (639)
T ss_dssp             T-SEEEEEE----T---TEEEEEEECTTSSCEEEEEECC-----------CCCHHHHHHHHHHHH---TTSCEEEEEEEE
T ss_pred             c-eeEEEEc----C---CceEEEEEcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHh---CcccCcceeeeE
Confidence            1 1111111    1   245778899877 4444332211  0     12235566766666555   21111222111 


Q ss_pred             eeeecccCCchhhhh------------ccCcccccccccccccCCCCChHHHHH----HHHHHHhhc
Q psy10545        590 IGSIPIALKNEKIIK------------FKKTICVGLRANLLHATTGYSLPIAIQ----LAENIAKYS  640 (1428)
Q Consensus       590 ~~~~Pl~~~~~~~~~------------~~rv~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~  640 (1428)
                      ...+++....+..+.            .+||+|+|||||.++|++|||++.++.    |+..|+..+
T Consensus       314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl  380 (639)
T 2dkh_A          314 WSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVL  380 (639)
T ss_dssp             EEEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHH
Confidence            245665544333333            689999999999999999999875444    555555443

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.59  E-value=4.4e-14  Score=177.25  Aligned_cols=188  Identities=9%  Similarity=0.056  Sum_probs=119.0

Q ss_pred             cceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--C----eEEEcCCcEEEeeEEEecCCCCCCCCC----cc----
Q psy10545        438 GYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--T----SIRINNKKIINANCIIDGRGLKNSQFD----GI----  502 (1428)
Q Consensus       438 ~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~S~~~~----~~----  502 (1428)
                      ..+.++|..|.+.|.+.+.+.| .++.+ +|+++..  +    .|++.+|.+++|++||+|||.+|....    ..    
T Consensus       158 ~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~  236 (538)
T 2aqj_A          158 HAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDM  236 (538)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEEC
T ss_pred             ccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCcccc
Confidence            3578999999999999998888 56667 8988863  2    266778878999999999999876311    00    


Q ss_pred             -----eEEEEEEEEEecCCcC-CCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHH
Q psy10545        503 -----YQIFLGQQWNLSSPHG-LDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAI  576 (1428)
Q Consensus       503 -----~q~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~  576 (1428)
                           .+.++...+....+.. .........      ...+++|++|+++. ..++.. ++. ...+.+...+.+.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~p~~~~-~~~g~v-~~~-~~~~~~~~~~~l~~~~~  307 (538)
T 2aqj_A          237 SDYLLCDSAVASAVPNDDARDGVEPYTSSIA------MNSGWTWKIPMLGR-FGSGYV-FSS-HFTSRDQATADFLKLWG  307 (538)
T ss_dssp             TTTCCCCEEEEEEEECCHHHHCCCSSEEEEE------CSSEEEEEEEETTE-EEEEEE-ECT-TTSCHHHHHHHHHHHHT
T ss_pred             ccccccceEEEEecccCCcccCCCCceeeee------cCCceEEEecCCCc-eEEEEE-EcC-CCCChHHHHHHHHHHhc
Confidence                 1122332322211100 000111111      11347899999764 444432 222 22345566666666652


Q ss_pred             HcCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        577 KNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       577 ~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      .  ..+     .+...+|+..........+|+++||||||.++|++|||++.++..|..|++++..
T Consensus       308 ~--~~~-----~~~~~~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~  366 (538)
T 2aqj_A          308 L--SDN-----QPLNQIKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD  366 (538)
T ss_dssp             C--CTT-----CCCEEEECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB
T ss_pred             C--CCC-----CCceEEeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc
Confidence            1  111     1223456654444434569999999999999999999999999999999988763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.58  E-value=4.2e-14  Score=177.53  Aligned_cols=189  Identities=8%  Similarity=0.096  Sum_probs=118.3

Q ss_pred             cceeeechHHHHHHHHHhccC-C-eEEecceEEEEeC--Ce----EEEcCCcEEEeeEEEecCCCCCCCCC----c----
Q psy10545        438 GYYSICSKHLNSYLIRALGIN-N-FLFNNKTVEIITP--TS----IRINNKKIINANCIIDGRGLKNSQFD----G----  501 (1428)
Q Consensus       438 ~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~~i~~--~~----v~l~~g~~~~a~lvI~AdG~~S~~~~----~----  501 (1428)
                      ..+.+++..|.+.|.+.+.+. | .++.+ +|+++..  ++    |++.+|.+++|++||+|||.+|....    .    
T Consensus       187 ~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~  265 (550)
T 2e4g_A          187 YAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLD  265 (550)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEE
T ss_pred             cceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCccc
Confidence            357899999999999999887 7 67777 8998863  22    66778888999999999999875211    0    


Q ss_pred             -----ceEEEEEEEEEecCCcC-CCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHH
Q psy10545        502 -----IYQIFLGQQWNLSSPHG-LDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYA  575 (1428)
Q Consensus       502 -----~~q~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~  575 (1428)
                           ..+..+...+....+.. .........      ...++.|++|+++ ...++....+  ...+.+...+.+.+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~ipl~~-~~~~g~v~~~--~~~~~~~~~~~l~~~~  336 (550)
T 2e4g_A          266 MSDHLLNDSAVATQVPHDDDANGVEPFTSAIA------MKSGWTWKIPMLG-RFGTGYVYSS--RFATEDEAVREFCEMW  336 (550)
T ss_dssp             CTTTCCCCEEEEEEEECCHHHHCCCSSEEEEE------CSSEEEEEEECSS-EEEEEEEECT--TTSCHHHHHHHHHHHT
T ss_pred             ccccccccceEEEeecccCCcccCCCceeeee------cCCceEEEccCCC-ccceEEEEec--CCCChHHHHHHHHHhh
Confidence                 01123333322221100 000101000      1235688999976 3444433322  2234555556665554


Q ss_pred             HHcCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        576 IKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                         +.. ..+  .+...+|+..........+|+++||||||.++|++|||++.++..|..|++++..
T Consensus       337 ---~~~-p~l--~~~~~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~  397 (550)
T 2e4g_A          337 ---HLD-PET--QPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD  397 (550)
T ss_dssp             ---TCC-TTT--SCCEEEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ---CcC-ccc--CCCceEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc
Confidence               222 011  1223445544443334568999999999999999999999999999999988764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.58  E-value=8.2e-14  Score=173.99  Aligned_cols=189  Identities=11%  Similarity=0.107  Sum_probs=121.5

Q ss_pred             cceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce----EEEcCCcEEEeeEEEecCCCCCCCCC----c-----
Q psy10545        438 GYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS----IRINNKKIINANCIIDGRGLKNSQFD----G-----  501 (1428)
Q Consensus       438 ~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~----v~l~~g~~~~a~lvI~AdG~~S~~~~----~-----  501 (1428)
                      .++.++|..|.+.|.+.+.+.| .++.+ +|+++..  ++    |++.+|.+++|++||+|||.+|....    .     
T Consensus       166 ~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~  244 (511)
T 2weu_A          166 YAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSF  244 (511)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEEC
T ss_pred             eeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCccc
Confidence            4678999999999999998888 67777 8988863  22    66778888999999999999976311    0     


Q ss_pred             ----ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHH
Q psy10545        502 ----IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK  577 (1428)
Q Consensus       502 ----~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~  577 (1428)
                          ....++...+....+............      ..+++|++|+++ ...++... +. ...+.+...+.+.+++  
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~P~~~-~~~~g~~~-~~-~~~~~~~~~~~l~~~~--  313 (511)
T 2weu_A          245 SDVLPNNRAVALRVPRENDEDMRPYTTATAM------SAGWMWTIPLFK-RDGNGYVY-SD-EFISPEEAERELRSTV--  313 (511)
T ss_dssp             TTTCCCCEEEEEEEECSSGGGCCSSEEEEEE------TTEEEEEEECSS-EEEEEEEE-CT-TTSCHHHHHHHHHHHH--
T ss_pred             cccCcccceEEEEeccCCCCCCCcceeceec------CCCcEEEEECCC-ceEEEEEE-CC-CCCCHHHHHHHHHHHh--
Confidence                012233333333222101111111111      124789999976 45554432 22 2235556666666655  


Q ss_pred             cCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        578 NRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       578 ~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                       +... .+  .+...+|+..........+|+++||||||.++|++|||++.++..|..|++++..
T Consensus       314 -~~~~-~~--~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~  374 (511)
T 2weu_A          314 -APGR-DD--LEANHIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG  374 (511)
T ss_dssp             -CTTC-TT--SCCEEEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC
T ss_pred             -Cccc-cc--ccceeEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc
Confidence             3321 11  2234455544444333558999999999999999999999999999999998874

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.58  E-value=2.8e-14  Score=179.77  Aligned_cols=293  Identities=12%  Similarity=0.055  Sum_probs=155.7

Q ss_pred             CCCChHHHHHHHhcCCchHHHHHHHHhhc------CCeEEEEcCCCCCcccccccccCCCCc-ccCcchhHHHHHHHHHh
Q psy10545        305 NKLSFFDKIRIFSGAGIGGIALAIRLQTA------GISTIILEQRDKLSWINLKFQFGVGYP-NTNQGLWNSIIAWYLKQ  377 (1428)
Q Consensus       305 ~~~~~~~~~~ii~g~~~~~~~~a~~La~~------G~~V~lie~~~~~~~~~~~~~~~~~~~-~~g~Gl~~~~~~~~~~~  377 (1428)
                      ++...+++|+||+|+|++|+++|+.|++.      |++|+|||+.+.+           +.. .+|+.+.+..+. .   
T Consensus        29 ~~~~~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~-----------g~~~~~g~~l~~~~l~-~---   93 (584)
T 2gmh_A           29 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI-----------GAHTLSGACLDPRAFE-E---   93 (584)
T ss_dssp             CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST-----------TTTCCCCCEECTHHHH-H---
T ss_pred             ccccccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC-----------CCccccccccCHHHHH-H---
Confidence            33334567999999999999999999999      9999999998765           222 345555444322 1   


Q ss_pred             cCCCceEEEeecCCCCCCceeeeccCCcCcccccccccc-----cccccCccEEEcCCCc--ccccccceeeechHHHHH
Q psy10545        378 YNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPL-----ITYSWPSYQVKFPKFN--RKIFSGYYSICSKHLNSY  450 (1428)
Q Consensus       378 ~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~  450 (1428)
                      ..++                   |..     ...|+...     ..+-.....+.++...  .......++++|..|.+.
T Consensus        94 ll~~-------------------~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~  149 (584)
T 2gmh_A           94 LFPD-------------------WKE-----KGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSW  149 (584)
T ss_dssp             HCTT-------------------HHH-----HTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHH
T ss_pred             HHHH-------------------HHh-----cCCceeeeechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHH
Confidence            1111                   000     00000000     0000000122222100  011224688999999999


Q ss_pred             HHHHhccCC-eEEecceEEEEeCC--e----EEEc------CC---------cEEEeeEEEecCCCCCC---CC----C-
Q psy10545        451 LIRALGINN-FLFNNKTVEIITPT--S----IRIN------NK---------KIINANCIIDGRGLKNS---QF----D-  500 (1428)
Q Consensus       451 L~~~~~~~~-~~~~~~~v~~i~~~--~----v~l~------~g---------~~~~a~lvI~AdG~~S~---~~----~-  500 (1428)
                      |.+++++.| .++.+++|+++..+  +    |++.      +|         .+++|++||+|||.+|.   .+    . 
T Consensus       150 L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl  229 (584)
T 2gmh_A          150 MGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDL  229 (584)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTT
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCC
Confidence            999998888 68889999988632  2    4444      33         68999999999999975   11    1 


Q ss_pred             ----cceEEEEEEEE--EecCCcCCCCceEEecccCCCCCcceEEEEeeCC--CCceEEEeEEeccCC--CCCH-HHHHH
Q psy10545        501 ----GIYQIFLGQQW--NLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLT--PNSLMIEDTRYTKKP--FLKI-DMLKK  569 (1428)
Q Consensus       501 ----~~~q~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~--~~~~~v~~~~~~~~~--~~~~-~~~~~  569 (1428)
                          ......++...  ++.........+...++.+..+......|++|+.  ++.++++........  ..+. +.+  
T Consensus       230 ~~~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l--  307 (584)
T 2gmh_A          230 RANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREF--  307 (584)
T ss_dssp             TTTSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCCHHHHH--
T ss_pred             CCCCCchhHHhhhhhheecCcccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCcccccCChHHHH--
Confidence                12223334322  2221111112222222211111112223445666  678777666543321  1122 233  


Q ss_pred             HHHHHHHH--cC--Cccceeeeeee-eeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhc
Q psy10545        570 SIKDYAIK--NR--WKLKNIEREEI-GSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  640 (1428)
Q Consensus       570 ~l~~~~~~--~~--~~~~~~~~~~~-~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~  640 (1428)
                        +++...  +.  +..++++.... ...|...........+|++|||||||.++|++|||++.|+..|..+++++
T Consensus       308 --~~~~~~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L  381 (584)
T 2gmh_A          308 --QRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESI  381 (584)
T ss_dssp             --HHHTTSTTTHHHHTTCEEEEEEEEEEECCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHH
T ss_pred             --HHHHhChHHHHHhCCCeEEEecceEccCCCcccCCccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHH
Confidence              332210  00  01123332222 23344333223335589999999999999999999775555444444444

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.54  E-value=1.1e-13  Score=162.41  Aligned_cols=267  Identities=13%  Similarity=0.081  Sum_probs=142.6

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccC-CCCCCcceEEE----------eCCeEEcccccccCC-chHHHHH
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR-DKPGGRAYVYK----------QDGFIFDAGPTVITD-PNSIKLL  776 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~-~~~GGr~~s~~----------~~G~~~d~G~~~i~~-~~~~~~l  776 (1428)
                      +..+||+|||||++||+||+.|+++|++|+|||++ +++||++.+++          ..++.+|.|++++.. ...+.++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~  121 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL  121 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence            34689999999999999999999999999999999 99999999988          357899999998864 3467889


Q ss_pred             HHHhcccccccceEE--e----------------cCC-------------------ceEEEeCCCcEEEecCCHHHHHHH
Q psy10545        777 FDLSKNRMENYVNLL--P----------------IKP-------------------FYRLYWGKEKFLNYEDNIKDLEKQ  819 (1428)
Q Consensus       777 ~~~lG~~l~~~l~~~--~----------------~~~-------------------~~~~~~~~g~~~~~~~~~~~~~~~  819 (1428)
                      ++++|+.........  +                .+.                   .....+.+|..+.... .......
T Consensus       122 ~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~-~~~~~~~  200 (376)
T 2e1m_A          122 IDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQ-YATDPSS  200 (376)
T ss_dssp             HHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHH-HHHCTHH
T ss_pred             HHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccc-cccCHHH
Confidence            999996532211000  0                000                   1112223343332210 0000111


Q ss_pred             HHh---hCccc-HHHHHHH-HHHHHHHHHHhhhh-h--cccCcccHHHHHHhhHHH-HhhcccCCHHHHHH-hhcCCHHH
Q psy10545        820 IAK---FNLND-IKGYRLF-LNYSKKVFKEGYLS-F--ASKSFLTINDMLFILPKL-IKIKAWKSVYSIVS-QFIKNDYL  889 (1428)
Q Consensus       820 l~~---~~p~~-~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~-~~~~~~~l  889 (1428)
                      +..   ..+.+ ......+ ...++.+... +.. .  .......+.......... ..+ +..|+.+|+. +...++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-D~~S~~~~L~~~~g~s~~~  278 (376)
T 2e1m_A          201 INEGFHLTGCETRLTVSDMVNQALEPVRDY-YSVKQDDGTRVNKPFKEWLAGWADVVRDF-DGYSMGRFLREYAEFSDEA  278 (376)
T ss_dssp             HHHHTTCCGGGGGSCHHHHHHHHHHHHHHH-HEEEETTTEEEECCHHHHHHHHHHHHHHH-TTCBHHHHHHHTSCCCHHH
T ss_pred             hccccCCchhhcccCHHHHHHHHHHHHHHh-hhhccccccccccccchhhccchHHHHHH-hCCCHHHHHhhccCCCHHH
Confidence            111   11110 0011111 1122222211 110 0  000000011111111111 123 4889999998 55556666


Q ss_pred             HHHHHhhcccccCCCCchhHHHHHHHH--hccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEE
Q psy10545        890 KQAFSFNSLFIGGNPFSTSSIYTLIHA--LEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKV  967 (1428)
Q Consensus       890 ~~~l~~~~~~~g~~p~~~s~~~~~~~~--~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V  967 (1428)
                      ...+.....+ + .....+.+..+...  .......+.++||+++|+++|++.+.   .+|++|++|++|..+++++..+
T Consensus       279 ~~~~~~~~~~-~-~~~~~s~l~~l~~~~~~~~~~~~~~i~GG~~~l~~~l~~~l~---~~i~l~~~V~~I~~~~~gv~v~  353 (376)
T 2e1m_A          279 VEAIGTIENM-T-SRLHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDLR---DQIVMGQRMVRLEYYDPGRDGH  353 (376)
T ss_dssp             HHHHHHHTTC-T-TTTTSBHHHHHHHCSCSCTTCCEEEETTCTTHHHHHHHHHGG---GTEECSEEEEEEEECCCC----
T ss_pred             HHHHHhhcCc-c-ccchhhHHHHHHHhhhhccCCceEEECCcHHHHHHHHHHhcC---CcEEecCeEEEEEECCCceEEE
Confidence            6655432211 1 11244444433322  12233567899999999999998874   6799999999999887764333


Q ss_pred             EecCCcEEEcCEEEEcC
Q psy10545        968 HLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       968 ~~~~G~~i~ad~VV~A~  984 (1428)
                       ..+.......+|.+.+
T Consensus       354 -~~~~~~~~g~~~~~~~  369 (376)
T 2e1m_A          354 -HGELTGPGGPAVAIQT  369 (376)
T ss_dssp             ----------CCEEEEE
T ss_pred             -eCCCcCCCCCeeEEEe
Confidence             3233334555666655

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.46  E-value=1.6e-13  Score=166.90  Aligned_cols=297  Identities=12%  Similarity=0.011  Sum_probs=139.3

Q ss_pred             hhHhhhccCCC-ChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchh-HHHHHHH
Q psy10545        297 KIIRNFYANKL-SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLW-NSIIAWY  374 (1428)
Q Consensus       297 ~~~~~Fl~~~~-~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~-~~~~~~~  374 (1428)
                      ....+|+++.+ +.+..+++|+|+||+|+++|+.|+++|++|+|||+++.+...     .  + ...+.++. ...+. .
T Consensus         7 ~~~~~~~~~~~~~~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-----~--g-~~~~~~~~~~~~~~-~   77 (430)
T 3ihm_A            7 HHHHSSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYS-----G--L-RLLNTVAHNAVTVQ-R   77 (430)
T ss_dssp             ----------------CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGST-----T--S-CCCCCCCBCHHHHH-H
T ss_pred             cccccceeecccCcCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhc-----c--c-ccccchhccchhhh-h
Confidence            45667776653 334567899999999999999999999999999988643111     1  1 11222221 11111 0


Q ss_pred             HHhcCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHH
Q psy10545        375 LKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRA  454 (1428)
Q Consensus       375 ~~~~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~  454 (1428)
                      .....               .   +.|..     ...++..+.++......+.+..   ....++++|++..+...|.++
T Consensus        78 ~~~lg---------------~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~l~~~L~~~  131 (430)
T 3ihm_A           78 EVALD---------------V---NEWPS-----EEFGYFGHYYYVGGPQPMRFYG---DLKAPSRAVDYRLYQPMLMRA  131 (430)
T ss_dssp             HHHTT---------------C---CCSCH-----HHHCEEEEEEEECSSSCEEEEE---EEEEEEBEECHHHHHHHHHHH
T ss_pred             hhhcC---------------h---hhhhh-----hcccccceeEEECCCCccccch---hcCCcceeecHHHHHHHHHHH
Confidence            00110               0   12221     1122222222111111122211   123467889999999999999


Q ss_pred             hccCC-eEEecc-eEEEEeCCeEEEcCCcEEEeeEEEecCCCCCCC--C--C------cceEEEEEEE-EE-ecCCcCCC
Q psy10545        455 LGINN-FLFNNK-TVEIITPTSIRINNKKIINANCIIDGRGLKNSQ--F--D------GIYQIFLGQQ-WN-LSSPHGLD  520 (1428)
Q Consensus       455 ~~~~~-~~~~~~-~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~S~~--~--~------~~~q~~~g~~-~~-~~~~~~~~  520 (1428)
                      +.+.| .++... .+++++.        ...++++||+|||.+|..  .  .      ...|..+... +. +..|.  .
T Consensus       132 ~~~~Gv~v~~~~v~~~~l~~--------~~~~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~--~  201 (430)
T 3ihm_A          132 LEARGGKFCYDAVSAEDLEG--------LSEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAP--I  201 (430)
T ss_dssp             HHHTTCEEEECCCCGGGHHH--------HHTTSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCS--S
T ss_pred             HHHcCCEEEEEecchhhhhh--------hcccCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCC--c
Confidence            98877 343311 1111110        012589999999998751  0  0      1112222222 11 12121  1


Q ss_pred             CceEEecccCCCCCcceEEEEeeCC--CCceEEEeEEeccC------CC----CCHHHHHHHHHHHHHHcCCccce-eee
Q psy10545        521 IPIIMDATVNQKNDEYHFIYTLPLT--PNSLMIEDTRYTKK------PF----LKIDMLKKSIKDYAIKNRWKLKN-IER  587 (1428)
Q Consensus       521 ~~~~~~~~~~~~~~g~~f~~~lPl~--~~~~~v~~~~~~~~------~~----~~~~~~~~~l~~~~~~~~~~~~~-~~~  587 (1428)
                      ..+.+...     .+.+.++++|+.  ++..++........      ..    .+.+++.+.+.+.+..+.....+ +..
T Consensus       202 ~~~~~~~~-----~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (430)
T 3ihm_A          202 RAVTMSFS-----PGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDP  276 (430)
T ss_dssp             CCEEEEEE-----TTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCT
T ss_pred             Ceeeeeec-----CCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhh
Confidence            11111111     122334566642  23333222211111      01    14555555555544432111111 100


Q ss_pred             ee------------eeeecccCCchhhhhccCccc-ccccccccccCCCCChHHHHHHHHHHHhhcccC
Q psy10545        588 EE------------IGSIPIALKNEKIIKFKKTIC-VGLRANLLHATTGYSLPIAIQLAENIAKYSITT  643 (1428)
Q Consensus       588 ~~------------~~~~Pl~~~~~~~~~~~rv~l-vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~  643 (1428)
                      .+            ...+|+..........+|+++ +|||||.++|++|||++.++..|..|++++...
T Consensus       277 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~  345 (430)
T 3ihm_A          277 AEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH  345 (430)
T ss_dssp             TTCEESSSTTSEEEECCCCEEBCSEEECTTSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhccccCccceeecceeecccccccccCCCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc
Confidence            00            124454333332234578887 999999999999999887777777777766643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.28  E-value=2.1e-10  Score=137.97  Aligned_cols=228  Identities=17%  Similarity=0.175  Sum_probs=140.3

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCc--eeEEeccccCccccccccccccCccCccEEEcCCCc
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNH--IWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFN   84 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~--tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (1428)
                      .|||+|||||||||++|+.|++.+  ++|+|+|+++.. .+.  ..+.+..-+..+........+...+....++.+...
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEK   81 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCc
Confidence            599999999999999999999975  899999998766 222  233432211111111223456667778888887654


Q ss_pred             ccc--------CccccceehhHHHHHHHHH---cCCE----------------------------EEEec--------CC
Q psy10545         85 RKI--------FSGYYSICSKHLNSYLIRA---LGQQ----------------------------WNLSS--------PH  117 (1428)
Q Consensus        85 ~~~--------~~~Y~~~~~~~~~~~~~~~---~~~~----------------------------~~~~~--------~~  117 (1428)
                      ..+        +..-.+++...|.+.+.+.   .|.+                            .++++        .+
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A           82 RPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             SCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             eEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccc
Confidence            422        1122367888888887662   1110                            01100        00


Q ss_pred             -------CC--------CceEeeecc--------------cCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHH
Q psy10545        118 -------GL--------DIPIIMDAT--------------VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLK  168 (1428)
Q Consensus       118 -------g~--------~~~~~MD~r--------------~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~  168 (1428)
                             |.        .....+.++              .... ....+.|+.|.+++.+-|-......... ....++
T Consensus       162 S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~  239 (397)
T 3oz2_A          162 SEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSI-APAGYIWVFPKGEGMANVGIGSSINWIH-NRFELK  239 (397)
T ss_dssp             CHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTT-STTEEEEEEEEETTEEEEEEEEETTTSC-SHHHHH
T ss_pred             cHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeecc-CCCceEEEeecccceeEEEEeeccchhh-hhhhHH
Confidence                   11        001111111              1111 2235788899999887765555444444 556677


Q ss_pred             HHHHHHHHHc-CCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHh
Q psy10545        169 KSIKDYAIKN-RWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS  240 (1428)
Q Consensus       169 ~~l~~~l~~~-g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~  240 (1428)
                      +.+.++++.. ++...+..+.+.+.+|+...... -..++++-+|=|||.++|.+|-.+..+.+.+..+|+.+
T Consensus       240 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i  311 (397)
T 3oz2_A          240 NYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMP-ITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVT  311 (397)
T ss_dssp             HHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSC-CEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccccccceeeeeeccccccCcccc-eeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHH
Confidence            7777776653 44456777888999999766321 13468999999999999999988777766665555554

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.12  E-value=2.8e-09  Score=130.62  Aligned_cols=296  Identities=11%  Similarity=0.082  Sum_probs=165.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCcccc-cccc---ccccCccCccEEEc
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQY-MLIK---PLITYSWPSYQVKF   80 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~-~~~~---~~~~~~w~~~~~~~   80 (1428)
                      ..++|++|||||+||+++|+.|++.  +.+|+|||+.+.. ...++|.+.-....+.. +...   ..+...|....++.
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~--G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRR--GLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSS--SCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            4579999999999999999999986  4899999998764 22344432110000000 0011   12334555666666


Q ss_pred             CCCcccc--CccccceehhHHHHHHHHH-------------------cCCE---E-----------EEecCC--------
Q psy10545         81 PKFNRKI--FSGYYSICSKHLNSYLIRA-------------------LGQQ---W-----------NLSSPH--------  117 (1428)
Q Consensus        81 ~~~~~~~--~~~Y~~~~~~~~~~~~~~~-------------------~~~~---~-----------~~~~~~--------  117 (1428)
                      ++....+  +.....++..+|.+.+.+.                   .+..   +           ++++..        
T Consensus        82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            6533322  3334578888888877652                   0111   1           111000        


Q ss_pred             -------CCCc---------eEe------eecccCCCC------------CCceEEEEccCCCCcEEEEEeeecCCCCC-
Q psy10545        118 -------GLDI---------PII------MDATVNQKN------------DEYHFIYTLPLTPNSLMIEDTRYTKKPFL-  162 (1428)
Q Consensus       118 -------g~~~---------~~~------MD~r~~~~~------------~~~~F~Y~lP~~~~~~liE~T~~~~~~~~-  162 (1428)
                             |...         ...      ++...+..+            ..-.|+|++|++++++.|..+........ 
T Consensus       162 s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~  241 (453)
T 3atr_A          162 RSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGYPS  241 (453)
T ss_dssp             CTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSSCCCC
T ss_pred             hhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCCCCCC
Confidence                   1111         001      111111100            01136789999999998888877654332 


Q ss_pred             CHHHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        163 KIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       163 ~~~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      ..+.+++.+.++.  ..+...++++...+.+|+....+. -...+++-+|=||+.++|.+|..+..+.+.|..+|+.|..
T Consensus       242 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~  318 (453)
T 3atr_A          242 IHEYYKKYLDKYA--PDVDKSKLLVKGGALVPTRRPLYT-MAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILS  318 (453)
T ss_dssp             HHHHHHHHHHHHC--TTEEEEEEEEEEEEEEECSSCCSC-SEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh--hhcCCCeEEeccceeccCCCCCCc-eecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            2344444443331  133445677777789998544221 0246899999999999999999999999988888888753


Q ss_pred             c---CCCChhHHHHHHHHhHHHHHhHHHHHHHHHHHhhcccCcchHHHHHHHhc---CChhhHhhh-ccCCCChH
Q psy10545        243 T---NQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYT---LPDKIIRNF-YANKLSFF  310 (1428)
Q Consensus       243 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~f~~---~~~~~~~~F-l~~~~~~~  310 (1428)
                      .   .+.....+.+.-..+.....+.+...+.+.+++    .......|++|++   ++...+.+| ..++.+..
T Consensus       319 ~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  389 (453)
T 3atr_A          319 AFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFL----QKLSNDDINYGMKKKIIKEEDLLEASEKGDLHLS  389 (453)
T ss_dssp             HHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHHHHHHH----TTCCHHHHHHHHHTTSSCHHHHHHHHHHCCCCHH
T ss_pred             HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCcHhHHHHHHHcCCChHHHHHHhhcCCcccc
Confidence            1   222221221111111111112222333344333    2222456888886   899999999 66666543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.11  E-value=1.2e-10  Score=139.40  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=55.4

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...++..|.+.+++.|++|+++++|++|..++++ +.|++.+| ++.||+||+|++.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          142 ATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             EEEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence            34444444   4688999999999999999999999999999887 78988888 899999999998874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.07  E-value=3.8e-10  Score=134.35  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~~~  988 (1428)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++.|++.+|  .++.||.||+|++.+.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            4688999999999999999999999999998766466888888  4899999999998874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.05  E-value=6.7e-10  Score=135.70  Aligned_cols=67  Identities=21%  Similarity=0.338  Sum_probs=58.3

Q ss_pred             ceeeecC-c---hHHHHHHHHHHHHHcCcEEEeCc---eeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKG-G---VGALIKALIKLFQNLGGNLILNS---QVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~g-G---~~~l~~~L~~~l~~~G~~V~~~~---~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+ |   ...++..|.+.+++.|++|++++   +|++|..+++++++|++.+|+++.||.||+|++.+.
T Consensus       148 g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          148 GYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             EEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             EEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            3444544 4   56889999999999999999999   999999999998889999998999999999998874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.99  E-value=3.9e-09  Score=132.18  Aligned_cols=59  Identities=20%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---C--cEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---G--QIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G--~~i~ad~VV~A~~~~~  988 (1428)
                      ...++..|.+.+.++|++|+++++|++|..+++++++|++.+   |  .++.||.||+|+|++.
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            467899999999999999999999999999999988888764   3  4789999999999875

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.98  E-value=1.3e-09  Score=130.85  Aligned_cols=65  Identities=18%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      |..++......+.+.|.+.+++.|++|+++++|++|..++++ +.|++.+| ++.||.||+|++...
T Consensus       123 g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          123 GQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG-FRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             TEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE-EEEEETTE-EEEESEEEECCCCSS
T ss_pred             CEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE-EEEEECCc-EEEeeEEEECCCCcc
Confidence            444556667889999999999999999999999999988886 77888888 899999999998764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.95  E-value=2.9e-09  Score=137.13  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+++.+|   ...++..|.+.+++.|++|+++++|++|..++++ +.|++.+|.++.||.||+|++.+.
T Consensus       405 g~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          405 GITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDC-WLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECCGGGG
T ss_pred             cEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCe-EEEEECCCCEEECCEEEECCCcch
Confidence            34455444   3788999999999999999999999999999988 688888888899999999998773

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.95  E-value=3.6e-10  Score=139.57  Aligned_cols=128  Identities=19%  Similarity=0.221  Sum_probs=84.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ..+++|+|+|++|+.+|+.|++.|++|+|||+.+.....+            ..++.+....  ..              
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~------------~~~~~~~~~~--~l--------------  143 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHN------------VLHLWPFTIH--DL--------------  143 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCC------------EEECCHHHHH--HH--------------
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCC------------cccCChhHHH--HH--------------
Confidence            4578999999999999999999999999999986541000            0111111110  00              


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                           ..++.|.                  +..   .+.      ......+++..+.+.|.+.+.+.| .++.+++|++
T Consensus       144 -----~~~g~~~------------------~~~---~~~------~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~  191 (497)
T 2bry_A          144 -----RALGAKK------------------FYG---RFC------TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTG  191 (497)
T ss_dssp             -----HTTTHHH------------------HCT---TTT------CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEE
T ss_pred             -----HHcCCcc------------------ccc---ccc------ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence                 0000000                  000   000      112346888999999999998877 6888999999


Q ss_pred             EeCC-------eEEE--c-CC--cEEEeeEEEecCCCCCCC
Q psy10545        470 ITPT-------SIRI--N-NK--KIINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       470 i~~~-------~v~l--~-~g--~~~~a~lvI~AdG~~S~~  498 (1428)
                      +..+       .|++  . +|  .+++|++||+|||.+|..
T Consensus       192 i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          192 LQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             EECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             EEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            9742       2566  3 55  479999999999999763

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.92  E-value=3.4e-09  Score=129.36  Aligned_cols=60  Identities=20%  Similarity=0.345  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ....+.+.|.+.+++.|++|+++++|++|..+++++++|++.+|+++.||.||+|++...
T Consensus       132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            357888999999999999999999999999988888899999998899999999998765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.92  E-value=2.1e-09  Score=138.60  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-EEEcCEEEEcCCHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-IFDADIIVSNADII  987 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-~i~ad~VV~A~~~~  987 (1428)
                      |.+++.+|   ...++..|.+.+++.|++|+++++|++|..++++ +.|++.+|+ ++.||.||+|++.+
T Consensus       400 g~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          400 GIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQSQAAKHHATVILATGHR  468 (689)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-CCCCEEESEEEECCGGG
T ss_pred             eEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCCcEEEECCEEEECCCcc
Confidence            44555554   3788999999999999999999999999998887 678888887 89999999999877

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.92  E-value=2.2e-09  Score=129.57  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=55.9

Q ss_pred             ceeeecCch---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGGV---GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG~---~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|.   ..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+| ++.||.||+|++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          162 ATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             EEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            344554443   478899999999999999999999999998888888999888 799999999998864

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.91  E-value=2.5e-08  Score=124.90  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC----eEEEEEecCC---cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN----KVNKVHLKNG---QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~----~v~~V~~~~G---~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+...|.+.+++.|++|+++++|++|..+++    + +.|++.++   .++.||.||.|.+....+++.++
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~-v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lg  190 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAG-VTARLAGPDGEYDLRAGYLVGADGNRSLVRESLG  190 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSE-EEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCcccc-EEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcC
Confidence            45667788888888999999999999999887    6 45666665   68999999999999887777765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.88  E-value=9.4e-09  Score=122.99  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...+...|.+.+++.|++|+++++|++|..+++++.+|++.+| ++.||.||+|++.+.
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            4678899999999999999999999999998888777988888 899999999998874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.84  E-value=2.5e-08  Score=123.85  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecC-Cc--EEEcC-EEEEcCCHHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKN-GQ--IFDAD-IIVSNADIIN  988 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~-G~--~i~ad-~VV~A~~~~~  988 (1428)
                      |...+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+.+ |+  ++.|| .||+|++...
T Consensus       200 g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          200 GGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             TTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             CHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            33489999999999999999999999999998 68888887754 32  58996 9999998764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.83  E-value=2.1e-09  Score=122.26  Aligned_cols=59  Identities=25%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD  769 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~  769 (1428)
                      .+||+|||||++||+||+.|+++|++|+||||++.+||++.+.+..+..+|.|+.++..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~   60 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA   60 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCcccccc
Confidence            37999999999999999999999999999999999999999999999999999988764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.83  E-value=8e-09  Score=136.09  Aligned_cols=66  Identities=27%  Similarity=0.397  Sum_probs=56.5

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...++..|.+.+++.|++|+++++|++|..+++++++|.+.+| ++.||.||+|++.+.
T Consensus       139 g~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          139 GLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             EEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            34444443   4578999999999999999999999999999998888999888 799999999998875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.82  E-value=9.4e-08  Score=115.32  Aligned_cols=232  Identities=13%  Similarity=0.001  Sum_probs=134.6

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCcccc-ccccccc--cCccCccEEEc
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQY-MLIKPLI--TYSWPSYQVKF   80 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~~-~~~~~~~--~~~w~~~~~~~   80 (1428)
                      ...||++|||||+|||++|+.|++.+  .+|+|+|+.+..  ..+.+++|..-...+.. +.++.+.  ...+..+.++.
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   98 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD   98 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence            34699999999999999999999974  799999998765  35666766431111111 1112221  12344455555


Q ss_pred             CC-Cccc-----------cCccccceehhHHHHHHHHHcC-----------------CEEEEe--------c--------
Q psy10545         81 PK-FNRK-----------IFSGYYSICSKHLNSYLIRALG-----------------QQWNLS--------S--------  115 (1428)
Q Consensus        81 ~~-~~~~-----------~~~~Y~~~~~~~~~~~~~~~~~-----------------~~~~~~--------~--------  115 (1428)
                      .. ....           ....+..++..+|.+.+.+...                 ..+.+.        .        
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A           99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence            43 2211           1245778899999998877311                 111111        0        


Q ss_pred             CC--------CCC-ce---------EeeecccCCC-CC-------CceEEEEccCCCCcEEEEEeeecCCC-CCCHHHHH
Q psy10545        116 PH--------GLD-IP---------IIMDATVNQK-ND-------EYHFIYTLPLTPNSLMIEDTRYTKKP-FLKIDMLK  168 (1428)
Q Consensus       116 ~~--------g~~-~~---------~~MD~r~~~~-~~-------~~~F~Y~lP~~~~~~liE~T~~~~~~-~~~~~~~~  168 (1428)
                      .+        |.. .+         .+.+...... ..       .-.++|++|+++++..+..+...+.. ..+.+...
T Consensus       179 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (407)
T 3rp8_A          179 SHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLR  258 (407)
T ss_dssp             TTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHH
T ss_pred             cChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHH
Confidence            00        111 10         1111111110 01       11467899999999888887764332 22334455


Q ss_pred             HHHHHHHHHcCC---------cceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHH
Q psy10545        169 KSIKDYAIKNRW---------KLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKY  239 (1428)
Q Consensus       169 ~~l~~~l~~~g~---------~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~  239 (1428)
                      +.+.+++....-         ....+  ....++|+.....+  ...+++-+|=|++.++|.+|..+..+.+.|..+++.
T Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~  334 (407)
T 3rp8_A          259 ADLSRYFAGWAPPVQKLIAALDPQTT--NRIEIHDIEPFSRL--VRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAV  334 (407)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHSCGGGC--EEEEEEECCCCSCC--EETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHcCCccce--eEEeeEecCCCCce--ecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHH
Confidence            555554332110         11111  23667777654222  246899999999999999999999999999999999


Q ss_pred             hhhc
Q psy10545        240 SITT  243 (1428)
Q Consensus       240 ~~~~  243 (1428)
                      |...
T Consensus       335 L~~~  338 (407)
T 3rp8_A          335 FRQT  338 (407)
T ss_dssp             HHSC
T ss_pred             HhcC
Confidence            9743

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.79  E-value=4.6e-08  Score=123.20  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec--CCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK--NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~--~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.  +|+  ++.||.||+|++...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            6788999999999999999999999999887 888888765  675  689999999998753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.79  E-value=7.8e-09  Score=123.21  Aligned_cols=65  Identities=20%  Similarity=0.303  Sum_probs=53.2

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...+++.|.+.+++.|++|+++++|++|..++++ +.|++.+| ++.||.||+|++.+.
T Consensus       137 ~~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          137 GLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             EEEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-EEEEEEEEECCGGGG
T ss_pred             EEEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECCC-eEEcCEEEEcCCccH
Confidence            33444444   3678899999999999999999999999988776 56888888 599999999998764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.78  E-value=2.7e-08  Score=119.16  Aligned_cols=64  Identities=11%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe----CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        923 IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN----NNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       923 ~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~----~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..++......+.+.|.+.+++.|++|+++++|++|..+    +++ +.|++.+| ++.||.||+|++...
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEECCCCSS
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEECCCCcc
Confidence            33444355778889999999999999999999999877    555 67888777 799999999997654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.77  E-value=4.5e-08  Score=123.13  Aligned_cols=60  Identities=22%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec--CCc--EEEcCEEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK--NGQ--IFDADIIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~--~G~--~i~ad~VV~A~~~~~~  989 (1428)
                      ...+.+.|.+.+++.|++|+++++|++|..++ +++++|++.  +|+  ++.||.||+|++....
T Consensus       249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            46788999999999999999999999999988 888888775  675  6899999999987653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.76  E-value=3.3e-09  Score=127.00  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++ .|++.+| ++.||.||+|++.+.
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCEEEECCChhH
Confidence            6788999999999999999999999999888775 7888877 899999999998864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.76  E-value=6.5e-09  Score=127.27  Aligned_cols=58  Identities=12%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEE---------------eCCeEEEEEecCCcEE--EcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYV---------------NNNKVNKVHLKNGQIF--DADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~---------------~~~~v~~V~~~~G~~i--~ad~VV~A~~~~~  988 (1428)
                      ...+...|.+.+++.|++|+++++|++|..               +++++++|.+.+| ++  .||.||+|++.+.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            458899999999999999999999999998               5667778988888 68  9999999998874

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.75  E-value=6.5e-08  Score=116.30  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++.|++|+++++|++|..++++ +.|.+.+| ++.||.||+|++.+
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCe-EEEEECCC-EEEcCEEEEcCCcC
Confidence            578888999999999999999999999988887 45777666 79999999999886

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.72  E-value=4.7e-08  Score=117.18  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..++..|.+.+++.|++|+++++|++|..++++ +.|++.+| ++.||.||+|++.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCccH
Confidence            678899999999999999999999999988776 56777776 799999999998864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.71  E-value=5.8e-08  Score=110.69  Aligned_cols=41  Identities=29%  Similarity=0.494  Sum_probs=37.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++||+||+.|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            468999999999999999999997 99999999999887743

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.70  E-value=1.1e-07  Score=113.43  Aligned_cols=62  Identities=24%  Similarity=0.429  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|.. ++   .|++.+|+++.||.||.|.+.....++.+..
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~~  168 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP-VG---RLTLQTGEVLEADLIVGADGVGSKVRDSIGF  168 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET-TT---EEEETTSCEEECSEEEECCCTTCHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC---EEEECCCCEEEcCEEEECCCccHHHHHHhcC
Confidence            46677788888888999999999999987 44   5778889899999999999998777766653

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.69  E-value=1.1e-07  Score=114.19  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      +.+.|.+.+  .|++|+++++|++|..++++ +.|++.+|+++.||.||.|.|.....++.+.
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecCCE-EEEEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            344444444  37999999999999988877 5688899999999999999999887776665

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.67  E-value=9.1e-08  Score=115.99  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeE-EEEEecCCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKV-NKVHLKNGQ--IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v-~~V~~~~G~--~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+...|.+.+++.|++|+++++|++|..+++++ +.|.+.+|+  ++.||.||.|.|....++++++.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~  174 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGL  174 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCC
Confidence            4566778888888899999999999999987653 566678887  69999999999988777666653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.67  E-value=2.9e-08  Score=122.40  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+|+++.||.||+|++...
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            5677888899999999999999999999998888899999999999999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.66  E-value=9.9e-08  Score=114.77  Aligned_cols=66  Identities=12%  Similarity=0.285  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEE-EEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVN-KVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~-~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++. |++|+++++|++|..++++++ .|++.+|+++.||.||.|.+.....++.++.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~  174 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLD  174 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSC
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCC
Confidence            46777888888887 899999999999998887743 7888899899999999999998877767653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.64  E-value=9.7e-08  Score=119.70  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CC--cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NG--QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G--~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+...|.+.+++.|++|+++++|++|..+++++++|++. +|  .++.||.||.|.|....++..++
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg  195 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLG  195 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcC
Confidence            4677788888888999999999999999876666888887 67  57999999999998876665554

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.62  E-value=3.5e-07  Score=109.20  Aligned_cols=234  Identities=10%  Similarity=-0.043  Sum_probs=128.4

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCc-cccccc-cc-cc--cCccCccEEEcC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSS-SQYMLI-KP-LI--TYSWPSYQVKFP   81 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~-~~~~~~-~~-~~--~~~w~~~~~~~~   81 (1428)
                      .|++|||||+|||++|+.|++..|+.+|+|+|+.+..  ......++..-... ...... +. +.  ...|....+...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3899999999999999999998667999999998655  23344444321110 001111 22 21  224555555553


Q ss_pred             CCcc--ccCccccceehhHHHHHHHHH---cCCEEEE---------------------e---cC--C-----CCCce---
Q psy10545         82 KFNR--KIFSGYYSICSKHLNSYLIRA---LGQQWNL---------------------S---SP--H-----GLDIP---  122 (1428)
Q Consensus        82 ~~~~--~~~~~Y~~~~~~~~~~~~~~~---~~~~~~~---------------------~---~~--~-----g~~~~---  122 (1428)
                      +...  ....+|..+...+|.+.+.+.   .|.++..                     +   +.  .     |.+..   
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~ad~vV~AdG~~S~R~~l~~~~g~~~~~~~  160 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGR  160 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGCCGGGCSEEEECCGGGGGTCCSSGGGCCCCEEEE
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhcccccCCEEEECCCCCchHHhhhhhcCCCcccCC
Confidence            2111  113457789999999988763   1222211                     0   00  0     11110   


Q ss_pred             Eeeeccc--CCC----------CCCceEEEEccCCCCcEEE--EEee----ecCCCCCCHHHHHHHHHHHHHHcCCccee
Q psy10545        123 IIMDATV--NQK----------NDEYHFIYTLPLTPNSLMI--EDTR----YTKKPFLKIDMLKKSIKDYAIKNRWKLKN  184 (1428)
Q Consensus       123 ~~MD~r~--~~~----------~~~~~F~Y~lP~~~~~~li--E~T~----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~  184 (1428)
                      ...-|+.  ...          ..|..++|.+|+++++..+  +.+-    ....+.++.+...+.+.+++...... .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  239 (381)
T 3c4a_A          161 NKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGG-HG  239 (381)
T ss_dssp             EEEEEEEESSCCSSEEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTT-CC
T ss_pred             ccEEEEecCCCCCcceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCC-ch
Confidence            0011110  000          0233445679998877533  2100    01112335667777777776653211 12


Q ss_pred             EEEEEEEeecCCCCcchhh-cccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhhc
Q psy10545        185 IEREEIGSIPIALKNEKII-KFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITT  243 (1428)
Q Consensus       185 i~~~E~g~iPm~~~~~~~~-~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~~  243 (1428)
                      +++.+....|+....+.+. ...++.-+|=|++.++|.+|+.+..+.+.|..+|+.|...
T Consensus       240 l~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~  299 (381)
T 3c4a_A          240 LVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE  299 (381)
T ss_dssp             CBCCTTTCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS
T ss_pred             hhcCCCcceeeeccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc
Confidence            3222111122211101001 2367999999999999999999999999999999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.60  E-value=3.3e-07  Score=110.74  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++++.+|++.+|+++.||.||++++.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            467888899999999999999999999998888888999999999999999999975

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.59  E-value=1.1e-07  Score=119.15  Aligned_cols=59  Identities=12%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...++..+++.+.++|++|+++++|++|..+++++++|++.   +|+  ++.||.||+|++++.
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            35688888899999999999999999999999888888863   343  699999999999885

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.58  E-value=3.1e-07  Score=113.34  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc---EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ---IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~---~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..++++ +.|++.+|+   ++.||.||.|.+.....++.++.
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~  173 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDDGAG-VTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGF  173 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe-EEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCC
Confidence            356677888888889999999999999998887 447776664   79999999999999888877763

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.57  E-value=2.5e-07  Score=106.21  Aligned_cols=41  Identities=32%  Similarity=0.426  Sum_probs=37.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+||+|||||++||+||+.|+++  |++|+|+|+++.+||.+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            458999999999999999999997  99999999998887744

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.56  E-value=5.8e-07  Score=112.89  Aligned_cols=59  Identities=25%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec--CCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK--NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~--~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...+...|.+.+++.|++|+++++|++|..++ +++++|++.  +|+  ++.||.||+|++...
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            45788999999999999999999999999887 888888775  674  689999999998643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.56  E-value=3.7e-07  Score=112.66  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc---EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ---IFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~---~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..++++ +.|++.+|+   ++.||.||.|.+.....++.++.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~  174 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDEGDH-VVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGF  174 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-EEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCC
Confidence            456677888888889999999999999988877 447777764   79999999999999888877754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.56  E-value=3e-07  Score=114.17  Aligned_cols=105  Identities=13%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             eEEEEccCCCCcEEEEEeeecCCC----CCCHHHHHHHHHHH--HHH-cCCcceeEEEEEEEeecCCCCc--chhh-ccc
Q psy10545        137 HFIYTLPLTPNSLMIEDTRYTKKP----FLKIDMLKKSIKDY--AIK-NRWKLKNIEREEIGSIPIALKN--EKII-KFK  206 (1428)
Q Consensus       137 ~F~Y~lP~~~~~~liE~T~~~~~~----~~~~~~~~~~l~~~--l~~-~g~~~~~i~~~E~g~iPm~~~~--~~~~-~~~  206 (1428)
                      .|+|.+|++++++.|-.++-....    ..+.+.+++.++..  +.+ .. ....+.....+.||+....  +..+ ..+
T Consensus       218 G~~~~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  296 (512)
T 3e1t_A          218 GWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLA-PATRVTTGDYGEIRIRKDYSYCNTSFWKN  296 (512)
T ss_dssp             EEEEEEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHT-TCEECCSSTTSSCEEEESCCEEESCSBCS
T ss_pred             ceEEEEEeCCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHh-cCccccccccccceeeccccccccccccC
Confidence            479999999998777766644322    11233333333211  111 00 0111112223445543210  0000 246


Q ss_pred             CceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545        207 KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT  242 (1428)
Q Consensus       207 ~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~  242 (1428)
                      +++.+|-|+++++|.+|+.+..+.+.|..+++.|..
T Consensus       297 ~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~  332 (512)
T 3e1t_A          297 GMALVGDAACFVDPVFSSGVHLATYSALLVARAINT  332 (512)
T ss_dssp             SEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999988853

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.51  E-value=2e-07  Score=109.21  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEcc----CCCCCCcceE
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQ----RDKPGGRAYV  752 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa----~~~~GGr~~s  752 (1428)
                      ...++||+|||||++||+||+.|++.|++|+|+|+    +..+||....
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            34568999999999999999999999999999999    4588887653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.50  E-value=1.3e-07  Score=113.79  Aligned_cols=60  Identities=13%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      .+.+.|.+.++  +++|+++++|++|..++++ +.|++.+|+++.||.||.|.|.....++.+
T Consensus       129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vR~~l  188 (398)
T 2xdo_A          129 DLRAILLNSLE--NDTVIWDRKLVMLEPGKKK-WTLTFENKPSETADLVILANGGMSKVRKFV  188 (398)
T ss_dssp             HHHHHHHHTSC--TTSEEESCCEEEEEECSSS-EEEEETTSCCEEESEEEECSCTTCSCCTTT
T ss_pred             HHHHHHHhhcC--CCEEEECCEEEEEEECCCE-EEEEECCCcEEecCEEEECCCcchhHHhhc
Confidence            34445555443  3689999999999988776 568888998899999999998876554444

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.49  E-value=9e-07  Score=109.50  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ...++..|.+.+.++|++|+++++|++|..++ ++++|++.   +|+  ++.||.||+|++++.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            46789999999999999999999999999887 45788773   575  789999999999885

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.49  E-value=2.2e-07  Score=115.50  Aligned_cols=57  Identities=12%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCc--EEEeCceeeEEEEeCC-eEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGG--NLILNSQVISIYVNNN-KVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~--~V~~~~~V~~I~~~~~-~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|+  +|+++++|+++..+++ +.+.|++++|+++.||.||+|+|..
T Consensus        87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence            3455566666777787  8999999999998865 3478999999999999999999853

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.48  E-value=1.3e-07  Score=111.63  Aligned_cols=57  Identities=11%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.+.+.+++.|++++++++|++|..++++..+|++++| ++.+|+||+|++...
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            345556677778889999999999999999887333888888 899999999998643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.48  E-value=2.2e-07  Score=111.53  Aligned_cols=65  Identities=12%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-cCCc--EEEcCEEEEcCCHHHHHHHhcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-KNGQ--IFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~~G~--~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+.+.|.+.+.+.|++|+++++|++|..+++..+.|++ .+|+  ++.||.||.|.+.....++.++
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~  170 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIP  170 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcC
Confidence            345667777777789999999999999876433355766 6887  7999999999998876665554

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.48  E-value=2.4e-07  Score=115.41  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHcCc--EEEeCceeeEEEEeCC-eEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        932 ALIKALIKLFQNLGG--NLILNSQVISIYVNNN-KVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~--~V~~~~~V~~I~~~~~-~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+.+.+++.|.  +++++++|+++..+++ +.+.|++++|+++.||.||+|+|..
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            444555666667776  8999999999998765 3478899999999999999999853

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.48  E-value=1.3e-06  Score=109.77  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.|++|+++++|++|..+ ++++++|.+   .+|+  ++.|+.||+|++...
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            678889999999999999999999999986 778888875   4565  589999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.47  E-value=1.3e-06  Score=105.17  Aligned_cols=57  Identities=14%  Similarity=0.248  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++++.+|++.+|+++.||.||++++.
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            467888899999999999999999999999888888999999999999999999975

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.47  E-value=6e-07  Score=98.95  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.|.+.+++. |++++ +++|++|..+++++++|.+.+|+++.||.||+|++.
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~  123 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS  123 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCC
Confidence            34556777788886 89998 679999999998888899999988999999999976

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.46  E-value=1.7e-07  Score=116.60  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=38.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +.++||+|||||++|+++|+.|++.|++|+|+|+++.+||..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw   48 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW   48 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            456899999999999999999999999999999999999854

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.45  E-value=6.8e-07  Score=102.06  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=37.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+||+|||||++||+||+.|++.  |++|+|+|+++.+||.+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            457999999999999999999998  99999999999988744

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.44  E-value=1.8e-06  Score=108.49  Aligned_cols=62  Identities=13%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec------CC---------cEEEcCEEEEcCCHHHHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK------NG---------QIFDADIIVSNADIINTYRN  992 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~------~G---------~~i~ad~VV~A~~~~~~~~~  992 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.      +|         .++.||.||.|.+....+++
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~  221 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAK  221 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHH
Confidence            5677888888999999999999999999876 567788876      33         58999999999998765543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.44  E-value=9.1e-07  Score=106.70  Aligned_cols=64  Identities=23%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHH-cC-cEEEeCceeeEEEEeCCeEEEEEecC---C--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQN-LG-GNLILNSQVISIYVNNNKVNKVHLKN---G--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G-~~V~~~~~V~~I~~~~~~v~~V~~~~---G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+.+ .| ++|+++++|++|.. +++ +.|++.+   |  +++.||.||.|.|.....++.+..
T Consensus       107 ~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~  177 (410)
T 3c96_A          107 GELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHP  177 (410)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cEEEEecCCCCCceEEecCEEEECCCccchhHHHhcC
Confidence            3566677777766 36 58999999999988 554 4466554   7  579999999999998887776653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.42  E-value=4.7e-06  Score=99.35  Aligned_cols=184  Identities=11%  Similarity=0.041  Sum_probs=107.8

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC----CC--cceEEEEE
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ----FD--GIYQIFLG  508 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~----~~--~~~q~~~g  508 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|+++..++    |++.+| +++|+.||.|+|..|..    ..  .......+
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~~~~g  237 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFLPVKG  237 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCEEEEE
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCceeccce
Confidence            55778899999999998888 688889999986432    555555 89999999999998641    11  11222333


Q ss_pred             EEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc-CCCCCHHHHHHHHHHHHHH-cC-Ccccee
Q psy10545        509 QQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK-KPFLKIDMLKKSIKDYAIK-NR-WKLKNI  585 (1428)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~~~  585 (1428)
                      ..+.++.+.......+++       .   ..|+.|..++.+.++.+.... .......+..+.+.+.+.+ ++ +...++
T Consensus       238 ~~~~~~~~~~~~~~~~~~-------~---~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~  307 (382)
T 1ryi_A          238 ECLSVWNDDIPLTKTLYH-------D---HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKV  307 (382)
T ss_dssp             EEEEEECCSSCCCSEEEE-------T---TEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEE
T ss_pred             EEEEECCCCCCccceEEc-------C---CEEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCCce
Confidence            333333332111112211       0   257889877777776643211 1111122223333333333 22 111233


Q ss_pred             eeeeeeeecccCCchhhhhccCcccccccc-----cccccCCCCChHHHHHHHHHHHhhccc
Q psy10545        586 EREEIGSIPIALKNEKIIKFKKTICVGLRA-----NLLHATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       586 ~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA-----~~vhP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      ...-.+..|+.        .++..++|++.     ....+.+|.||..+...++.+++.+..
T Consensus       308 ~~~w~g~~~~t--------~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          308 DRFWAGLRPGT--------KDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             EEEEEEEEEEC--------SSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             eeEEEEecccC--------CCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence            33334556653        24566778763     235678899999999999999988764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.42  E-value=4.7e-07  Score=104.36  Aligned_cols=51  Identities=14%  Similarity=0.128  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcC
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~  984 (1428)
                      +...+.+.+++.|++++.++ |+.+..+++++..|++.+|+++.+|.||+++
T Consensus       182 ~~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~  232 (304)
T 4fk1_A          182 LSQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVP  232 (304)
T ss_dssp             CCHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECC
T ss_pred             chhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeee
Confidence            44566777888999998764 8888877777788999999999999888876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.42  E-value=1.1e-06  Score=101.86  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC----C--cEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN----G--QIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~----G--~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..+++++.+|++.+    |  +++.+|.||++++.
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence            45677788888889999999999999998776777787754    4  57999999999964

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.41  E-value=1.5e-06  Score=106.94  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++++. |++.+|+++.+|.||+|++..
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA-RVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEE-EEEESSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEE-EEEeCCCEEEcCEEEECCCCC
Confidence            467788899999999999999999999988777744 778899999999999999753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.41  E-value=2.1e-06  Score=108.69  Aligned_cols=58  Identities=12%  Similarity=0.110  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+.+.|++|++++.|++|..+++++.+|.+   .+|+  .+.|+.||+|++...
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            578899999999999999999999999998898888765   4675  489999999998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.39  E-value=4.3e-07  Score=111.32  Aligned_cols=57  Identities=12%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEE-ecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVH-LKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~-~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..++++.+.|+ +++|+ +.+|.||+|++..
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence            456788899999999999999999999998765546788 88997 9999999999753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.38  E-value=8e-07  Score=103.18  Aligned_cols=52  Identities=21%  Similarity=0.205  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+.+++.|+++++ ++|++|..+++. +.|.+.+|+++.+|.||+|++..
T Consensus        73 ~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~-~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           73 IKVFNKHIEKYEVPVLL-DIVEKIENRGDE-FVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHTTTCCEEE-SCEEEEEEC--C-EEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHcCCEEEE-EEEEEEEecCCE-EEEEECCCCEEEcCEEEECcCCC
Confidence            34455556677899999 899999987765 67888888899999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.38  E-value=2.5e-06  Score=105.20  Aligned_cols=55  Identities=24%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD~Vi~A~G~  286 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENC-YNVVLTNGQTICADRVMLATGR  286 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSS-EEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCE-EEEEECCCcEEEcCEEEEeeCC
Confidence            567788888899999999999999999988776 5788899989999999999975

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.37  E-value=6.6e-07  Score=104.67  Aligned_cols=52  Identities=15%  Similarity=0.257  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+.+.+.+++.|++++++++|++|..+++. +.|.+.+|+++.+|.||+|++.
T Consensus        68 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~lv~AtG~  119 (335)
T 2zbw_A           68 VKGLVEQVAPFNPVYSLGERAETLEREGDL-FKVTTSQGNAYTAKAVIIAAGV  119 (335)
T ss_dssp             HHHHHHHHGGGCCEEEESCCEEEEEEETTE-EEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEECCCE-EEEEECCCCEEEeCEEEECCCC
Confidence            334455566668999999999999988774 6788888888999999999976

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.37  E-value=7.8e-07  Score=111.19  Aligned_cols=42  Identities=26%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +.++||+|||||++||++|+.|++.|++|+|+|+++.+||.+
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w   55 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   55 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            446899999999999999999999999999999999999865

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.36  E-value=2.8e-06  Score=106.74  Aligned_cols=58  Identities=14%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+.+.|++|+++++|++|..+++++.+|.+   .+|+  .+.|+.||+|++...
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            578899999998899999999999999999999888876   3675  689999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.35  E-value=1.2e-06  Score=105.46  Aligned_cols=52  Identities=13%  Similarity=0.126  Sum_probs=43.5

Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +.+|+++++|+++...++..+.|+++||+++.||.||-|-|.....++.+..
T Consensus       123 ~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~  174 (412)
T 4hb9_A          123 ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYLP  174 (412)
T ss_dssp             TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCHHHHHHST
T ss_pred             cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcchHHHhCC
Confidence            4579999999999876554477899999999999999999998887766653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.34  E-value=6.5e-07  Score=105.92  Aligned_cols=54  Identities=13%  Similarity=0.274  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +.+.+.+.+++.|++++++++|++|..++++.+.|.+.+|+++.+|.||+|++.
T Consensus        76 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~  129 (360)
T 3ab1_A           76 LVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGL  129 (360)
T ss_dssp             HHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCC
Confidence            334455566677899999999999998765346788888989999999999976

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.33  E-value=5.2e-07  Score=105.25  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+...+.+.+++.|++++++++|++|..++++.+.|.+.+|+ +.+|+||+|++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           68 ELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            344455566667789999999999999887644778888885 999999999976

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.33  E-value=2.3e-06  Score=105.74  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.|.+.+++ .|++| ++++|++|..+++++++|.+.+|+++.||.||+|+|..
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            4567788888887 59999 57899999999999889999999999999999999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.31  E-value=2.8e-06  Score=105.67  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEE-eCC------eEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYV-NNN------KVNKVHLK---NGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~-~~~------~v~~V~~~---~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+.+.|.+.+++ .|++|+++++|++|.. +++      ++.+|.+.   +|+  ++.|+.||+|++...
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            4567778888888 6999999999999998 545      78888764   565  689999999998764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.30  E-value=1.8e-06  Score=103.90  Aligned_cols=57  Identities=21%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceee---------EEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVI---------SIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~---------~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...+...|.+.+++.|++|+++++|+         +|..+++++ +|++.+| ++.||.||+|++.+.
T Consensus       171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeE-EEEECCc-EEECCEEEECCCccH
Confidence            36788999999999999999999999         888777764 7877777 899999999998874

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.30  E-value=2.2e-06  Score=107.08  Aligned_cols=58  Identities=17%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++.|++++.+ +|++|..++ +.++.|++.+|+++.||.||.|.|....
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            678888999999999999999 899998864 4467888989988999999999987654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.29  E-value=6.8e-06  Score=102.78  Aligned_cols=228  Identities=12%  Similarity=0.071  Sum_probs=117.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCccc-cccccccccCc-------cCcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQ-YMLIKPLITYS-------WPSY   76 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~-~~~~~~~~~~~-------w~~~   76 (1428)
                      .++||+|||||++||++|+.|++.+  ++|+|||+.+..  ..+..+++..-...+. .+.++.+....       |...
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~  125 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI  125 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence            4689999999999999999999964  799999988655  2444444432111000 01122222221       1111


Q ss_pred             ---EEEcCCCccccCccc-cceehhHHHHHHHHH-------------------cCC--EEEE---------ecCC-----
Q psy10545         77 ---QVKFPKFNRKIFSGY-YSICSKHLNSYLIRA-------------------LGQ--QWNL---------SSPH-----  117 (1428)
Q Consensus        77 ---~~~~~~~~~~~~~~Y-~~~~~~~~~~~~~~~-------------------~~~--~~~~---------~~~~-----  117 (1428)
                         .+...  .....++| .+++..++.+.|.+.                   .+.  .+.+         +...     
T Consensus       126 ~~~~~~~~--~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          126 FTQGLDFG--LVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCD  203 (570)
T ss_dssp             CTTCCBGG--GSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECS
T ss_pred             cccccccc--ccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcC
Confidence               11000  00113333 457888888877662                   011  1111         1000     


Q ss_pred             ----------CC--------CceEeeecccCCCC-------CCceEEEE-ccCCCCcE-EEEEeeecCC-----CCCCHH
Q psy10545        118 ----------GL--------DIPIIMDATVNQKN-------DEYHFIYT-LPLTPNSL-MIEDTRYTKK-----PFLKID  165 (1428)
Q Consensus       118 ----------g~--------~~~~~MD~r~~~~~-------~~~~F~Y~-lP~~~~~~-liE~T~~~~~-----~~~~~~  165 (1428)
                                |+        ...+..|+..+...       ....++++ +|+++++. -|=.+.+...     ..++.+
T Consensus       204 G~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~  283 (570)
T 3fmw_A          204 GGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLE  283 (570)
T ss_dssp             CSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCSSCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCCCHH
T ss_pred             CCCchHHHHcCCCCccceeeeEEEEEEEEecCCCcceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHH
Confidence                      11        22445555443210       11124444 69988865 2333333222     123555


Q ss_pred             HHHHHHHHHHHHcCCcceeEEE-EEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh
Q psy10545        166 MLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI  241 (1428)
Q Consensus       166 ~~~~~l~~~l~~~g~~~~~i~~-~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~  241 (1428)
                      ++.+.+++.+   +........ .....+|+.......-...+++-+|=|+..++|.+|..+..+.+.|..++..|.
T Consensus       284 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La  357 (570)
T 3fmw_A          284 DLGAAVARVR---GTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLA  357 (570)
T ss_dssp             HHHHHTTSSS---SCCCCCCSCCEEEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---hcccccceeeeeeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHH
Confidence            5555554432   322221111 246678886652110024679999999999999999999988888888888774

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.26  E-value=1.5e-06  Score=100.55  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CCc--EEEcCEEEEcCCH
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NGQ--IFDADIIVSNADI  986 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G~--~i~ad~VV~A~~~  986 (1428)
                      +.+++.|++|+++++|++|..+++++.+|++.  +|+  ++.+|.||++++.
T Consensus       191 ~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          191 KVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             HHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             HHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence            33467899999999999999888887778776  785  7899999999964

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.26  E-value=3e-06  Score=105.07  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++ .|++| ++++|++|..+++++++|.+.+|.++.||.||+|+|..
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            4567788888887 69999 67899999998888889999999899999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.23  E-value=8.3e-07  Score=101.70  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ....+..+...+.+.+.+.+++.|++|+. ++|++|..++    .|++.+|+++.+|.||++++.
T Consensus       165 ~v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~----~v~~~~g~~~~~D~vi~a~G~  224 (297)
T 3fbs_A          165 ETTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAGHA----DVVLADGRSIALAGLFTQPKL  224 (297)
T ss_dssp             EEEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEETTE----EEEETTSCEEEESEEEECCEE
T ss_pred             cEEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeecCC----eEEeCCCCEEEEEEEEEccCc
Confidence            34444444445666778888999999995 8999986332    688899999999999999853

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.23  E-value=1.4e-05  Score=98.87  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=111.1

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC----eEEE---cCCc--EEEeeEEEecCCCCCCC-----CCc---
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT----SIRI---NNKK--IINANCIIDGRGLKNSQ-----FDG---  501 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l---~~g~--~~~a~lvI~AdG~~S~~-----~~~---  501 (1428)
                      ..++...+...|.+.+.+.| .++.+++|+++..+    .|++   .+|+  +++|+.||.|+|..|..     ...   
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~  223 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSP  223 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCS
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcc
Confidence            34789999999999998888 68888999988642    2555   2565  79999999999997541     111   


Q ss_pred             -ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc-----CCCCCHHHHHHHHHHHH
Q psy10545        502 -IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK-----KPFLKIDMLKKSIKDYA  575 (1428)
Q Consensus       502 -~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~  575 (1428)
                       ..+..-|..+.++.+.......++. .   . ++ ..+|++|..++...++.+....     ....+.+.. +.+.+.+
T Consensus       224 ~~i~p~rG~~~~~~~~~~~~~~~~~~-~---~-dg-~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~-~~l~~~~  296 (501)
T 2qcu_A          224 YGIRLIKGSHIVVPRVHTQKQAYILQ-N---E-DK-RIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEI-NYLLNVY  296 (501)
T ss_dssp             SCBCCEEEEEEEEECSSSCSCEEEEE-C---T-TS-CEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHH-HHHHHHH
T ss_pred             cccccceeEEEEECCCCCCceEEEee-c---C-CC-CEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHH-HHHHHHH
Confidence             1112223333333332222233322 1   1 22 3578899887777777654321     112233332 2333333


Q ss_pred             HH-cC--CccceeeeeeeeeecccCCchh---hhhccCccc--ccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545        576 IK-NR--WKLKNIEREEIGSIPIALKNEK---IIKFKKTIC--VGLRANLLHATTGYSLPIAIQLAENIAKYSI  641 (1428)
Q Consensus       576 ~~-~~--~~~~~~~~~~~~~~Pl~~~~~~---~~~~~rv~l--vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~  641 (1428)
                      .+ ++  +...+++..-.|..|+......   ....+.++.  .++..+.+..++|.|+-.+..+|+.+++.+.
T Consensus       297 ~~~~p~~l~~~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~  370 (501)
T 2qcu_A          297 NTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLT  370 (501)
T ss_dssp             HHHBSSCCCGGGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHG
T ss_pred             HHhcCCCCCcccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHH
Confidence            32 33  3333444444577787653211   111234554  4666677778899898776666666665544

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.22  E-value=2.6e-06  Score=105.06  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEe--c-CC--cEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHL--K-NG--QIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~--~-~G--~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++..+.|++  . +|  +++.||.||.|+|....
T Consensus       166 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          166 RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            456677788888889999999999999874  233466766  4 66  57999999999987643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.21  E-value=9.7e-06  Score=102.00  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~  989 (1428)
                      ..+...|.+.+.+.| ++|+++++|++|..+++++++|..   .+|+  ++.|+.||+|++....
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            578889999998889 999999999999999998888754   5676  6899999999987643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.21  E-value=2.9e-06  Score=104.55  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++.+.|++.+|+++.+|.||+|++..
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence            467888899999999999999999999887654467888899899999999999753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.21  E-value=4.4e-06  Score=103.32  Aligned_cols=56  Identities=14%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++..
T Consensus       223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          223 ADAALVLEESFAERGVRLFKNARAASVTRTGAG-VLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSS-EEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEECCCcEEEcCEEEECCCCC
Confidence            467788889999999999999999999887766 46777888899999999999764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.21  E-value=6.7e-06  Score=100.50  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++..
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKG-ARVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE-EEEEECCCeEEEcCEEEECcCCC
Confidence            4577888889999999999999999999988776 56777788899999999999754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.20  E-value=4.3e-06  Score=105.80  Aligned_cols=55  Identities=16%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++   +|++.+|+++.+|.||+|++..
T Consensus       227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~---~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENGA---VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT---EEEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC---EEEECCCCEEEcCEEEEccCCC
Confidence            356788889999999999999999999976544   3778899999999999999753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.20  E-value=8.6e-06  Score=99.63  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCcEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++.|++|+++++| +|..+++++.+|.+. ++.++.||.||+|++....
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            567888888888889999999999 999999988887763 2235789999999987653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.19  E-value=1e-05  Score=102.90  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHc-Cc-EEEeCceeeEEEEeCC---eEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        932 ALIKALIKLFQNL-GG-NLILNSQVISIYVNNN---KVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       932 ~l~~~L~~~l~~~-G~-~V~~~~~V~~I~~~~~---~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      .+...|.+.+++. |+ +|++++.|++|..+++   ++++|..   .+|+  .+.|+.||+|++...
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            4667777778777 99 9999999999998877   8888864   4665  689999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.19  E-value=4.6e-06  Score=101.84  Aligned_cols=55  Identities=9%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++++ .|.+++| ++.||.||+|++.
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v-~v~~~~g-~i~aD~Vv~A~G~  242 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGI-VLETSEQ-EISCDSGIFALNL  242 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCE-EEEESSC-EEEESEEEECSCC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeE-EEEECCC-EEEeCEEEECcCC
Confidence            46778889999999999999999999999877775 7888777 8999999999964

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.18  E-value=8e-06  Score=99.51  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++.+.|++.+|+++.+|.||+|++.
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~  263 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR  263 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence            45778888899999999999999999987654435788889989999999999964

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.17  E-value=4.7e-06  Score=98.81  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..+++. +.|.+.+| ++.+|+||+|++..
T Consensus        88 ~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~~d~vVlAtG~~  142 (369)
T 3d1c_A           88 ETYAEYLQVVANHYELNIFENTVVTNISADDAY-YTIATTTE-TYHADYIFVATGDY  142 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-CEEEEEEEECCCST
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe-EEEEeCCC-EEEeCEEEECCCCC
Confidence            345566777778889999999999999987665 56777777 69999999999865

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=8.2e-06  Score=100.32  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe-EEEEEecCC-cEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNK-VNKVHLKNG-QIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~-v~~V~~~~G-~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++ ++.|++.+| +++.+|.||+|++.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence            467788888899999999999999999875433 467888899 78999999999974

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.16  E-value=5.2e-06  Score=95.86  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=39.8

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+++.|+++++ ++|++|..+++. +.|.+.+|+++.+|.||+|++..
T Consensus        64 ~l~~~~~~~~v~~~~-~~v~~i~~~~~~-~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           64 PWQEQCFRFGLKHEM-TAVQRVSKKDSH-FVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             HHHHHHHTTSCEEEC-SCEEEEEEETTE-EEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHcCCEEEE-EEEEEEEEcCCE-EEEEEcCCCEEECCEEEECCCCC
Confidence            344455667899988 789999988875 56777888899999999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.15  E-value=7.1e-06  Score=86.33  Aligned_cols=53  Identities=13%  Similarity=0.097  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+.+++.|++++++ +|++|..+++. +.|++++| ++.+|.||+|++...
T Consensus        58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~-~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGV-FEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CCCEEEECSSS-EEEECSSC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCE-EEEEECCC-EEEECEEEECCCCCC
Confidence            4455666778889999999 99999987665 67888888 899999999998653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.14  E-value=8.8e-06  Score=98.53  Aligned_cols=57  Identities=19%  Similarity=0.316  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEE--eCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYV--NNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~--~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..  +++++..|++.+|+++.+|.||++++..
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            56778888899999999999999999987  5677778999999999999999999743

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.14  E-value=2.5e-05  Score=97.74  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ..+.+.|.+.+++. |++|+++ +|++|..++ +.+++|++.+|+++.||.||.|.|....
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            56788899999998 9999999 999998754 5567899999988999999999987653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.14  E-value=3.9e-06  Score=103.49  Aligned_cols=57  Identities=16%  Similarity=0.318  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++.+.|++.+|+++.+|.||+|++..
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence            467788889999999999999999999877644467888899899999999999753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.14  E-value=7.3e-06  Score=101.69  Aligned_cols=56  Identities=14%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++. |++|+ +..|+.|..+++++.+|.+.+|+++.||.||+|+|.+
T Consensus       117 ~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          117 TQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence            35677788888874 89995 5699999999999888999999999999999999865

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.13  E-value=3.7e-06  Score=102.50  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC--eEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI--STIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~--~V~VlEa~~~~GGr~~  751 (1428)
                      ..+||+|||||++||+||..|++.|.  +|+|+|+++.+||...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~   48 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN   48 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence            46899999999999999999999999  9999999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.13  E-value=9e-06  Score=96.97  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++..
T Consensus       186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vv~a~G~~  242 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCDLVVSAVGLR  242 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCE-EEEEECCCCEEECCEEEECcCCC
Confidence            3567888999999999999999999999987775 67888899999999999999753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.12  E-value=6e-05  Score=90.41  Aligned_cols=185  Identities=10%  Similarity=-0.034  Sum_probs=102.0

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCCC------CCcceEEEE
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNSQ------FDGIYQIFL  507 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~~------~~~~~q~~~  507 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|+++..+  .   |++.+| +++|+.||.|+|..|..      .........
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~~~~~  247 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPIQSHP  247 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCccccc
Confidence            45667788999999998888 68888999998632  2   566666 79999999999998631      111111111


Q ss_pred             EEEEEecCCcC-CCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc--CCCCCHHHHHHHHHHHHHH-cC-Ccc
Q psy10545        508 GQQWNLSSPHG-LDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK--KPFLKIDMLKKSIKDYAIK-NR-WKL  582 (1428)
Q Consensus       508 g~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~-~~~  582 (1428)
                      +.-+.++ |.. .....+++..        ..+|+.|..++...++.+....  .......+..+.+.+.+.+ ++ +..
T Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~--------~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~  318 (405)
T 2gag_B          248 LQALVSE-LFEPVHPTVVMSNH--------IHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFAR  318 (405)
T ss_dssp             EEEEEEE-EBCSCCCSEEEETT--------TTEEEEECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGG
T ss_pred             eeEEEec-CCccccCceEEeCC--------CcEEEEEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCcccc
Confidence            2111111 211 1122333211        1256788777777777654211  1111112222333333332 22 111


Q ss_pred             ceeeeeeeeeecccCCchhhhhccCcccccccc--ccccc--CCCCChHHHHHHHHHHHhhccc
Q psy10545        583 KNIEREEIGSIPIALKNEKIIKFKKTICVGLRA--NLLHA--TTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       583 ~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA--~~vhP--~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      .++...-.+..|+.        .++..+||+..  +.+..  .+|.||..+..+++.+++.+..
T Consensus       319 ~~~~~~w~g~~~~t--------~d~~p~ig~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~g  374 (405)
T 2gag_B          319 AHVLRTWGGIVDTT--------MDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIAN  374 (405)
T ss_dssp             CEECEEEEEEEEEE--------TTSCCEEEECSSBTEEEEECCGGGCSTTHHHHHHHHHHHHHH
T ss_pred             CCcceEEeeccccC--------CCCCCEecccCCCCEEEEecCCCchhhHHHHHHHHHHHHHhC
Confidence            23333334566652        25677888864  33333  3457888888888888877664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.11  E-value=6e-06  Score=103.25  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---C--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---G--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      .+.+.|.+.+++.   |+++++|++|..+++++ .|++.+   |  +++.||+||.|.+.....++.++.
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v-~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~  204 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHV-RATITDLRTGATRAVHARYLVACDGASSPTRKALGI  204 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECSSCE-EEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeCCEE-EEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcCC
Confidence            4556677777665   99999999999888774 455544   6  479999999999998888777753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.11  E-value=7e-06  Score=98.86  Aligned_cols=51  Identities=22%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++++++++|++|..  +   +|++++|+++.+|.||++++.
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~---~v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--H---EIVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--S---EEEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--C---eEEECCCCEEeeeEEEECCCC
Confidence            56788899999999999999999999953  2   277889999999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.11  E-value=8.4e-06  Score=101.25  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIINT  989 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~~  989 (1428)
                      ...+.+.|.+.+++.|++++.+ +|++|..+ ++.+++|++.+|+++.||.||.|.|....
T Consensus       172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3567888999898999999999 99999885 45567899999988999999999988654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.10  E-value=1.5e-05  Score=97.55  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++ ..|++.+|+ ++.+|.||+|++..
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE-EEEEETTCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe-EEEEEeCCcEEEEcCEEEECCCCC
Confidence            456778888899999999999999999987766 678888998 89999999999653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.09  E-value=7.3e-06  Score=95.30  Aligned_cols=40  Identities=38%  Similarity=0.546  Sum_probs=36.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++||+||..|++.|++|+|+|++ .+||.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   46 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQI   46 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccc
Confidence            4689999999999999999999999999999998 677754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.09  E-value=7.3e-06  Score=104.29  Aligned_cols=66  Identities=15%  Similarity=0.233  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHcCc--EEEeCceeeEEEEeCC---eEEEEEec------CC--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545        931 GALIKALIKLFQNLGG--NLILNSQVISIYVNNN---KVNKVHLK------NG--QIFDADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~--~V~~~~~V~~I~~~~~---~v~~V~~~------~G--~~i~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      ..+.+.|.+.+++.|+  +|+++++|++|..+++   ..+.|++.      +|  +++.||.||.|.|....+++.++.
T Consensus       141 ~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~  219 (639)
T 2dkh_A          141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGR  219 (639)
T ss_dssp             HHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCC
Confidence            4566788888888887  9999999999998752   22455554      46  578999999999999888877764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.08  E-value=8.1e-05  Score=95.57  Aligned_cols=59  Identities=7%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +..++...+.+.|.+.+++.| .++.+++|+++..  +.  |++.+|.+++|+.||.|+|..|.
T Consensus       411 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          411 GGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             CeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            456788899999999998888 7888999999863  23  56667788999999999999865

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.06  E-value=1.1e-06  Score=102.19  Aligned_cols=42  Identities=26%  Similarity=0.424  Sum_probs=38.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHh--CCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQT--AGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~--~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..+||+|||||++||+||++|++  .|++|+|+|+++.+||.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            46899999999999999999975  5999999999999999775

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.04  E-value=7.3e-06  Score=98.58  Aligned_cols=56  Identities=20%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|++++.|++|..++ ++.+|++.+|+++.||.||++++..
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG-QLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECSS-SCCEEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcCEEEEeeCCe
Confidence            4567888888999999999999999998654 5578999999999999999999753

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.03  E-value=7.9e-06  Score=103.33  Aligned_cols=58  Identities=12%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHc--CcEEEeCceeeEEEEeCC---eEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545        931 GALIKALIKLFQNL--GGNLILNSQVISIYVNNN---KVNKVHL---KNGQ--IFDADIIVSNADIIN  988 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~--G~~V~~~~~V~~I~~~~~---~v~~V~~---~~G~--~i~ad~VV~A~~~~~  988 (1428)
                      ..+...|.+.+++.  |++|+.++.|++|..+++   ++.+|..   .+|+  .+.|+.||+|++...
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g  233 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV  233 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence            35677788888887  999999999999999877   8888865   3554  589999999998653

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.03  E-value=2.5e-05  Score=97.13  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHHHHH
Q psy10545        931 GALIKALIKLFQN-LGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADIINTY  990 (1428)
Q Consensus       931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~~~~  990 (1428)
                      ..+.+.|.+.+++ .|++++.+ .|++|..++ +.++.|++.+|+++.||.||.|.|.....
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            5677888888888 89999999 599998864 44568888888789999999999886543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.02  E-value=1e-05  Score=99.79  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=38.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++||+||..|++. ++|+|+|+++.+||...
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            468999999999999999999999 99999999999999765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.98  E-value=0.00018  Score=92.52  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=47.7

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCc-EEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKK-IINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~-~~~a~lvI~AdG~~S~  497 (1428)
                      ...++...+.+.|.+.+.+.| .++.+++|+++..++    |++.+|. +++|+.||.|+|..|.
T Consensus       406 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          406 GGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             CeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            445678899999999998888 788899999987432    5666776 8999999999999866

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.98  E-value=2.2e-06  Score=104.78  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.+.+.+++.|++|+++++|++|..+++++..|.+ +|+++.+|.||+|++..
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCC
Confidence            3567888899999999999999999999977777666766 78899999999999754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.98  E-value=1.1e-05  Score=92.90  Aligned_cols=52  Identities=12%  Similarity=0.164  Sum_probs=40.7

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeC--CeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNN--NKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~--~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+++.|++++++++|+.|..++  ++.+.|.+++|+++.+|.||+|++..
T Consensus        61 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           61 ALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            34445566789999999999997653  22367888889899999999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.96  E-value=0.00011  Score=87.39  Aligned_cols=185  Identities=15%  Similarity=0.138  Sum_probs=102.7

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCCC------CC-cceEEE
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNSQ------FD-GIYQIF  506 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~~------~~-~~~q~~  506 (1428)
                      ...++...+.+.|.+.+++.| .++.+++|+++..  +.  |++.+| +++|+.||.|+|..|..      .. ......
T Consensus       148 ~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~p~  226 (381)
T 3nyc_A          148 GADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPK  226 (381)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCCCCCCEEE
T ss_pred             CceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCCCCceeee
Confidence            456788999999999998888 6788899988863  22  555555 89999999999997641      11 112222


Q ss_pred             EEEEEEecCCcCC---CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc---CC-CCCHHHHHHHHHHHHHH-c
Q psy10545        507 LGQQWNLSSPHGL---DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK---KP-FLKIDMLKKSIKDYAIK-N  578 (1428)
Q Consensus       507 ~g~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~---~~-~~~~~~~~~~l~~~~~~-~  578 (1428)
                      -|.-+.++.+...   ..+.+++..      +  .+|+.|.. +.+.++.+....   .. ..+...+.. +.+.+.. .
T Consensus       227 rg~~~~~~~~~~~~~~~~p~~~~~~------~--~~y~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  296 (381)
T 3nyc_A          227 RRSAFIFAPPPGIDCHDWPMLVSLD------E--SFYLKPDA-GMLLGSPANADPVEAHDVQPEQLDIAT-GMYLIEEAT  296 (381)
T ss_dssp             EEEEEEECCCTTCCCTTCCEEEETT------S--SCEEEEET-TEEEEECCCCEECCSSCCCCCHHHHHH-HHHHHHHHB
T ss_pred             EEEEEEECCCcCCCcCccceEEeCC------C--CEEEEeCC-CcEEEeCCcCCCCCcccCCCChHHHHH-HHHHHHhcC
Confidence            2333333333211   122333221      1  14678876 666675443221   11 112223333 2233332 2


Q ss_pred             CCccceeeeeeeeeecccCCchhhhhccCcccccccc---cccc--cCCCCChHHHHHHHHHHHhhccc
Q psy10545        579 RWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRA---NLLH--ATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       579 ~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA---~~vh--P~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      .+...++...-.+..|+..        ++.-+||...   +.++  -..|.||..+...++.+++.+..
T Consensus       297 ~l~~~~~~~~w~G~r~~t~--------D~~p~ig~~~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~g  357 (381)
T 3nyc_A          297 TLTIRRPEHTWAGLRSFVA--------DGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRH  357 (381)
T ss_dssp             SCCCCCCSEEEEEEEEECT--------TSCCEEEECTTSTTEEEEECCTTCTTTTHHHHHHHHHHHHTT
T ss_pred             CCcccceeeeeEEccccCC--------CCCceecCCCCCCCeEEEEcCCChhHhhCHHHHHHHHHHHhC
Confidence            2222233333356666532        3555666542   2222  23467898888888888887764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.96  E-value=1.5e-05  Score=100.38  Aligned_cols=55  Identities=13%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-------------------CCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVN-------------------NNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-------------------~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|+++++++.|++|..+                   +++ +.+++.+|+++.||.||+|++.
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~i~~D~vi~a~G~  265 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGH-LSLTLSNGELLETDLLIMAIGV  265 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCE-EEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCc-EEEEEcCCCEEEcCEEEECcCC
Confidence            567788888899999999999999999873                   454 5577788999999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.96  E-value=9.7e-06  Score=99.38  Aligned_cols=39  Identities=28%  Similarity=0.261  Sum_probs=36.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC-----CeEEEEccCCCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG-----ISTIILEQRDKPGG  748 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G-----~~V~VlEa~~~~GG  748 (1428)
                      .++||+|||||++||+||..|++.|     .+|+|||+++.+|.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~   72 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW   72 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence            4689999999999999999999999     99999999998763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.92  E-value=1.6e-05  Score=98.19  Aligned_cols=57  Identities=7%  Similarity=-0.136  Sum_probs=50.3

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      --..+.+.+.+.+++.|+++++++.|+++...+++ +.|.+.+++++.+|.|++|++-
T Consensus       261 ~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          261 FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDK-ILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCE
T ss_pred             cchhHHHHHHHHHHhhcceeecceEEEEEEecCCe-EEEEEcCCCeEEEEEEEEcccc
Confidence            34678889999999999999999999999998887 6688888889999999999964

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.90  E-value=7e-05  Score=93.10  Aligned_cols=64  Identities=13%  Similarity=-0.014  Sum_probs=48.7

Q ss_pred             HHHcCcEEEeCceeeEEEEe----CCeEEEEEec--CCc--EEEcC-EEEEcCCHHHHHHHhcCCCCCChhHH
Q psy10545        941 FQNLGGNLILNSQVISIYVN----NNKVNKVHLK--NGQ--IFDAD-IIVSNADIINTYRNLLGQYAFGKKKY 1004 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~----~~~v~~V~~~--~G~--~i~ad-~VV~A~~~~~~~~~Ll~~~~~p~~~~ 1004 (1428)
                      +...+.+|++++.|++|..+    ++++++|++.  +|+  ++.|+ .||++++...+...|+-....|+..+
T Consensus       237 ~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L  309 (583)
T 3qvp_A          237 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSIL  309 (583)
T ss_dssp             TTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHH
T ss_pred             hcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHH
Confidence            44568999999999999998    7889999875  564  46776 69999998887776654444455443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.87  E-value=0.0003  Score=83.57  Aligned_cols=186  Identities=12%  Similarity=0.039  Sum_probs=101.8

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCCC------CC--cceEE
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNSQ------FD--GIYQI  505 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~~------~~--~~~q~  505 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|+++..+  .   |++.+| +++|+.||.|+|..|..      ..  .....
T Consensus       144 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~  222 (382)
T 1y56_B          144 GKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKIPIEP  222 (382)
T ss_dssp             CEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSCCCCEE
T ss_pred             eeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcCcCCCe
Confidence            45788899999999998888 68888999998632  2   555555 89999999999998641      11  11122


Q ss_pred             EEEEEEEecCCcCCCC-ceEEecccCCCCCcceEEEEeeCCCCceEEEeEEe-c--cCCCCCHHHHHHHHHHHHHH-cC-
Q psy10545        506 FLGQQWNLSSPHGLDI-PIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRY-T--KKPFLKIDMLKKSIKDYAIK-NR-  579 (1428)
Q Consensus       506 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~-~--~~~~~~~~~~~~~l~~~~~~-~~-  579 (1428)
                      .-+.-+.++.+..... ..+++..     .  ..+|+.|..++ +.++.+.. .  ........+..+.+.+.+.+ ++ 
T Consensus       223 ~~g~~~~~~~~~~~~~~~~~~~~~-----~--~~~y~~p~~~g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~  294 (382)
T 1y56_B          223 YKHQAVITQPIKRGTINPMVISFK-----Y--GHAYLTQTFHG-GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPA  294 (382)
T ss_dssp             EEEEEEEECCCSTTSSCSEEEEST-----T--TTEEEECCSSS-CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHCGG
T ss_pred             eEeEEEEEccCCcccCCCeEEecC-----C--CeEEEEEeCCe-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            2222222332211111 3333321     0  12567888777 66663111 1  11111112223333333332 22 


Q ss_pred             CccceeeeeeeeeecccCCchhhhhccCcccccccc---ccc--ccCCCCChHHHHHHHHHHHhhccc
Q psy10545        580 WKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRA---NLL--HATTGYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       580 ~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA---~~v--hP~~G~G~~~a~~la~~l~~~~~~  642 (1428)
                      +...++...-.+..|+..        ++.-+||...   +.+  --.+|.||..+..+++.+++.+..
T Consensus       295 l~~~~~~~~~~g~r~~t~--------d~~p~ig~~~~~~~~~~~~G~~g~G~~~a~~~g~~la~~i~~  354 (382)
T 1y56_B          295 LKNLLILRTWAGYYAKTP--------DSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITK  354 (382)
T ss_dssp             GGGSEEEEEEEEEEEECT--------TSCCEEEEESSSBTEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEeccccCC--------CCCcEeccCCCCCCEEEEEecCcchHhhhHHHHHHHHHHHhC
Confidence            222234444456666542        3455566543   222  335678899888888888877664

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.86  E-value=6e-06  Score=95.38  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=36.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+|||+|||||++||+||.+|++.|++|+|+|++ .+||.+
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~   44 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQM   44 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCee
Confidence            3699999999999999999999999999999985 677765

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.85  E-value=0.0002  Score=85.21  Aligned_cols=188  Identities=14%  Similarity=0.123  Sum_probs=103.2

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCCC-C-----cceEEEEE
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNSQF-D-----GIYQIFLG  508 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~~-~-----~~~q~~~g  508 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|+++..+  .  |++.+ .+++|+.||.|+|..|..+ .     ......-+
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~a~~vV~A~G~~~~~l~~~~g~~~pl~~~rg  223 (389)
T 2gf3_A          145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN-GSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQ  223 (389)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT-EEEEEEEEEECCGGGHHHHGGGGTEECCCEEEEE
T ss_pred             cEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCC-CEEEeCEEEEecCccHHHHhhhhccCCceEEEEE
Confidence            45777899999999998888 68888999998643  2  45544 4799999999999875421 1     11122223


Q ss_pred             EEEEecCCc-----CCCCceEEecccCCCCCcceEEEEeeCCCC-ceEEEeEEe----ccC---CCC--CHHHHHHHHHH
Q psy10545        509 QQWNLSSPH-----GLDIPIIMDATVNQKNDEYHFIYTLPLTPN-SLMIEDTRY----TKK---PFL--KIDMLKKSIKD  573 (1428)
Q Consensus       509 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~-~~~v~~~~~----~~~---~~~--~~~~~~~~l~~  573 (1428)
                      .-+.++.+.     ....+.++...   .   ...+|+.|..++ .+.++.+..    ...   ...  +.+.. +.+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~p~~~~~~---~---~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  296 (389)
T 2gf3_A          224 VVGFFESDESKYSNDIDFPGFMVEV---P---NGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDE-SNLRA  296 (389)
T ss_dssp             EEEEECCCHHHHBGGGTCCEEEEEE---T---TEEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHH-HHHHH
T ss_pred             EEEEEecCcccccccccCCEEEEeC---C---CCcEEEcCCCCCCcEEEEEcCCCCccCcccccCccCCCHHHH-HHHHH
Confidence            222233221     00122222211   0   125788898776 777764321    111   111  22222 34444


Q ss_pred             HHHH-cCCccceeeeeeeeeecccCCchhhhhccCcccccccc---ccccc--CCCCChHHHHHHHHHHHhhcccC
Q psy10545        574 YAIK-NRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRA---NLLHA--TTGYSLPIAIQLAENIAKYSITT  643 (1428)
Q Consensus       574 ~~~~-~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA---~~vhP--~~G~G~~~a~~la~~l~~~~~~~  643 (1428)
                      .+.+ ++.-..++...-.+..|+..        ++..+||...   +.+..  .+|.||..+..+++.+++.+..+
T Consensus       297 ~~~~~~P~l~~~~~~~w~g~r~~t~--------D~~p~ig~~~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~  364 (389)
T 2gf3_A          297 FLEEYMPGANGELKRGAVCMYTKTL--------DEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTG  364 (389)
T ss_dssp             HHHHHCGGGCSCEEEEEEEEEEECT--------TSCCEEEEETTEEEEEEEECCTTCCGGGHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCCCCCceEEEEEEeccCC--------CCCeEEccCCCCCCEEEEECCccccccccHHHHHHHHHHHcCC
Confidence            4433 22111134433345666432        4556677642   33333  34678998888888888876643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.81  E-value=5e-05  Score=94.11  Aligned_cols=52  Identities=12%  Similarity=0.168  Sum_probs=41.0

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeC--CeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNN--NKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~--~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+.+++.|++++.+++|++|..+.  +..+.|++++|+++.+|+||+|+|..
T Consensus       272 ~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          272 ALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            44455667799999999999997642  22367888899899999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.80  E-value=2.5e-05  Score=92.76  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=36.8

Q ss_pred             HHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        941 FQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +++.|++++++++|++|+.++..   |++++|+++.+|++|+|++.
T Consensus        72 ~~~~~i~~~~~~~V~~id~~~~~---v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           72 YEKNNIKVITSEFATSIDPNNKL---VTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             HHHTTCEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCE
T ss_pred             HHHCCCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEecCC
Confidence            34568999999999999877664   77889999999999999985

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.78  E-value=0.00098  Score=79.55  Aligned_cols=58  Identities=14%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ...++...+.+.|.+.+.+.| .++.+++|+++..  +.  |+.. +.+++|+.||.|+|..|.
T Consensus       147 ~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~-~g~i~a~~VV~A~G~~s~  209 (397)
T 2oln_A          147 GGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTD-RGTYRAGKVVLACGPYTN  209 (397)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEES-SCEEEEEEEEECCGGGHH
T ss_pred             CCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEEC-CCEEEcCEEEEcCCcChH
Confidence            346788889999999998888 6888999999864  23  3443 458999999999998754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.75  E-value=5.1e-05  Score=96.65  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHh-----CCCeEEEEccCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQT-----AGISTIILEQRDKP  746 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~-----~G~~V~VlEa~~~~  746 (1428)
                      .++||+|||||++||++|..|++     .|++|+|+|+.+.+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            46899999999999999999999     99999999997643

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.73  E-value=0.00022  Score=87.98  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHcC-cEEEeCceeeEEEEeC-C-eEEEEEec--CC-----cEEEcCEEEEcCCHHHHHHHhc
Q psy10545        934 IKALIKLFQNLG-GNLILNSQVISIYVNN-N-KVNKVHLK--NG-----QIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       934 ~~~L~~~l~~~G-~~V~~~~~V~~I~~~~-~-~v~~V~~~--~G-----~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      ..++.+.+.++| ++|++++.|++|..++ + ++++|++.  +|     .++.|+.||+|++...+.+.|+
T Consensus       224 ~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~  294 (504)
T 1n4w_A          224 DKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLV  294 (504)
T ss_dssp             TTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHH
Confidence            334445555665 9999999999999985 3 78999874  56     3688999999999887665444

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.73  E-value=1.8e-05  Score=98.80  Aligned_cols=59  Identities=17%  Similarity=0.089  Sum_probs=46.9

Q ss_pred             cCcEEEeCceeeEEEEeCCeEEEEEecCC---cEEEcCEEEEcCCHHHHHHHhcCCCCCChh
Q psy10545        944 LGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADIIVSNADIINTYRNLLGQYAFGKK 1002 (1428)
Q Consensus       944 ~G~~V~~~~~V~~I~~~~~~v~~V~~~~G---~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~ 1002 (1428)
                      .+.+|.+++.|++|..+++++++|...+.   .++.|+.||++++...+.+.|+.....+..
T Consensus       224 ~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig~~~  285 (526)
T 3t37_A          224 KNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIGPHD  285 (526)
T ss_dssp             TTEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEECHH
T ss_pred             CCeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCCchh
Confidence            46899999999999999999999876432   357899999999999888877655444443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.70  E-value=3.9e-06  Score=102.22  Aligned_cols=54  Identities=17%  Similarity=0.192  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        444 SKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       444 r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ...+.+.|.+++.+.| .++.+++|+++..  +.   |++.+|.+++|+.||.|+|..|.
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~  192 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSV  192 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcC
Confidence            5788899999998888 6888999998862  32   67778877999999999999963

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.69  E-value=1.6e-05  Score=91.79  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=32.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      +|||+|||||+|||+||.+|++.|++|+|+|+...
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            58999999999999999999999999999999753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.69  E-value=2.5e-05  Score=93.62  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=45.6

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ...+..+.+.|.+.+.+.| .++.+++|+++..  +.  |++.+| +++||.||.|+|..|.
T Consensus       128 ~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          128 DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSI  188 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccC
Confidence            3567789999999998878 6888999999863  22  566666 8999999999999964

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.64  E-value=0.0002  Score=88.85  Aligned_cols=67  Identities=16%  Similarity=0.047  Sum_probs=48.8

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEe----C-CeEEEEEecC--C---cEEEc-CEEEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVN----N-NKVNKVHLKN--G---QIFDA-DIIVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~----~-~~v~~V~~~~--G---~~i~a-d~VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      |...+...+.+|++++.|++|..+    + +++++|++.+  |   .++.| +.||++++...+.+.|+-....|+..
T Consensus       214 L~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~  291 (566)
T 3fim_B          214 LRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDEND  291 (566)
T ss_dssp             HHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHH
T ss_pred             hhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHH
Confidence            333344568999999999999988    4 5788998753  4   35677 67999999988887665544445443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.64  E-value=0.00044  Score=81.77  Aligned_cols=58  Identities=16%  Similarity=-0.068  Sum_probs=45.9

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ...++...+.+.|.+.+.+.| .++.+++|+++..+  .  |++.+| +++|+.||.|+|..|.
T Consensus       143 ~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          143 SGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             CcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence            345778889999999998888 68888999998643  2  555555 5999999999998865

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.62  E-value=0.00057  Score=85.26  Aligned_cols=190  Identities=16%  Similarity=0.175  Sum_probs=98.3

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcC---C--cEEEeeEEEecCCCCCCC----CC----
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINN---K--KIINANCIIDGRGLKNSQ----FD----  500 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~---g--~~~~a~lvI~AdG~~S~~----~~----  500 (1428)
                      +.++...+...|.+.+.+.| .++.+++|+++..  +.   |++.|   |  .+++|+.||.|+|..|..    ..    
T Consensus       165 g~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~  244 (561)
T 3da1_A          165 YRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHG  244 (561)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCCCS
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCCCC
Confidence            46788999999999998888 7888899998863  22   55543   3  479999999999997631    11    


Q ss_pred             cceEEEEEEEEEecCCc-CCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEec--c---CCCCCHHHHHH---HH
Q psy10545        501 GIYQIFLGQQWNLSSPH-GLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYT--K---KPFLKIDMLKK---SI  571 (1428)
Q Consensus       501 ~~~q~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~--~---~~~~~~~~~~~---~l  571 (1428)
                      ...+..-|..+.+..+. .....+++...   . +| .++|++|. ++...++.|...  .   ....+.++...   .+
T Consensus       245 ~~v~p~kG~~lvl~~~~~~~~~~~~~~~~---~-dg-r~v~~iP~-~g~~~iGtT~~~~~~~~~~~~~t~~~i~~ll~~~  318 (561)
T 3da1_A          245 KYLKLSKGVHLVVDQSRFPLRQAVYFDTE---S-DG-RMIFAIPR-EGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAA  318 (561)
T ss_dssp             SEEEEEEEEEEEEEGGGSCCSSEEEECCS---S-SC-CCEEEEEE-TTEEEECCCCEEECSCTTCCCCCHHHHHHHHHHH
T ss_pred             ceEEeccEEEEEECCccCCCceEEEeccC---C-CC-cEEEEEec-CCCEEEcCCCCccCCCcCCCCCCHHHHHHHHHHH
Confidence            12233345554454332 22233333221   1 22 24667898 567777765421  1   12223333333   33


Q ss_pred             HHHHHHcCCccceeeeeeeeeecccCCch---hhhhccCcccccccccccccCCCCChHHHHHHHHHHH
Q psy10545        572 KDYAIKNRWKLKNIEREEIGSIPIALKNE---KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIA  637 (1428)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~---~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~  637 (1428)
                      .+++....+...+++..-.|+=|+.....   .....+..+..+ ..|.++=..|. +-.....|+.++
T Consensus       319 ~~~~P~l~~~~~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~~-~~gli~i~Ggk-~Tt~r~mAe~~~  385 (561)
T 3da1_A          319 NYMFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFFS-DSGLISIAGGK-LTGYRKMAERTV  385 (561)
T ss_dssp             HHHCTTCCCCTTTEEEEEEEEEEEEEC-----------CCEEEC-SSCCEEECCCC-STTHHHHHHHHH
T ss_pred             HHhCCCCCCChhhEEEEeEEeccccCCCCCCccccccceEEEec-CCCeEEEeCCh-hhhHHHHHHHHH
Confidence            33322122223455555556667743211   111123344443 35555554444 543334444333

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.60  E-value=1.8e-05  Score=97.58  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=37.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      |.++||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            3468999999999999999999999999999999999999653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.58  E-value=0.00015  Score=85.55  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=48.0

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCC--cEEEeeEEEecCCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNK--KIINANCIIDGRGLKNS  497 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g--~~~~a~lvI~AdG~~S~  497 (1428)
                      ...++...+.+.|.+.+++.| .++.+++|+++..+  .   |++.+|  .+++|+.||.|+|..|.
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~  210 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAP  210 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHH
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchH
Confidence            345788899999999998888 68889999998642  2   566676  48999999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.58  E-value=0.00022  Score=86.26  Aligned_cols=51  Identities=16%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|+++++++.|+++.  ++   .|++++|+++.+|.||++++.
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~~---~v~~~~g~~~~~D~vl~a~G~  238 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAIN--GN---EITFKSGKVEHYDMIIEGVGT  238 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEE--TT---EEEETTSCEEECSEEEECCCE
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEec--CC---eeeecCCeEEeeeeEEEEece
Confidence            4567788888999999999999999884  33   377899999999999999964

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.56  E-value=5.2e-05  Score=93.49  Aligned_cols=56  Identities=7%  Similarity=-0.002  Sum_probs=46.4

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .....+.+.|.+.+.+.| .++.+++|+++..+  .   |++.+|.+++|++||.|+|..|.
T Consensus       217 ~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          217 FKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             chHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            356778888999988877 78899999998632  1   67888889999999999999873

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.55  E-value=1.9e-05  Score=89.81  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhc-CCeEEEEcCCCCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKL  346 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~-G~~V~lie~~~~~  346 (1428)
                      +|++|+|+|++|+.+|+.|++. |++|+|||+.+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            4789999999999999999997 9999999998755

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.54  E-value=4.6e-05  Score=90.04  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      .++||+|||||++|+++|++|+++|++|+|+|++...+|
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            358999999999999999999999999999999875443

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.51  E-value=0.00017  Score=89.60  Aligned_cols=142  Identities=13%  Similarity=0.062  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCccc---CcchhHHHHHHHHHhcCCCceEEEe
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNT---NQGLWNSIIAWYLKQYNPKLNVLLL  387 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~---g~Gl~~~~~~~~~~~~~~~~rv~~l  387 (1428)
                      ++|+||+|+|++|+.+|++||+.|.+|+|||+.+..        +  +...|   -+|+....+...+.... .      
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~--------i--G~~~Cnps~ggia~~~lv~ei~alg-g------   90 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDT--------L--GQMSCNPAIGGIGKGHLVKEVDALG-G------   90 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--------T--TCCSSSSEEESTTHHHHHHHHHHTT-C------
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccc--------c--ccccccccccchhhHHHHHHHHHhc-c------
Confidence            468999999999999999999999999999987421        0  11112   23443322221111000 0      


Q ss_pred             ecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcC----CCcccccccceeeechHHHHHHHHHhcc-CCeEE
Q psy10545        388 ELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFP----KFNRKIFSGYYSICSKHLNSYLIRALGI-NNFLF  462 (1428)
Q Consensus       388 ~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~~~~  462 (1428)
                               .+..|.           +        ...+.+.    ........+...+++..+.+.|.+.+.+ .|+.+
T Consensus        91 ---------~~~~~~-----------d--------~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I  142 (651)
T 3ces_A           91 ---------LMAKAI-----------D--------QAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI  142 (651)
T ss_dssp             ---------SHHHHH-----------H--------HHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE
T ss_pred             ---------HHHHHh-----------h--------hcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence                     000000           0        0011110    0001112234568889999999999987 57433


Q ss_pred             ecceEEEEe--CCe---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        463 NNKTVEIIT--PTS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       463 ~~~~v~~i~--~~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .+++|+.+.  .+.   |.+.+|.+++|+.||.|+|..|.
T Consensus       143 ~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          143 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            567898885  232   66778888999999999999843

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.50  E-value=2.6e-05  Score=89.55  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             HHHHHHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCC
Q psy10545        310 FDKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKL  346 (1428)
Q Consensus       310 ~~~~~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~  346 (1428)
                      .++|++|+|+|++|+.+|+.|+++  |++|+|||+.+.+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            346899999999999999999997  9999999988755

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.49  E-value=0.00033  Score=87.13  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             HcCcEEEeCceeeEEEEeC-CeEEEEEecC---Cc--EEEcC-EEEEcCCHHHHHHHhc
Q psy10545        943 NLGGNLILNSQVISIYVNN-NKVNKVHLKN---GQ--IFDAD-IIVSNADIINTYRNLL  994 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~---G~--~i~ad-~VV~A~~~~~~~~~Ll  994 (1428)
                      +.|++|++++.|++|..++ +++++|++.+   |+  ++.|+ .||+|++...+.+.|+
T Consensus       221 ~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~  279 (546)
T 2jbv_A          221 QENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLM  279 (546)
T ss_dssp             CTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             CCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhh
Confidence            5689999999999999988 8889998744   53  68898 9999998876655343

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.48  E-value=3.6e-05  Score=94.24  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=38.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            58999999999999999999999999999999999998653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.45  E-value=0.00026  Score=86.96  Aligned_cols=56  Identities=11%  Similarity=0.079  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADI  986 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~  986 (1428)
                      ...+.+.+.+.|++.|++|++|++|++|+. ++....+...||    +++.||.||+|++.
T Consensus       271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~-~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEE-KQLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEECS-SEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhcceeeecCceEEEEeC-CceEEEEEecCcccceeeeccCEEEEccCC
Confidence            367888889999999999999999999852 222344555676    36999999999873

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.44  E-value=7.3e-05  Score=84.08  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=33.3

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      .+||+|||||||||++|+.|++.+  ++|+|+|+++.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCC
Confidence            589999999999999999999975  8999999987663

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.43  E-value=6.4e-05  Score=93.16  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            46899999999999999999999999999999964

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.42  E-value=6.3e-05  Score=87.05  Aligned_cols=40  Identities=30%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ++||+|||||++|++||+.|++.|++|+|+|+ ..+||.+.
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            58999999999999999999999999999999 46777654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.41  E-value=6.4e-05  Score=93.32  Aligned_cols=57  Identities=18%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-eE--EEEEecCCc-EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN-KV--NKVHLKNGQ-IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~-~v--~~V~~~~G~-~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..+++ ++  +.|++.+|+ ++.||.||+|++..
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            56788899999999999999999999987544 33  467788887 89999999999743

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.41  E-value=6.3e-05  Score=91.28  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=39.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..+||+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            468999999999999999999999999999999999999753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.40  E-value=0.00023  Score=88.04  Aligned_cols=142  Identities=14%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCC-CCcccccccccCC-CCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD-KLSWINLKFQFGV-GYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE  388 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~-~~~~~~~~~~~~~-~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~  388 (1428)
                      ++|+||+|+|++|+.+|++||+.|++|+|||+.+ ..         |. +-.++-+|+....+...+.... .       
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~i---------G~~~Cnps~GGia~g~lv~eldalg-g-------   89 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTI---------GQMSCNPAIGGIAKGIVVREIDALG-G-------   89 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT---------TCCCSCSEEECTTHHHHHHHHHHHT-C-------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEeccccc---------CCcCccccccccchHHHHHHHHHhh-h-------
Confidence            4689999999999999999999999999999874 22         10 0111223443322221111000 0       


Q ss_pred             cCCCCCCceeeeccCCcCcccccccccccccccCccEEEcC----CCcccccccceeeechHHHHHHHHHhcc-CCeEEe
Q psy10545        389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFP----KFNRKIFSGYYSICSKHLNSYLIRALGI-NNFLFN  463 (1428)
Q Consensus       389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~~~~~  463 (1428)
                              .|..+.           +        ...+.+.    ........+...+++..+.+.|.+.+.+ .|+.+.
T Consensus        90 --------~~~~~~-----------d--------~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~  142 (637)
T 2zxi_A           90 --------EMGKAI-----------D--------QTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK  142 (637)
T ss_dssp             --------SHHHHH-----------H--------HHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE
T ss_pred             --------HHHHHh-----------h--------hcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence                    000000           0        0001110    0001112234567889999999999987 474335


Q ss_pred             cceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCC
Q psy10545        464 NKTVEIITP--TS---IRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       464 ~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      ++.|+++..  +.   |.+.+|.+++|+.||.|+|..+
T Consensus       143 ~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          143 QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            678988752  22   6777888999999999999884

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.39  E-value=5.9e-05  Score=92.89  Aligned_cols=54  Identities=15%  Similarity=0.100  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++. ++|+++++|++|..+++++ .|++.  +|  +++.+|.||+|++.
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAV-EVIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSE-EEEEECTTCCEEEEEESEEEECSCC
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEE-EEEEEeCCCceEEEECCEEEEeeCC
Confidence            56778888888887 9999999999999877764 35554  67  67999999999965

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.38  E-value=6.4e-05  Score=92.32  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=37.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46899999999999999999999999999999998777654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.38  E-value=5.9e-05  Score=92.44  Aligned_cols=41  Identities=27%  Similarity=0.430  Sum_probs=38.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            58999999999999999999999999999999989998653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.36  E-value=7e-05  Score=87.17  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEcc----CCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQ----RDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa----~~~~GGr~  750 (1428)
                      +.++||+|||||++|+++|+.|++.|++|+|+|+    ...+||.+
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~   51 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQL   51 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCcee
Confidence            4568999999999999999999999999999998    45566653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.36  E-value=7.3e-05  Score=91.70  Aligned_cols=41  Identities=29%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   45 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccc
Confidence            46899999999999999999999999999999998898865

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.34  E-value=6.6e-05  Score=92.15  Aligned_cols=41  Identities=29%  Similarity=0.498  Sum_probs=38.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC   45 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcc
Confidence            46899999999999999999999999999999998898865

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.31  E-value=6.4e-05  Score=88.29  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             ceeeecCCCcchHHHHHHHHhCC------CeEEEEccCCCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAG------ISTIILEQRDKPGG  748 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G------~~V~VlEa~~~~GG  748 (1428)
                      +||+|||||++||++|++|+++|      ++|+|+|++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            48999999999999999999998      99999999875444

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.30  E-value=7.4e-05  Score=91.81  Aligned_cols=41  Identities=29%  Similarity=0.427  Sum_probs=38.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   44 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC   44 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence            46899999999999999999999999999999988888855

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.30  E-value=7.9e-05  Score=91.17  Aligned_cols=40  Identities=38%  Similarity=0.452  Sum_probs=36.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            4689999999999999999999999999999998 677654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.29  E-value=7.5e-05  Score=91.75  Aligned_cols=41  Identities=29%  Similarity=0.416  Sum_probs=37.1

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +.++||+|||||++||+||..|++.|++|+|+|++ .+||.|
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   58 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcc
Confidence            45689999999999999999999999999999976 678765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.29  E-value=0.0001  Score=90.73  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEcc--------CCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQ--------RDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa--------~~~~GGr~  750 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+        ...+||.|
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc   53 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTC   53 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCee
Confidence            469999999999999999999999999999998        55678855

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.28  E-value=0.00033  Score=82.47  Aligned_cols=110  Identities=24%  Similarity=0.271  Sum_probs=78.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +|++|+|+|++|+.+|+.|+++|++|+|||+.+..                | |.+..        ..|.          
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~----------------g-g~~~~--------~~~~----------   59 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQL----------------G-GQLAA--------LYPE----------   59 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS----------------C-HHHHH--------TCTT----------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC----------------C-Ccccc--------cCCC----------
Confidence            47899999999999999999999999999987654                1 21110        0111          


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                                            ..  .+.       .+        ....+.+..+.+.|.+.+.+.+ .++.+++|+.+
T Consensus        60 ----------------------~~--~~~-------~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i  100 (360)
T 3ab1_A           60 ----------------------KH--IYD-------VA--------GFPEVPAIDLVESLWAQAERYNPDVVLNETVTKY  100 (360)
T ss_dssp             ----------------------SE--ECC-------ST--------TCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEE
T ss_pred             ----------------------cc--ccc-------CC--------CCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEE
Confidence                                  00  000       00        0112567788888888887777 57778899988


Q ss_pred             eCC-----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT-----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~-----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ...     .|++.+|.+++++.||.|+|.+
T Consensus       101 ~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A          101 TKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             EECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             EECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            642     2677788899999999999987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.28  E-value=0.00011  Score=90.34  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-----EEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-----IFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-----~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|++++.|++|..++++...|++.+++     ++.+|.||++++.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence            4567777888888888898888888888754432456665543     6888888888864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.28  E-value=0.0001  Score=94.60  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=39.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEee
Confidence            568999999999999999999999999999999999999765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.27  E-value=7.3e-05  Score=86.80  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=36.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      .++|++|||+|||||++|++|++.+.+++|+|+|+++..+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            4689999999999999999998876789999999988773

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.27  E-value=0.00039  Score=86.35  Aligned_cols=143  Identities=14%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCC-CCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGV-GYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~-~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      ++|+||+|+|++|+.+|++||+.|.+|+|||+.+..        .|. +--+.-+|+....+...+.... .        
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~--------iG~~~c~ps~gGia~~~lv~el~al~-g--------   83 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSA--------VARMSCNPAIGGVAKGQITREIDALG-G--------   83 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--------TTCCSSCSEEECHHHHHHHHHHHHHT-C--------
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccc--------cCCCccccchhhhhHHHHHHHHHhcc-c--------
Confidence            358999999999999999999999999999987421        010 0011123332222221110000 0        


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcC----CCcccccccceeeechHHHHHHHHHhcc-CCeEEec
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFP----KFNRKIFSGYYSICSKHLNSYLIRALGI-NNFLFNN  464 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~~~~~~  464 (1428)
                             ....|                   +....+.|.    ........+...+++..+.+.|.+.+.+ .|+.+..
T Consensus        84 -------~~~~~-------------------~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~  137 (641)
T 3cp8_A           84 -------EMGKA-------------------IDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ  137 (641)
T ss_dssp             -------SHHHH-------------------HHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             -------HHHHH-------------------HHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe
Confidence                   00000                   000011110    0001112234578999999999999977 4743345


Q ss_pred             ceEEEEe--CCe---EEEcCCcEEEeeEEEecCCCCC
Q psy10545        465 KTVEIIT--PTS---IRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       465 ~~v~~i~--~~~---v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      ..|+.+.  .+.   |++.+|.+++|+.||.|+|..+
T Consensus       138 ~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          138 DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            6888865  333   6677888999999999999884

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.24  E-value=0.0002  Score=88.90  Aligned_cols=48  Identities=17%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      .++||+|||||+|||++|++|++.. +.+|+|+|+++..+.+.++++..
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~-G~~V~VlE~~~~~GG~~~T~~~~   56 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQID-GPSWMIVDSNETPGGLASTDVTP   56 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHC-CSCEEEEESSSSCCGGGCEEECT
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhC-CCCEEEEECCCCCcCCeeeEEec
Confidence            4699999999999999999998752 57999999999886566666653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.22  E-value=0.00011  Score=89.95  Aligned_cols=55  Identities=11%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-C--Cc--EEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-N--GQ--IFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~--G~--~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++ +.|++. +  |+  ++.+|.||+|++.
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKKKDG-LHVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTE-EEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCE-EEEEEeecCCCceeEEEcCEEEECCCc
Confidence            556777888888889999999999999877765 456665 6  76  7899999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.21  E-value=0.00011  Score=90.21  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=37.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   45 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCce
Confidence            5899999999999999999999999999999988888754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.21  E-value=0.00024  Score=83.25  Aligned_cols=122  Identities=18%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      ++++|+|+|++|+.+|..|++.|++|+|+|+.+.+                | |.+..        ..|..+.       
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~----------------g-g~~~~--------~~~~~~~-------   51 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASP----------------G-GAWQH--------AWHSLHL-------   51 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSS----------------S-GGGGG--------SCTTCBC-------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC----------------C-CcccC--------CCCCcEe-------
Confidence            46789999999999999999999999999988755                1 11110        0111000       


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                               .            ...........  ..+      ........+..+.+.|.+.+.+.+ .++.+++|+++
T Consensus        52 ---------~------------~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i  102 (357)
T 4a9w_A           52 ---------F------------SPAGWSSIPGW--PMP------ASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRV  102 (357)
T ss_dssp             ---------S------------SCGGGSCCSSS--CCC------CCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEE
T ss_pred             ---------c------------CchhhhhCCCC--CCC------CCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence                     0            00000000000  000      111223467888999998888877 68888999988


Q ss_pred             eCC--e---EEEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT--S---IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~--~---v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+  .   |++.+| +++++.||.|+|..
T Consensus       103 ~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A          103 SHFGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             EEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             EECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            643  3   555555 89999999999986

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.21  E-value=0.00039  Score=76.22  Aligned_cols=54  Identities=11%  Similarity=-0.047  Sum_probs=43.1

Q ss_pred             echHHHHHHHHHhccC-Ce-EEecceEEEEeCC-----eEEEcCCcEEEeeEEEecCCCCCC
Q psy10545        443 CSKHLNSYLIRALGIN-NF-LFNNKTVEIITPT-----SIRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~-~~-~~~~~~v~~i~~~-----~v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++..+.+.|.+.+++. |+ ++ +++|+++..+     .|++.+|.+++|+.||.|+|..|.
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            7888999999999876 74 45 6789888632     266778888999999999999854

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.20  E-value=0.00013  Score=84.95  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +.++||+|||||++|++||..|++.|++|+|+|+. .+||.+
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   52 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL   52 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence            34689999999999999999999999999999975 667643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.19  E-value=0.00013  Score=89.22  Aligned_cols=55  Identities=13%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..+++. +.|.++ +.++.+|.||+|++..
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~-~~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGE-FVLTTT-HGELRADKLLVATGRT  270 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTE-EEEEET-TEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEC-CcEEEcCEEEECCCCC
Confidence            567888888899999999999999999877664 567776 4589999999999764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.19  E-value=0.00013  Score=88.19  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999976

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.17  E-value=0.0003  Score=73.64  Aligned_cols=102  Identities=14%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+|+.|+..|..|++.|.+|+|+|+.+......                                          
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~------------------------------------------   40 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV------------------------------------------   40 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc------------------------------------------
Confidence            46799999999999999999999999999876330000                                          


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                           +     .+        .     .++.    ++          ..+....+.+.+.+.+++.| .++.+ +|++++
T Consensus        41 -----~-----~~--------~-----~~~~----~~----------~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~   82 (180)
T 2ywl_A           41 -----S-----RV--------P-----NYPG----LL----------DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVR   82 (180)
T ss_dssp             -----S-----CC--------C-----CSTT----CT----------TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEE
T ss_pred             -----h-----hh--------h-----ccCC----Cc----------CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEE
Confidence                 0     00        0     0000    00          12455678888888888888 57777 888886


Q ss_pred             CC--e--EEEcCCcEEEeeEEEecCCCC
Q psy10545        472 PT--S--IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       472 ~~--~--v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+  .  |++.+| ++.++.||.|+|..
T Consensus        83 ~~~~~~~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           83 DMGGVFEVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             ECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred             EcCCEEEEEECCC-EEEECEEEECCCCC
Confidence            43  2  666777 89999999999988

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.17  E-value=0.0026  Score=77.17  Aligned_cols=185  Identities=10%  Similarity=0.035  Sum_probs=100.2

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeC---------------C-e----EEEcCCcEE--EeeEEEecCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITP---------------T-S----IRINNKKII--NANCIIDGRGLKN  496 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~---------------~-~----v~l~~g~~~--~a~lvI~AdG~~S  496 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|+++..               + +    |.+.+| ++  +|+.||.|.|..|
T Consensus       176 ~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             eEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            45677899999999998888 6788899998864               2 2    455566 68  9999999999875


Q ss_pred             CCC------CcceEEEEEEEEEecCCcC-CC-------------CceEEecccCCCCCcceEEEEeeCCC-CceEEEeEE
Q psy10545        497 SQF------DGIYQIFLGQQWNLSSPHG-LD-------------IPIIMDATVNQKNDEYHFIYTLPLTP-NSLMIEDTR  555 (1428)
Q Consensus       497 ~~~------~~~~q~~~g~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~g~~f~~~lPl~~-~~~~v~~~~  555 (1428)
                      ..+      .......-|.-+.++.+.. ..             .+.+.+.         ..+|+.|..+ +.+.++.+.
T Consensus       255 ~~l~~~~g~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------~~~y~~p~~~~g~~~iG~~~  325 (448)
T 3axb_A          255 NRLLNPLGIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILP---------KRVLVRPAPREGSFWVQLSD  325 (448)
T ss_dssp             HHHHGGGTCCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEET---------TTEEEEEETTTTEEEEEECC
T ss_pred             HHHHHHcCCCCcccccceEEEEeCCcccccccccccccccccCCCceEEcC---------CceEEeecCCCCeEEEecCC
Confidence            411      1111222222222322211 00             1122111         1257788877 677777654


Q ss_pred             ec----cC-C--CCCHHHHHHHHHHHHHH-cC-Cccceeeeeeeeeecc-cCCchhhhhccCcccccccc-ccccc--CC
Q psy10545        556 YT----KK-P--FLKIDMLKKSIKDYAIK-NR-WKLKNIEREEIGSIPI-ALKNEKIIKFKKTICVGLRA-NLLHA--TT  622 (1428)
Q Consensus       556 ~~----~~-~--~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~Pl-~~~~~~~~~~~rv~lvGdAA-~~vhP--~~  622 (1428)
                      ..    .. .  ..+.+.+.+.+.+.+.+ ++ +...++...-.+..|+ ..        ++.-+||... +.+.-  ..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~--------d~~p~ig~~~~~l~~a~G~~  397 (448)
T 3axb_A          326 NLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISFD--------ANPVVFEPWESGIVVAAGTS  397 (448)
T ss_dssp             CTTSCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEETT--------SSCEEECGGGCSEEEEECCT
T ss_pred             cccCCcccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEeccccC--------CCCcEeeecCCCEEEEECCC
Confidence            31    11 1  11222214444444443 22 1112333333456666 32        2333455432 22222  24


Q ss_pred             CCChHHHHHHHHHHHhhccc
Q psy10545        623 GYSLPIAIQLAENIAKYSIT  642 (1428)
Q Consensus       623 G~G~~~a~~la~~l~~~~~~  642 (1428)
                      |.||..+..+++.+++.+..
T Consensus       398 g~G~~~ap~~g~~la~~i~~  417 (448)
T 3axb_A          398 GSGIMKSDSIGRVAAAVALG  417 (448)
T ss_dssp             TCCGGGHHHHHHHHHHHHTT
T ss_pred             chhHhHhHHHHHHHHHHHcC
Confidence            66898888888888887664

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.17  E-value=0.00071  Score=81.01  Aligned_cols=57  Identities=19%  Similarity=0.093  Sum_probs=44.4

Q ss_pred             ceeeechHHHHHHHHHhccCC-eEEecceEE---------EEeCCe----EEEcCCcEEEeeEEEecCCCCC
Q psy10545        439 YYSICSKHLNSYLIRALGINN-FLFNNKTVE---------IITPTS----IRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~---------~i~~~~----v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      ...++...+.+.|.+.+.+.| .++.+++|+         ++..++    |++.+| +++|+.||.|+|..|
T Consensus       166 ~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          166 ALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             CEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             CEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            356788999999999998888 677888998         776432    444444 899999999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.17  E-value=0.0002  Score=92.30  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeee
Confidence            468999999999999999999999999999999999999765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.16  E-value=0.0002  Score=82.30  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=35.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      |+||+|||||++|+.||+.|++.|++|+|+|++...+.-
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp   39 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP   39 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence            479999999999999999999999999999998765543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.16  E-value=0.00034  Score=87.17  Aligned_cols=130  Identities=19%  Similarity=0.277  Sum_probs=79.8

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|++|+|+|+.|+.+|..|++.|++|+|+|+.+..                 ||.+..       ...|..+.   +..
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~-----------------GG~w~~-------~~~pg~~~---d~~   68 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV-----------------GGVWYW-------NRYPGARC---DIE   68 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS-----------------CTHHHH-------CCCTTCBC---SSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCC-----------------CCcccc-------cCCCceee---ccc
Confidence            457899999999999999999999999999998755                 233211       11222110   000


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC---eEEecceE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN---FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~~v  467 (1428)
                      +  .....++ .    +      .....+.|                ......+.++.+.|...+.+.+   .++.+++|
T Consensus        69 ~--~~~~~~f-~----~------~~~~~~~~----------------~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V  119 (542)
T 1w4x_A           69 S--IEYCYSF-S----E------EVLQEWNW----------------TERYASQPEILRYINFVADKFDLRSGITFHTTV  119 (542)
T ss_dssp             T--TTSSCCS-C----H------HHHHHCCC----------------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCE
T ss_pred             c--ccccccc-C----h------hhhhccCc----------------ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEE
Confidence            0  0000000 0    0      00000011                1123456777777777665543   47788999


Q ss_pred             EEEeC--C----eEEEcCCcEEEeeEEEecCCCCC
Q psy10545        468 EIITP--T----SIRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       468 ~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      ++++.  +    .|++.+|.+++|+.||.|+|..|
T Consensus       120 ~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A          120 TAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  154 (542)
T ss_dssp             EEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             EEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCC
Confidence            88863  2    27777888999999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.15  E-value=0.00012  Score=89.41  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=37.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            468999999999999999999999999999999 78888764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.15  E-value=0.00036  Score=83.21  Aligned_cols=54  Identities=9%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEeCC-----e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIITPT-----S---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~-----~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ++..+.+.|.+.+.+.| .++.+++|+++..+     .   |++.+| +++|+.||.|+|..|.
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            67888889999998888 68889999888632     2   555555 7999999999999964

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.13  E-value=0.0002  Score=87.39  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             ceeeecCCCcchHHHHHHHHh---CCCe---EEEEccCCCCCCcce
Q psy10545        712 KIRIFSGAGIGGIALAIRLQT---AGIS---TIILEQRDKPGGRAY  751 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~---~G~~---V~VlEa~~~~GGr~~  751 (1428)
                      +||+|||||++||+||..|++   .|++   |+|+|+++.+||.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~   48 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN   48 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee
Confidence            699999999999999999999   9999   999999999998654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.12  E-value=0.00019  Score=88.38  Aligned_cols=41  Identities=17%  Similarity=0.045  Sum_probs=32.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+||||||+|++||++|+.|.+.|...+++|+.+..|+.-
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~   78 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPK   78 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcc
Confidence            45899999999999999999999998888888887776643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.11  E-value=0.00058  Score=79.41  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      ++++|+|+|++|+.+|..|++.|++|+|+|+.+..                 +|.+..        ..|.          
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~-----------------gg~~~~--------~~~~----------   50 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEP-----------------GGQLTA--------LYPE----------   50 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS-----------------CHHHHH--------TCTT----------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC-----------------CCeeec--------cCCC----------
Confidence            46789999999999999999999999999988654                 121110        0111          


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                                            ..  .+.       .+        ....+....+.+.|.+.+.+.+ .++.+++|+.+
T Consensus        51 ----------------------~~--~~~-------~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i   91 (335)
T 2zbw_A           51 ----------------------KY--IYD-------VA--------GFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETL   91 (335)
T ss_dssp             ----------------------SE--ECC-------ST--------TCSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEE
T ss_pred             ----------------------ce--eec-------cC--------CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence                                  00  000       00        0012456778888888887766 56778899888


Q ss_pred             eCC--e--EEEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT--S--IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~--~--v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+  .  |++.+|.+++++.||.|+|.+
T Consensus        92 ~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           92 EREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             EEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             EECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            643  2  666778889999999999987

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.10  E-value=0.00024  Score=89.57  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=37.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+||+|||||++|++||+.|++.|++|+|+|+.+..||.+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            35899999999999999999999999999999999988744

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.09  E-value=0.00017  Score=88.00  Aligned_cols=39  Identities=33%  Similarity=0.505  Sum_probs=36.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            589999999999999999999999999999998 778754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.07  E-value=0.00035  Score=80.28  Aligned_cols=54  Identities=11%  Similarity=-0.017  Sum_probs=41.8

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeC--C--eEEEcCCcEEEeeEEEecCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITP--T--SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~--~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+++..+.+.+.+.+.+.+ .++. ++|+++..  +  .|++.+|.+++++.||.|+|..
T Consensus        55 ~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           55 VVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             CBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCC
Confidence            4677888888888887777 4555 78888763  3  3667788899999999999965

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.06  E-value=0.00025  Score=81.58  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      |+..||++||||||||+++|.+|++.+  ++|+|+|+..
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~~   37 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGFM   37 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Confidence            445799999999999999999999964  7999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.02  E-value=0.00042  Score=84.29  Aligned_cols=46  Identities=20%  Similarity=0.260  Sum_probs=39.5

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      |...+|+||||+|++||++|++|++.+  ++|+++|+++..+.++.++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~   53 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAASV   53 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCEE
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCccccce
Confidence            445799999999999999999999965  7999999999886566664

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.02  E-value=0.00023  Score=86.49  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=38.8

Q ss_pred             cccceeeecCCCcchHHHHHHHHh-C------CCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQT-A------GISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~-~------G~~V~VlEa~~~~GGr~~  751 (1428)
                      |.++||+|||||++|++||..|++ .      |++|+|+|+.+.+||.+.
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            346899999999999999999999 7      999999999999998764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.01  E-value=0.00028  Score=82.04  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=75.7

Q ss_pred             ChhhHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHH
Q psy10545        295 PDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWY  374 (1428)
Q Consensus       295 ~~~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~  374 (1428)
                      +.......+......+..+++|+|+|++|+.+|..|+++|++|+|+|+.+...+             .-||.+..     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~-------------~~gg~~~~-----   67 (338)
T 3itj_A            6 HHHHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGI-------------AAGGQLTT-----   67 (338)
T ss_dssp             ---------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB-------------CTTCGGGG-----
T ss_pred             cccccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCC-------------CcCccccc-----
Confidence            333334444444444556899999999999999999999999999998652100             00111000     


Q ss_pred             HHhcCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHH
Q psy10545        375 LKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRA  454 (1428)
Q Consensus       375 ~~~~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~  454 (1428)
                                                .            .         ....++       .....+.+..+...+.+.
T Consensus        68 --------------------------~------------~---------~~~~~~-------~~~~~~~~~~~~~~~~~~   93 (338)
T 3itj_A           68 --------------------------T------------T---------EIENFP-------GFPDGLTGSELMDRMREQ   93 (338)
T ss_dssp             --------------------------S------------S---------EECCST-------TCTTCEEHHHHHHHHHHH
T ss_pred             --------------------------c------------h---------hhcccC-------CCcccCCHHHHHHHHHHH
Confidence                                      0            0         000000       111236678888889998


Q ss_pred             hccCC-eEEecceEEEEeCCe--EEE-----cCCcEEEeeEEEecCCCC
Q psy10545        455 LGINN-FLFNNKTVEIITPTS--IRI-----NNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       455 ~~~~~-~~~~~~~v~~i~~~~--v~l-----~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+.+ .++.++ |+++..+.  +++     .++.++.++.||.|+|..
T Consensus        94 ~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~  141 (338)
T 3itj_A           94 STKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGAS  141 (338)
T ss_dssp             HHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEE
T ss_pred             HHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCC
Confidence            88878 566666 88887543  433     366789999999999965

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.01  E-value=0.003  Score=77.00  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            47999999999999999999999999999997654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.01  E-value=0.00022  Score=87.96  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcE-EEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI-FDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~-i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..++++...|++.+|++ +.+|.||+|++.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~  273 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR  273 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence            56788889999999999999999999987653335678889987 999999999974

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.97  E-value=0.00039  Score=89.00  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||...
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999998753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.97  E-value=0.00033  Score=85.16  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++. +++++++.|++|..++ ++..| ..+|+++.+|.||+|++..
T Consensus       190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v-~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKV-VTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEE-EETTEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEE-EeCCCEEECCEEEEeeCCc
Confidence            56777888888888 9999999999997554 43444 4467789999999999753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.95  E-value=0.0013  Score=81.58  Aligned_cols=129  Identities=17%  Similarity=0.215  Sum_probs=83.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHh-hcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQ-TAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL  389 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La-~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~  389 (1428)
                      +.+++|+|+|+.|+.+|..|+ +.|++|+|||+.+..                 ||.+..       ...|+.+.-.-+.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~-----------------GGtw~~-------~~ypg~~~d~~s~   63 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGP-----------------GGTWYW-------NRYPGALSDTESH   63 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSS-----------------CTHHHH-------CCCTTCEEEEEGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCC-----------------CCcccc-------cCCCCceecCCcc
Confidence            357899999999999999999 999999999998755                 222211       1223322110000


Q ss_pred             CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccceeeechHHHHHHHHHhccCC---eEEecc
Q psy10545        390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYYSICSKHLNSYLIRALGINN---FLFNNK  465 (1428)
Q Consensus       390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~  465 (1428)
                                          .        .     ...+... ............+.++.+.|.+.+.+.+   .++.++
T Consensus        64 --------------------~--------~-----~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~  110 (540)
T 3gwf_A           64 --------------------L--------Y-----RFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGT  110 (540)
T ss_dssp             --------------------G--------S-----SCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESC
T ss_pred             --------------------e--------e-----eeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEecc
Confidence                                0        0     0000000 0000111234678888888888887766   477889


Q ss_pred             eEEEEeC--C----eEEEcCCcEEEeeEEEecCCCCC
Q psy10545        466 TVEIITP--T----SIRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       466 ~v~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      +|+++..  +    .|++.+|.+++++.||.|+|..|
T Consensus       111 ~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A          111 EVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             EEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence            9988863  2    37888888999999999999863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.93  E-value=0.00034  Score=81.26  Aligned_cols=52  Identities=17%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+..+.+.|.+.+.+.+ .++.+. |+.+...    .|++ +|.+++++.||.|+|..
T Consensus        67 ~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           67 ILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence            667788888888887777 566554 8888643    2555 77889999999999976

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.00062  Score=81.25  Aligned_cols=48  Identities=21%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      |..++|++|||||+|||++|++|.+. ++.+|+|+|+++..+.+++++-
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~GG~~~~~~   51 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHIGGNAYSEA   51 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSSSGGGCEEE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCeeeecc
Confidence            55579999999999999999999987 2479999999988865666654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.89  E-value=0.00054  Score=78.82  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .+||++||||||||+++|.+|++.+  ++|+|||+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRAN--LKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Confidence            4799999999999999999999964  7999999753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.88  E-value=0.00046  Score=85.84  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+||||+|+||+.+|.||++. ++.+|+|||.++..
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~~   53 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEEP   53 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBCC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCCC
Confidence            4589999999999999999999984 57899999998654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.86  E-value=0.00042  Score=92.05  Aligned_cols=42  Identities=26%  Similarity=0.462  Sum_probs=39.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++||+||..|++.|++|+|+|+++.+||++.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999999999886

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.85  E-value=0.0034  Score=76.17  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=37.8

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      +.+.+++.|++|+++++|++|..+ +++..|.+ +|+++.+|.||+|++..
T Consensus       197 l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~  245 (447)
T 1nhp_A          197 LTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVR  245 (447)
T ss_dssp             HHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEE
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCC
Confidence            344566779999999999999865 55445666 56689999999999753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.85  E-value=0.00097  Score=80.98  Aligned_cols=56  Identities=9%  Similarity=-0.108  Sum_probs=43.6

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcC---Cc---EEEeeEEEecCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT----SIRINN---KK---IINANCIIDGRGLKN  496 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~---g~---~~~a~lvI~AdG~~S  496 (1428)
                      .+.+..+.+.|.+.+.+.+ .++.+++|++++..    .|++.+   |.   ++.+|.||.|+|..|
T Consensus       111 ~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          111 FPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             SCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            3578889999988887655 57778999988642    266654   66   799999999999874

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.85  E-value=0.0038  Score=76.49  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  217 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ  217 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            4799999999999999999999999999998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.81  E-value=0.00052  Score=91.81  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~  750 (1428)
                      ..+||+|||||++||+||..|++.|+ +|+|+|+.+.+||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            36799999999999999999999999 799999999999974

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.81  E-value=0.0005  Score=83.55  Aligned_cols=42  Identities=21%  Similarity=0.109  Sum_probs=38.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~  751 (1428)
                      .++||+|||||++|++||..|++.|  ++|+|+|+.+.+||+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            4579999999999999999999998  99999999999998763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.80  E-value=0.0011  Score=76.66  Aligned_cols=107  Identities=19%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      .++++|+|+|++|+.+|..|++.|++|+|+|+.. +                |+-+..                      
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----------------gg~~~~----------------------   48 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-P----------------GGQIAW----------------------   48 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-T----------------TGGGGG----------------------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-C----------------Cccccc----------------------
Confidence            3578999999999999999999999999999872 2                111100                      


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                                .. .+             ..       ++.       ....+.+..+.+.+.+.+.+.| .++. .+|++
T Consensus        49 ----------~~-~~-------------~~-------~~~-------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   89 (325)
T 2q7v_A           49 ----------SE-EV-------------EN-------FPG-------FPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQG   89 (325)
T ss_dssp             ----------CS-CB-------------CC-------STT-------CSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEE
T ss_pred             ----------cc-cc-------------cc-------CCC-------CCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEE
Confidence                      00 00             00       000       0012456678888888887777 4444 67887


Q ss_pred             EeCC-------eEEEcCCcEEEeeEEEecCCCC
Q psy10545        470 ITPT-------SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       470 i~~~-------~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +...       .|++.+|.+++++.||.|+|..
T Consensus        90 i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~  122 (325)
T 2q7v_A           90 VQHDATSHPYPFTVRGYNGEYRAKAVILATGAD  122 (325)
T ss_dssp             EEECTTSSSCCEEEEESSCEEEEEEEEECCCEE
T ss_pred             EEeccCCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            7533       3566788899999999999965

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.79  E-value=0.001  Score=75.55  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      ++++|+|+|+.|+.+|..|++.|++|+|+|+.+..   +                           ..+.          
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~---~---------------------------~~~~----------   42 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERR---N---------------------------RFAS----------   42 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCG---G---------------------------GGCS----------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcc---c---------------------------ccch----------
Confidence            35789999999999999999999999999986532   0                           0000          


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-CeEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-NFLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~v~~i  470 (1428)
                               +.                ..       ++.        ...+....+.+.+.+.+.+. ++.+...+|+.+
T Consensus        43 ---------~~----------------~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   82 (297)
T 3fbs_A           43 ---------HS----------------HG-------FLG--------QDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA   82 (297)
T ss_dssp             ---------CC----------------CS-------STT--------CTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred             ---------hh----------------cC-------CcC--------CCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence                     00                00       000        01244577888888888776 455556689888


Q ss_pred             eCC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+    .|++.+|.+++++.||.|+|..
T Consensus        83 ~~~~~~~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           83 KGSFGEFIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             EEETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred             EEcCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            743    3778888899999999999976

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=96.76  E-value=0.00076  Score=76.91  Aligned_cols=44  Identities=27%  Similarity=0.417  Sum_probs=37.7

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW   50 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw   50 (1428)
                      .++|++|||+|+||+++|++|++.+++++|+|+|+++..+..+|
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            35799999999999999999999866789999999887743455

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.76  E-value=0.00053  Score=85.15  Aligned_cols=128  Identities=19%  Similarity=0.232  Sum_probs=80.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.++||+|+|+.|+.+|..|++.|++|+|||+.+..                 ||.+..       ...|+.+.      
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~-----------------GGtw~~-------~~yPg~~~------   58 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV-----------------GGTWYW-------NRYPGCRL------   58 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS-----------------CTHHHH-------CCCTTCBC------
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCC-----------------CCcccc-------CCCCceee------
Confidence            357899999999999999999999999999998755                 222211       12232110      


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCC-CcccccccceeeechHHHHHHHHHhccCC---eEEecce
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPK-FNRKIFSGYYSICSKHLNSYLIRALGINN---FLFNNKT  466 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~~  466 (1428)
                                   +++....              ...|.. .............+.++.+.+.+.+.+.+   .++.+++
T Consensus        59 -------------d~~~~~y--------------~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~  111 (545)
T 3uox_A           59 -------------DTESYAY--------------GYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTR  111 (545)
T ss_dssp             -------------SSCHHHH--------------CHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCC
T ss_pred             -------------cCchhhc--------------ccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCE
Confidence                         0000000              000000 00000011123566777777777776654   4777889


Q ss_pred             EEEEeC--C----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        467 VEIITP--T----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       467 v~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      |++++.  +    .|++.+|.+++++.||.|+|..
T Consensus       112 V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A          112 VTAARYVENDRLWEVTLDNEEVVTCRFLISATGPL  146 (545)
T ss_dssp             EEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            988863  2    3788888899999999999976

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.75  E-value=0.0018  Score=74.91  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      .+++|+|+|++|+.+|..|++.|++|+|+|+.+..                 +|.+..        ..|....       
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~-----------------gG~~~~--------~~~~~~~-------   55 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQL-----------------GGQLSA--------LYPEKYI-------   55 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS-----------------CHHHHH--------HCTTSEE-------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC-----------------Cceehh--------cCCCceE-------
Confidence            46889999999999999999999999999998755                 122210        0111000       


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                               |                  .       ++.        ...+....+.+.+.+.+.+.+ .++.+++|+.+
T Consensus        56 ---------~------------------~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   93 (332)
T 3lzw_A           56 ---------Y------------------D-------VAG--------FPKIRAQELINNLKEQMAKFDQTICLEQAVESV   93 (332)
T ss_dssp             ---------C------------------C-------STT--------CSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEE
T ss_pred             ---------e------------------c-------cCC--------CCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEE
Confidence                     0                  0       000        012567888899999988777 67778999988


Q ss_pred             eCC-----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT-----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~-----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ...     .|++.+|. +.++.||.|.|..
T Consensus        94 ~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           94 EKQADGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             EECTTSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             EECCCCcEEEEECCCE-EEeCEEEECCCCC
Confidence            642     36776665 9999999999986

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.74  E-value=0.0014  Score=74.99  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  344 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~  344 (1428)
                      .+|++|+|+||+|+++|+.|+++|++|+|+|+..
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999763

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.70  E-value=0.0014  Score=82.05  Aligned_cols=56  Identities=14%  Similarity=0.054  Sum_probs=43.8

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEe-CC--e---EEEc--CCc--EEEeeEEEecCCCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIIT-PT--S---IRIN--NKK--IINANCIIDGRGLKNS  497 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~-~~--~---v~l~--~g~--~~~a~lvI~AdG~~S~  497 (1428)
                      +....+.+.|.+++.+.| .++.+++|+++. .+  .   |++.  +|+  +++|+.||.|+|..|.
T Consensus       247 ~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          247 SSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            456788899999998888 688899999885 22  2   4443  665  6999999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.68  E-value=0.0062  Score=74.94  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      .+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            47999999999999999999999999999997653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.67  E-value=0.0071  Score=73.46  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCcEEEcCEEEEcCCHH
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQIFDADIIVSNADII  987 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~~i~ad~VV~A~~~~  987 (1428)
                      .+.+++.|++|+++++|++|..++++ +.|++.   +++++.+|.||++++..
T Consensus       218 ~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          218 KKRLKKKGVEVVTNALAKGAEEREDG-VTVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECSCEE
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEeCCe-EEEEEEeCCceeEEEcCEEEECcCCC
Confidence            34456679999999999999887766 445554   45689999999999753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.66  E-value=0.00068  Score=85.68  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      .++||+|||||++||+||..|++.|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999983

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.66  E-value=0.00096  Score=81.58  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccC----CCCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYN----PKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~----~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .+|++|||||++||++|++|.+.+    |+.+|+|+|+++..+.+++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~   53 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTV   53 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEe
Confidence            589999999999999999999986    668999999998775455443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.66  E-value=0.00042  Score=84.67  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=42.8

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC---------eEEEcCCc----EEEeeEEEecCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT---------SIRINNKK----IINANCIIDGRGLK  495 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~---------~v~l~~g~----~~~a~lvI~AdG~~  495 (1428)
                      ...+..+.+.|...+.+.+ .++.+++|++++..         .|++.+|.    +++++.||.|+|..
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          123 YPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence            3567888899888887766 68888999888643         35555665    89999999999964

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.65  E-value=0.0011  Score=82.13  Aligned_cols=48  Identities=25%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      ...+|++|||||+|||++|++|.+.+ ..+|+|+|++...+.++|.+..
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~~t~~~   53 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRLQTVTG   53 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTCCEEEC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCceeeeec
Confidence            34689999999999999999999864 2799999999888777877654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.59  E-value=0.0019  Score=80.91  Aligned_cols=55  Identities=18%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEeC-C-e----EEEc--CCc--EEEeeEEEecCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIITP-T-S----IRIN--NKK--IINANCIIDGRGLKNS  497 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~-~-~----v~l~--~g~--~~~a~lvI~AdG~~S~  497 (1428)
                      ....+.+.|.+++.+.| .++.+++|+++.. + +    |++.  +|+  +++|+.||.|+|..|.
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          253 VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            34688899999998888 6888999998853 2 2    4444  565  6899999999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.59  E-value=0.0015  Score=75.96  Aligned_cols=106  Identities=17%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      ++++|+|+|++|+.+|..|++.|++|+|+|+.. +                |+.+..                       
T Consensus        15 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----------------gg~~~~-----------------------   54 (335)
T 2a87_A           15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-F----------------GGALMT-----------------------   54 (335)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-C----------------SCGGGS-----------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-C----------------CCceec-----------------------
Confidence            578999999999999999999999999999642 2                111100                       


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII  470 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i  470 (1428)
                               .. .+             ..       ++       .....+.+..+.+.+.+.+.+.+ .++.+. |+++
T Consensus        55 ---------~~-~~-------------~~-------~~-------~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i   96 (335)
T 2a87_A           55 ---------TT-DV-------------EN-------YP-------GFRNGITGPELMDEMREQALRFGADLRMED-VESV   96 (335)
T ss_dssp             ---------CS-CB-------------CC-------ST-------TCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEE
T ss_pred             ---------cc-hh-------------hh-------cC-------CCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEE
Confidence                     00 00             00       00       01112556677788888777777 566554 8777


Q ss_pred             eCC---eE-EEcCCcEEEeeEEEecCCCC
Q psy10545        471 TPT---SI-RINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       471 ~~~---~v-~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +..   .| ++.+|.+++++.||.|+|.+
T Consensus        97 ~~~~~~~v~~~~~g~~~~~d~lviAtG~~  125 (335)
T 2a87_A           97 SLHGPLKSVVTADGQTHRARAVILAMGAA  125 (335)
T ss_dssp             ECSSSSEEEEETTSCEEEEEEEEECCCEE
T ss_pred             EeCCcEEEEEeCCCCEEEeCEEEECCCCC
Confidence            652   26 67788899999999999965

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.58  E-value=0.0013  Score=79.61  Aligned_cols=58  Identities=10%  Similarity=-0.066  Sum_probs=47.0

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecc---eEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNK---TVEIITP--TS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~---~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++...+.+.|.+.+++.| .++.++   +|++|..  +.   |++.+|.+++|+.||.|+|..|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            34566788889999998888 688888   9999863  22   66778878999999999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.55  E-value=0.0013  Score=81.72  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ..||+||||||.||+.+|.||++. ++.+|+|||+++
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            469999999999999999999875 678999999987

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.54  E-value=0.0021  Score=73.90  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      ..+++|+|+|++|+.+|..|+++|++|+|+|+.  +                |+-+                        
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~----------------gg~~------------------------   52 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P----------------GGQL------------------------   52 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T----------------TGGG------------------------
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C----------------CCee------------------------
Confidence            458899999999999999999999999999987  3                1100                        


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI  469 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~  469 (1428)
                              ...                     .....++.        ...+....+.+.+.+.+.+.+ .++. ++|++
T Consensus        53 --------~~~---------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           53 --------TEA---------------------GIVDDYLG--------LIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             --------GGC---------------------CEECCSTT--------STTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             --------ccc---------------------ccccccCC--------CCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence                    000                     00000010        001566788888888888777 4555 88888


Q ss_pred             EeCCe----EEEcCCcEEEeeEEEecCCCC
Q psy10545        470 ITPTS----IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       470 i~~~~----v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +..+.    |++.+|.++.++.||.|.|..
T Consensus        95 i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           95 IENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             EEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             EEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            87542    677777899999999999976

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.53  E-value=0.0025  Score=79.05  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.+++|+|+|+.|+.+|..|++.|++|+|||+.+..                 ||.+..       ...|+.+.      
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~-----------------GGtw~~-------~~ypg~~~------   70 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGV-----------------GGVWYW-------NRYPGARC------   70 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS-----------------CTHHHH-------CCCTTCBC------
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCC-----------------CCcccc-------CCCCCcee------
Confidence            357899999999999999999999999999998755                 122111       11222110      


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCC---eEEecce
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINN---FLFNNKT  466 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~~  466 (1428)
                                   +++...              ....|...- ...........+.++.+.+.+.+.+.+   .++.+++
T Consensus        71 -------------dv~s~~--------------y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~  123 (549)
T 4ap3_A           71 -------------DVESID--------------YSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTR  123 (549)
T ss_dssp             -------------SSCTTT--------------SSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCC
T ss_pred             -------------CCCchh--------------cccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCE
Confidence                         110000              000000000 000001123567788888888887765   4778899


Q ss_pred             EEEEe--CC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        467 VEIIT--PT----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       467 v~~i~--~~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      |+++.  .+    .|++.+|.+++++.||.|+|..
T Consensus       124 V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          124 VTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             EEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             EEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            98885  23    3788889899999999999975

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.52  E-value=0.0016  Score=78.59  Aligned_cols=42  Identities=29%  Similarity=0.334  Sum_probs=36.4

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ||++|||||+||+++|++|++.+  .+|+|||+++..+.+++..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~   43 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRAYSR   43 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCeecce
Confidence            79999999999999999999974  7999999987775556543

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.50  E-value=0.0009  Score=82.99  Aligned_cols=58  Identities=19%  Similarity=0.112  Sum_probs=44.0

Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCC---eEEEEEec--CCcE--E---EcCEEEEcCCHHHHHHHhcCC
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNN---KVNKVHLK--NGQI--F---DADIIVSNADIINTYRNLLGQ  996 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~---~v~~V~~~--~G~~--i---~ad~VV~A~~~~~~~~~Ll~~  996 (1428)
                      +.+++.|++|++++.|++|..+++   ++++|++.  +|+.  +   .++.||+|++.......|+..
T Consensus       202 ~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~S  269 (536)
T 1ju2_A          202 NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLS  269 (536)
T ss_dssp             GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred             hhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHc
Confidence            334567899999999999999863   78999874  5653  4   568999999988766644433

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.50  E-value=0.0033  Score=77.73  Aligned_cols=123  Identities=17%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CChhhHhhhccCCCCh---------HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCc
Q psy10545        294 LPDKIIRNFYANKLSF---------FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQ  364 (1428)
Q Consensus       294 ~~~~~~~~Fl~~~~~~---------~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~  364 (1428)
                      .|.+.+..++......         ..+|++|+|+||+|+.+|..|++.|++|+|+|++...                  
T Consensus       186 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG------------------  247 (521)
T 1hyu_A          186 MTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGG------------------  247 (521)
T ss_dssp             CCHHHHHHHHCCSSCCHHHHHHHTSCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTG------------------
T ss_pred             CCHHHHHHHHhhcccccccccccccCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCC------------------
Confidence            4556667776654220         1246899999999999999999999999999864211                  


Q ss_pred             chhHHHHHHHHHhcCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeec
Q psy10545        365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICS  444 (1428)
Q Consensus       365 Gl~~~~~~~~~~~~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r  444 (1428)
                       .+..         ..                       .+        .     .       +..        ....++
T Consensus       248 -~~~~---------~~-----------------------~~--------~-----~-------~~~--------~~~~~~  266 (521)
T 1hyu_A          248 -QVLD---------TV-----------------------DI--------E-----N-------YIS--------VPKTEG  266 (521)
T ss_dssp             -GGTT---------CS-----------------------CB--------C-----C-------BTT--------BSSBCH
T ss_pred             -cccc---------cc-----------------------cc--------c-----c-------cCC--------CCCCCH
Confidence             1000         00                       00        0     0       000        001345


Q ss_pred             hHHHHHHHHHhccCC-eEEecceEEEEeCC-------eEEEcCCcEEEeeEEEecCCCC
Q psy10545        445 KHLNSYLIRALGINN-FLFNNKTVEIITPT-------SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       445 ~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~-------~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+.+.+.+.+.+.| .++.+++|+.+..+       .|++.+|.+++++.||.|+|..
T Consensus       267 ~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          267 QKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            677788888887778 57778899998632       2777888899999999999965

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.48  E-value=0.0017  Score=78.14  Aligned_cols=46  Identities=24%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ...+|++|||||+|||++|++|.+.++ .+|+|+|+++..+.+++++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~t~   49 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCHSP   49 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCccccc
Confidence            356899999999999999999999642 7999999998885455443

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.48  E-value=0.0012  Score=82.33  Aligned_cols=73  Identities=12%  Similarity=0.076  Sum_probs=52.6

Q ss_pred             HHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecC---Cc--EE---EcCEEEEcCCHHHHHHHhcCCCCCChhHHH
Q psy10545        935 KALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKN---GQ--IF---DADIIVSNADIINTYRNLLGQYAFGKKKYM 1005 (1428)
Q Consensus       935 ~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G~--~i---~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~ 1005 (1428)
                      .++.+.+.+ .|++|++++.|++|..+++++++|++.+   |+  ++   .++.||+|++.......|+.....|+..++
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~  278 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQ  278 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHH
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHH
Confidence            334444554 4899999999999999999999999865   64  33   789999999998766655444444554444


Q ss_pred             HH
Q psy10545       1006 NL 1007 (1428)
Q Consensus      1006 ~l 1007 (1428)
                      .+
T Consensus       279 ~~  280 (546)
T 1kdg_A          279 TV  280 (546)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=96.48  E-value=0.0022  Score=78.61  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=38.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .+|++|||||++||++|++|.+.+++.+|+|+|++...+.+..++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~   48 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATY   48 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEE
Confidence            589999999999999999999988779999999987774444444

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.48  E-value=0.005  Score=70.48  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=42.0

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCC-------eEEEcCCcEEEeeEEEecCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT-------SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~-------~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .++..+.+.+.+.+.+.+ .++.+++|+.+..+       .|++.+|.+++++.||.|+|..
T Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           53 TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            355677788888887777 57778899988642       2677788889999999999965

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.47  E-value=0.0019  Score=80.07  Aligned_cols=46  Identities=24%  Similarity=0.398  Sum_probs=39.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      ..+|++|||||+|||++|++|.+.+  .+|+|+|+++..+.+++++..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~t~~~   48 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTYTLRN   48 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCEECC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCceeeccc
Confidence            4689999999999999999999964  799999999888667776654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.46  E-value=0.0012  Score=80.89  Aligned_cols=55  Identities=16%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|..+ +++..|.+++ .++.+|.||+|++..
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~~~-~~i~~D~vi~a~G~~  281 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVETDK-GTYKADLVLVSVGVK  281 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEETT-EEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEECC-CEEEcCEEEECcCCC
Confidence            567788889999999999999999999865 5556677654 489999999999754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.46  E-value=0.0018  Score=76.12  Aligned_cols=183  Identities=15%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCeEEEcCCcEEEeeEEEecCCCCCCCCC----cceEEEEEEEEEec
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNSQFD----GIYQIFLGQQWNLS  514 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~S~~~~----~~~q~~~g~~~~~~  514 (1428)
                      +.++...+.+.|.+++.+.| .++. ++|+++..+       .+ +|+.||.|+|..|..+.    ...+..-|.-+.++
T Consensus       137 ~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~-------~~-~a~~VV~A~G~~s~~l~~~~~~~~~p~rg~~~~~~  207 (363)
T 1c0p_A          137 LSVHAPKYCQYLARELQKLGATFER-RTVTSLEQA-------FD-GADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLVK  207 (363)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT-------CS-SCSEEEECCGGGGGTSBTTCCTTEEEEEEEEEEEE
T ss_pred             ceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhhc-------Cc-CCCEEEECCCcchhhccCcccCCccccCCeEEEEe
Confidence            45778899999999998888 5655 777777543       12 79999999999876321    12233334333343


Q ss_pred             CCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-C-CCCHHHHHHHHHHHHHH-cC-C------ccce
Q psy10545        515 SPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-P-FLKIDMLKKSIKDYAIK-NR-W------KLKN  584 (1428)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-~-~~~~~~~~~~l~~~~~~-~~-~------~~~~  584 (1428)
                      .+..  ... +...  .. .. . .|+.|..++.+.++.+..... . ..+.+.. +.+.+.+.+ ++ +      .-.+
T Consensus       208 ~~~~--~~~-~~~~--~~-~~-~-~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~-~~l~~~~~~~~P~l~~~~~~~~~~  278 (363)
T 1c0p_A          208 SPCK--RCT-MDSS--DP-AS-P-AYIIPRPGGEVICGGTYGVGDWDLSVNPETV-QRILKHCLRLDPTISSDGTIEGIE  278 (363)
T ss_dssp             CCCC--CCE-EECS--CT-TC-C-EEEEEETTTEEEEECCCEETCCCCSCCHHHH-HHHHHHHHHHCGGGSSSSSGGGCE
T ss_pred             CCcc--cce-Eeec--cC-CC-c-EEEEEcCCCEEEEEeeeccCCCCCCCCHHHH-HHHHHHHHHhCccccCCcccccce
Confidence            3321  111 1110  01 11 1 677888777888876543222 1 1122222 233333322 22 1      1124


Q ss_pred             eeeeeeeeecccCCchhhh--h---------c--cCcccccccccc-----cc--cCCCCChHHHHHHHHHHHhhc
Q psy10545        585 IEREEIGSIPIALKNEKII--K---------F--KKTICVGLRANL-----LH--ATTGYSLPIAIQLAENIAKYS  640 (1428)
Q Consensus       585 ~~~~~~~~~Pl~~~~~~~~--~---------~--~rv~lvGdAA~~-----vh--P~~G~G~~~a~~la~~l~~~~  640 (1428)
                      +.+.-.+..|+........  .         .  +...++|+..+.     ++  -..|.||..+...++.+++.+
T Consensus       279 i~~~w~G~rp~t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~a~li  354 (363)
T 1c0p_A          279 VLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLV  354 (363)
T ss_dssp             EEEEEEEEEEEETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EeeceEEECCCCCCCceeEEEecccccccccCccccccccccccccccceEEEecCCCCcchheeccHHHHHHHHH
Confidence            4444456666543211100  0         0  122345554432     22  345677888878888777654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.46  E-value=0.0012  Score=81.02  Aligned_cols=55  Identities=20%  Similarity=0.286  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|.. ++++..|.+ +|+++.+|.||+|++..
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~  290 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFR  290 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCC
Confidence            56778888999999999999999999985 555455666 67899999999999653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.42  E-value=0.0024  Score=78.26  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      +|++|||||+|||++|++|++.+.+.+|+|+|+++..+.++.++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~   47 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVR   47 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEe
Confidence            699999999999999999999764449999999987755565543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.41  E-value=0.0019  Score=80.38  Aligned_cols=38  Identities=26%  Similarity=0.508  Sum_probs=33.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ..+||+||||||.||+.+|.||++. ++.+|+|||+++.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            3569999999999999999999986 5689999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.39  E-value=0.011  Score=72.06  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      ++|++|+|+|++|+.+|..|++.|++|+|||+.+..
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            357899999999999999999999999999988654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.39  E-value=0.0028  Score=74.12  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=38.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC-CCCCCceeEEe
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS-SSVKNHIWSFH   53 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~-~~~~~~tw~~w   53 (1428)
                      ...+|++|||||+|||++|++|.+.+  .+|+|+|++ ...+.+.+++-
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~t~~   88 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIKTFH   88 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCCEEC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCceeeec
Confidence            34689999999999999999999974  799999999 66665666664

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.39  E-value=0.0027  Score=73.06  Aligned_cols=44  Identities=25%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             HcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCH
Q psy10545        943 NLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADI  986 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~  986 (1428)
                      +.|++|+++++|++|..+++++.+|++.   +|+  ++.+|.||++++.
T Consensus       202 ~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL  250 (319)
T ss_dssp             HTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred             cCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence            4589999999999998776656677764   675  6899999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.38  E-value=0.0021  Score=75.80  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=36.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ...+|++|||||+|||++|++|++.  +++|+|+|+++..+.+.++.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~~   71 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIGGNAYDC   71 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSGGGCCE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCCCCcccee
Confidence            3468999999999999999999986  47999999988774333333

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.37  E-value=0.0031  Score=77.45  Aligned_cols=46  Identities=17%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ...+|++|||||+|||++|++|.+.+  .+|+|+|+++..+.++|++-
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~~~   54 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRVWTAR   54 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCCEEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCceeeec
Confidence            34689999999999999999999864  79999999988866676654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.37  E-value=0.0015  Score=79.39  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=32.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPG  747 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~G  747 (1428)
                      +||+|||||++|++||..|++.  |++|+|+|+++.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4899999999999999999998  99999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.36  E-value=0.0026  Score=73.14  Aligned_cols=53  Identities=8%  Similarity=0.069  Sum_probs=38.5

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCCe--EE-EcCCcEEEeeEEEecCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS--IR-INNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~--v~-l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+..+.+.+.+.+.+.+ .++.+ +|+.+....  ++ +.+|.++.++.||.|+|..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~  115 (320)
T 1trb_A           59 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGAS  115 (320)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCC
Confidence            455677777777777777 45555 488886432  33 5678889999999999966

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.34  E-value=0.0015  Score=78.17  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|.  ++   .|++.+|+++.+|.||++++..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV--DG---VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE--TT---EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC---EEEECCCCEEEcCEEEECcCCC
Confidence            5677888889999999999999999998  44   5778899999999999999653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=96.32  E-value=0.003  Score=76.12  Aligned_cols=46  Identities=20%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      |..++|++|||+|++|+++|++|++.+  ++|+++|++...+.+++++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSCEE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCcccccccc
Confidence            456799999999999999999999964  7999999998885555554

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.30  E-value=0.0018  Score=79.48  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ..+.+.+.+.++++|++|++++.|++|..++++ +.|++.+|+++.||.||++++..
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~-~~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCe-EEEEECCCCEEECCEEEECCCCC
Confidence            457778888899999999999999999887776 47888999999999999999753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.27  E-value=0.017  Score=70.23  Aligned_cols=47  Identities=23%  Similarity=0.377  Sum_probs=36.9

Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CC--cEEEcCEEEEcCCH
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NG--QIFDADIIVSNADI  986 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G--~~i~ad~VV~A~~~  986 (1428)
                      +.+++.|++|+++++|++|..++++ +.|.+. +|  +++.+|.||++++.
T Consensus       220 ~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          220 KQFKKLGVTILTATKVESIADGGSQ-VTVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             HHHHHHTCEEECSCEEEEEEECSSC-EEEEEESSSCEEEEEESEEEECSCE
T ss_pred             HHHHHcCCEEEeCcEEEEEEEcCCe-EEEEEEcCCceEEEEcCEEEECCCC
Confidence            4455679999999999999877665 445554 66  67999999999964

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.27  E-value=0.002  Score=77.83  Aligned_cols=35  Identities=23%  Similarity=0.454  Sum_probs=32.8

Q ss_pred             cceeeecCCCcchHHHHHHHHh---CCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQT---AGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~---~G~~V~VlEa~~~  745 (1428)
                      ++||+|||||++|++||..|++   .|++|+|+|+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            5799999999999999999999   8999999999874

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.26  E-value=0.0017  Score=80.61  Aligned_cols=37  Identities=32%  Similarity=0.543  Sum_probs=33.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +||+||||+|.||+.+|.||++. ++.+|+|||+++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence            59999999999999999999984 67999999998755

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.25  E-value=0.0019  Score=80.34  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             HcCcEEEeCceeeEEEEe--CCeEEEEEec--CCc--EEEc-CEEEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        943 NLGGNLILNSQVISIYVN--NNKVNKVHLK--NGQ--IFDA-DIIVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~--~~~v~~V~~~--~G~--~i~a-d~VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      +.|.+|++++.|++|..+  ++++++|++.  +|+  ++.| +.||++++...+.+.|+-....|+..
T Consensus       218 r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~  285 (577)
T 3q9t_A          218 KPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRE  285 (577)
T ss_dssp             CTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHH
T ss_pred             CCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHH
Confidence            458999999999999999  7899999875  364  4667 56999999988877665544445443

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.25  E-value=0.0029  Score=77.42  Aligned_cols=46  Identities=22%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS   51 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~   51 (1428)
                      +...+|++|||||++||++|++|.+.+ ..+|+|+|+++..+.+.++
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence            445789999999999999999999975 3689999999887544444

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.23  E-value=0.0017  Score=79.15  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=33.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++|||||+||+++|.+|++.  +++|+|||+++..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~--G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA--KYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCC
Confidence            479999999999999999999986  4799999988766

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.22  E-value=0.0023  Score=74.93  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             ccEEEECccHHHHHHHHHHhccC----CCCeEEEEccCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYN----PKLNVLLLELSS   43 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~----~~~~v~~~~~~~   43 (1428)
                      .|++|||||.+|+++|++|++++    |+.+|+|||++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            39999999999999999999986    668999999875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.21  E-value=0.0031  Score=75.68  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=35.6

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...+|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            4578999999999999999999998877789999998654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=96.21  E-value=0.0032  Score=74.04  Aligned_cols=43  Identities=26%  Similarity=0.557  Sum_probs=36.2

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ++|++|||||+||+++|++|++.  +.+|+|+|+++..+.++.++
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~~~~~   43 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGNAYTE   43 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSGGGCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCcceEee
Confidence            37999999999999999999997  47999999998775445444

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.20  E-value=0.0034  Score=75.53  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      +|++|||||++||++|++|++.+  .+|+|+|+++..+.++.++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~~~~   43 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRFTNLS   43 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTSSEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCceeeec
Confidence            49999999999999999999974  89999999987754555543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.18  E-value=0.0038  Score=73.44  Aligned_cols=54  Identities=20%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+.+..+.+.+.+.+.+.| .++.+++|+++..+  .  |++.+| ++.++.||.|.|..
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~  142 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDY  142 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence            3566778888888877777 67778899888743  2  566555 69999999999977

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.17  E-value=0.0023  Score=75.36  Aligned_cols=50  Identities=16%  Similarity=0.326  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      ..+.+.+.+.+++.|++|+++++|++|.  .+   +|++++|+ +.+|.||+|++.
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~---~v~~~~g~-i~~D~vi~a~G~  232 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN--EE---GVLTNSGF-IEGKVKICAIGI  232 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC--SS---EEEETTEE-EECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE--ee---EEEECCCE-EEcCEEEECcCC
Confidence            4677788888999999999999999997  22   47788887 999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.17  E-value=0.0029  Score=76.91  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=37.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .++|++|||||+|||++|++|.+.  +.+|+|+|++...+.+++++
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~~   47 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRVGGRTWTD   47 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTTCCEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCCCCceecc
Confidence            468999999999999999999986  47899999998775455443

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=96.17  E-value=0.0032  Score=75.81  Aligned_cols=51  Identities=18%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhccCC-eEEecceEEEEeC-C-e----EEEcCCcEEEeeEEEecCCCC
Q psy10545        445 KHLNSYLIRALGINN-FLFNNKTVEIITP-T-S----IRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       445 ~~l~~~L~~~~~~~~-~~~~~~~v~~i~~-~-~----v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+-++|.+.+++.| .++.+++|+.|.. + +    |++.+|++++|+.||.+.|..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            467888999888887 7889999998864 2 2    678888899999999988765

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.16  E-value=0.0035  Score=76.74  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ..+|++|||||++||++|++|.+.+  .+|+|+|++...+.+++++-
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~t~~   59 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVGTHA   59 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceeeeec
Confidence            4689999999999999999999864  79999999988865666654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.12  E-value=0.0029  Score=78.00  Aligned_cols=42  Identities=26%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .+|||||||++||++|++|++.+  .+|+|+|+++..+.++++|
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~t~   43 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAYVY   43 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------CEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEEEE
Confidence            68999999999999999999975  7999999998885566655

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=96.06  E-value=0.0044  Score=76.48  Aligned_cols=45  Identities=27%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ..+|++|||||++||++|++|.+.+  .+|+|+|+++..+.+.+++.
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~~~   56 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLRSVS   56 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceeeec
Confidence            3589999999999999999999864  79999999988855565554

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.05  E-value=0.0039  Score=73.93  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .++|++|||||+||+++|.+|.+.+++.+|+++|++.
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            4689999999999999999999988778899999764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.00  E-value=0.0048  Score=74.17  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHhccCC-eEEecceEEEEeCC--eEEEcCCcEEEeeEEEecCCCC
Q psy10545        445 KHLNSYLIRALGINN-FLFNNKTVEIITPT--SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       445 ~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      ..+-+.|.+.+.+.| .++.+++|++|..+  .+...+|++++||.||-|-|..
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHH
Confidence            345677888887777 78889999998743  3534578889999999888764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.98  E-value=0.0051  Score=74.82  Aligned_cols=56  Identities=9%  Similarity=0.029  Sum_probs=42.6

Q ss_pred             eeechHHHHHHHHHhccCC-e--EEecceEEEEeC--C----eEEEcC---C--cEEEeeEEEecCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-F--LFNNKTVEIITP--T----SIRINN---K--KIINANCIIDGRGLKN  496 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~--~~~~~~v~~i~~--~----~v~l~~---g--~~~~a~lvI~AdG~~S  496 (1428)
                      .+++..+.+.|.+.+.+.+ .  ++.+++|+.+..  +    .|++.+   |  .++.+|.||.|+|..|
T Consensus        97 ~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A           97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             SCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCC
Confidence            4678888888988887766 3  778899998862  3    366654   4  5789999999999763

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.98  E-value=0.0043  Score=72.27  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             ccEEEECccHHHHHHHHHHhc-cCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQ-YNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~-~~~~~~v~~~~~~~~~   45 (1428)
                      +|++|||||++|+++|+.|++ ...+.+|+|+|+++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            699999999999999999998 2245899999988655

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.96  E-value=0.0047  Score=75.98  Aligned_cols=43  Identities=30%  Similarity=0.533  Sum_probs=38.0

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      +|++|||||+|||++|++|.+.+  .+|+|+|+++..+.++|++-
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~t~~   82 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSWSSN   82 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcceecc
Confidence            89999999999999999999964  79999999988866777654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=95.96  E-value=0.0045  Score=76.73  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..++|++|||+|+|||++|++|++ +  .+|+|||+.+..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~   42 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVT   42 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCC
Confidence            346899999999999999999998 4  799999998765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.95  E-value=0.0051  Score=75.99  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=33.0

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      |..+||++|||||+||+++|.+|++.  +++|+|||+++.
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~--G~~V~liEk~~~   66 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQY--GKKVMVLDFVTP   66 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCc
Confidence            34469999999999999999999996  479999998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.94  E-value=0.003  Score=78.25  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||+||||+|.||+.+|.+|++   +.+|+|||.++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc---CCcEEEEecCCCc
Confidence            46999999999999999999999   4799999998643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=95.91  E-value=0.0034  Score=78.82  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++|++|||+|+|||++|+.|++.+++++|+|||+.+..
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~   42 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            468999999999999999999998766899999998654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.86  E-value=0.0048  Score=75.82  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++|||||+||+++|.+|++.+  .+|+|||+++..
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~   60 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTY   60 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence            4699999999999999999999964  799999988766

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.82  E-value=0.0043  Score=77.63  Aligned_cols=62  Identities=11%  Similarity=-0.081  Sum_probs=45.6

Q ss_pred             HHHcCcEEEeCceeeEEEEeC----CeEEEEEec--CCc--EEEc-CEEEEcCCHHHHHHHhcCCCCCChh
Q psy10545        941 FQNLGGNLILNSQVISIYVNN----NKVNKVHLK--NGQ--IFDA-DIIVSNADIINTYRNLLGQYAFGKK 1002 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~~----~~v~~V~~~--~G~--~i~a-d~VV~A~~~~~~~~~Ll~~~~~p~~ 1002 (1428)
                      ..+.|++|++++.|++|..++    +++++|+..  +|+  ++.| +.||+|++...+.+.|+.....|..
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~  311 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKS  311 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHH
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHH
Confidence            345689999999999999874    478898874  564  5678 8999999987766655544333443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.82  E-value=0.0048  Score=75.73  Aligned_cols=38  Identities=8%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             cccEEEECccHHHHHHHHHHhccC-CCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYN-PKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~-~~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|.+|++.+ ++.+|+|||+++..
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            489999999999999999999976 67999999988644

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.81  E-value=0.005  Score=77.75  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             cccEEEECccHHHHHHHHHHhcc----CCCCeEEEEccCCCCCCce
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQY----NPKLNVLLLELSSSVKNHI   49 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~----~~~~~v~~~~~~~~~~~~t   49 (1428)
                      ++||+|||+|+|||++|+.|++.    +|+++|+|||+......++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s   67 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGA   67 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCST
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcc
Confidence            58999999999999999999986    2468999999986543334

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=95.79  E-value=0.0042  Score=76.67  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..++||+|||+|+|||++|++|++.+  .+|+|||+.+..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            34689999999999999999999964  799999999776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.77  E-value=0.0066  Score=75.13  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             CCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          2 NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         2 ~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...+..++|++|||||+||+++|++|++.  +.+|+|||+++..
T Consensus        37 ~~~~~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~   78 (523)
T 1mo9_A           37 DENDPREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFL   78 (523)
T ss_dssp             CTTCCSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS
T ss_pred             CCCCCCcCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            34455679999999999999999999986  4799999998655

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.73  E-value=0.0041  Score=77.86  Aligned_cols=37  Identities=24%  Similarity=0.167  Sum_probs=32.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++|++|||+|+|||++|+.|++.+  .+|+|||+.+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~   42 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence            3689999999999999999999864  799999998655

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.72  E-value=0.007  Score=72.89  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .+|++|||||+||+++|.+|.+.+.+.+|+|||+++.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            5899999999999999999999876679999998754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.69  E-value=0.0056  Score=74.86  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++|||||+||+++|++|++.+  ++|+|||+++..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCC--CEEEEEeCCCcc
Confidence            4699999999999999999999974  799999998754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.67  E-value=0.0053  Score=75.53  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHcC-cEEEeCceeeEEEEeC-C-eEEEEEec--CC-----cEEEcCEEEEcCCHHHHHHHhc
Q psy10545        934 IKALIKLFQNLG-GNLILNSQVISIYVNN-N-KVNKVHLK--NG-----QIFDADIIVSNADIINTYRNLL  994 (1428)
Q Consensus       934 ~~~L~~~l~~~G-~~V~~~~~V~~I~~~~-~-~v~~V~~~--~G-----~~i~ad~VV~A~~~~~~~~~Ll  994 (1428)
                      ..++.+.+.++| ++|++++.|++|..++ + ++++|++.  +|     .++.|+.||+|++...+.+.|+
T Consensus       229 ~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~  299 (507)
T 1coy_A          229 DKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLV  299 (507)
T ss_dssp             TTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHH
Confidence            334444455555 9999999999999986 4 78999874  56     3688999999999887766443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.67  E-value=0.0068  Score=72.44  Aligned_cols=39  Identities=15%  Similarity=0.094  Sum_probs=34.2

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ...+|++|||||+||+++|.+|.+.+++.+|+|||+++.
T Consensus         5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             -CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            356899999999999999999999887678999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.63  E-value=0.0089  Score=74.23  Aligned_cols=53  Identities=30%  Similarity=0.235  Sum_probs=42.7

Q ss_pred             CCCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545          1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus         1 ~~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      |+-.|.++||++|||.|+.|..+|..|++.  +++|++||+++.++...+||=-+
T Consensus         1 m~~~~~~~~D~~i~GtGl~~~~~a~~~~~~--g~~vl~id~~~~~gg~~~~~~l~   53 (650)
T 1vg0_A            1 MADNLPSDFDVIVIGTGLPESIIAAACSRS--GQRVLHVDSRSYYGGNWASFSFS   53 (650)
T ss_dssp             --CCCCSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGCEECHH
T ss_pred             CCccCCCcCCEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCCcccCccccccHH
Confidence            555677789999999999999999999996  58999999999985445666433

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.59  E-value=0.0052  Score=73.30  Aligned_cols=49  Identities=12%  Similarity=-0.043  Sum_probs=40.5

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +.+.+++.|++|++++.|+.+..+++. ..|++.+|+++.+|.||++.|.
T Consensus       208 ~~~~l~~~gi~v~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          208 YGFGTENALIEWHPGPDAAVVKTDTEA-MTVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             SCTTSTTCSEEEECTTTTCEEEEETTT-TEEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHhcCcEEEeCceEEEEEecccc-eEEEcCCCcEEEeeEEEEecCc
Confidence            334456789999999999999887765 5688999999999999998753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.59  E-value=0.0064  Score=74.48  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |+.+||++|||||+||+++|.+|++.  +.+|+|||+++..
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~~   41 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTL   41 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            45579999999999999999999986  4799999987655

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.55  E-value=0.0072  Score=74.02  Aligned_cols=49  Identities=20%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             HHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        447 LNSYLIRALGINN-FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       447 l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+.+.+.+++.| .++.+++|+.++.+    .|++.+|+++.+|.||.|.|..
T Consensus       234 ~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          234 LRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence            3455666666667 67888999998754    2778888899999999999865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.53  E-value=0.0082  Score=72.82  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=34.1

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5999999999999999999998788999999998754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.52  E-value=0.0073  Score=73.50  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||||+||+++|.+|++.  +++|+|||++
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~   36 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF--GKRVALIESK   36 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC--CCcEEEEcCC
Confidence            469999999999999999999985  5899999987

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.52  E-value=0.011  Score=72.64  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      ...+|++|||||++||++|+.|.+.+  .+|+|+|+++..+.+.+++.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~~~~~   76 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVRTYR   76 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCCEEE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCceeeec
Confidence            34689999999999999999999975  79999999988755555543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.51  E-value=0.0072  Score=74.36  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             cccEEEECccHHHHHHHHHHhccCC-CCeEEEEccCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNP-KLNVLLLELSS   43 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~-~~~v~~~~~~~   43 (1428)
                      +||++|||||+||+++|++|++..| +.+|+|||+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            5899999999999999999999855 68999999886

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.51  E-value=0.0076  Score=73.37  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL   41 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~   41 (1428)
                      .+||++|||||+||+++|++|++.  +++|+|||+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~--G~~V~liEk   36 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL--GKKVAIAEE   36 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT--TCCEEEEES
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC--CCEEEEEeC
Confidence            369999999999999999999996  479999998

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.51  E-value=0.0067  Score=74.43  Aligned_cols=34  Identities=24%  Similarity=0.142  Sum_probs=31.1

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      +||++|||||+||+++|.+|++.  +++|+|||+++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~--G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH--TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--CSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCC
Confidence            59999999999999999999986  47999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.49  E-value=0.0086  Score=72.99  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +.++|++|||||+||+++|.+|++.  +.+|+|||++ ..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~-~~   38 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQ--GAQVTLIERG-TI   38 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS-ST
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC-CC
Confidence            3469999999999999999999986  4799999987 44

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.0072  Score=73.92  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||||+||+++|.+|++.  +.+|+|||++
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~--g~~V~liE~~   43 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY--GAKTLLVEAK   43 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--SCCEEEEESS
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence            479999999999999999999985  5899999987

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.48  E-value=0.0095  Score=73.04  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=36.0

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +...+|++|||||+||+++|..|.+..++.+|+|||+++..
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            44579999999999999999999888778999999988654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.47  E-value=0.011  Score=70.01  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=36.2

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ++|++|||||++|+++|++|.+.  +.+|+|+|+++..+.+++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~~~~~   45 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSYDA   45 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGGGCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecCCcCCccccc
Confidence            47999999999999999999986  47999999998775444443

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.46  E-value=0.0062  Score=76.96  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..++||+|||+|+|||++|+.|++.+  .+|+|||+.+..
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~   40 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK   40 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence            34689999999999999999999864  799999998654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.44  E-value=0.0074  Score=73.83  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||||+||+++|.+|++.  +++|+|||++
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~--G~~V~liE~~   52 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAEL--GARAAVVESH   52 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC
Confidence            469999999999999999999996  4799999965

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.44  E-value=0.01  Score=71.93  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|++|.+.+++.+|+|||+++..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999998788999999998644

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.43  E-value=0.0078  Score=72.96  Aligned_cols=49  Identities=12%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             HHHHHHHHhccCC-eEEecceEEEEeCC-----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        447 LNSYLIRALGINN-FLFNNKTVEIITPT-----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       447 l~~~L~~~~~~~~-~~~~~~~v~~i~~~-----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+.+.+.+++.| .++.+++|++++.+     .|++.+|+++.+|.||.|.|..
T Consensus       210 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          210 ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCC
Confidence            4455666666667 68888899988642     3677888899999999999966

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.42  E-value=0.015  Score=72.66  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=42.0

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEe-CC-e----EEEc--CCc--EEEeeEEEecCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIIT-PT-S----IRIN--NKK--IINANCIIDGRGLKNS  497 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~-~~-~----v~l~--~g~--~~~a~lvI~AdG~~S~  497 (1428)
                      ....+.+.|.+++.+.| .++.+++|+++. .+ +    |.+.  +|+  ++.|+.||.|+|..|.
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            35678899999998888 688899999884 33 2    4444  564  6899999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.32  E-value=0.01  Score=72.06  Aligned_cols=37  Identities=14%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +|++|||||+||+++|.+|++.+++.+|+|||+++..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5999999999999999999998778999999988643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.32  E-value=0.0087  Score=73.07  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999998788999999998654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=95.29  E-value=0.0097  Score=74.07  Aligned_cols=38  Identities=34%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+||+||||+|+||+.+|.+|++.  +++|+|||.++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~--g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            3579999999999999999999995  5899999988643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.27  E-value=0.011  Score=72.16  Aligned_cols=38  Identities=18%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +.+||++|||||+||+++|.+|++.+  .+|+|||+++..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~   41 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence            45799999999999999999999874  799999998766

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.23  E-value=0.0082  Score=72.28  Aligned_cols=54  Identities=22%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADI  986 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~  986 (1428)
                      .....+.+.+.++++|+++++|+.|++|+  +++ +.+...+|  +++.+|.||++++.
T Consensus       199 ~~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~-~~~~~~~g~~~~i~~d~vi~~~G~  254 (430)
T 3hyw_A          199 IGASKRLVEDLFAERNIDWIANVAVKAIE--PDK-VIYEDLNGNTHEVPAKFTMFMPSF  254 (430)
T ss_dssp             STTHHHHHHHHHHHTTCEEECSCEEEEEC--SSE-EEEECTTSCEEEEECSEEEEECEE
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCceEEEEe--CCc-eEEEeeCCCceEeecceEEEeccC
Confidence            34555667788899999999999999984  444 33443343  57999999999853

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=95.23  E-value=0.0094  Score=73.10  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .+||++|||||+||+++|.+|++.+  ++|+|||+.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecc
Confidence            4799999999999999999999864  7999999754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.23  E-value=0.01  Score=73.08  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      +||++|||+||||+.+|.++++.+  ++|+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHG--ARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTT--CCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence            699999999999999999999964  89999997653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.19  E-value=0.0096  Score=74.66  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++|++|||+|+|||++|+.|++.+  .+|+|||+....
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~~   53 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFPT   53 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence            3589999999999999999999864  799999998654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=95.12  E-value=0.012  Score=71.93  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .+||++|||||+||+++|.+|++.+  ++|+|||+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G--~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNG--ARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CEEEEEEec
Confidence            4799999999999999999999964  799999953

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.06  E-value=0.011  Score=72.46  Aligned_cols=48  Identities=10%  Similarity=0.214  Sum_probs=36.9

Q ss_pred             HHHHHHHhccCC-eEEecceEEEEeCC-----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        448 NSYLIRALGINN-FLFNNKTVEIITPT-----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       448 ~~~L~~~~~~~~-~~~~~~~v~~i~~~-----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+.+.+.+++.| .++.+++|+.+..+     .|++.+|+++.+|.||-|.|..
T Consensus       238 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          238 REEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence            445666666677 68888999988642     2677888899999999998865

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=95.03  E-value=0.013  Score=73.72  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...||++|||+|+||+++|+.|++.  +++|+|||+.+..
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~--G~~V~liE~~~~~   81 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEID   81 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhC--CCcEEEEeccCCC
Confidence            3469999999999999999999995  4799999988655

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.02  E-value=0.016  Score=66.73  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +|++|||||+||+.+|++|++.+  .+|+|||.++..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G--~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLG--VPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCc
Confidence            69999999999999999998864  789999988754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.02  E-value=0.013  Score=70.98  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +||++|||||+||+++|.+|++.  +.+|+|||+++..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence            48999999999999999999986  4799999998655

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.00  E-value=0.014  Score=71.13  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +||++|||||+||+++|.+|++.  +.+|+|||+++..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCc
Confidence            58999999999999999999986  4799999998665

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.98  E-value=0.014  Score=72.84  Aligned_cols=151  Identities=14%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEc---CCc--EEEeeEEEecCCCCCC---CCC------c
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRIN---NKK--IINANCIIDGRGLKNS---QFD------G  501 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~---~g~--~~~a~lvI~AdG~~S~---~~~------~  501 (1428)
                      ++...+...|.+.+.+.| .++.+++|+++..  +.   |++.   +|+  +++|+.||.|.|..|.   ...      .
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~  264 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSP  264 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCSSCCCC
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhccCccCc
Confidence            455677778888888788 7888899998863  22   4442   343  6999999999998753   111      1


Q ss_pred             ceEEEEEEEEEecCC-cCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEec---c--CCCCCHHHHHHHHHHHH
Q psy10545        502 IYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYT---K--KPFLKIDMLKKSIKDYA  575 (1428)
Q Consensus       502 ~~q~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~---~--~~~~~~~~~~~~l~~~~  575 (1428)
                      ..+..-|.-+.++.+ ......++++..  .. +| ..+|++|.. +...++.+...   .  ....+.+.. +.+.+.+
T Consensus       265 ~i~p~rG~~l~~~~~~~~~~~~~~~~~~--~~-dg-r~~~~~P~~-~~~~iG~t~~~~~~~~~~~~~~~~~~-~~ll~~~  338 (571)
T 2rgh_A          265 KMRPTKGIHLVVDAKKLPVPQPTYFDTG--KQ-DG-RMVFAIPRE-NKTYFGTTDTDYQGDFTDPKVTQEDV-DYLLDVI  338 (571)
T ss_dssp             CBCCEEEEEEEEEGGGSCCSSCEEEECS--SS-SS-CEEEEEEET-TEEEECCCCEECCSCSSSCCCCHHHH-HHHHHHH
T ss_pred             eeeccceEEEEeccccCCCCcEEEEecc--CC-CC-cEEEEEEcC-CeEEEcCCCcCCCCCcCCCCCCHHHH-HHHHHHH
Confidence            122233444444322 122234433321  01 22 246788985 56667654321   1  112223332 2233333


Q ss_pred             HH-cC---CccceeeeeeeeeecccCC
Q psy10545        576 IK-NR---WKLKNIEREEIGSIPIALK  598 (1428)
Q Consensus       576 ~~-~~---~~~~~~~~~~~~~~Pl~~~  598 (1428)
                      .+ ++   +...++...-.|.-|+...
T Consensus       339 ~~~~P~~~l~~~~v~~~waG~Rp~~~d  365 (571)
T 2rgh_A          339 NHRYPEANITLADIEASWAGLRPLLIG  365 (571)
T ss_dssp             HHHSTTTCCCGGGCCEEEEEEECCBCC
T ss_pred             HHhcCccCCchhceeEEeEEeeeccCC
Confidence            22 33   2333455444678888743

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.97  E-value=0.017  Score=70.43  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCC-eEEEEccCCCCCCceeEE
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKL-NVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~-~v~~~~~~~~~~~~tw~~   52 (1428)
                      ..+|++|||+|+||+++|++|.+.+  . +|+|+|+++..+.+.+++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~~~   47 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMHKT   47 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCceeec
Confidence            4689999999999999999999864  6 899999998775455544

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.93  E-value=0.016  Score=70.86  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            46999999999999999999987677999999988654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=94.88  E-value=0.026  Score=64.46  Aligned_cols=31  Identities=16%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEE-EcC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTII-LEQ  342 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~l-ie~  342 (1428)
                      ++++|+|+|++|+.+|..|+++|++|+| +|+
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~   36 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK   36 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC
Confidence            3678999999999999999999999999 998

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.84  E-value=0.019  Score=72.29  Aligned_cols=38  Identities=11%  Similarity=0.219  Sum_probs=34.7

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..|++|||||+||+++|.+|.+.+++.+|+|+|+++..
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            47999999999999999999998788999999998754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.82  E-value=0.016  Score=70.32  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL   41 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~   41 (1428)
                      .+||++|||||+||+++|.+|++.+  .+|+|||+
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~   36 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG   36 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc
Confidence            4699999999999999999999874  79999998

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=94.82  E-value=0.018  Score=68.59  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=31.9

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .|+|||||+||+++|.+|.+.+++.+|+|||+++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            58999999999999999998888899999998753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.81  E-value=0.021  Score=68.06  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            5899999999999999999998877799999998744

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=94.77  E-value=0.022  Score=73.28  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=39.2

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      .+|++|||||+||+++|+.|++.+  .+|+|+|+++..+.++|.+..
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~ggri~T~~~  380 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGGRVWDDKS  380 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTTCCEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceeceeeeccc
Confidence            579999999999999999999975  799999999877667877643

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.77  E-value=0.0016  Score=67.90  Aligned_cols=90  Identities=12%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhccC-CCccCceEEE--EecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCC
Q psy10545       1100 SIKLKNIVFMYLEQYCI-PNLRKKLITQ--RIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAG 1176 (1428)
Q Consensus      1100 ~ee~~~~vl~~L~~~~~-P~l~~~i~~~--~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~ 1176 (1428)
                      ++++++.++++|.+ ++ |.+ ..+...  ..   .+|....+. .|+.....++..  ..+++....| +.+|||||++
T Consensus        56 ~~e~~~~~l~~L~~-~~g~~~-~~~~~~~~~~---~~W~~dp~~-~Ga~s~~~pg~~--~~~~~~l~~p-~grl~FAGe~  126 (181)
T 2e1m_C           56 DAERYGYALENLQS-VHGRRI-EVFYTGAGQT---QSWLRDPYA-CGEAAVYTPHQM--TAFHLDVVRP-EGPVYFAGEH  126 (181)
T ss_dssp             TTTTHHHHHHHHHH-HHCGGG-GGTEEEEEEE---EESSSCTTT-SSSEECCCTTHH--HHHHHHHHSC-BTTEEECSGG
T ss_pred             HHHHHHHHHHHHHH-HhCCCc-HhhccCccee---cccCCCCCC-CCcccCcCCCch--HHHHHHHhCC-CCcEEEEEHH
Confidence            46778899999998 66 655 333211  11   122222111 343221222221  1122333444 7899999999


Q ss_pred             ccCC-CCcccccccccccccccc
Q psy10545       1177 THPG-AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus      1177 t~pg-~gv~GA~~sg~~~a~~i~ 1198 (1428)
                      |... +.|+||+.||..+|..|.
T Consensus       127 ts~~~g~~eGAl~SG~raA~~i~  149 (181)
T 2e1m_C          127 VSLKHAWIEGAVETAVRAAIAVN  149 (181)
T ss_dssp             GTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             HcCCccCHHHHHHHHHHHHHHHH
Confidence            8742 369999999999998875

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=94.76  E-value=0.019  Score=71.20  Aligned_cols=38  Identities=26%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..||+||||+|.+|+.+|++|++. ++.+|++||.+...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence            469999999999999999999985 56899999998654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=94.74  E-value=0.016  Score=75.90  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++...+.+.|.+.+.+.| .++.+++|++|..  +.   |++.+| +++|+.||.|+|..|.
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~  208 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA  208 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchH
Confidence            45678889999999998888 6788999999864  32   455555 8999999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=94.71  E-value=0.018  Score=72.94  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             cccEEEECccHHHHHHHHHHh---c-cCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLK---Q-YNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~---~-~~~~~~v~~~~~~~~~   45 (1428)
                      ++|++|||+|+|||++|+.|+   + .  +.+|+|||+.+..
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~--G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLG--GLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTT--TCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhC--CCeEEEEeCcCCC
Confidence            589999999999999999998   4 4  4799999998654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.67  E-value=0.025  Score=67.60  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=33.6

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .|++|||||+||+++|.+|.+.+++.+|+|||+++..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            4999999999999999999998887889999998654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=94.65  E-value=0.023  Score=69.83  Aligned_cols=38  Identities=21%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      +..+||+||||+|++|+.+|++|++  ++++|++||.+..
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~   45 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGRS   45 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCC
Confidence            4457999999999999999999999  4689999998753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=94.64  E-value=0.017  Score=70.27  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      |++|||+|+||+++|++|++.  +++|+|||+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~--G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA--GKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            899999999999999999986  4799999998

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.61  E-value=0.022  Score=71.29  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .|++|||||+||+++|++|.+.+++.+|+|+|+++..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            5899999999999999999998888999999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.58  E-value=0.023  Score=68.76  Aligned_cols=39  Identities=15%  Similarity=0.035  Sum_probs=34.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+|++|||+|+||+.+|.+|.+.+++.+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            458999999999999999999998777999999988654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.56  E-value=0.016  Score=69.85  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             cccEEEECccHHHHHHHHHHhcc-CCCCeEEEEccCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQY-NPKLNVLLLELSS   43 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~-~~~~~v~~~~~~~   43 (1428)
                      +.|++|||||+||+++|.+|.+. .++.+|+|||+++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            57999999999999999999882 3468999999886

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.49  E-value=0.029  Score=67.79  Aligned_cols=37  Identities=19%  Similarity=0.079  Sum_probs=33.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+|++|||||+||+++|++|.+.+  .+|+|+|+.+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence            4689999999999999999999975  689999998765

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=94.43  E-value=0.024  Score=70.85  Aligned_cols=38  Identities=32%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||+||||+|+||+.+|.+|++. ++++|++||.+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCcc
Confidence            469999999999999999999984 46899999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=94.41  E-value=0.026  Score=71.08  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      ...||++|||||+||+++|.+|++.+  ++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g--~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYG--AKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCC--CeEEEEecc
Confidence            34699999999999999999999964  799999974

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.40  E-value=0.022  Score=69.66  Aligned_cols=49  Identities=12%  Similarity=0.114  Sum_probs=37.8

Q ss_pred             HHHHHHHHhccCC-eEEecceEEEEeCC-----eEEEcCCcEEEeeEEEecCCCC
Q psy10545        447 LNSYLIRALGINN-FLFNNKTVEIITPT-----SIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       447 l~~~L~~~~~~~~-~~~~~~~v~~i~~~-----~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.+.+.+.+++.| .++.+++|+.+..+     .|++.+|.++.+|.||-|.|..
T Consensus       233 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          233 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence            4556666777778 67888999988643     2677788889999999998865

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.30  E-value=0.021  Score=68.12  Aligned_cols=50  Identities=14%  Similarity=-0.005  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhccCC-eEEecceEEEEeCCeEEEcCCcEEEeeEEEecCCCC
Q psy10545        446 HLNSYLIRALGINN-FLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       446 ~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+.+.+.+.+++.| .++.+++|+.++.+.|++.||+++.+|+||-|-|..
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCC
Confidence            34555666666667 678889999999888999999999999999887744

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=94.20  E-value=0.029  Score=67.44  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=31.6

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .|+|||||+||+++|.+|.+.+++.+|+|||+++
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            5999999999999999999988899999999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.11  E-value=0.018  Score=70.65  Aligned_cols=36  Identities=33%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++|++|||||+||+++|++|.+.   .+|+|+|+++..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCC
Confidence            357999999999999999999986   799999998766

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=94.02  E-value=0.031  Score=68.57  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||+||||+|++|+.+|++|++.  +++|+|||.+...
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCC
Confidence            469999999999999999999994  5899999988644

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=93.98  E-value=0.045  Score=69.58  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=37.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ..+|++|||+|+|||++|++|.+.+  .+|+|+|+++..+.+.+.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~~~  149 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVATF  149 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCCEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccc
Confidence            4589999999999999999999864  7999999998885454444

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.94  E-value=0.039  Score=70.64  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=33.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+|++|||||+||+++|+.|++.+  .+|+|+|+++..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~  426 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDL  426 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence            4589999999999999999999974  799999998766

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.88  E-value=0.036  Score=65.06  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSV  393 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~~  393 (1428)
                      ++|+|+|+.++-.|..|++.|.+|+++|+.+.+                                               
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-----------------------------------------------  178 (367)
T 1xhc_A          146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-----------------------------------------------  178 (367)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-----------------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee-----------------------------------------------
Confidence            568899999999999999999999999987543                                               


Q ss_pred             CCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEeC
Q psy10545        394 KNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP  472 (1428)
Q Consensus       394 ~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~  472 (1428)
                                       .+               ++               ..+.+.+.+.+++.| .++.+++|+.++.
T Consensus       179 -----------------l~---------------~~---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  211 (367)
T 1xhc_A          179 -----------------LG---------------LD---------------EELSNMIKDMLEETGVKFFLNSELLEANE  211 (367)
T ss_dssp             -----------------TT---------------CC---------------HHHHHHHHHHHHHTTEEEECSCCEEEECS
T ss_pred             -----------------cc---------------CC---------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEe
Confidence                             00               00               134556666677778 5788899999986


Q ss_pred             CeEEEcCCcEEEeeEEEecCCCC
Q psy10545        473 TSIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       473 ~~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      +.|++.+|+ +.+|.||.|.|..
T Consensus       212 ~~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          212 EGVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             SEEEETTEE-EECSCEEEECCEE
T ss_pred             eEEEECCCE-EEcCEEEECcCCC
Confidence            678888887 9999999888855

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=93.84  E-value=0.026  Score=68.29  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             cccEEEECccHHHHHHHHHHhc-cCC----CCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQ-YNP----KLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~-~~~----~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|.+|.+ ..+    +.+|+|||+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            5899999999999999999988 644    6899999988655

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.84  E-value=0.048  Score=52.74  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             cEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc
Q psy10545        973 QIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus       973 ~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
                      +++.||+||+|+|+..+. .+.-.+++|..+.++++++.++ +..|+++.|+++|
T Consensus         4 ~~~~Ad~VIvTvP~~vL~-~I~F~P~LP~~k~~Ai~~l~~g-~~~Kv~l~f~~~F   56 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLR-FVKVTPPFSYKKRRAVIETHYD-QATKVLLEFSRRW   56 (130)
T ss_dssp             EEEEESEEEECSCHHHHT-TSEEESCCCHHHHHHHHHCCEE-CEEEEEEEESSCG
T ss_pred             eEEEcCEEEEcCCHHHHh-cCcCCCCCCHHHHHHHHhCCCc-ceeEEEEEECCCC
Confidence            478999999999887655 4544567999999999999998 6789999999994

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=93.63  E-value=0.037  Score=66.59  Aligned_cols=46  Identities=20%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             HHHHHhccCC-eEEecceEEEEeCCeEEEcCCcEEEeeEEEecCCCC
Q psy10545        450 YLIRALGINN-FLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLK  495 (1428)
Q Consensus       450 ~L~~~~~~~~-~~~~~~~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~  495 (1428)
                      .+.+.+++.| .++.+++|+.++...+++.+|+++.+|+||-|-|..
T Consensus       193 ~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          193 PILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             HHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEecee
Confidence            3455555567 588899999999888999999999999999988855

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=93.52  E-value=0.062  Score=69.60  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ..+|++|||+|+|||++|++|.+.+  .+|+|+|.+...+.+.+.|
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~~~~  320 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVATF  320 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCceeee
Confidence            3579999999999999999999865  7999999998885454444

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.51  E-value=0.056  Score=66.24  Aligned_cols=35  Identities=23%  Similarity=0.073  Sum_probs=25.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ..||+||||+|||||++|.+|.+.+  ...+++|...
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~--~~~~~~~~~~   72 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDAL--DPRLNKSASN   72 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHH--CTTTCTTC--
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcC--CCceEEeccc
Confidence            3589999999999999999998864  2334444443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=92.96  E-value=0.067  Score=68.76  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+|++|||||+||+++|..|++.+  .+|+|+|+++..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~  424 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKI  424 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence            3589999999999999999999964  799999998766

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=92.90  E-value=0.044  Score=72.73  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ++|++|||+|+||+++|.+|.+.+  .+|+|||+++..+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCC
Confidence            589999999999999999999864  7999999987664

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=92.77  E-value=0.079  Score=67.54  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+|++|||||+||+++|..|.+.  +.+|+|||+++..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~  408 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEI  408 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence            58999999999999999999986  4799999998766

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=92.52  E-value=0.093  Score=61.87  Aligned_cols=39  Identities=10%  Similarity=0.054  Sum_probs=32.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ......++|||||+||+++|.+|  ..++.+|+|||+++..
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L--~~~~~~itlie~~~~~   44 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAA--LGKCDDITMINSEKYL   44 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHH--TTTCSCEEEECSSSSC
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHH--hCCCCEEEEEECCCCC
Confidence            33467899999999999999999  3467999999998654

>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*

Probab=92.40  E-value=5.5  Score=45.20  Aligned_cols=133  Identities=13%  Similarity=0.074  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---hCCCcc----chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1282 LFEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---IGVKEK----DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~----~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      ..++..|...|+....  -.|++++.+-+++=.|++-.+.+.+   ++-.++    ....++.++|.|+|+.|=+-|+  
T Consensus       139 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~  218 (325)
T 3aqb_B          139 ILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTS  218 (325)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3588999999997532  3588888776666666665555544   332222    2457889999999999877776  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcC-CC-cc------ccc-cccchHH---HHHHH-----HHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEG-LN-KS------NFV-LAENRKK---LFKVV-----TRILDVAEFYYSSSL 1404 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~-~~-~~------~~~-~~~~~~~---~~~~~-----~~~~~~A~~~~~~a~ 1404 (1428)
                               +.|+..|++-+|.=..-+.. -. .+      ++. .+...+.   +.+.+     ...-+.++++.++|+
T Consensus       219 ~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~  298 (325)
T 3aqb_B          219 DEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAK  298 (325)
T ss_dssp             CHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     56888899999874432211 00 00      111 1111122   22222     233566889999999


Q ss_pred             HhhcCCCccc
Q psy10545       1405 VKLNTLPLRS 1414 (1428)
Q Consensus      1405 ~~~~~lp~~~ 1414 (1428)
                      ..+..+|...
T Consensus       299 ~~L~~lp~~~  308 (325)
T 3aqb_B          299 YHLSQLQDSN  308 (325)
T ss_dssp             HHHHTSCCCH
T ss_pred             HHHHhCCCcH
Confidence            9999999754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=92.02  E-value=0.097  Score=69.94  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +.+|++|||||+||+++|.+|++.+.. +|+|+|+.+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~-~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYS-DITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCC-cEEEEeCCCCC
Confidence            468999999999999999999997632 79999987655

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=91.99  E-value=0.087  Score=66.32  Aligned_cols=38  Identities=16%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             cccEEEECccHHHHHHHHHHhccC------CCCeEEEEccCC-CC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYN------PKLNVLLLELSS-SV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~------~~~~v~~~~~~~-~~   45 (1428)
                      .++++|||||+|||++|++|.+.+      ++.+|+|+|.++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            479999999999999999998865      227999999998 66

>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}

Probab=91.37  E-value=1  Score=50.75  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             HHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---hCC-Ccc----chHHHHHHHHHHHHHHHHHhcchhhh
Q psy10545       1284 EHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---IGV-KEK----DTLNCARNLGIAFQLTNISRDVIDDF 1354 (1428)
Q Consensus      1284 ~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~-~~~----~~~~~a~~~g~a~q~~nilrd~~~d~ 1354 (1428)
                      .|+.|...|+... ...|++++..-.++=.|++-.+.+.+   ++- .++    ....++.++|.|+|+.+=+-|+..|-
T Consensus       152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~  231 (317)
T 4f62_A          152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT  231 (317)
T ss_dssp             THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence            5788999998753 23588888776655555544444433   332 232    24678899999999999988885432


Q ss_pred             c-CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy10545       1355 Y-VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLR 1413 (1428)
Q Consensus      1355 ~-~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 1413 (1428)
                      + .|+-            .-+|+.++..+--+.-.+..--+.|+++.++|++.+..+|..
T Consensus       232 ~~~GK~------------~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~  279 (317)
T 4f62_A          232 ETLGKT------------QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK  279 (317)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HhhCCC------------cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            2 2220            012333333222223355666778889999999999999864

>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}

Probab=91.30  E-value=1.5  Score=50.10  Aligned_cols=132  Identities=17%  Similarity=0.100  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhccCC--CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1282 LFEHLDGFEMDVMER--TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~--~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      ..+++.|...|+...  .-.|++++..-+++=.|++-.+.+.+   + |.++.   ....++.++|.|+|+.|=+-|+  
T Consensus       148 ~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~  227 (341)
T 3mzv_A          148 SAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGG  227 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            457889999998643  24588888776666556555554443   3 33322   2467889999999999988887  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCcc-----cccc-----ccchHHHHHH------HHHHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNKS-----NFVL-----AENRKKLFKV------VTRILDVAEFYYSSSLV 1405 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~------~~~~~~~A~~~~~~a~~ 1405 (1428)
                               +.|+..|++-+|.=..-+..-..+     ++..     ......+.+.      +..--+.|+++.++|+.
T Consensus       228 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~  307 (341)
T 3mzv_A          228 KSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARK  307 (341)
T ss_dssp             --------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                     468889999999755433221100     0110     1111222222      34456778999999999


Q ss_pred             hhcCCCcc
Q psy10545       1406 KLNTLPLR 1413 (1428)
Q Consensus      1406 ~~~~lp~~ 1413 (1428)
                      .+..+|..
T Consensus       308 ~L~~lp~~  315 (341)
T 3mzv_A          308 ALAKLPDH  315 (341)
T ss_dssp             HHTTSCCC
T ss_pred             HHHhCCCC
Confidence            99999864

>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}

Probab=91.13  E-value=1.3  Score=50.00  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---hCC-Cccc----hHHHHHHHHHHHHHHHHHhcchh-
Q psy10545       1283 FEHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---IGV-KEKD----TLNCARNLGIAFQLTNISRDVID- 1352 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~-~~~~----~~~~a~~~g~a~q~~nilrd~~~- 1352 (1428)
                      ..|+.|...|+... .-.|++++..-.++=.|++-.+.+.+   ++- .+++    ...++.++|.|+|+.+=+-|+.. 
T Consensus       158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d  237 (324)
T 3ts7_A          158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD  237 (324)
T ss_dssp             TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            36788988998753 24588888887766666665555544   332 2322    45788999999999998888744 


Q ss_pred             ----------hhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1353 ----------DFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1353 ----------d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                                |+..|++-+|.                      .-.+..--+.|++++++|++.+..+|...
T Consensus       238 ~~~~GK~~g~Dl~egK~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~~~~  287 (324)
T 3ts7_A          238 TQTLGKTRGKDRDHNKPNYPA----------------------LLGLSGAKEKAEEMHEAALESLAGFGPEA  287 (324)
T ss_dssp             ---------------CCCHHH----------------------HHCHHHHHHHHHHHHHHHHHTTTTCCGGG
T ss_pred             HHHhCCCccchhhcCCccHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCCccH
Confidence                      44455555553                      22455556788999999999999999763

>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}

Probab=91.06  E-value=1.6  Score=49.67  Aligned_cols=134  Identities=15%  Similarity=0.099  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---hCCCcc----chHHHHHHHHHHHHHHHHHhcc-
Q psy10545       1281 LLFEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---IGVKEK----DTLNCARNLGIAFQLTNISRDV- 1350 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~----~~~~~a~~~g~a~q~~nilrd~- 1350 (1428)
                      ...+++.|...|+....  -.|++++..-+++=.|++-.+.+.+   ++-.++    ....++.++|.|+|+.|=+-|+ 
T Consensus       141 ~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~  220 (334)
T 3rmg_A          141 LGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF  220 (334)
T ss_dssp             HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            34678899999987543  3588888776665555555544433   332232    2467889999999999988887 


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCc--ccc---c-cc----cchHHHHH------HHHHHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNK--SNF---V-LA----ENRKKLFK------VVTRILDVAEFYYSSSLV 1405 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~--~~~---~-~~----~~~~~~~~------~~~~~~~~A~~~~~~a~~ 1405 (1428)
                               +.|+..|++-+|.=..-+..-..  ..+   . .+    +....+.+      .+..--+.|+++.++|+.
T Consensus       221 ~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~  300 (334)
T 3rmg_A          221 DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFD  300 (334)
T ss_dssp             CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence                     37888999999975533322110  001   0 01    11112222      234445678899999999


Q ss_pred             hhcCCCccc
Q psy10545       1406 KLNTLPLRS 1414 (1428)
Q Consensus      1406 ~~~~lp~~~ 1414 (1428)
                      .+..+|...
T Consensus       301 ~L~~lp~~~  309 (334)
T 3rmg_A          301 LLAALPDSN  309 (334)
T ss_dssp             HHTTSCCCH
T ss_pred             HHHhCCCcH
Confidence            999998643

>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A

Probab=90.94  E-value=4.6  Score=46.63  Aligned_cols=136  Identities=10%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             HHHHHHHHhhccCCC-------CCCHHHHHHHHHHHhHHH-HHHHH---Hhh-C-CCcc---chHHHHHHHHHHHHHHHH
Q psy10545       1283 FEHLDGFEMDVMERT-------YITLDETLGYCYHVAGTI-GLIIA---HLI-G-VKEK---DTLNCARNLGIAFQLTNI 1346 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~~-------~~t~~~l~~Y~~~vag~v-g~~~~---~~~-~-~~~~---~~~~~a~~~g~a~q~~ni 1346 (1428)
                      .++..|...|+....       -.|++++..=+++=.|.+ -.+.+   .++ | .++.   ....++.++|.|+|+.+=
T Consensus       179 ~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD  258 (367)
T 1uby_A          179 YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDD  258 (367)
T ss_dssp             HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999986432       347888776555544443 22222   223 4 2322   246788999999999998


Q ss_pred             Hhcch----------hhhcCCceeecHHHHHhcCCCccc---c---ccc---cchHHHHHHHH------HHHHHHHHHHH
Q psy10545       1347 SRDVI----------DDFYVGRCYLPLDWLRNEGLNKSN---F---VLA---ENRKKLFKVVT------RILDVAEFYYS 1401 (1428)
Q Consensus      1347 lrd~~----------~d~~~gR~ylP~~~~~~~~~~~~~---~---~~~---~~~~~~~~~~~------~~~~~A~~~~~ 1401 (1428)
                      +-|+-          .|+..|++-||.=..-+.. ++++   +   ...   .....+++++.      ..-..++++++
T Consensus       259 ~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~  337 (367)
T 1uby_A          259 YLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYR  337 (367)
T ss_dssp             HHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            88874          5788899999975433221 2211   1   111   11122222222      11245888999


Q ss_pred             HHHHhhcCCCcc-chHHHH
Q psy10545       1402 SSLVKLNTLPLR-STLAIV 1419 (1428)
Q Consensus      1402 ~a~~~~~~lp~~-~~~a~~ 1419 (1428)
                      +|+..+..+|.. .+-++.
T Consensus       338 ~A~~~L~~lp~~~~k~~L~  356 (367)
T 1uby_A          338 RLQELIEKHSNRLPKEIFL  356 (367)
T ss_dssp             HHHHHHHHHCSSSCTHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHH
Confidence            999999988854 344443

>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}

Probab=90.72  E-value=6.1  Score=44.92  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhccC---C-CCCCHHHHHHHHHHHhHHH-HHHHHHh---hCCCccc--hHHHHHHHHHHHHHHHHHhcc-
Q psy10545       1282 LFEHLDGFEMDVME---R-TYITLDETLGYCYHVAGTI-GLIIAHL---IGVKEKD--TLNCARNLGIAFQLTNISRDV- 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~---~-~~~t~~~l~~Y~~~vag~v-g~~~~~~---~~~~~~~--~~~~a~~~g~a~q~~nilrd~- 1350 (1428)
                      ..+++.|...|+..   . .-.|++++..-+++=.|.+ -.+.+.+   ++-.+++  ...++.++|.|+|+.|=+-|+ 
T Consensus       139 ~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQi~DD~ld~~  218 (330)
T 1wmw_A          139 VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNLE  218 (330)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCccc
Confidence            46889999999864   2 2458888877666655555 4444433   3322222  567899999999999888886 


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCccc---c---cc-ccc---hHH---HHHHH------HHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNKSN---F---VL-AEN---RKK---LFKVV------TRILDVAEFYYSS 1402 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~~~---~---~~-~~~---~~~---~~~~~------~~~~~~A~~~~~~ 1402 (1428)
                               +.|+..|++-+|.=..-+.. ++++   +   .. +..   .+.   +.+.+      ...-+.++++.++
T Consensus       219 ~d~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~  297 (330)
T 1wmw_A          219 GGEAYGKERAGDLYEGKRTLILLRFLEEA-PPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAE  297 (330)
T ss_dssp             CSCCCSSSTTHHHHHTCCCHHHHHHHHHS-CHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCcCchhhCCCCCHHHHHHHHhC-CHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence                     56888899999975433222 1110   1   11 011   122   22222      2233568888899


Q ss_pred             HHHhhc----CCCcc
Q psy10545       1403 SLVKLN----TLPLR 1413 (1428)
Q Consensus      1403 a~~~~~----~lp~~ 1413 (1428)
                      |+..+.    .+|..
T Consensus       298 A~~~L~~~i~~lp~~  312 (330)
T 1wmw_A          298 GLALLEAAFQDLPGK  312 (330)
T ss_dssp             HHHHHHTGGGGCSCH
T ss_pred             HHHHHHHHhhcCCCc
Confidence            999998    88853

>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1

Probab=90.56  E-value=1.5  Score=49.12  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             HHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---hCC-Ccc----chHHHHHHHHHHHHHHHHHhcchhhh
Q psy10545       1284 EHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---IGV-KEK----DTLNCARNLGIAFQLTNISRDVIDDF 1354 (1428)
Q Consensus      1284 ~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~-~~~----~~~~~a~~~g~a~q~~nilrd~~~d~ 1354 (1428)
                      .|+.|...|+... ...|++++..-+++=.|.+-.+.+.+   ++- .++    ....++.++|.|+|+.|=+-|+..|-
T Consensus       159 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~  238 (302)
T 3p8r_A          159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT  238 (302)
T ss_dssp             THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            5788988998754 34588888776655555554444443   332 122    24678999999999999888875442


Q ss_pred             c-CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1355 Y-VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1355 ~-~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                      + .|+-            .-+|+.++..+--+.-.+..--+.|+++.++|++.+..+|...
T Consensus       239 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~  287 (302)
T 3p8r_A          239 ETLGKP------------QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNT  287 (302)
T ss_dssp             --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCT
T ss_pred             HHhCCC------------cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccH
Confidence            2 2220            0123333333333333566667889999999999999999753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=90.51  E-value=0.17  Score=61.78  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ....|+|||||.||+++|.+|.+.  +.+|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~--~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTK--KYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTT--TCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhC--CCcEEEECCCC
Confidence            345699999999999999999774  57999999873

>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}

Probab=90.51  E-value=2.3  Score=48.52  Aligned_cols=132  Identities=20%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1282 LFEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      ..+|+.|...|+....  -.|++++..-+++=.|++-.+.+.+   + |.++.   ....++.++|.|+|+.+=+-|+  
T Consensus       160 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~  239 (345)
T 3oyr_A          160 SRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGG  239 (345)
T ss_dssp             HHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3578999999987542  3588888876666666665555543   3 33322   2467889999999999988887  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCcc-c----cc-----cccchHHHHHH------HHHHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNKS-N----FV-----LAENRKKLFKV------VTRILDVAEFYYSSSLV 1405 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~~-~----~~-----~~~~~~~~~~~------~~~~~~~A~~~~~~a~~ 1405 (1428)
                               +.|+..|++-+|.=..-+..-..+ +    +.     ..+....+.+.      +..-.+.|+++.++|++
T Consensus       240 d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~  319 (345)
T 3oyr_A          240 ATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKA  319 (345)
T ss_dssp             -----------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                     368888999999755433321100 0    00     11122233333      34556778999999999


Q ss_pred             hhcCCCcc
Q psy10545       1406 KLNTLPLR 1413 (1428)
Q Consensus      1406 ~~~~lp~~ 1413 (1428)
                      .+..+|..
T Consensus       320 ~L~~lp~~  327 (345)
T 3oyr_A          320 ALAMFPAN  327 (345)
T ss_dssp             TTTTSCSS
T ss_pred             HHHhCCCc
Confidence            99999964

>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...

Probab=90.40  E-value=6.5  Score=45.44  Aligned_cols=131  Identities=11%  Similarity=0.070  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhccCCC---C----CCHHHHHHHHHHHhHHH-HHHHH---HhhCC-Cccc----hHHHHHHHHHHHHHHHH
Q psy10545       1283 FEHLDGFEMDVMERT---Y----ITLDETLGYCYHVAGTI-GLIIA---HLIGV-KEKD----TLNCARNLGIAFQLTNI 1346 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~~---~----~t~~~l~~Y~~~vag~v-g~~~~---~~~~~-~~~~----~~~~a~~~g~a~q~~ni 1346 (1428)
                      .+++.|...|+....   .    .|++++..-+++=.|.+ -.+.+   .+++- .+++    ...++.++|.|+|+.+=
T Consensus       186 ~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DD  265 (374)
T 2qis_A          186 YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDD  265 (374)
T ss_dssp             HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999987532   1    48888887666655555 33322   23332 3332    45788999999999998


Q ss_pred             Hhcch----------hhhcCCceeecHHHHHhcCCCccc---c---ccc---cchHHHHHHHH------HHHHHHHHHHH
Q psy10545       1347 SRDVI----------DDFYVGRCYLPLDWLRNEGLNKSN---F---VLA---ENRKKLFKVVT------RILDVAEFYYS 1401 (1428)
Q Consensus      1347 lrd~~----------~d~~~gR~ylP~~~~~~~~~~~~~---~---~~~---~~~~~~~~~~~------~~~~~A~~~~~ 1401 (1428)
                      +-|+-          .|+..|++-+|.=..-+.. ++++   +   ...   .....+++++.      .....++++++
T Consensus       266 iLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~  344 (374)
T 2qis_A          266 YLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA-TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYS  344 (374)
T ss_dssp             HHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHccCChhhcCCchhHHHcCCccHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence            88873          5788899999975432221 1110   1   111   11222333332      12444888999


Q ss_pred             HHHHhhcCCCccc
Q psy10545       1402 SSLVKLNTLPLRS 1414 (1428)
Q Consensus      1402 ~a~~~~~~lp~~~ 1414 (1428)
                      .|+..+..+|...
T Consensus       345 ~a~~~L~~lp~~~  357 (374)
T 2qis_A          345 HIMALIEQYAAPL  357 (374)
T ss_dssp             HHHHHHHHHCTTS
T ss_pred             HHHHHHHhCCCch
Confidence            9999999998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.35  E-value=0.17  Score=49.58  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999853

>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*

Probab=90.28  E-value=1.7  Score=48.62  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             HHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc----chHHHHHHHHHHHHHHHHHhcchhhh
Q psy10545       1284 EHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK----DTLNCARNLGIAFQLTNISRDVIDDF 1354 (1428)
Q Consensus      1284 ~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~----~~~~~a~~~g~a~q~~nilrd~~~d~ 1354 (1428)
                      .|+.|...|+... ...|++++..-+++=.|++-.+.+.+   + |..++    ....++.++|.|+|+.|=+-|+-.|-
T Consensus       153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~  232 (304)
T 3lsn_A          153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT  232 (304)
T ss_dssp             THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence            4788999998753 23688888877665555555544433   3 33133    24678899999999999888885442


Q ss_pred             c-CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy10545       1355 Y-VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLR 1413 (1428)
Q Consensus      1355 ~-~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 1413 (1428)
                      + .|+-            .-+|+.++..+--+.-.+..--+.|++++++|.+.+..+|..
T Consensus       233 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~  280 (304)
T 3lsn_A          233 ATLGKR------------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA  280 (304)
T ss_dssp             HHC------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHhCCC------------cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            1 2221            012333333322223345556788899999999999999974

>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1

Probab=90.24  E-value=3.4  Score=46.33  Aligned_cols=134  Identities=13%  Similarity=0.094  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhccC--C-CCCCHHHHHHHHHHHhHHHHHHHHHh---hCCCccchHHHHHHHHHHHHHHHHHhcc----
Q psy10545       1281 LLFEHLDGFEMDVME--R-TYITLDETLGYCYHVAGTIGLIIAHL---IGVKEKDTLNCARNLGIAFQLTNISRDV---- 1350 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~--~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~~~~~~a~~~g~a~q~~nilrd~---- 1350 (1428)
                      .+.+|..|...|+..  . ...|++++..-+++=.|++-.+.+.+   ++-.++....++.++|.|+|+.|=+-|+    
T Consensus       119 ~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~  198 (301)
T 2q80_A          119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKE  198 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHhhhcCCh
Confidence            346788999999863  1 24588888776665555444444433   3334456789999999999999887776    


Q ss_pred             -------hhhhcCCceeecHHHHHhcCCCccccc----cccchHHHHH----------HHHHHHHHHHHHHHHHHHhhcC
Q psy10545       1351 -------IDDFYVGRCYLPLDWLRNEGLNKSNFV----LAENRKKLFK----------VVTRILDVAEFYYSSSLVKLNT 1409 (1428)
Q Consensus      1351 -------~~d~~~gR~ylP~~~~~~~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~A~~~~~~a~~~~~~ 1409 (1428)
                             +.|+..|++-+|.=..-+..-....+.    .....+.+.+          ++...-+.|+++.++|++.+..
T Consensus       199 ~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~  278 (301)
T 2q80_A          199 YSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDA  278 (301)
T ss_dssp             -----CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHc
Confidence                   467888999999865444321111111    1111222222          1224456688899999999999


Q ss_pred             CCccc
Q psy10545       1410 LPLRS 1414 (1428)
Q Consensus      1410 lp~~~ 1414 (1428)
                      +|...
T Consensus       279 l~~~~  283 (301)
T 2q80_A          279 RGGNP  283 (301)
T ss_dssp             TTCCH
T ss_pred             CCCCH
Confidence            98654

>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*

Probab=90.15  E-value=8  Score=44.56  Aligned_cols=132  Identities=13%  Similarity=0.026  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhhccCC--------------C----CCCHHHHHHHHHHHhHHH-HHHHH---HhhCC-Ccc----chHHHH
Q psy10545       1282 LFEHLDGFEMDVMER--------------T----YITLDETLGYCYHVAGTI-GLIIA---HLIGV-KEK----DTLNCA 1334 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~--------------~----~~t~~~l~~Y~~~vag~v-g~~~~---~~~~~-~~~----~~~~~a 1334 (1428)
                      ..+++.|...|+...              .    -.|++++..-+++=.|.+ -.+.+   .+++- .++    ....++
T Consensus       160 ~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g  239 (362)
T 1yhl_A          160 DYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVA  239 (362)
T ss_dssp             HHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            357899999999765              2    247888877666555554 33333   23332 222    246788


Q ss_pred             HHHHHHHHHHHHHhcch----------hhhcCCceeecHHHHHhcCCCccc---c---cccc---chHHHHHHHH-----
Q psy10545       1335 RNLGIAFQLTNISRDVI----------DDFYVGRCYLPLDWLRNEGLNKSN---F---VLAE---NRKKLFKVVT----- 1390 (1428)
Q Consensus      1335 ~~~g~a~q~~nilrd~~----------~d~~~gR~ylP~~~~~~~~~~~~~---~---~~~~---~~~~~~~~~~----- 1390 (1428)
                      .++|.|+|+.+=+-|+.          .|+..|++-+|.=..-+.. ++++   +   ....   ....+.+++.     
T Consensus       240 ~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~  318 (362)
T 1yhl_A          240 HLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA-NAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQ  318 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999888874          6888999999975433222 2111   1   1111   1122333322     


Q ss_pred             -HHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1391 -RILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1391 -~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                       ...+.+++++++|+..+..+|...
T Consensus       319 ~~~~~~~~~~~~~A~~~L~~lp~~~  343 (362)
T 1yhl_A          319 ADFAAYEAEVVREVESLIEQLKVKS  343 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCc
Confidence             234668899999999999998653

>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}

Probab=90.07  E-value=1.6  Score=49.34  Aligned_cols=110  Identities=15%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcch--
Q psy10545       1283 FEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDVI-- 1351 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~~-- 1351 (1428)
                      ..|+.|...|+....  -.|++++..-+++=.|.+-.+.+.+   + |.+++   ....++.++|.|+|+.|=+.|+.  
T Consensus       180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd  259 (324)
T 3uca_A          180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN  259 (324)
T ss_dssp             TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            357889999987543  4588888776544444444444433   3 33322   24678899999999999888874  


Q ss_pred             ---------hhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1352 ---------DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1352 ---------~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                               .|+..|++-+|.=                      -.+.+--+.|+++.++|++.+..+|...
T Consensus       260 ~~~~GK~~g~Dl~egK~T~p~l----------------------~al~~a~~~a~~~~~~A~~~L~~l~~~~  309 (324)
T 3uca_A          260 AKDLGKNVHKDQESNKNNYITI----------------------FGLEECKKKCVNITEECIEILSSIKGNT  309 (324)
T ss_dssp             -----------------CHHHH----------------------HCHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHhCCCcchHhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence                     4555555555542                      2344556778889999999999998754

>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}

Probab=90.00  E-value=1.8  Score=48.86  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCccchHHHHHHHHHHHHHHHHHhcc----
Q psy10545       1281 LLFEHLDGFEMDVMER--TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEKDTLNCARNLGIAFQLTNISRDV---- 1350 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~~--~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~~~~~~a~~~g~a~q~~nilrd~---- 1350 (1428)
                      ...+++.|...|+...  .-.|++++..-+++=.|++-.+.+.+   + |.+......++.++|.|+|+.|=+-|+    
T Consensus       130 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~  209 (315)
T 3tc1_A          130 AVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDITQDA  209 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            3567889999998743  24588888765555555554444433   2 334334567999999999999988887    


Q ss_pred             -------hhhhcCCceeecHHHHHhcCCCcc------ccccccchHH---HHH------HHHHHHHHHHHHHHHHHHhhc
Q psy10545       1351 -------IDDFYVGRCYLPLDWLRNEGLNKS------NFVLAENRKK---LFK------VVTRILDVAEFYYSSSLVKLN 1408 (1428)
Q Consensus      1351 -------~~d~~~gR~ylP~~~~~~~~~~~~------~~~~~~~~~~---~~~------~~~~~~~~A~~~~~~a~~~~~ 1408 (1428)
                             +.|+..|++-+|.=..-+.. +++      ++......+.   +.+      ++..-.+.|+++.++|++.+.
T Consensus       210 ~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~  288 (315)
T 3tc1_A          210 KTLGKPNFSDFKEGKTTLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIK  288 (315)
T ss_dssp             TCCCCCCCCTGGGTCCCHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCChhhHHHcCChhHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence                   56888899999975544332 211      1111112222   222      233445568899999999999


Q ss_pred             CCCccc
Q psy10545       1409 TLPLRS 1414 (1428)
Q Consensus      1409 ~lp~~~ 1414 (1428)
                      .+|...
T Consensus       289 ~lp~s~  294 (315)
T 3tc1_A          289 GENNLI  294 (315)
T ss_dssp             TTCCHH
T ss_pred             hCCCcH
Confidence            998754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.93  E-value=0.22  Score=59.98  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=32.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ...+|.|||.|.+|+++|..|+++|++|++.|.+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            45789999999999999999999999999999865

>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A

Probab=89.91  E-value=0.65  Score=51.91  Aligned_cols=110  Identities=18%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhccCC---CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCccchHHHHHHHHHHHHHHHHHhcch----
Q psy10545       1283 FEHLDGFEMDVMER---TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEKDTLNCARNLGIAFQLTNISRDVI---- 1351 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~---~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~~~~~~a~~~g~a~q~~nilrd~~---- 1351 (1428)
                      ..|+.|...|+...   .-.|++++..-+++=.|.+-.+.+.+   + |.+......++.++|.|+|+.|=+-|+.    
T Consensus       147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~  226 (297)
T 3m0g_A          147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE  226 (297)
T ss_dssp             TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred             hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            36888998998754   34588888876666555554444433   2 4444456789999999999998777764    


Q ss_pred             -------hhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1352 -------DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1352 -------~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                             .|+..|++-+|.=.                      .+..--+.|+++.++|++.+..+|...
T Consensus       227 ~~GK~~g~Dl~~gK~T~p~l~----------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~  274 (297)
T 3m0g_A          227 AAGKRLGKDAEAHKATFVSLL----------------------GLAGAKSRAADLVAEAEAALAPYGEAA  274 (297)
T ss_dssp             --------------CCHHHHH----------------------CSSHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred             HhCCCccchhhcCCccHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence                   45555665555432                      233345668888888888888888765

>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}

Probab=89.82  E-value=1.4  Score=49.70  Aligned_cols=109  Identities=12%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             HHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh--hCC--Ccc----chHHHHHHHHHHHHHHHHHhcchh-
Q psy10545       1284 EHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL--IGV--KEK----DTLNCARNLGIAFQLTNISRDVID- 1352 (1428)
Q Consensus      1284 ~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~--~~~--~~~----~~~~~a~~~g~a~q~~nilrd~~~- 1352 (1428)
                      .|+.|...|+....  -.|++++..-.++=.|.+-.+.+.+  ++-  .++    ....++.++|.|+|+.|=+.|+.. 
T Consensus       159 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd  238 (313)
T 3lom_A          159 GMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAP  238 (313)
T ss_dssp             THHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            57889889987542  4588888876655445444443333  332  233    245788999999999998888743 


Q ss_pred             ----------hhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1353 ----------DFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1353 ----------d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                                |+..|++-+|.=                      -.+..--+.|+++.++|++.+..+|...
T Consensus       239 ~~~~GK~~g~Dl~~gK~T~p~l----------------------~~l~~a~~~a~~~~~~A~~~L~~l~~~~  288 (313)
T 3lom_A          239 TQILGKGRSSDQANQKTTFATL----------------------FNKQQLEEEIAVHYQIAMDSLRLFGSKA  288 (313)
T ss_dssp             ---------------CCCHHHH----------------------SCHHHHHHHHHHHHHHHHHTTTTTGGGG
T ss_pred             HHhhCCCCcchhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCccH
Confidence                      555555555542                      2344556788999999999999998753

>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*

Probab=89.61  E-value=6.3  Score=45.90  Aligned_cols=186  Identities=11%  Similarity=-0.007  Sum_probs=105.9

Q ss_pred             hhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHcC--
Q psy10545       1203 VIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGF----KMKEPAFLALQKIISIHS-- 1276 (1428)
Q Consensus      1203 ~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~p~~~~l~~~~~~~~-- 1276 (1428)
                      +...-++-+..|.-.+||+.|+.......          ..++.+.+.+..++.+.    ....|+..+|.++.++..  
T Consensus       104 erL~l~a~~~~w~f~~DD~~D~~~~g~~~----------~~~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~~~~~~  173 (382)
T 3kb9_A          104 EVLQAIADYSAWFFVWDDRHDRDIVHGRA----------GAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAF  173 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCH----------HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHcc
Confidence            34446677788888999999973211111          12223333344444442    245799999999888763  


Q ss_pred             CCHHHHH-------HHHHHHHhhcc---CCCCCCHHHHHHHHHHHhHHHHHHHHH--hhCCCcc-------chHHHHHHH
Q psy10545       1277 FPVHLLF-------EHLDGFEMDVM---ERTYITLDETLGYCYHVAGTIGLIIAH--LIGVKEK-------DTLNCARNL 1337 (1428)
Q Consensus      1277 l~~~~~~-------~li~~~~~dl~---~~~~~t~~~l~~Y~~~vag~vg~~~~~--~~~~~~~-------~~~~~a~~~ 1337 (1428)
                      .++.+..       ++++++.....   ...+.|++|+..+...+.|.--.+.+-  .+|..-+       ....+-+..
T Consensus       174 ~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~  253 (382)
T 3kb9_A          174 LPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLS  253 (382)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHH
Confidence            4555444       44455544432   345789999998887777753333222  2343211       123345556


Q ss_pred             HHHHHHHHHHhcchhhhcCCce-eecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10545       1338 GIAFQLTNISRDVIDDFYVGRC-YLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKL 1407 (1428)
Q Consensus      1338 g~a~q~~nilrd~~~d~~~gR~-ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 1407 (1428)
                      +...-|+|=|-......+.|-+ =+-.-.+.++|++.+         .+.+.+.++++.+.+.+.++..-+
T Consensus       254 ~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~e---------eA~~~v~~~i~~~~k~~~~~~~~L  315 (382)
T 3kb9_A          254 QEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLE---------EAIGEVRRRVEECITEFLAVERDA  315 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677766666666777754 233345677888754         344455556666655555554444

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.52  E-value=0.22  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ..+|+|||+|..|...|..|.+.|++|++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.44  E-value=0.22  Score=47.15  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=30.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhCC-CeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAG-ISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G-~~V~VlEa~~  744 (1428)
                      +.+|+|+|+|..|...+..|.+.| ++|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            467999999999999999999999 9999999853

>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*

Probab=89.39  E-value=1.7  Score=49.80  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1281 LLFEHLDGFEMDVMERT-YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~~~-~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      .+.+|+.|...|+.... ..|++++..-+++=.|.+-.+.+.+   + |.+++   ....++.++|.|+|+.|=+-|+  
T Consensus       168 ~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~  247 (360)
T 3lmd_A          168 TFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFS  247 (360)
T ss_dssp             HHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34678899999987532 2567777665555555555544433   3 33322   2467889999999999988777  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCcc-----cccc-cc-chHHHHH---------HHHHHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNKS-----NFVL-AE-NRKKLFK---------VVTRILDVAEFYYSSSLV 1405 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~~-----~~~~-~~-~~~~~~~---------~~~~~~~~A~~~~~~a~~ 1405 (1428)
                               +.|+..|++-+|.=..-+.. +++     ++.. +. ..+.+.+         .+..--+.|+++.++|+.
T Consensus       248 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~  326 (360)
T 3lmd_A          248 ETHESGKTPGTDLREGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA  326 (360)
T ss_dssp             --------CCHHHHHTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhCCCchhHHhcCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence                     46788899999976554431 111     0111 11 1122222         234455678899999999


Q ss_pred             hhcCCCcc
Q psy10545       1406 KLNTLPLR 1413 (1428)
Q Consensus      1406 ~~~~lp~~ 1413 (1428)
                      .+..+|..
T Consensus       327 ~L~~lp~~  334 (360)
T 3lmd_A          327 ELDRLPDS  334 (360)
T ss_dssp             HHTTSCCS
T ss_pred             HHHhCCCc
Confidence            99999964

>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*

Probab=89.36  E-value=4.8  Score=46.62  Aligned_cols=138  Identities=16%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhccCC--CCCCHHHHHHHHHHHhHHH-HHHHH---Hhh-CCCcc---chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1283 FEHLDGFEMDVMER--TYITLDETLGYCYHVAGTI-GLIIA---HLI-GVKEK---DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~--~~~t~~~l~~Y~~~vag~v-g~~~~---~~~-~~~~~---~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      .+++.|...|+...  .-.|++++..-+++=.|.+ -.+.+   .++ |.++.   ....+..++|.|+|+.+=+-|+  
T Consensus       185 ~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~g  264 (380)
T 3lk5_A          185 TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFG  264 (380)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            46778888888642  3348888876554444443 22222   233 33322   2467889999999999887776  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCC--Ccc------cccc----ccchHHHHHH------HHHHHHHHHHHHHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGL--NKS------NFVL----AENRKKLFKV------VTRILDVAEFYYSSS 1403 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~--~~~------~~~~----~~~~~~~~~~------~~~~~~~A~~~~~~a 1403 (1428)
                               +.|+..|++-+|.=..-+..-  +++      ++..    .+....+++.      +....+.++++.++|
T Consensus       265 d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A  344 (380)
T 3lk5_A          265 DPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESG  344 (380)
T ss_dssp             CHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence                     568889999998643322110  000      0111    1111223322      334556789999999


Q ss_pred             HHhhcCCCc--cchHHHHH
Q psy10545       1404 LVKLNTLPL--RSTLAIVT 1420 (1428)
Q Consensus      1404 ~~~~~~lp~--~~~~a~~~ 1420 (1428)
                      +..+..+|.  .++-++..
T Consensus       345 ~~~L~~lp~~~~~r~~L~~  363 (380)
T 3lk5_A          345 LAHLDDVDIPDEVRAQLRA  363 (380)
T ss_dssp             HHHGGGSCCCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHH
Confidence            999999984  34544443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=89.31  E-value=0.21  Score=49.27  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +..|+|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.27  E-value=0.23  Score=49.81  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      .+..++|+|+|-.|...|..|.+.|++|+++|++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            4567999999999999999999999999999986

>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*

Probab=89.14  E-value=2  Score=49.33  Aligned_cols=132  Identities=14%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhccCC------------C--CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHH
Q psy10545       1282 LFEHLDGFEMDVMER------------T--YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIA 1340 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~------------~--~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a 1340 (1428)
                      ..+++.|...|+...            .  -.|++++..-+++=.|.+-.+.+.+   + |.++.   ....++.++|.|
T Consensus       141 ~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a  220 (358)
T 4dhd_A          141 IKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVA  220 (358)
T ss_dssp             HHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            357889999998754            1  3488888776666666655554443   2 33322   246788999999


Q ss_pred             HHHHHHHhcc-----------hhhhcCCce-eecHHHHHhcCCCccc---c---c-ccc-chHH---HHHH------HHH
Q psy10545       1341 FQLTNISRDV-----------IDDFYVGRC-YLPLDWLRNEGLNKSN---F---V-LAE-NRKK---LFKV------VTR 1391 (1428)
Q Consensus      1341 ~q~~nilrd~-----------~~d~~~gR~-ylP~~~~~~~~~~~~~---~---~-~~~-~~~~---~~~~------~~~ 1391 (1428)
                      +|+.|=+-|+           +.|+..|++ -+|.=..-+.. ++++   +   . .+. ..+.   +.+.      +..
T Consensus       221 FQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~  299 (358)
T 4dhd_A          221 FQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVALLDSVGAREE  299 (358)
T ss_dssp             HHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHH
Confidence            9999877776           568888999 88875443322 1110   1   0 011 1122   2222      223


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccc
Q psy10545       1392 ILDVAEFYYSSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1392 ~~~~A~~~~~~a~~~~~~lp~~~ 1414 (1428)
                      --+.|+++.++|++.+..+|...
T Consensus       300 a~~~a~~~~~~A~~~L~~lp~~~  322 (358)
T 4dhd_A          300 ALRLAARYREEAERHLAKIPNNG  322 (358)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCH
Confidence            46778999999999999999554

>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}

Probab=89.06  E-value=2.1  Score=49.16  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcc
Q psy10545       1280 HLLFEHLDGFEMDVMER--TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDV 1350 (1428)
Q Consensus      1280 ~~~~~li~~~~~dl~~~--~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~ 1350 (1428)
                      +.+.+++.|...|+...  .-.|++++..-+++=.|.+-.+.+.+   + |.++.   ....++.++|.|+|+.+=+-|+
T Consensus       150 ~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~  229 (352)
T 3nf2_A          150 KASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGI  229 (352)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34578899999998643  24588888776666556555555443   3 33322   2467889999999999887776


Q ss_pred             -----------hhhhcCCceeecHHHHHhcCCCcc--cc---ccc---------cchHHH---HH------HHHHHHHHH
Q psy10545       1351 -----------IDDFYVGRCYLPLDWLRNEGLNKS--NF---VLA---------ENRKKL---FK------VVTRILDVA 1396 (1428)
Q Consensus      1351 -----------~~d~~~gR~ylP~~~~~~~~~~~~--~~---~~~---------~~~~~~---~~------~~~~~~~~A 1396 (1428)
                                 +.|+..|++-+|.=..-+.+ +++  .+   ...         ...+.+   .+      .+..-.+.|
T Consensus       230 ~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a  308 (352)
T 3nf2_A          230 WGDPDATGKQTWSDLRQRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEA  308 (352)
T ss_dssp             HCCHHHHSSCTTHHHHTTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCChhhhCCCcCcccccCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHH
Confidence                       57888999999975544432 111  11   111         011222   22      233445668


Q ss_pred             HHHHHHHHHhhcCCCc--cchHHHH
Q psy10545       1397 EFYYSSSLVKLNTLPL--RSTLAIV 1419 (1428)
Q Consensus      1397 ~~~~~~a~~~~~~lp~--~~~~a~~ 1419 (1428)
                      +++.++|+..+..+|.  .++-++.
T Consensus       309 ~~~~~~A~~~L~~lp~~~~~r~~L~  333 (352)
T 3nf2_A          309 RRQHTIAIEALDAVDMPDRVRDRFT  333 (352)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            9999999999999986  3444443

>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A

Probab=88.61  E-value=2.8  Score=47.73  Aligned_cols=131  Identities=20%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHhHHHHHHHHHh---hCCCccc----hHHHHHHHHHHHHHHHHHhcc-
Q psy10545       1281 LLFEHLDGFEMDVMER--TYITLDETLGYCYHVAGTIGLIIAHL---IGVKEKD----TLNCARNLGIAFQLTNISRDV- 1350 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~~--~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~~----~~~~a~~~g~a~q~~nilrd~- 1350 (1428)
                      .+.+|+.|...|+...  .-.|++++.+-+++=.|++-.+.+.+   ++-.+++    ...++.++|.|+|+.|=+-|+ 
T Consensus       151 ~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~  230 (334)
T 3pko_A          151 AMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYA  230 (334)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3567888988888653  24577777665555555554444433   3322322    456888999999999977776 


Q ss_pred             ----------hhhhcCCceeecHHHHHhcCCCcccc---c------cccchHHHHHHH------HHHHHHHHHHHHHHHH
Q psy10545       1351 ----------IDDFYVGRCYLPLDWLRNEGLNKSNF---V------LAENRKKLFKVV------TRILDVAEFYYSSSLV 1405 (1428)
Q Consensus      1351 ----------~~d~~~gR~ylP~~~~~~~~~~~~~~---~------~~~~~~~~~~~~------~~~~~~A~~~~~~a~~ 1405 (1428)
                                +.|+..|++-+|.=..-+.. + +++   .      .++....+.+.+      ..-.+.|++++++|+.
T Consensus       231 ~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~-~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~  308 (334)
T 3pko_A          231 GDPKRTQKPVLEDLRSGVYSLPLLLSLSHA-P-RDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALT  308 (334)
T ss_dssp             SCTTSCCHHHHHHHHTTCCCHHHHHHGGGS-H-HHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhcCCCCCCccccCchhHHHHHHHHhC-c-HHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence                      46888999999975543321 0 111   1      011112222222      2345678999999999


Q ss_pred             hhcCCCcc
Q psy10545       1406 KLNTLPLR 1413 (1428)
Q Consensus      1406 ~~~~lp~~ 1413 (1428)
                      .+..+|..
T Consensus       309 ~L~~lp~~  316 (334)
T 3pko_A          309 LIQQLPVG  316 (334)
T ss_dssp             HHTTSCSS
T ss_pred             HHHhCCCc
Confidence            99999974

>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1

Probab=88.53  E-value=2.6  Score=47.16  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcchhhh
Q psy10545       1283 FEHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDVIDDF 1354 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~~~d~ 1354 (1428)
                      ..++.|...|+... ...|++++..-+++=.|++-.+.+.+   + |.+++   ....++.++|.|+|+.|=+-|+..|-
T Consensus       148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~  227 (301)
T 1rtr_A          148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE  227 (301)
T ss_dssp             TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            46788989998643 24588888877776666665554443   2 43332   24678899999999999888885553


Q ss_pred             c-CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10545       1355 Y-VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPL 1412 (1428)
Q Consensus      1355 ~-~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 1412 (1428)
                      + .|+-.            -+|+.++..+--+.-++..--+.|+++.++|++.+..+|.
T Consensus       228 ~~~GK~~------------g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~  274 (301)
T 1rtr_A          228 AKLGKKV------------GSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE  274 (301)
T ss_dssp             CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHhCCCc------------chHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2 23210            1233333333223334555577889999999999999984

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.41  E-value=0.31  Score=48.07  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +..|+|||.|-.|...|..|.+.|++|+++|++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999864

>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A

Probab=87.50  E-value=2.3  Score=47.60  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh----hCCCccchHHHHHHHHHHHHHHHHHhcc------
Q psy10545       1282 LFEHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL----IGVKEKDTLNCARNLGIAFQLTNISRDV------ 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~----~~~~~~~~~~~a~~~g~a~q~~nilrd~------ 1350 (1428)
                      ..+++.|...|+... ...|++++..-+++=.|++-.+.+.+    -|.++.....++.++|.|+|+.+=+-|+      
T Consensus       136 ~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~  215 (299)
T 1v4e_A          136 IGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKI  215 (299)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred             HHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence            468889999998632 22688888776666555554444433    2444444678999999999999888776      


Q ss_pred             ----hhhhcCCceeecHHHHHhcCCCccccccccchHHHHHH------HHHHHHHHHHHHHHHHHhhcCCCcc
Q psy10545       1351 ----IDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKV------VTRILDVAEFYYSSSLVKLNTLPLR 1413 (1428)
Q Consensus      1351 ----~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~A~~~~~~a~~~~~~lp~~ 1413 (1428)
                          +.|+..|++-+|.=..-+..-...++...+....+.+.      +....+.++.+.++|+..+..+|..
T Consensus       216 GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~  288 (299)
T 1v4e_A          216 GKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDF  288 (299)
T ss_dssp             CTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC
T ss_pred             CCCcchHhhCCCchHHHHHHHHhChHHHHHHhHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                45677899999975432221101111111122223332      3345566788889999988888754

>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...

Probab=87.17  E-value=3.3  Score=47.26  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCc--cchHHHHHHHHHHHHHHHHHhc
Q psy10545       1281 LLFEHLDGFEMDVMER-----TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKE--KDTLNCARNLGIAFQLTNISRD 1349 (1428)
Q Consensus      1281 ~~~~li~~~~~dl~~~-----~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~--~~~~~~a~~~g~a~q~~nilrd 1349 (1428)
                      .+.+++.|...|+...     ...|++++..-+++=.|++-.+.+.+   + |.+.  .....++.++|.|+|+.+=+-|
T Consensus       139 ~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD~ld  218 (340)
T 2e8v_A          139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLN  218 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568889999998632     24588888876666555555544443   2 2222  2356899999999999988887


Q ss_pred             c-----------hhhhcCCceeecHHHHHhcCCC------cccc---c-cccchH----HHHHH-------HHHHHHHHH
Q psy10545       1350 V-----------IDDFYVGRCYLPLDWLRNEGLN------KSNF---V-LAENRK----KLFKV-------VTRILDVAE 1397 (1428)
Q Consensus      1350 ~-----------~~d~~~gR~ylP~~~~~~~~~~------~~~~---~-~~~~~~----~~~~~-------~~~~~~~A~ 1397 (1428)
                      +           +.|+..|++-+|.=..-+..-.      ...+   . .....+    .+.+.       +...-+.|+
T Consensus       219 ~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~  298 (340)
T 2e8v_A          219 LKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFIN  298 (340)
T ss_dssp             HHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             ccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6           3688889999987543222111      0001   1 111111    22222       234456788


Q ss_pred             HHHHHHHHh-----hcCCCcc
Q psy10545       1398 FYYSSSLVK-----LNTLPLR 1413 (1428)
Q Consensus      1398 ~~~~~a~~~-----~~~lp~~ 1413 (1428)
                      ++.++|+..     +..+|..
T Consensus       299 ~~~~~A~~~~~~~~L~~lp~~  319 (340)
T 2e8v_A          299 QLVNMIKNDNENKYLPDLASH  319 (340)
T ss_dssp             HHHHHHHTC------------
T ss_pred             HHHHHHHhccCcccHhhCCCC
Confidence            999999998     9998855

>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*

Probab=87.07  E-value=3.4  Score=47.44  Aligned_cols=132  Identities=18%  Similarity=0.183  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---hCCCccc----hHHHHHHHHHHHHHHHHHhcch-
Q psy10545       1282 LFEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---IGVKEKD----TLNCARNLGIAFQLTNISRDVI- 1351 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~~----~~~~a~~~g~a~q~~nilrd~~- 1351 (1428)
                      ..+++.|..+|+....  -.|++++..-+++=.|++-.+.+.+   ++-.+++    ...++.++|.|+|+.|=+-|+. 
T Consensus       162 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~g  241 (348)
T 3apz_A          162 VEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTG  241 (348)
T ss_dssp             HHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            4688999999997542  2477776654444444433333332   3322322    3568899999999999888863 


Q ss_pred             ----------hhhcCCceeecHHHHHhcCCCcccccc-----ccchHHHHH------HHHHHHHHHHHHHHHHHHhhcCC
Q psy10545       1352 ----------DDFYVGRCYLPLDWLRNEGLNKSNFVL-----AENRKKLFK------VVTRILDVAEFYYSSSLVKLNTL 1410 (1428)
Q Consensus      1352 ----------~d~~~gR~ylP~~~~~~~~~~~~~~~~-----~~~~~~~~~------~~~~~~~~A~~~~~~a~~~~~~l 1410 (1428)
                                .|+..|++-+|.=..-+..-...++..     +.....+.+      .+...-+.|+++.++|+..+..+
T Consensus       242 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l  321 (348)
T 3apz_A          242 TSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSL  321 (348)
T ss_dssp             TTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcC
Confidence                      578889999997653332111001110     111122222      33445577889999999999999


Q ss_pred             Ccc
Q psy10545       1411 PLR 1413 (1428)
Q Consensus      1411 p~~ 1413 (1428)
                      |..
T Consensus       322 ~~~  324 (348)
T 3apz_A          322 PET  324 (348)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.17  E-value=0.46  Score=53.79  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +.+|.|||+|..|...|..|+++|++|++++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999999999999975

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.11  E-value=0.46  Score=53.20  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ..+|.|||+|..|...|..|+++|++|++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999975

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=86.06  E-value=0.41  Score=54.13  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ..+|+|||||..|..-|..++.+|++|+++|.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999999999999975

>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}

Probab=85.32  E-value=2.8  Score=46.87  Aligned_cols=116  Identities=15%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             HHHHHHHhhccCCC-CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcchhhhc
Q psy10545       1284 EHLDGFEMDVMERT-YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDVIDDFY 1355 (1428)
Q Consensus      1284 ~li~~~~~dl~~~~-~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~~~d~~ 1355 (1428)
                      .|+.|...|+.... -.|++++..-+++=.|.+-.+.+.+   + |.++.   ....++.++|.|+|+.|=+.|+..|-.
T Consensus       157 ~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~  236 (302)
T 3p8l_A          157 GMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEA  236 (302)
T ss_dssp             THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            57788888986532 4588888776555555554444433   3 33322   246788999999999998888854422


Q ss_pred             -CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10545       1356 -VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411 (1428)
Q Consensus      1356 -~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp 1411 (1428)
                       .|+-.            -+|+.++..+--+.-.+..--+.+++++++|.+.+..+|
T Consensus       237 ~~GK~~------------g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~  281 (302)
T 3p8l_A          237 DLGKKV------------GRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIK  281 (302)
T ss_dssp             --------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCh------------hhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             22210            123333333322233444455667777777777777775

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=85.23  E-value=0.36  Score=57.88  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      .++|.|||.|.+|+++|..|+++|++|++.|.+...-|
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~   42 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence            35799999999999999999999999999999876533

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=84.90  E-value=0.44  Score=46.78  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +.+|+|+|+|..|...|..|.+.|++|++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356999999999999999999999999999875

>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}

Probab=84.64  E-value=8.1  Score=42.96  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhhccCCC-CCCHHHHHHHHHHHhHHHHHHHHHh---hCCCcc----chHHHHHHHHHHHHHHHHHhcchh-
Q psy10545       1282 LFEHLDGFEMDVMERT-YITLDETLGYCYHVAGTIGLIIAHL---IGVKEK----DTLNCARNLGIAFQLTNISRDVID- 1352 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~-~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~----~~~~~a~~~g~a~q~~nilrd~~~- 1352 (1428)
                      ..+|+.|...|+.... ..|++++..-+++=.|++-.+.+.+   ++-.++    ....++.++|.|+|+.|=+-|+.. 
T Consensus       136 ~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~  215 (295)
T 3ipi_A          136 GMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEV  215 (295)
T ss_dssp             HHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3578999999987532 2466776665555555555554443   333332    246788999999999998888854 


Q ss_pred             ----hhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy10545       1353 ----DFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLR 1413 (1428)
Q Consensus      1353 ----d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 1413 (1428)
                          |+..|.+-+|.=...+.+          .    .+.+..--+.|+++.++|++.+..+|..
T Consensus       216 ~~gkd~~~gk~Tlp~l~al~~~----------~----~~~le~a~~~a~~~~~~A~~~L~~lp~~  266 (295)
T 3ipi_A          216 VEGKESKFTSETLPHIYMKSTS----------K----EEALKKSIDCVKLHVAAAKETLETFREC  266 (295)
T ss_dssp             HHC-------CCHHHHHTTTSC----------H----HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ccCCCcccCcccHHHHHHHhcC----------c----hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                455667777753322111          0    1245566788899999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.43  E-value=0.52  Score=48.80  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhC-CCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~  744 (1428)
                      ..+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=84.40  E-value=0.52  Score=54.53  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             cccccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        707 LSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       707 ~~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +.+.+++|.|||+|.-|.+.|..|+++|++|++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3344578999999999999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=83.90  E-value=0.73  Score=54.83  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .+...+|.|||+|..|...|..|+++|++|+++|.++
T Consensus        51 ~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           51 AYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            3445689999999999999999999999999999864

>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}

Probab=83.89  E-value=3.6  Score=46.74  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhccCC-CCCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcch---
Q psy10545       1283 FEHLDGFEMDVMER-TYITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDVI--- 1351 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~-~~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~~--- 1351 (1428)
                      ..|+.|...|+... .-.|++++..-.++=.|.+-.+.+.+   + |.+++   ....++.++|.|+|+.|=+-|+.   
T Consensus       192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~  271 (335)
T 2h8o_A          192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA  271 (335)
T ss_dssp             TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            46788888888632 24588888877766666554444433   2 43332   24678899999999999888874   


Q ss_pred             --------hhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10545       1352 --------DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPL 1412 (1428)
Q Consensus      1352 --------~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 1412 (1428)
                              .|+..|++-+|.=                      -.+..--+.|+++.++|++.+..+|.
T Consensus       272 ~~~GK~~g~Dl~egK~T~p~l----------------------~~le~a~~~a~~~~~~A~~~L~~l~~  318 (335)
T 2h8o_A          272 ATMGKATGKDAARGKGTLVAL----------------------RGEAWAREKLQEQVAEASELLAPYGE  318 (335)
T ss_dssp             --------------CCCHHHH----------------------HCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred             HHhCCCcchHHhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence                    4455555555542                      23445567788888999999988885

>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}

Probab=83.68  E-value=4.7  Score=46.15  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcc--
Q psy10545       1282 LFEHLDGFEMDVMERT--YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDV-- 1350 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~-- 1350 (1428)
                      ...++.|..+|+....  -.|++++..-+++=.|.+-.+.+.+   + |.+..   ....++.++|.|+|+.|=+-|+  
T Consensus       146 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~  225 (342)
T 1wy0_A          146 SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIA  225 (342)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4788999999986432  3488888877776666665555543   2 43332   2467889999999999877776  


Q ss_pred             ---------hhhhcCCceeecHHHHHhcCCCcc------ccccc----------------cchHHHHHHH------HHHH
Q psy10545       1351 ---------IDDFYVGRCYLPLDWLRNEGLNKS------NFVLA----------------ENRKKLFKVV------TRIL 1393 (1428)
Q Consensus      1351 ---------~~d~~~gR~ylP~~~~~~~~~~~~------~~~~~----------------~~~~~~~~~~------~~~~ 1393 (1428)
                               +.|+..|++-+|.=..-+.. +++      .+...                .....+.+.+      ..--
T Consensus       226 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~  304 (342)
T 1wy0_A          226 DEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAA  304 (342)
T ss_dssp             CHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ChhhhCCCchhHHhCCCCcHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHH
Confidence                     46888899999975443322 111      01111                1111222222      2345


Q ss_pred             HHHHHHHHHHHHhhcCCCcc
Q psy10545       1394 DVAEFYYSSSLVKLNTLPLR 1413 (1428)
Q Consensus      1394 ~~A~~~~~~a~~~~~~lp~~ 1413 (1428)
                      +.+++++++|+..+..+|..
T Consensus       305 ~~~~~~~~~A~~~L~~l~~~  324 (342)
T 1wy0_A          305 EIAKDMIKKANEALRILPKS  324 (342)
T ss_dssp             HHHHHHHHHHHTTGGGSCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCc
Confidence            67889999999999999854

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=83.03  E-value=0.86  Score=52.12  Aligned_cols=35  Identities=20%  Similarity=0.032  Sum_probs=31.1

Q ss_pred             cceeeecCCCcchHH-HHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIA-LAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLs-AA~~La~~G~~V~VlEa~~~  745 (1428)
                      +++|.|||.|-+|++ +|..|+++|++|++.|+++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999997 78899999999999998653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=82.86  E-value=0.5  Score=50.65  Aligned_cols=39  Identities=33%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CccccccceeeecCCCcchHHHHHHHHhCCCeEEE-EccC
Q psy10545        705 NKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTII-LEQR  743 (1428)
Q Consensus       705 ~~~~~~~~dViIIGaGiaGLsAA~~La~~G~~V~V-lEa~  743 (1428)
                      +-..|.+++|.|||+|..|.+.|..|++.|++|++ ++++
T Consensus        17 ~~~~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           17 NLYFQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CTTGGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             chhhhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            33345567899999999999999999999999998 7764

>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A

Probab=82.60  E-value=35  Score=38.61  Aligned_cols=183  Identities=14%  Similarity=-0.005  Sum_probs=103.7

Q ss_pred             HHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHc--CCCHH
Q psy10545       1205 RYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKM--KEPAFLALQKIISIH--SFPVH 1280 (1428)
Q Consensus      1205 r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~p~~~~l~~~~~~~--~l~~~ 1280 (1428)
                      ..-++-+.++.-.+||+-|.......           ..++.+.+.+.+...+..+  ..|+..+|.++.++.  ...+.
T Consensus        66 l~~~ak~~~~~~~~DD~~D~~~~~~~-----------ee~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~~~~~~  134 (337)
T 1ps1_A           66 LDLGVDLMSWFFLFDDLFDGPRGENP-----------EDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPA  134 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSGGGGCH-----------HHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHhhccCCcCCCCH-----------HHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhccCCHH
Confidence            33566778888899999997421111           1233444555544444432  578888888877664  34444


Q ss_pred             HH-------HHHHHHHHhhcc---CCCCC-CHHHHHHHHHHHhHHHHHHHHHhh--CCCc-------cchHHHHHHHHHH
Q psy10545       1281 LL-------FEHLDGFEMDVM---ERTYI-TLDETLGYCYHVAGTIGLIIAHLI--GVKE-------KDTLNCARNLGIA 1340 (1428)
Q Consensus      1281 ~~-------~~li~~~~~dl~---~~~~~-t~~~l~~Y~~~vag~vg~~~~~~~--~~~~-------~~~~~~a~~~g~a 1340 (1428)
                      ..       .++++++.....   ...++ |++|+..+...+.|.--.+.+..+  |..-       +......+..+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i  214 (337)
T 1ps1_A          135 WCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDV  214 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHH
Confidence            43       344445444332   23466 888888877777665433333333  4321       1122455566777


Q ss_pred             HHHHHHHhcchhhhcCCce-eecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10545       1341 FQLTNISRDVIDDFYVGRC-YLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKL 1407 (1428)
Q Consensus      1341 ~q~~nilrd~~~d~~~gR~-ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 1407 (1428)
                      .-|+|=|-........|-+ =.-.-.+.++|++.+         .+.+.+.++++.+.+.+.....-+
T Consensus       215 ~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~e---------eA~~~v~~~i~~~~~~~~~~~~~l  273 (337)
T 1ps1_A          215 NLLLNDIASLEKEEARGEQNNMVMILRREHGWSKS---------RSVSHMQNEVRARLEQYLLLESCL  273 (337)
T ss_dssp             HHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777877777777777763 233456777888754         344556666666666665555433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=82.54  E-value=0.69  Score=53.19  Aligned_cols=33  Identities=30%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +++|.|||+|.-|.+.|..|+++|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999999999999873

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=82.52  E-value=0.74  Score=52.24  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +++|.|||+|..|...|..|+++|++|++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            357999999999999999999999999999874

>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}

Probab=82.44  E-value=7.3  Score=43.08  Aligned_cols=116  Identities=17%  Similarity=0.207  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhccCC-C--CCCHHHHHHHHHHHhHHHHHHHHHh----hCCCccchHHHHHHHHHHHHHHHHHhcchhhhc
Q psy10545       1283 FEHLDGFEMDVMER-T--YITLDETLGYCYHVAGTIGLIIAHL----IGVKEKDTLNCARNLGIAFQLTNISRDVIDDFY 1355 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~-~--~~t~~~l~~Y~~~vag~vg~~~~~~----~~~~~~~~~~~a~~~g~a~q~~nilrd~~~d~~ 1355 (1428)
                      ..++.|...|+... .  -.|++++..-+++=.|++-.+.+.+    -|.++.....++.++|.|+|+.|=+.|+..|.+
T Consensus       144 ~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~  223 (284)
T 2ftz_A          144 YXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSFE  223 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            68889999998642 1  4688888887777666665554443    244444567899999999999999899877654


Q ss_pred             -CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10545       1356 -VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPL 1412 (1428)
Q Consensus      1356 -~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 1412 (1428)
                       .|+-.  .          +|+.  ..+--+.-.++.--+.|+++.++|++.+..+|.
T Consensus       224 ~~GK~~--g----------~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~  267 (284)
T 2ftz_A          224 KVGKDL--G----------KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL  267 (284)
T ss_dssp             CC-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhCCCc--c----------hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence             34310  0          1221  111112223445567788888888888888884

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=82.33  E-value=0.93  Score=51.67  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      .+++|.|||.|..|...|..|++.|++|++++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCC
Confidence            4568999999999999999999999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=82.27  E-value=0.81  Score=52.35  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCC-eEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~  744 (1428)
                      +.+|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4689999999999999999999998 999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=81.92  E-value=0.63  Score=49.76  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +|+|||+|-.|...|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=81.71  E-value=1.1  Score=53.89  Aligned_cols=35  Identities=23%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhC-CC-eEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTA-GI-STIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~-G~-~V~VlEa~~~  745 (1428)
                      .++|.|||+|.-|+..|..|+++ |+ +|++++.+..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999998764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=81.65  E-value=0.89  Score=51.86  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|.|||+|.-|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            579999999999999999999999999999853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=81.26  E-value=0.92  Score=51.49  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ++|.|||+|.-|.+.|..|+++|++|+++.++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            57999999999999999999999999999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.95  E-value=1  Score=52.47  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ...+|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35689999999999999999999999999999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=80.80  E-value=1  Score=50.95  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCC-eEEEEccC
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQR  743 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~  743 (1428)
                      .|...+|.|||+|..|.+.|+.|++.|+ +|+++|..
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3445689999999999999999999999 99999986

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=80.75  E-value=1.1  Score=47.48  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ...+|.|||+|..|.+.|..|+++|++|++++++..
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            356899999999999999999999999999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=80.63  E-value=0.98  Score=51.44  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCC--eEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGI--STIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~--~V~VlEa~~  744 (1428)
                      +++|+|||+|-.|.+.|..|++.|+  +|++++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999999  999999853

>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*

Probab=80.61  E-value=8.4  Score=43.07  Aligned_cols=117  Identities=17%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             HHHHHHHHhhccCCC-CCCHHHHHHHHHHHhHHHHHHHHHh---h-CCCcc---chHHHHHHHHHHHHHHHHHhcchhhh
Q psy10545       1283 FEHLDGFEMDVMERT-YITLDETLGYCYHVAGTIGLIIAHL---I-GVKEK---DTLNCARNLGIAFQLTNISRDVIDDF 1354 (1428)
Q Consensus      1283 ~~li~~~~~dl~~~~-~~t~~~l~~Y~~~vag~vg~~~~~~---~-~~~~~---~~~~~a~~~g~a~q~~nilrd~~~d~ 1354 (1428)
                      ..|+.|...|+.... -.|++++..-+++=.|.+-.+.+.+   + |.++.   ....++.++|.|+|+.+=+-|+..|-
T Consensus       155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~  234 (309)
T 3pde_A          155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP  234 (309)
T ss_dssp             TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            357788888987542 3588888876655555554444433   3 33332   24678899999999999888884432


Q ss_pred             c-CCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10545       1355 Y-VGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411 (1428)
Q Consensus      1355 ~-~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp 1411 (1428)
                      + .|+-            .-+|+.++..+--+.-+++.--+.+++++++|...+..+|
T Consensus       235 ~~~GK~------------~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~  280 (309)
T 3pde_A          235 AEMGKA------------TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP  280 (309)
T ss_dssp             ----------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhCCC------------ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            1 1210            0123333333322333444444566666666666666643

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=80.50  E-value=0.95  Score=54.60  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      .+++|.|||+|.-|+..|..|+++|++|++++.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3578999999999999999999999999999975

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=80.50  E-value=0.68  Score=51.05  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ....|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999998753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=80.47  E-value=0.97  Score=52.39  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +++|.|||+|..|...|..|++.|++|++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            468999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1428
d1ezfa_	333	a.128.1.2 (A:) Squalene synthase {Human (Homo sapi	2e-42
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-30
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	8e-27
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.002
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-26
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-05
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	4e-23
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	8e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-21
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	7e-21
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.003
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-18
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.001
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	9e-18
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	6e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-06
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.002
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	0.003
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.001
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	8e-04
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	8e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.001
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	0.001
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	0.002
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.002
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.003
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.003
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.003
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.003

>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 333

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Squalene synthase
domain: Squalene synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 2e-42
 Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 15/257 (5%)

Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSK------FLKKN 1237
            K +   S+SF++ I+  D  +R  V + Y   R  D + D+       K      F    
Sbjct: 8    KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFL 67

Query: 1238 VSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERT 1297
                 +    + K ++    F       L  + +   +   +  +   +     + +++ 
Sbjct: 68   YQPDWRFMESKEKDRQVLEDF---PTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKH 124

Query: 1298 YITLDETLGYCYHVAGTIGLIIAHLIGVKE------KDTLNCARNLGIAFQLTNISRDVI 1351
              +  E   YC++VAG +G+ ++ L    E       +    A ++G+  Q TNI RD +
Sbjct: 125  VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYL 184

Query: 1352 DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411
            +D   GR + P +          +F   EN     + +  ++  A  +    +  L+ L 
Sbjct: 185  EDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLR 244

Query: 1412 LRSTLAIVTSWSIYREI 1428
             +S         +    
Sbjct: 245  NQSVFNFCAIPQVMAIA 261

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-30
 Identities = 55/489 (11%), Positives = 126/489 (25%), Gaps = 72/489 (14%)

Query: 718  GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
            G+G+ G+A A +LQ+ G+   +LE RD+ GGR   +++  ++ D G  V+T       + 
Sbjct: 12   GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMA 70

Query: 778  DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             +SK   +  + L  IK    LY    + +  E +    +             +   L  
Sbjct: 71   VVSK---QVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQ------------EFNRLLEA 115

Query: 838  SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
            +  +  +   +  +   +++   L ++ +L +            + +K     +      
Sbjct: 116  TSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKM 175

Query: 898  LFIG---GNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
            + +              + +         +  K     L     +  +       L  ++
Sbjct: 176  VNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKL 235

Query: 955  ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
              +                   +D+ +S+ D      +              L  K    
Sbjct: 236  QEL--------------EANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQ 281

Query: 1015 SLFVIYFGLSEQYTHLAHHTI-FFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA 1073
                 + G      +                +     +     +    +   + +     
Sbjct: 282  DDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTF 341

Query: 1074 PTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPND 1133
               C      +P+  L                          +P L          T   
Sbjct: 342  IYKCDAVLCTLPLGVLKQ-----------------QPPAVQFVPPLP------EWKTSAV 378

Query: 1134 FKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG------------- 1180
             + V     G+ +             P    + +  L+F G  T                
Sbjct: 379  QRMVAAGSSGNDYDLMAQPITPGPSIPGAP-QPIPRLFFAGEHTIRNYPATVHGALLSGL 437

Query: 1181 -AANKIIKA 1188
              A +I   
Sbjct: 438  REAGRIADQ 446

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL-----SWINLKFQFGVGYPNTNQGLWNSIIA 372
           G+G+ G+A A +LQ+ G+   +LE RD++     ++    +   +G      GL  + +A
Sbjct: 12  GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG-AMVVTGLGGNPMA 70

Query: 373 WYLKQYNPKL 382
              KQ N +L
Sbjct: 71  VVSKQVNMEL 80

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  111 bits (276), Expect = 8e-27
 Identities = 34/284 (11%), Positives = 88/284 (30%), Gaps = 11/284 (3%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD 769
           +D I +  G G+    L+  +   G   + +++    GG +        ++     +   
Sbjct: 7   YDVIVL--GTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

Query: 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIK 829
           P ++    D + + +  ++          LY    ++L+++        +  K       
Sbjct: 65  PETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPST 124

Query: 830 GYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYL 889
                 +    +F++             ++      + +  +            +  D +
Sbjct: 125 ETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVI 184

Query: 890 KQAFSFNSLFIGGNPFSTSSIYTLIHALEY--------EWGIWFPKGGVGALIKALIKLF 941
                  +L+   +      + T+     Y        +    +P  G+G L +   +L 
Sbjct: 185 DFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLS 244

Query: 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985
              GG  +LN  V  I + N KV       G++     ++ +  
Sbjct: 245 AIYGGTYMLNKPVDDIIMENGKV-VGVKSEGEVARCKQLICDPS 287

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 12/143 (8%), Positives = 33/143 (23%), Gaps = 8/143 (5%)

Query: 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL-----SWINLKFQFGVG-YPNTN 363
           +D I +  G G+    L+  +   G   + +++         S   L+  +         
Sbjct: 7   YDVIVL--GTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

Query: 364 QGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS 423
                    W +      L      +   +   +  +    +    ++     I     +
Sbjct: 65  PETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPST 124

Query: 424 YQVKFPKFNRKIFSGYYSICSKH 446
                      +F          
Sbjct: 125 ETEALASNLMGMFEKRRFRKFLV 147

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score =  110 bits (274), Expect = 2e-26
 Identities = 43/272 (15%), Positives = 79/272 (29%), Gaps = 7/272 (2%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           G GI G+A+A  L++ G   ++LE   + GG    +   G++ + GP    D        
Sbjct: 7   GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRAL 66

Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
             + N         P      +Y               L   I            LF   
Sbjct: 67  AAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRR 126

Query: 838 SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKN--DYLKQAFSF 895
           + +   E   +F  +        + +      I A       V+          ++  S 
Sbjct: 127 APEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSL 186

Query: 896 NSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVI 955
               I        +      A +    +    GG+  LI AL     +LG    + ++V 
Sbjct: 187 ILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALA---ASLGDAAHVGARVE 243

Query: 956 SIYVNNNKVNKVHLKNG--QIFDADIIVSNAD 985
            +   +     +  ++G         +V  A 
Sbjct: 244 GLAREDGGWRLIIEEHGRRAELSVAQVVLAAP 275

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL-----SWINLKFQFGVGYPNTNQGLWNSIIA 372
           G GI G+A+A  L++ G   ++LE   +L     +     +    G PN+          
Sbjct: 7   GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQG-PNSFLD-REPATR 64

Query: 373 WYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN 432
                 N +  +   + ++  +          + +S    +   I       +V    F+
Sbjct: 65  ALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFS 124

Query: 433 RKIFSGYY 440
           R+   G  
Sbjct: 125 RRAPEGVD 132

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  101 bits (250), Expect = 4e-23
 Identities = 44/285 (15%), Positives = 83/285 (29%), Gaps = 22/285 (7%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVIT--DPNSIKL 775
           GAG+ G+A A +L+  G++  + E   K GG+     QDG I+D G   +T  + +   L
Sbjct: 8   GAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFL 67

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
           +  L     + +      +   R         N  D IK             ++      
Sbjct: 68  IDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKN 127

Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF 895
               +V                 +++  L               +S       L      
Sbjct: 128 KKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKR 187

Query: 896 NSLFIGG--------NPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGN 947
               I G                       + + G +   GG+  L  A+ K  +     
Sbjct: 188 FGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR--EDE 245

Query: 948 LILNSQVISIYVNNNKVNKVHLK----------NGQIFDADIIVS 982
           L LNS+V+ +  +  + + +               +    D ++ 
Sbjct: 246 LRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIM 290

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 41.0 bits (94), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
           GAG+ G+A A +L+  G++  + E   K 
Sbjct: 8   GAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 4e-21
 Identities = 49/268 (18%), Positives = 92/268 (34%), Gaps = 19/268 (7%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY-VYKQDGFIFDAGPTVI--TDPNSIK 774
           G GI G+A A  L  +G++ ++LE RD+ GGR Y +  Q     D G + +  T    ++
Sbjct: 6   GGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR 65

Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
           L  +L        +    +    RL    +                      D   +   
Sbjct: 66  LAKELG-------LETYKVNEVERLIHHVKGKSYPFRG--PFPPVWNPITYLDHNNFWRT 116

Query: 835 LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
           ++   +         A        D + +   L K+   +S   + + F+      +   
Sbjct: 117 MDDMGREIPSDAPWKA--PLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHE 174

Query: 895 FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
            ++L+            T I +           GG G + + ++ L   LG  + L   V
Sbjct: 175 VSALW-FLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPV 230

Query: 955 ISIYVNNNKVNKVHLKNGQIFDADIIVS 982
           I I      V  V   N ++++A  ++S
Sbjct: 231 IYIDQTRENV-LVETLNHEMYEAKYVIS 257

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
           G GI G+A A  L  +G++ ++LE RD++
Sbjct: 6   GGGISGMAAAKLLHDSGLNVVVLEARDRV 34

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 7e-21
 Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 16/289 (5%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD 769
           +D I +  G GI    L+  L   G   + ++++D  GG A                I+ 
Sbjct: 6   YDVIVL--GTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 770 PNSIKLL-----FDLSKNRMENYVN------LLPIKPFYRLYWGKEKFLNYEDNIKDLEK 818
                       +++         N      L+       + + +          K  + 
Sbjct: 64  EERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKV 123

Query: 819 QIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYS 878
              +          +F     K F E   S+      T   +      + ++     + +
Sbjct: 124 PANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGN 183

Query: 879 IVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALI 938
              +FI +                  F    +Y    A   +    +P  G+G L +   
Sbjct: 184 STKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFA 243

Query: 939 KLFQNLGGNLILNSQVISIYV--NNNKVNKVHLKNGQIFDADIIVSNAD 985
           +L    GG  +L++ +  +    +  K   V       F A +++++  
Sbjct: 244 RLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPT 291

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNS 369
           +D I +  G GI    L+  L   G   + ++++D              Y    Q   + 
Sbjct: 6   YDVIVL--GTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 370 IIAWYLKQYNPKLNV 384
                    +   NV
Sbjct: 64  EERESKFGKDRDWNV 78

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 86.0 bits (211), Expect = 4e-18
 Identities = 47/269 (17%), Positives = 81/269 (30%), Gaps = 22/269 (8%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--GFIFDAGPTVITDPNSIKL 775
           GAG+ G++ A  L  AG    +LE  ++PGGR   Y+ +  G+  + GP  + + +  ++
Sbjct: 37  GAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKH--RI 94

Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
           + +  +                  +    +    E        +         K      
Sbjct: 95  VREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLY 154

Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF 895
             S     E          L   D       LIK          +   + N+      SF
Sbjct: 155 EESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSF 214

Query: 896 NSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVI 955
                  + F             YE        G+  L  A+ +        +  N+QVI
Sbjct: 215 IESLKHDDIF------------AYEKRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVI 259

Query: 956 SIYVNNNKVN---KVHLKNGQIFDADIIV 981
            I  N+ KV    +   K      AD ++
Sbjct: 260 KIQQNDQKVTVVYETLSKETPSVTADYVI 288

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 40.9 bits (94), Expect = 0.001
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ 377
           GAG+ G++ A  L  AG    +LE  ++       ++          G + ++    L +
Sbjct: 37  GAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE------EAGWYANLGPMRLPE 90

Query: 378 YNPKLNVLLLELSSSVKNHIWSFHQNDI 405
            +  +   + +    +            
Sbjct: 91  KHRIVREYIRKFDLRLNEFSQENDNAWY 118

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 84.2 bits (206), Expect = 9e-18
 Identities = 45/279 (16%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 718 GAGIGGIALAIRLQTAGISTI-ILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLL 776
           GAG+ GI+ A RL  AGI+ + ILE  D  GGR +     G   + G   +   N  K+ 
Sbjct: 7   GAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKM- 65

Query: 777 FDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLN 836
                N +   VN       +R  +       Y+++    ++   +  +           
Sbjct: 66  -----NPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGE 120

Query: 837 YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFN 896
                         S   +   +          +      Y    +F +   +    +  
Sbjct: 121 KLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 180

Query: 897 SLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVIS 956
            L    +              +            G  +K   K  + +   L LN  V  
Sbjct: 181 PLATFSDFGDDVYFVA-----DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVRE 235

Query: 957 IYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995
           I  +   V  V  ++  ++ AD ++ +A +     +L+ 
Sbjct: 236 IKYSPGGV-TVKTEDNSVYSADYVMVSASLGVLQSDLIQ 273

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 41.5 bits (95), Expect = 6e-04
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 4/132 (3%)

Query: 318 GAGIGGIALAIRLQTAGISTI-ILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLK 376
           GAG+ GI+ A RL  AGI+ + ILE  D +     K  F  G        W  +      
Sbjct: 7   GAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA-GINVELGANW--VEGVNGG 63

Query: 377 QYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF 436
           + NP   ++   L        + +   ++      +                 +   K+ 
Sbjct: 64  KMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLS 123

Query: 437 SGYYSICSKHLN 448
           +  ++     ++
Sbjct: 124 ATLHASGRDDMS 135

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGF-IFDAGPTVITDPNSIKLL 776
           G+G+ G   A  L+      +++E+R+  GG AY    +G  I   G  +    +     
Sbjct: 8   GSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWD 67

Query: 777 FDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIK 829
           +         + N        +L+        +       + Q A+  +N  K
Sbjct: 68  YVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQK 120

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK---QDGFIFDAGPTVITDPNSIK 774
           GAG  G  +  +L   G    I++QRD  GG +Y  +    +  +   GP +       +
Sbjct: 9   GAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF--HTDNE 66

Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
            +++      E    +  +K              +  N    +          I      
Sbjct: 67  TVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDS 126

Query: 835 LNYSKKVFKEGYLSF 849
                + F+E  L F
Sbjct: 127 TIADPQTFEEEALRF 141

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 7/202 (3%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           GAG  G+    RL+  G S  ++E     GG  Y  +  G   D          S ++L 
Sbjct: 14  GAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQ 73

Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
           +   N  E Y +   I  +       +KF              A F   D       ++ 
Sbjct: 74  E--WNWTERYASQPEILRYINFVA--DKFDLRSGITFHTTVTAAAF---DEATNTWTVDT 126

Query: 838 SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
           +            +   L+      +    I+     ++    +   +         F +
Sbjct: 127 NHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPN 186

Query: 898 LFIGGNPFSTSSIYTLIHALEY 919
           LF    P S S++  ++ ++E 
Sbjct: 187 LFFIAGPGSPSALSNMLVSIEQ 208

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.8 bits (92), Expect = 0.002
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
           GAG  G+    RL+  G S  ++E    +
Sbjct: 14  GAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749
           D+I +  G  I G+  A+ L+ AG+   + E+  +P   
Sbjct: 5   DRIAV-VGGSISGLTAALMLRDAGVDVDVYERSPQPLSG 42

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD 344
           D+I +  G  I G+  A+ L+ AG+   + E+  
Sbjct: 5   DRIAV-VGGSISGLTAALMLRDAGVDVDVYERSP 37

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 698 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL-QTAGISTIILEQRDKPGG 748
           + R +  + +++ +   +  GAG  G++ A  + +   +   I+EQ   PGG
Sbjct: 20  MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL-QTAGISTIILEQRDKLSWINLKFQFG 356
           + R +  + +++ +   +  GAG  G++ A  + +   +   I+EQ             G
Sbjct: 20  MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL--GG 77

Query: 357 VGYPNTNQGLWNSIIAWYLKQYNPKLN 383
             +      +       +L +     +
Sbjct: 78  QLFSAM---IVRKPAHLFLDEIGVAYD 101

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749
           +D I I  G G  G+  AI     G + ++L++ +K G +
Sbjct: 3   YDVIVI--GGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK 40

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
           GAG  G+ L   L  AGI  +ILE++        +              + +   + LL 
Sbjct: 9   GAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIR-----------AGVLEQGMVDLLR 57

Query: 778 DL 779
           + 
Sbjct: 58  EA 59

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.7 bits (94), Expect = 0.001
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDK 345
           GAG  G+ L   L  AGI  +ILE++  
Sbjct: 9   GAGPSGLLLGQLLHKAGIDNVILERQTP 36

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/123 (14%), Positives = 30/123 (24%), Gaps = 16/123 (13%)

Query: 718 GAGIGGIALAIRLQTAGI--STIILEQRDKPGGRAYVYKQDGFIFDAG---PTVITDPNS 772
           GAG  G+  A  L          + E+R  PGG                  P + T+P  
Sbjct: 11  GAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIV 70

Query: 773 IKLLFDLSKNRMENYVNL-----------LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIA 821
                 +  + +   +                KP    +  +     Y+           
Sbjct: 71  GPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFI 130

Query: 822 KFN 824
           K  
Sbjct: 131 KLA 133

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.9 bits (94), Expect = 8e-04
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%)

Query: 718 GAGIGGIALAIRLQTAGISTI-ILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLL 776
           GAGIGG++ A+ L  AGI  + +LE   +                 G  +   P +++ L
Sbjct: 8   GAGIGGLSCALALHQAGIGKVTLLESSSEIR-------------PLGVGINIQPAAVEAL 54

Query: 777 FDLSKNRMENYVNLLPIKPFYRLYWGKEKF 806
            +L          +   +  Y    G   +
Sbjct: 55  AELGLGPALAATAIPTHELRYIDQSGATVW 84

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 898 LFIGGNPFSTSSIYTLIHALEYEWGIWFPK----GGVGALIKALIKLFQNLGGNLILNSQ 953
             +G           +                       + + L+++    G  L  N+ 
Sbjct: 25  AVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAI 84

Query: 954 VISIYVNNNKVNKVHLKNGQIFDADIIV 981
             ++  N +    + L++G+    D ++
Sbjct: 85  PKAVVKNTDGSLTLELEDGRSETVDCLI 112

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750
           FD I +  GAG  G+A   +L   G+ T++++  D P    
Sbjct: 4   FDVIVV--GAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.9 bits (92), Expect = 0.001
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYV 752
           GAG  G+  A +L   G S  + +   K G +  +
Sbjct: 11  GAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 40.3 bits (93), Expect = 0.001
 Identities = 50/383 (13%), Positives = 89/383 (23%), Gaps = 44/383 (11%)

Query: 710  FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD 769
            +D + +  G+G  G   A  L  AG    + +      G      + G           +
Sbjct: 5    YDVVIV--GSGPIGCTYARELVGAGYKVAMFDI-----GEIDSGLKIGAHKKNTVEYQKN 57

Query: 770  PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNY---EDNIKDLEKQIAKFNLN 826
             +    +       +   VN L +       W    F            L     +    
Sbjct: 58   IDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTR 117

Query: 827  DIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKN 886
             + G       +   F         K     +D              +S +   +   K 
Sbjct: 118  VVGGMSTHWTCATPRFDREQRPLLVKDDADADDA----EWDRLYTKAESYFQTGTDQFKE 173

Query: 887  DYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGG 946
                                   I          +  W     V  L             
Sbjct: 174  SIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERF 233

Query: 947  NLILNSQVISIYVN--NNKVNKVHLKNG-----QIFDADIIVSNADIINTYRNLLGQYAF 999
            NL        +  N  N+++  +H+ +          AD+ V  A  ++  + L+     
Sbjct: 234  NLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSG-- 291

Query: 1000 GKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNL- 1058
                                     E    L  H + F         N   + F   NL 
Sbjct: 292  ------------FGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLF 339

Query: 1059 --------SIYLHSPSVTDLSLA 1073
                    + Y  +P++T +SLA
Sbjct: 340  LGGCGNIPTAYGANPTLTAMSLA 362

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
           + L K     G  ++       + +N +    V  ++G+  D D+++
Sbjct: 68  EELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVM 114

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 718 GAGIGGIALAIRL-----QTAGISTIILEQRDKP--GGRAYV 752
           GAG  G+  A  L     Q   +   I+++R      G+A  
Sbjct: 14  GAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADG 55

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749
            D + I  G G GG   AI+    G  T  +E+R   GG 
Sbjct: 4   NDVVII--GGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
            D + I  G G  G   AI+    G +T  +E+R K GG
Sbjct: 6   HDVVII--GGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 39.2 bits (90), Expect = 0.003
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751
           G+G  G+A A+  + AG   I+LE+   PGG   
Sbjct: 30  GSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751
           G+G  G + AI    +G   I++E+    GG A 
Sbjct: 23  GSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1428
d1ezfa_	333	Squalene synthase {Human (Homo sapiens) [TaxId: 96	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.79
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.75
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.72
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.71
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.57
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.43
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.34
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.32
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.29
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.27
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.22
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.21
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.2
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.15
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.12
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.09
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.06
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.94
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.84
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.78
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.69
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.62
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.59
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.55
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.53
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.47
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.41
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.41
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.39
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.36
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.28
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.27
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.25
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.22
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.22
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.19
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.19
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.18
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.18
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.16
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.14
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.14
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.1
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.05
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.05
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.05
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.02
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.02
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.01
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.99
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.97
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.97
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.95
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.91
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.9
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.82
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.81
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.78
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.77
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.75
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.75
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.74
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.72
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.72
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.7
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.67
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.66
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.51
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.47
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.45
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.44
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.43
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.43
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.42
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.4
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.38
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.37
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.36
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.32
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.3
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.29
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.23
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.23
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.21
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.14
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.1
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.08
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.08
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.06
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.06
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.05
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.03
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.01
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.0
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.99
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.95
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.95
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.94
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.9
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.89
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.86
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	96.86
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.84
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.83
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.81
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.76
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.76
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	96.74
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.72
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.7
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	96.68
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.67
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	96.64
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.6
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.6
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.6
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	96.58
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.55
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	96.49
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.48
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.42
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.41
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	96.4
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.38
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.3
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.27
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.23
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.1
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.05
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.04
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.0
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.99
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.78
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.7
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.47
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.4
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.38
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.29
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.23
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.23
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.15
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.06
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.91
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.85
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.81
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.65
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.36
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.82
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.73
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.41
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.74
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.71
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.59
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.57
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.36
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.08
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.85
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.62
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.62
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.1
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.98
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.92
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.8
d1fpsa_	348	Farnesyl diphosphate synthase (geranyltranstransfe	90.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.9
d2q80a1	291	Geranylgeranyl pyrophosphate synthetase {Human (Ho	89.73
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.15
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	88.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.29
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.27
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.25
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.16
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	86.12
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	86.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	85.93
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.32
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	84.95
d1ps1a_	311	Pentalenene synthase {Streptomyces sp., UC5319 [Ta	84.8
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	84.24
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	83.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	83.57
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.27
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	82.94
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	82.61
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.38
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.07
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.32
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.45
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	80.13

>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Squalene synthase
domain: Squalene synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-39  Score=370.88  Aligned_cols=232  Identities=18%  Similarity=0.181  Sum_probs=195.3

Q ss_pred             ccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcC----CCCCcHH
Q psy10545       1189 GSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIG----FKMKEPA 1264 (1428)
Q Consensus      1189 sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~p~ 1264 (1428)
                      .+++++..+++||+++|.++++||+|||.+|||+|++..+..        .....|.+|++.+.....+    .+..+|+
T Consensus        13 ~SrSF~~a~~~Lp~~~R~~v~~lYafcR~~DdI~D~~~~~~~--------~k~~~L~~~~~~l~~~~~~~~~~~~~~~~l   84 (333)
T d1ezfa_          13 TSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVE--------KKVPLLHNFHSFLYQPDWRFMESKEKDRQV   84 (333)
T ss_dssp             HCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHH--------HHHHHHHHHHHHTTCTTCCCCCCCSTTHHH
T ss_pred             hCccHHHHHHHCCHHHHHHHHHHHHHHHHhhhhHhCCCCCHH--------HHHHHHHHHHHHHHHhhhcccccCcchHHH
Confidence            578899999999999999999999999999999998643221        2245688888877654332    2345667


Q ss_pred             HHHHHHHHHHc-------CCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCcc------chH
Q psy10545       1265 FLALQKIISIH-------SFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEK------DTL 1331 (1428)
Q Consensus      1265 ~~~l~~~~~~~-------~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~------~~~ 1331 (1428)
                      +.++..++..+       ..+...+.+++.++.+|....+|+|++||+.|||+|||+||+|+++++|..+.      +..
T Consensus        85 l~~~~~v~~~~~~l~~~~~~~i~~~~~~m~~gm~d~~~~~~~t~~dL~~Ycy~VAG~VG~~l~~l~~~~~~~~~~~~~~~  164 (333)
T d1ezfa_          85 LEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDT  164 (333)
T ss_dssp             HHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCH
T ss_pred             HhhccHHHHHHHHHHHHhccchHHHHHHHhccHHHHccCcCCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCccccHHHHH
Confidence            77666666654       23333344444555555566789999999999999999999999999987542      356


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10545       1332 NCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411 (1428)
Q Consensus      1332 ~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp 1411 (1428)
                      +.|++||+|||+||||||++||+++||||||+|+|.+||++++|+..+++.+++..++.+|+++|+.||++|++|+..||
T Consensus       165 ~~A~~lG~AlQltNIlRDi~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~~~~l~~~A~~~~~~a~~y~~~lp  244 (333)
T d1ezfa_         165 ERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLR  244 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhCCcEECCHHHHHHcCCCHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHhhhC
Q psy10545       1412 LRSTLAIVTSWSIYREI 1428 (1428)
Q Consensus      1412 ~~~~~a~~~a~~~y~~i 1428 (1428)
                      .++++++.++..+|+.|
T Consensus       245 ~~~~~~~~~~~~~~a~~  261 (333)
T d1ezfa_         245 NQSVFNFCAIPQVMAIA  261 (333)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHH
Confidence            99999999999999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.2e-19  Score=203.18  Aligned_cols=251  Identities=14%  Similarity=0.205  Sum_probs=153.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC------------------------CeEEccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD------------------------GFIFDAGPT  765 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~------------------------G~~~d~G~~  765 (1428)
                      ++|||||||||++||+||++|+++|++|+||||++++||+++|++.+                        ++.+|.+++
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   83 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPK   83 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccCcc
Confidence            57999999999999999999999999999999999999999997532                        345666666


Q ss_pred             ccCCchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHh
Q psy10545        766 VITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEG  845 (1428)
Q Consensus       766 ~i~~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  845 (1428)
                      .+...+.....+...+  ......+...+..  ..+.++....++......... ..........+..+......     
T Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----  153 (297)
T d2bcgg1          84 FLMANGELTNILIHTD--VTRYVDFKQVSGS--YVFKQGKIYKVPANEIEAISS-PLMGIFEKRRMKKFLEWISS-----  153 (297)
T ss_dssp             BEETTSHHHHHHHHHT--GGGTCCEEECCCE--EEEETTEEEECCSSHHHHHHC-TTSCHHHHHHHHHHHHHHHH-----
T ss_pred             cccCCCcceeeeeecc--ccccccccccCcc--cccccCCccccccchhhhhhc-cccccccchhhhhhhhhhhh-----
Confidence            6655544455554444  2333455554443  245566666666554332110 00001111122222211111     


Q ss_pred             hhhhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccc-cCCCCchhHHH---HHHHH-----
Q psy10545        846 YLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFI-GGNPFSTSSIY---TLIHA-----  916 (1428)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~-g~~p~~~s~~~---~~~~~-----  916 (1428)
                         +.......        ..... ....++.+++......+.++.++....... .......+...   .+..+     
T Consensus       154 ---~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (297)
T d2bcgg1         154 ---YKEDDLST--------HQGLD-LDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVA  221 (297)
T ss_dssp             ---CBTTBGGG--------STTCC-TTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHH
T ss_pred             ---hhhccccc--------hhhhc-ccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccc
Confidence               10000000        00000 124577888888877777777664322211 11111222211   11111     


Q ss_pred             hccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEc
Q psy10545        917 LEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSN  983 (1428)
Q Consensus       917 ~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A  983 (1428)
                      .....+.++++||++.++++|++.++++|++|++|++|++|..+  ++++++|+ .+|+++.||+||++
T Consensus       222 ~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         222 RYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIAD  289 (297)
T ss_dssp             HHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEEC
T ss_pred             ccccCcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEC
Confidence            11234677999999999999999999999999999999999886  35666665 57889999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-18  Score=203.79  Aligned_cols=271  Identities=16%  Similarity=0.147  Sum_probs=165.8

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL  790 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~  790 (1428)
                      ||||||||++||+||++|+++|++|+||||++++||+++|.+. +|+.+|.|++++.. .+.+.++++++|++...    
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~----   76 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYK----   76 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEE----
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCccee----
Confidence            8999999999999999999999999999999999999999875 68899999999875 34567889999864321    


Q ss_pred             EecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhh
Q psy10545        791 LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI  870 (1428)
Q Consensus       791 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  870 (1428)
                       ...........+...............      .........+.......... .  ....+...        .. ...
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~--------~~-~~~  137 (383)
T d2v5za1          77 -VNEVERLIHHVKGKSYPFRGPFPPVWN------PITYLDHNNFWRTMDDMGRE-I--PSDAPWKA--------PL-AEE  137 (383)
T ss_dssp             -CCCSSEEEEEETTEEEEECSSSCCCCS------HHHHHHHHHHHHHHHHHHTT-S--CTTCGGGS--------TT-HHH
T ss_pred             -ccCccceEEecCcccccccccccchhh------hhhhhhHHHHHHHHHHhhhh-c--ccccccch--------hh-hhh
Confidence             111111122222223222211100000      00000111111111111111 0  00000000        00 011


Q ss_pred             cccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhHHHHHHHH-----------hccccceeeecCchHHHHHHHH
Q psy10545        871 KAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTLIHA-----------LEYEWGIWFPKGGVGALIKALI  938 (1428)
Q Consensus       871 ~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~~~~~~~~-----------~~~~~g~~~~~gG~~~l~~~L~  938 (1428)
                      ....++.+++.+....+....+.... ....+..+...+........           .......+.+.+|++.+.+.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  217 (383)
T d2v5za1         138 WDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIM  217 (383)
T ss_dssp             HHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHH
T ss_pred             hhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHHHH
Confidence            12567888888887777776655532 22233444444432221110           0111234678899999998886


Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcC
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKK 1011 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~ 1011 (1428)
                      +   +.|++|++|++|++|..++++ +.|++.||+++.||+||+|+|+..+.+ +...+.+|.++.+.+.++.
T Consensus       218 ~---~~g~~i~~~~~v~~I~~~~~~-v~v~~~~g~~~~ad~vI~a~p~~~~~~-~~~~p~l~~~~~~~~~~~~  285 (383)
T d2v5za1         218 D---LLGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMK-IHFNPPLPMMRNQMITRVF  285 (383)
T ss_dssp             H---HHGGGEEESCCEEEEECSSSS-EEEEETTSCEEEESEEEECSCGGGGGG-SEEESCCCHHHHHHTTSCC
T ss_pred             H---HcCCeEEecCcceEEEecCCe-EEEEECCCCEEECCEEEECCCHHHHhh-CccCCCCCHHHHHHHHHhc
Confidence            5   458999999999999988887 568999999999999999998776543 5555667877766665543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.75  E-value=1.1e-17  Score=192.60  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=65.7

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNR  783 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~  783 (1428)
                      +||+|||||++||+||++|+++|++|+||||++++||+++|++.+|+.+|.|++++.. ...+.+++++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~   73 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLE   73 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCG
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhccc
Confidence            4899999999999999999999999999999999999999999999999999999875 34667888888753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.72  E-value=5.8e-17  Score=189.17  Aligned_cols=274  Identities=18%  Similarity=0.137  Sum_probs=152.4

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--CCeEEcccccccCC-chHHHHHHHHhccccc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--DGFIFDAGPTVITD-PNSIKLLFDLSKNRME  785 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~  785 (1428)
                      .+.++|+|||||++||+||++|+++|++|+|||+++++||++.|++.  .|+.+|.|++++.. ...+.+++++++.+..
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~  107 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  107 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHhCCccc
Confidence            34579999999999999999999999999999999999999999876  47999999998865 4456778888875432


Q ss_pred             ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhh-Cccc----HHHHHHH-HHHHHHHHHHhhhhhcccCcccHHH
Q psy10545        786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKF-NLND----IKGYRLF-LNYSKKVFKEGYLSFASKSFLTIND  859 (1428)
Q Consensus       786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~p~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  859 (1428)
                      .   +....... ..+.++......    ......... ....    ......+ ..........    +...       
T Consensus       108 ~---~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------  168 (370)
T d2iida1         108 E---FSQENDNA-WYFIKNIRKKVG----EVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEE----LKRT-------  168 (370)
T ss_dssp             E---ECSCCTTS-EEEETTEEEEHH----HHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHH----HHHS-------
T ss_pred             e---eeccCCce-EEecCCccccch----hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH----HHhh-------
Confidence            1   11111111 222223222211    000000000 0000    0000000 0000100000    0000       


Q ss_pred             HHHhhHHHHhhcccCCHHHHHHhhcC-CHHHHHHHHhhcccccCCCCchhH--HHHHHHHhccccceeeecCchHHHHHH
Q psy10545        860 MLFILPKLIKIKAWKSVYSIVSQFIK-NDYLKQAFSFNSLFIGGNPFSTSS--IYTLIHALEYEWGIWFPKGGVGALIKA  936 (1428)
Q Consensus       860 ~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~l~~~~~~~g~~p~~~s~--~~~~~~~~~~~~g~~~~~gG~~~l~~~  936 (1428)
                         ............+..+++..... .......+......  ......+.  ................+.+|+..+++.
T Consensus       169 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  243 (370)
T d2iida1         169 ---NCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE--DSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTA  243 (370)
T ss_dssp             ---CHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC--GGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHHHHH
T ss_pred             ---hhhhhhhhccchhHHHHHHHhccccHHHHHHhhccccc--cchhhhHHHhhhhhhhhhccccccccchhhHHHHHHH
Confidence               00111111124455555555433 33333222211110  00111111  112222333344566889999999998


Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEE-Ee--cCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhc
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKV-HL--KNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V-~~--~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~ 1010 (1428)
                      |++   +.|++|++|++|++|..+++++..+ ..  .++++++||+||+|+|+..+. .+.-.+++|..+.++++.+
T Consensus       244 l~~---~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~-~i~~~p~l~~~~~~ai~~~  316 (370)
T d2iida1         244 MYR---DIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR-LIKFNPPLLPKKAHALRSV  316 (370)
T ss_dssp             HHH---HTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT-TSEEESCCCHHHHHHHHHC
T ss_pred             HHH---hcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHh-hCccCCCCCHHHHHHHHhc
Confidence            854   5689999999999999998874422 22  234689999999999876543 3444566777776666554

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.7e-16  Score=181.42  Aligned_cols=92  Identities=28%  Similarity=0.459  Sum_probs=78.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC--chHHHHHHHHhccccccc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKLLFDLSKNRMENY  787 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~--~~~~~~l~~~lG~~l~~~  787 (1428)
                      ++.+|||||||+|||+||++|+++|++|+|||+++++|||++|++.+|+.+|.|++++++  .+.+.++++++|++    
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~----   79 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME----   79 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCC----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCc----
Confidence            457899999999999999999999999999999999999999999999999999999975  34678899999964    


Q ss_pred             ceEEecCCceEEEeCCCcEE
Q psy10545        788 VNLLPIKPFYRLYWGKEKFL  807 (1428)
Q Consensus       788 l~~~~~~~~~~~~~~~g~~~  807 (1428)
                        ..+.++....++.+|+.+
T Consensus        80 --~~~~~~~~~~~~~~g~~~   97 (449)
T d2dw4a2          80 --LAKIKQKCPLYEANGQAV   97 (449)
T ss_dssp             --EEECCCCCCEECTTSCBC
T ss_pred             --ceecCCCceEEecCCcEe
Confidence              344455555666666543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.57  E-value=1.1e-14  Score=167.54  Aligned_cols=72  Identities=32%  Similarity=0.569  Sum_probs=66.3

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNR  783 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~  783 (1428)
                      ++|+|||||++||+||++|+++|++|+|||+++++||+++|++.+|+.+|.|++++.. ...+.+++++++..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~   74 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLR   74 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeCCCHHHHHHHHHhCCc
Confidence            5799999999999999999999999999999999999999999999999999999975 45677888888853

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.51  E-value=1.7e-15  Score=170.80  Aligned_cols=58  Identities=36%  Similarity=0.511  Sum_probs=54.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD  769 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~  769 (1428)
                      +||+|||||++||+||++|+++|+ +|+||||++++||+++|++.+|+.+|.|++++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~   59 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEG   59 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEec
Confidence            489999999999999999999996 6999999999999999999999999999998863

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.43  E-value=1.3e-13  Score=156.98  Aligned_cols=226  Identities=15%  Similarity=0.210  Sum_probs=137.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE---eCCeEEcccccccCCc-hHHHHHHHHhcccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK---QDGFIFDAGPTVITDP-NSIKLLFDLSKNRMEN  786 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~---~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~  786 (1428)
                      +++|+|||||++||+||+.|+++|++|+|+|+++++||+++|..   .+++.++.|+|.++.. ..+.+.+..+.     
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~~~-----   76 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHA-----   76 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTS-----
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHHhh-----
Confidence            57899999999999999999999999999999999999999986   3578999999998743 33344444332     


Q ss_pred             cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545        787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK  866 (1428)
Q Consensus       787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1428)
                        ++.+...... ...+|+.+.+|.+............  .......+.       ..    .....             
T Consensus        77 --~~~~~~~~~~-~~~~g~~~~~P~~~~~i~~~~~~~~--~~~~~~~~~-------~~----~~~~~-------------  127 (314)
T d2bi7a1          77 --EMMPYVNRVK-ATVNGQVFSLPINLHTINQFFSKTC--SPDEARALI-------AE----KGDST-------------  127 (314)
T ss_dssp             --CEEECCCCEE-EEETTEEEEESCCHHHHHHHTTCCC--CHHHHHHHH-------HH----HSCCS-------------
T ss_pred             --hhhhhccccc-eeecceeeccCccHHHHHHhccccc--chHHHHHHH-------HH----hhhcc-------------
Confidence              3444433333 3346788888776544322211111  111111110       00    00000             


Q ss_pred             HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHHH-HH----HHhcc--ccc-eeeecCchHHHHHHH
Q psy10545        867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIYT-LI----HALEY--EWG-IWFPKGGVGALIKAL  937 (1428)
Q Consensus       867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~~-~~----~~~~~--~~g-~~~~~gG~~~l~~~L  937 (1428)
                         .....+..+++.+.++......++. .....||.+|.+.+.... .+    ..-..  ... ..+|++|..++.+.|
T Consensus       128 ---~~~~~n~ee~~~~~~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~Gyt~~~e~m  204 (314)
T d2bi7a1         128 ---IADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSI  204 (314)
T ss_dssp             ---CSSCCBHHHHHHHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHH
T ss_pred             ---cCCchhhhHHHHHhchhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccccchhhheeecccHHHHHHHH
Confidence               1123466677766666665666555 344556776666553110 00    00000  001 147899999988877


Q ss_pred             HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545        938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~  991 (1428)
                      .   ...+++|.+|+.+               .+++...+|+||.|+|+...+.
T Consensus       205 L---~~~~i~v~ln~~~---------------~~~~~~~~d~vI~TgpiD~~f~  240 (314)
T d2bi7a1         205 L---NHENIKVDLQREF---------------IVEERTHYDHVFYSGPLDAFYG  240 (314)
T ss_dssp             H---CSTTEEEEESCCC---------------CGGGGGGSSEEEECSCHHHHTT
T ss_pred             H---hCCCCeeeccccc---------------cccccccceeEEEeccHHHHhc
Confidence            4   3456888888763               1344567899999998876554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.34  E-value=2.2e-12  Score=144.86  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=54.6

Q ss_pred             eeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        923 IWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       923 ~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      .+.+.+|   ...++..|.+.++++|++|+++++|++|..++++ +.|.+++| ++.||+||+|++++.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEEEEEECCGGGH
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEECCE-EEEEECCc-EEEcCEEEECCCCcc
Confidence            3444444   3678999999999999999999999999999988 67999888 699999999998874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.32  E-value=3.2e-13  Score=157.60  Aligned_cols=50  Identities=22%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHh-----hcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHH
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQ-----TAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSII  371 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La-----~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~  371 (1428)
                      .+|++|+|+||+|+++|..||     ++|++|+|+|+++.+           ....+|.+|++..+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~-----------~~~~r~~~l~~~~~   61 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK-----------VYNGQADGLQCRTL   61 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC-----------CCSCSCCEECHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC-----------CcCCeEEEECHHHH
Confidence            368999999999999999997     579999999999877           55667777776544

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.1e-12  Score=148.06  Aligned_cols=227  Identities=16%  Similarity=0.188  Sum_probs=128.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE-EcccccccCC-chHHHHHHHHhcccccccc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI-FDAGPTVITD-PNSIKLLFDLSKNRMENYV  788 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~-~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l  788 (1428)
                      |+||||||||+|||+||++|+++|++|+|+|+++++||+++|....|+. ++.|+|.++. ...+.+++....       
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~-------   73 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLV-------   73 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTS-------
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEecchHHHHHhhccc-------
Confidence            6899999999999999999999999999999999999999999999976 4889999875 334444444332       


Q ss_pred             eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHH
Q psy10545        789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLI  868 (1428)
Q Consensus       789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1428)
                      .+.+...... ...+|+.+.+|.+...+......   ........++...       ......                 
T Consensus        74 ~~~~~~~~~~-~~~~~~~~~~P~~~~~i~~l~~~---~~~~~~~~~i~~~-------~~~~~~-----------------  125 (298)
T d1i8ta1          74 EFNRFTNSPL-AIYKDKLFNLPFNMNTFHQMWGV---KDPQEAQNIINAQ-------KKKYGD-----------------  125 (298)
T ss_dssp             CBCCCCCCCE-EEETTEEEESSBSHHHHHHHHCC---CCHHHHHHHHHHH-------TTTTCC-----------------
T ss_pred             cceeeccccc-eeeeceeEEecccHHHHHHhhhh---hcHHHHHHHHHHH-------Hhhccc-----------------
Confidence            1222222222 23367788887665443222211   1111111111110       000000                 


Q ss_pred             hhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHH-HHHHH-Hhc------cccceeeecCchHHHHHHHHH
Q psy10545        869 KIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSI-YTLIH-ALE------YEWGIWFPKGGVGALIKALIK  939 (1428)
Q Consensus       869 ~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~-~~~~~-~~~------~~~g~~~~~gG~~~l~~~L~~  939 (1428)
                        ....+..++..+.++....+.++. +....||.+|.+.+.. ...+. ...      ...-...|++|+..+.+.+.+
T Consensus       126 --~~~~n~ee~~~~~~G~~lye~ff~~Yt~K~Wg~~p~eL~~~~~~ripir~~~~~~yf~d~~q~~pk~Gyt~~~~~~l~  203 (298)
T d1i8ta1         126 --KVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE  203 (298)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT
T ss_pred             --ccchhHHHHHHHhhchhHHHhcccchhhhccccCcccccccccccccccccccchhhhcceEEEEecccchHHHHHhc
Confidence              112344555544444444444443 2334456666554421 00000 000      011135689999998888864


Q ss_pred             HHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545        940 LFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR  991 (1428)
Q Consensus       940 ~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~  991 (1428)
                           +.+|++++.-.     ..+       +.....+|.||.|.|+.....
T Consensus       204 -----~~~i~l~~~~~-----~~~-------~~~~~~~~~vi~tg~iD~~f~  238 (298)
T d1i8ta1         204 -----GVDVKLGIDFL-----KDK-------DSLASKAHRIIYTGPIDQYFD  238 (298)
T ss_dssp             -----TSEEECSCCGG-----GSH-------HHHHTTEEEEEECSCHHHHTT
T ss_pred             -----CCceEeccccc-----chh-------hhhhccCCeEEEcCcHHHhhc
Confidence                 57777765311     011       111235788999997776543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.27  E-value=8.3e-12  Score=137.48  Aligned_cols=59  Identities=20%  Similarity=0.345  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      ....+.+.|.+.+++.|++|+++++|++|..+++++.+|.+++|+++.||.||+|++..
T Consensus       108 ~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~  166 (251)
T d2i0za1         108 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGK  166 (251)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCS
T ss_pred             cHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCc
Confidence            34678899999999999999999999999999999889999999999999999999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.22  E-value=3.6e-11  Score=136.50  Aligned_cols=58  Identities=26%  Similarity=0.319  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      ...++..|.+.+++.|++|+.+++|++|..+++++++|.+++| ++.||+||+|++.+.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH
Confidence            4678899999999999999999999999999999999999888 799999999998874

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=7.8e-12  Score=145.75  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             ccCCCChHHHHHHHhcCCchHHHHHHHHhh------cCCeEEEEcCCCCCcccccccccCCCCcccCcchhH
Q psy10545        303 YANKLSFFDKIRIFSGAGIGGIALAIRLQT------AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWN  368 (1428)
Q Consensus       303 l~~~~~~~~~~~ii~g~~~~~~~~a~~La~------~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~  368 (1428)
                      .+++....++|+||+|+||+|+++|+.|||      +|++|+||||...+           |.++||||+..
T Consensus        24 ~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p-----------G~k~~~Ggvl~   84 (380)
T d2gmha1          24 VNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI-----------GAHTLSGACLD   84 (380)
T ss_dssp             CCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST-----------TTTCCCCCEEC
T ss_pred             cCcccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC-----------CCCcccccccc
Confidence            344444467899999999999999999998      89999999999988           99999999764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=3.2e-10  Score=131.82  Aligned_cols=199  Identities=13%  Similarity=0.117  Sum_probs=123.8

Q ss_pred             cccccccCCchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q psy10545        761 DAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKK  840 (1428)
Q Consensus       761 d~G~~~i~~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~  840 (1428)
                      |+.+..+...+.+-+++-.-+  +.++++|...+..  +.+.+|+...+|.+..+.... ..+...++..+.+|+..+..
T Consensus       225 DL~Pk~l~a~g~lv~~Li~S~--v~rYlEFk~v~~~--~v~~~g~~~~VP~sr~eif~s-~~l~l~eKR~lmkFl~~v~~  299 (491)
T d1vg0a1         225 DLVSKLLYSRGLLIDLLIKSN--VSRYAEFKNITRI--LAFREGTVEQVPCSRADVFNS-KQLTMVEKRMLMKFLTFCVE  299 (491)
T ss_dssp             ESSCCCEESSSHHHHHHHHHT--GGGGCCEEECCEE--EEESSSSEEECCCSHHHHHHC-SSSCHHHHHHHHHHHHHHHT
T ss_pred             cccchheecccHHHHHHHHcC--hhhheeEEEeceE--EEecCCeEEECCCCHHHHhcC-CCCCHHHHHHHHHHHHHHhh
Confidence            334444433334444555554  5678889888754  467788888888876543211 00112244555555554432


Q ss_pred             HHHHhhhhhcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHHHHHhc-
Q psy10545        841 VFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTLIHALE-  918 (1428)
Q Consensus       841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~~~~~~-  918 (1428)
                      ...            .        ++.+.-....++.+++..+.-.+.+..++.. .+.+.........++..+..|+. 
T Consensus       300 ~~~------------~--------~~~~~~~~~~~~~e~l~~~~l~~~~~~~i~~aial~~~~~~~~~~~l~ri~~yl~S  359 (491)
T d1vg0a1         300 YEE------------H--------PDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTSCTVDGLKATKKFLQC  359 (491)
T ss_dssp             GGG------------C--------HHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTTC--CCSCBHHHHHHHHHHHHHH
T ss_pred             ccC------------C--------ccccccccCCcHHHHHHHcCCChHHHHHHHhheeccCCCCccHHHHHHHHHHHHHH
Confidence            110            1        1122223478899999988778777776652 33222211111223333333332 


Q ss_pred             --cc--cceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEcC
Q psy10545        919 --YE--WGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       919 --~~--~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A~  984 (1428)
                        ..  ....+|..|.+.|++++.+...-.|+...+|++|++|.++  ++++.+|...+|+++.+++||+..
T Consensus       360 lg~yG~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         360 LGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             TTSSSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             HHhhCCCCeEeecCCcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence              11  1234888899999999999999999999999999999985  567888999999999999999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.15  E-value=2.3e-11  Score=135.98  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545        922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN  988 (1428)
Q Consensus       922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~  988 (1428)
                      +.+.+.+|   ...++..|.+.++++|++|+.+++|++|..+++ +++|++++| ++.||.||+|++++.
T Consensus       139 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         139 ASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE-ALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             EEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSS-SEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             EEEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEeecc-eEEEecCCe-EEEcCEEEECCCccH
Confidence            34444444   467889999999999999999999999987655 588999888 799999999998874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=1.2e-10  Score=127.96  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=52.3

Q ss_pred             ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe--EEEEEecCCcEEEcCEEEEcCCH
Q psy10545        922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNK--VNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~--v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      +.+++......+.+.|.+.+++.|++|+++++|++|...++.  +..+...+++++.||.||+|++-
T Consensus       100 ~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG  166 (253)
T d2gqfa1         100 GQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGG  166 (253)
T ss_dssp             TEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCC
T ss_pred             CccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCc
Confidence            445666667889999999999999999999999999886542  23344567789999999999973

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.09  E-value=2.6e-11  Score=136.01  Aligned_cols=151  Identities=18%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCC-eEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS  391 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~-~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s  391 (1428)
                      +++|+|+||+|+++|+.|+++|+ +|+|+|+++.+           +...+|-+|.+..  .+...              
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~-----------~~~g~~i~l~~~~--~~~l~--------------   55 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI-----------RPLGVGINIQPAA--VEALA--------------   55 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC-----------CCCSCEEEECHHH--HHHHH--------------
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC-----------CCCceEEEECHHH--HHHHH--------------
Confidence            46899999999999999999996 99999998765           2122233333322  12111              


Q ss_pred             CCCCceeeeccCCcCcccccccccccccccCcc-EEEcCCCcc-cccccceeeechHHHHHHHHHhcc--CC-eEEecce
Q psy10545        392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-QVKFPKFNR-KIFSGYYSICSKHLNSYLIRALGI--NN-FLFNNKT  466 (1428)
Q Consensus       392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~~~--~~-~~~~~~~  466 (1428)
                           .|+.++ .+. ....+..........+. ...++.... ......+...+......+...+.+  .+ .+..+++
T Consensus        56 -----~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (288)
T d3c96a1          56 -----ELGLGP-ALA-ATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLG  128 (288)
T ss_dssp             -----HTTCHH-HHH-HHSEEECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEE
T ss_pred             -----HcCchh-hhH-hhhcccccceeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcE
Confidence                 111111 010 00111111111111121 111222111 122344555666666655555533  23 5777788


Q ss_pred             EEEEeC--Ce--EEEcCC----cEEEeeEEEecCCCCCC
Q psy10545        467 VEIITP--TS--IRINNK----KIINANCIIDGRGLKNS  497 (1428)
Q Consensus       467 v~~i~~--~~--v~l~~g----~~~~a~lvI~AdG~~S~  497 (1428)
                      ++.+..  +.  |++.||    +++++++||+|||.+|.
T Consensus       129 v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~  167 (288)
T d3c96a1         129 VERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSA  167 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             EEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccce
Confidence            877753  33  555554    47999999999999953

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.06  E-value=1e-11  Score=140.14  Aligned_cols=152  Identities=12%  Similarity=0.069  Sum_probs=90.2

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      +++|+|+||+|+++|+.|+++|++|+|||+++......         ..++..+.+..                     .
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~---------~~~~~~l~~~~---------------------~   53 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLG---------RIRAGVLEQGM---------------------V   53 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHT---------CCCCCEECHHH---------------------H
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC---------CceEEEECHHH---------------------H
Confidence            57899999999999999999999999999987431000         11222333322                     1


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-e-EEecceEEEE
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-F-LFNNKTVEII  470 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~-~~~~~~v~~i  470 (1428)
                      ..+..|++|+ .+. ....+...+..+.+.. ....+..........+.+.+..+.+.|.+.+.+.+ . .+....+..+
T Consensus        54 ~~l~~lg~~~-~l~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~  130 (292)
T d1k0ia1          54 DLLREAGVDR-RMA-RDGLVHEGVEIAFAGQ-RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLH  130 (292)
T ss_dssp             HHHHHTTCCH-HHH-HHCEEESCEEEEETTE-EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred             HHHHHcCchH-HHH-hhcccccceEEEeccc-ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeee
Confidence            1222233333 111 1222333333332221 22221112233456788999999999999998765 4 4444555555


Q ss_pred             eCCe----EEEc-CCc--EEEeeEEEecCCCCCC
Q psy10545        471 TPTS----IRIN-NKK--IINANCIIDGRGLKNS  497 (1428)
Q Consensus       471 ~~~~----v~l~-~g~--~~~a~lvI~AdG~~S~  497 (1428)
                      ..+.    |++. +|+  +++|++||+|||.+|.
T Consensus       131 ~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~  164 (292)
T d1k0ia1         131 DLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (292)
T ss_dssp             CTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             eeccCceEEEEecCCcEEEEEeCEEEECCCCCCc
Confidence            5332    5543 554  5889999999999964

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.94  E-value=3.6e-09  Score=119.79  Aligned_cols=58  Identities=14%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecC--C--cEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKN--G--QIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~--G--~~i~ad~VV~A~~~~  987 (1428)
                      ...+...+.+.+.+.|++|+++++|+++..++ +++++|.+.+  +  .++.|+.||+|++-.
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  206 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  206 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcc
Confidence            45688888999999999999999999998865 6888988743  3  258899999999754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=2.5e-09  Score=119.59  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=39.9

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++...||||||||++||++|++|+++|.+|+|||+++.+||.-
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW   46 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   46 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc
Confidence            4567999999999999999999999999999999999999853

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.84  E-value=6.8e-09  Score=118.20  Aligned_cols=58  Identities=26%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecC--C--cEEEcCEEEEcCCHH
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKN--G--QIFDADIIVSNADII  987 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~--G--~~i~ad~VV~A~~~~  987 (1428)
                      ...+.+.|.+.+.++|++|+++++|++|..+ +++|++|...+  +  ..+.|+.||+|++-.
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~  213 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  213 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCc
Confidence            4678889999999999999999999999885 56888887642  3  258999999999743

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.78  E-value=3.3e-08  Score=112.01  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEec--CCc--EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHLK--NGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~~--~G~--~i~ad~VV~A~~~~  987 (1428)
                      ..+...|.+.+++.|++++++++|+++.. +++++.+|...  +++  .+.|+.||+|++..
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence            46889999999999999999999999977 46688888764  343  57899999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.69  E-value=5e-08  Score=107.24  Aligned_cols=48  Identities=6%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNL  993 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~L  993 (1428)
                      +.+++++++|++|..++++ +.|+++||+++.+|.+|.|.+.....+..
T Consensus       110 ~~~~~~~~~v~~~~~~~~~-v~v~~~dG~~~~~d~~v~adG~~s~~r~~  157 (265)
T d2voua1         110 PERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGASVVRKR  157 (265)
T ss_dssp             STTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTCHHHHH
T ss_pred             cceeecCcEEEEEEeeCCc-eEEEECCCCEEEEEEEecccccccccccc
Confidence            5789999999999988776 67889999999999999999877665543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.62  E-value=2.1e-08  Score=114.69  Aligned_cols=42  Identities=26%  Similarity=0.305  Sum_probs=37.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~  751 (1428)
                      .+++|+|||||+|||+||..|++.|  ++|+|+||++.+||.-.
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~   46 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN   46 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccc
Confidence            4578999999999999999998876  69999999999999754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.59  E-value=3.1e-07  Score=104.72  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHH
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~  987 (1428)
                      ..+..+|.+.+++.|++|+.+++|.++..+++++.++..   .+|+  ++.|+.||+|++..
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccc
Confidence            567888999999999999999999999999999887765   3564  47899999998653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.55  E-value=4.2e-08  Score=113.92  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             HHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe--c--CC-----cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        939 KLFQNLG-GNLILNSQVISIYVNNNKVNKVHL--K--NG-----QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       939 ~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~--~--~G-----~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+++.| ++|+++++|++|..++++.++|..  .  ++     +++.||.||+|++...+.+.|+.
T Consensus       230 ~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~  296 (370)
T d3coxa1         230 AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVS  296 (370)
T ss_dssp             HHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHHHh
Confidence            3344455 799999999999998876555543  2  22     35889999999999888876654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.5e-07  Score=87.15  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      .+.+.++++|+++++|+.|++|..+++..+.|.+++|+++.+|.||+|++
T Consensus        67 ~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          67 TLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            34455677799999999999998876554678899999999999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.47  E-value=5e-07  Score=87.24  Aligned_cols=49  Identities=20%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      +.+.++++|+++++|+.|++|...  ++++..|.+++|+++.||.||+|++
T Consensus        83 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          83 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            344567789999999999999875  4567789999999999999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.41  E-value=8.8e-08  Score=110.96  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             HHHHHcC-cEEEeCceeeEEEEeCCe--EEEEEec--CC-----cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        939 KLFQNLG-GNLILNSQVISIYVNNNK--VNKVHLK--NG-----QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       939 ~~l~~~G-~~V~~~~~V~~I~~~~~~--v~~V~~~--~G-----~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..+++.| .+|++++.|++|..++++  .++|+..  ++     +++.|+.||+|++...+.+.|+.
T Consensus       226 ~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~  292 (367)
T d1n4wa1         226 AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVR  292 (367)
T ss_dssp             HHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHHHh
Confidence            3445566 899999999999998654  3445442  22     36889999999999888886654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=7.2e-08  Score=97.80  Aligned_cols=43  Identities=26%  Similarity=0.401  Sum_probs=39.6

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ..+.++|+|||||++||+||+.|+++|++|+|+|+.+.+||..
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l   82 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF   82 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceE
Confidence            3456899999999999999999999999999999999999954

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.39  E-value=2.7e-07  Score=101.24  Aligned_cols=140  Identities=15%  Similarity=0.115  Sum_probs=77.9

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSV  393 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~~  393 (1428)
                      ++|+|+||.|+++|+.|+++|++|+|+|+++.+           . ...|+|+.............              
T Consensus         7 V~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~-----------~-~~~~~g~~~~~~~~~~l~~~--------------   60 (265)
T d2voua1           7 IAVVGGSISGLTAALMLRDAGVDVDVYERSPQP-----------L-SGFGTGIVVQPELVHYLLEQ--------------   60 (265)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-----------C-CCCSCEEECCHHHHHHHHHT--------------
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC-----------C-CCCceEEEECccHHHHHHHc--------------
Confidence            679999999999999999999999999998754           1 22344543332222221111              


Q ss_pred             CCceeeeccCCcCcccccccccccccccCccEEEcCCCccc--ccccceeeechHHHHHHHHHhccCCeEEecceEEEEe
Q psy10545        394 KNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRK--IFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIIT  471 (1428)
Q Consensus       394 ~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~  471 (1428)
                           +.+. +.   ...+.....       ...+......  ............+...+...... ..++.+.+|+++.
T Consensus        61 -----g~~~-~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  123 (265)
T d2voua1          61 -----GVEL-DS---ISVPSSSME-------YVDALTGERVGSVPADWRFTSYDSIYGGLYELFGP-ERYHTSKCLVGLS  123 (265)
T ss_dssp             -----TCCG-GG---TCBCCCEEE-------EEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCS-TTEETTCCEEEEE
T ss_pred             -----Ccch-hh---hccCCCcce-------eEeccCCceecccccccccchhHHHHHHHHHhccc-ceeecCcEEEEEE
Confidence                 1010 00   000111111       1111111110  01122223333333333333221 2578899999987


Q ss_pred             CCe----EEEcCCcEEEeeEEEecCCCCC
Q psy10545        472 PTS----IRINNKKIINANCIIDGRGLKN  496 (1428)
Q Consensus       472 ~~~----v~l~~g~~~~a~lvI~AdG~~S  496 (1428)
                      ...    ++++||.+++++++|+|||.+|
T Consensus       124 ~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1         124 QDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             ECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             eeCCceEEEECCCCEEEEEEEeccccccc
Confidence            432    6778999999999999999884

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=5.7e-07  Score=94.04  Aligned_cols=42  Identities=14%  Similarity=0.163  Sum_probs=36.2

Q ss_pred             CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545        945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII  987 (1428)
Q Consensus       945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~  987 (1428)
                      +.+|+ ...|.++..+++++++|++.+|.++.|+.||+|++..
T Consensus        82 nL~i~-q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHH-hccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            45666 4468999999999999999999999999999999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=2.9e-06  Score=93.66  Aligned_cols=51  Identities=20%  Similarity=0.195  Sum_probs=40.2

Q ss_pred             cCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545        944 LGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       944 ~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      .+..+.+++.|+.+..++++ +.|.+.+|    +++.+|.||.|-+.....+....
T Consensus       119 ~~~~~~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~  173 (288)
T d3c96a1         119 GQQAVRTGLGVERIEERDGR-VLIGARDGHGKPQALGADVLVGADGIHSAVRAHLH  173 (288)
T ss_dssp             CTTSEEESEEEEEEEEETTE-EEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHC
T ss_pred             cCeeeecCcEEEEeeecCCc-EEEEEEcCCCCeEEEeeceeeccCCccceeeeeec
Confidence            46889999999999998887 45666655    47899999999988766654443

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.1e-06  Score=98.62  Aligned_cols=43  Identities=26%  Similarity=0.395  Sum_probs=36.5

Q ss_pred             cccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        707 LSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       707 ~~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+...+||||||+|+|||+||..+++.| +|+||||.+..||.+
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            4556799999999999999999999988 999999999887753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.27  E-value=1.8e-07  Score=107.67  Aligned_cols=70  Identities=13%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC-----Cc--EEEc-CEEEEcCCHHHHHHHhcCCCCCChhHHHH
Q psy10545        937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN-----GQ--IFDA-DIIVSNADIINTYRNLLGQYAFGKKKYMN 1006 (1428)
Q Consensus       937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~-----G~--~i~a-d~VV~A~~~~~~~~~Ll~~~~~p~~~~~~ 1006 (1428)
                      |...+...+.+|++++.|++|..+++++++|++.+     +.  ++.| +.||++++...+.+.|+..-.-|...++.
T Consensus       197 l~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~  274 (360)
T d1kdga1         197 LQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT  274 (360)
T ss_dssp             HHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHH
T ss_pred             hhhhhcccccccccCcEEEEEEEeCCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHH
Confidence            33333333579999999999999999999999854     22  3444 45999999999888777666666665444

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.27  E-value=4.2e-08  Score=107.05  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~~  498 (1428)
                      ....+.+.|.+++++.| .++.+++|++|..  +.   |++.+|++++||.||.|+|..|.+
T Consensus       108 ~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         108 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred             cHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcccc
Confidence            34667888999998888 6888999998863  22   678899999999999999999653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=1.1e-07  Score=105.42  Aligned_cols=53  Identities=25%  Similarity=0.538  Sum_probs=44.0

Q ss_pred             hhhhccCccccccceeeecCCCcchHHHHHHHHh-CCCeEEEEccCCCCCCcce
Q psy10545        699 IRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQT-AGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       699 l~~f~~~~~~~~~~dViIIGaGiaGLsAA~~La~-~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .++.+.......++||+|||||++||+||++|++ .|++|+|+|+++.+||.+.
T Consensus        21 ~~~~~~~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          21 TRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             HHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             HHhhhcccccccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            3344444445567999999999999999999987 5999999999999999765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=5.5e-06  Score=77.89  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+++|||||..|+-+|..|++.|.+|+|+|++++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            36899999999999999999999999999999765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.23  E-value=3.5e-06  Score=79.00  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEE-cCEEEEcC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFD-ADIIVSNA  984 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~-ad~VV~A~  984 (1428)
                      .+.+.++++|+++++++.|++|...+++.+.|++.+|+++. +|.||+|+
T Consensus        68 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          68 VLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            44556777899999999999998765544778999998874 69999985

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.22  E-value=3e-06  Score=80.02  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=32.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+++|||||+.|+-+|..|++.|++|+|+|++++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            46899999999999999999999999999999765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=9.1e-07  Score=99.36  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             HHHHH-HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHH
Q psy10545        932 ALIKA-LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADII  987 (1428)
Q Consensus       932 ~l~~~-L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~  987 (1428)
                      .+... +.+..+..|++|+.+++|+++..+++++++|..   .+|+  .+.|+.||+|++-.
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            34444 444445557999999999999999999888764   4664  45899999999754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.19  E-value=5e-06  Score=78.17  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      .+.+.++++|++|++|+.|++|..+++++..|.+++|+++.||.||+|++
T Consensus        67 ~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          67 QLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            34556788899999999999998876656789999999999999999985

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=2.1e-07  Score=99.93  Aligned_cols=41  Identities=29%  Similarity=0.427  Sum_probs=39.1

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++|||+|||||++||+||.+|++.|++|+|+|+++.+||.+
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~   44 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC   44 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEe
Confidence            57999999999999999999999999999999999999866

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.18  E-value=7.2e-06  Score=77.19  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC---cEEEcCEEEEcCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADIIVSNAD  985 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G---~~i~ad~VV~A~~  985 (1428)
                      .+.+.++++|++|+++++|++|..++++ ..|++.++   +++.||.||+|+|
T Consensus        68 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          68 EAQKILTKQGLKILLGARVTGTEVKNKQ-VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSSC-EEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHHHHHhcCceeecCcEEEEEEEeCCE-EEEEEEECCCCEEEECCEEEEeeC
Confidence            3455677889999999999999998876 44555443   5799999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.1e-06  Score=80.48  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=43.0

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      .+.+.++++|+++++|+.|++|..++++ ..|+++||+++.||.||+|+|
T Consensus        88 ~~~~~l~~~GV~~~~~~~V~~i~~~~~~-~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          88 WTMEKVRREGVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHTTTCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHhCCcEEEeCCEEEEEEecCCE-EEEEECCCCEEECCEEEEeec
Confidence            3455677889999999999999998887 569999999999999999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.16  E-value=4.3e-06  Score=79.25  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+|+|||||+.|+-+|..|++.|++|+|+|+.++
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            46899999999999999999999999999999764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=2.4e-06  Score=95.00  Aligned_cols=63  Identities=13%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-cCCc--EEEcCEEEEcCCHHHHHHHh
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-KNGQ--IFDADIIVSNADIINTYRNL  993 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~~G~--~i~ad~VV~A~~~~~~~~~L  993 (1428)
                      ..+.+.|.+.+++.|..+..+..+.++...++..+.|++ .+|+  ++.||.||.|-|.....+..
T Consensus       103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~  168 (292)
T d1k0ia1         103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQS  168 (292)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCcccce
Confidence            456777888888889988888877776655443345554 4554  47899999998876555433

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.14  E-value=3.9e-07  Score=96.95  Aligned_cols=41  Identities=29%  Similarity=0.460  Sum_probs=38.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+|||||||||++||+||.++++.|.+|+|+|+++.+||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCee
Confidence            46999999999999999999999999999999999999866

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.10  E-value=4.3e-07  Score=97.31  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=38.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .+|||||||||++||+||.+|++.|++|+|+|+.+.+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            57999999999999999999999999999999999888854

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.06  E-value=8e-07  Score=102.53  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             cceeeecCCCcchHHHHHHHHh------CCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQT------AGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~------~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .+||||||||+|||+||+.|++      +|++|+||||+..+|....
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            5899999999999999999998      8999999999999987654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.05  E-value=5.7e-06  Score=77.44  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+++|||||+.|+-+|..|++.|++|+|+|+.++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            36899999999999999999999999999999765

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=5.9e-07  Score=96.72  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCC-------CeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAG-------ISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G-------~~V~VlEa~~~~GGr~~  751 (1428)
                      +++|+|||||+|||+||++|+++|       ++|+|+|+.+.+||.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            479999999999999999999998       58999999999999764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.05  E-value=8.7e-06  Score=94.16  Aligned_cols=65  Identities=14%  Similarity=0.004  Sum_probs=48.9

Q ss_pred             HHHHHcCcEEEeCceeeEEEEeCC----eEEEEEe--cCCc--EEEcCE-EEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        939 KLFQNLGGNLILNSQVISIYVNNN----KVNKVHL--KNGQ--IFDADI-IVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       939 ~~l~~~G~~V~~~~~V~~I~~~~~----~v~~V~~--~~G~--~i~ad~-VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      ..++..+.+|++++.|++|..+++    ++++|++  .+|+  ++.|+. ||++++...+.+.|+.....|+..
T Consensus       233 p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~  306 (385)
T d1cf3a1         233 PNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSI  306 (385)
T ss_dssp             GGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHH
T ss_pred             chhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHH
Confidence            334556899999999999999875    7888876  3564  467776 999999888877666555556554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.04  E-value=1.2e-06  Score=95.61  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=34.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      .++||||||||++||+||++|+++|++|+|+||+...+|
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            356899999999999999999999999999999765444

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=1.9e-05  Score=74.50  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+++|||||..|+-.|..|++.|.+|+|+|++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            36899999999999999999999999999999765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=7.8e-07  Score=94.32  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=36.6

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++|||||||||++|++||.++++.|.+|+|+|++ .+||.|
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeE
Confidence            4699999999999999999999999999999995 578855

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.01  E-value=2.2e-06  Score=93.16  Aligned_cols=56  Identities=9%  Similarity=0.019  Sum_probs=44.5

Q ss_pred             echHHHHHHHHHhccCC-eEEecceEEEEeCC--e-----EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545        443 CSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S-----IRINNKKIINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~-----v~l~~g~~~~a~lvI~AdG~~S~~  498 (1428)
                      .+..+.+.|.+.+.+.| .++++++|+++...  .     ++..++.+++|+.||.|+|..|.+
T Consensus       107 ~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p  170 (253)
T d2gqfa1         107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMP  170 (253)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCG
T ss_pred             chhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccc
Confidence            45678899999998888 78889999988632  1     344578899999999999998643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.99  E-value=1.1e-06  Score=93.72  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=36.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      ++|||+|||||+|||+||.+|++.|++|+|+|+....||.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence            5799999999999999999999999999999998776654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=1.7e-06  Score=89.92  Aligned_cols=40  Identities=30%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCe-EEEEccCCCCCCcc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGIS-TIILEQRDKPGGRA  750 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~-V~VlEa~~~~GGr~  750 (1428)
                      ..+|+|||||++||+||..|+++|++ |+|+|+++.+||..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence            57899999999999999999999985 99999999999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.3e-06  Score=92.98  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=41.4

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH   53 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w   53 (1428)
                      |+++||+||||+|.+||++|++|++.+  ++|+|||+++..+.++++|-
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~GG~~~t~~   48 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAASVT   48 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCEEC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCcceEEee
Confidence            677999999999999999999999975  79999999988866666654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.95  E-value=2.1e-06  Score=91.92  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=39.5

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      ...++|+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~   89 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN   89 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccc
Confidence            3568999999999999999999999999999999999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=1.9e-06  Score=92.17  Aligned_cols=40  Identities=23%  Similarity=0.139  Sum_probs=36.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~  751 (1428)
                      ++|+|||||+|||+||.+|+++  |++|+|||+.+.+||.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            5899999999999999999876  789999999999999764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=4e-06  Score=89.84  Aligned_cols=38  Identities=24%  Similarity=0.213  Sum_probs=34.9

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG  748 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG  748 (1428)
                      .|||+|||||++||+||.++++.|++|+|+|+.+..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            59999999999999999999999999999999776543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=2.6e-06  Score=95.58  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=38.5

Q ss_pred             ccceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~  751 (1428)
                      ..+||+|||||++||+||++|+++  |++|+|+|+++.+||.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            368999999999999999999964  999999999999999774

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.81  E-value=4.3e-05  Score=72.12  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+++|||||..||-.|..|++.|.+|+|+|++++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            36899999999999999999999999999999765

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=4.7e-06  Score=85.47  Aligned_cols=39  Identities=31%  Similarity=0.388  Sum_probs=34.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY  751 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~  751 (1428)
                      .|||+|||||++||+||.++++.|.+|+|+|++  .||.+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999974  577553

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.77  E-value=5.9e-05  Score=71.19  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=38.2

Q ss_pred             HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCC
Q psy10545        936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNAD  985 (1428)
Q Consensus       936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~  985 (1428)
                      .+.+.++++|+++++++.|++|..+++++ .|++.  +|  +++.||.|++|+|
T Consensus        72 ~l~~~l~~~gv~~~~~~~v~~v~~~~~g~-~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          72 VWQKQNEYRFDNIMVNTKTVAVEPKEDGV-YVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHGGGEEEEECSCEEEEEEEETTEE-EEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHHHHcCcccccCcEEEEEEEcCCcE-EEEEEeCCCCeEEEEcCEEEEecC
Confidence            34556777899999999999999988873 45543  33  4799999999985

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4e-06  Score=88.87  Aligned_cols=39  Identities=31%  Similarity=0.432  Sum_probs=34.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      .+||+||||||++|++||.++++.|++|+|+|+. ..||.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~   40 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGT   40 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCc
Confidence            4699999999999999999999999999999985 45553

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00014  Score=68.64  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .+++|||||..|+-+|..|++.|.+|+|+|++++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=4.3e-06  Score=88.70  Aligned_cols=39  Identities=33%  Similarity=0.517  Sum_probs=35.0

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ++||||||||++||+||.++++.|.+|+|+|+.. +||.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~   41 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVC   41 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcce
Confidence            5899999999999999999999999999999964 56644

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=4.1e-06  Score=94.80  Aligned_cols=44  Identities=20%  Similarity=0.282  Sum_probs=39.7

Q ss_pred             ccccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545        706 KLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR  749 (1428)
Q Consensus       706 ~~~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr  749 (1428)
                      +.+.+++||+|||||+|||+||..++++|.+|+|+||.+..||.
T Consensus         2 ~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           2 KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             CCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            34567899999999999999999999999999999999887764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=4.2e-06  Score=86.44  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=34.9

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCC
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPG  747 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~G  747 (1428)
                      .+++||+|||||++||+||.+|++.|.+|+|+|+.+..|
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g   41 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG   41 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccc
Confidence            356899999999999999999999999999999876543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.72  E-value=7.1e-06  Score=89.37  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             ccccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        706 KLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       706 ~~~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      +..+++||+||||||++|+.||..|++.|.+|+|+|+.+.+||.|
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            345578999999999999999999999999999999999999966

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.71  E-value=7.9e-06  Score=94.16  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             HcCcEEEeCceeeEEEEeC--CeEEEEEe---cCCc--EEEcCEEEEcCCHHHHHHHhcC
Q psy10545        943 NLGGNLILNSQVISIYVNN--NKVNKVHL---KNGQ--IFDADIIVSNADIINTYRNLLG  995 (1428)
Q Consensus       943 ~~G~~V~~~~~V~~I~~~~--~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~~~~Ll~  995 (1428)
                      ..|.+|++++.|++|..++  +++++|++   .+|+  ++.|+.||++++...+.+.|+.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~  289 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  289 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhh
Confidence            3468999999999999864  56888875   3454  5789999999999988876553

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.70  E-value=8.6e-05  Score=69.88  Aligned_cols=35  Identities=11%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+|+|||||..|+-.|..|++.|.+|+++|+.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            36899999999999999999999999999998654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.67  E-value=6.3e-06  Score=89.69  Aligned_cols=38  Identities=29%  Similarity=0.419  Sum_probs=35.3

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      ||++|||||++|++||.++++.|.+|+|+|+. .+||.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeE
Confidence            89999999999999999999999999999985 578865

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.66  E-value=5.9e-06  Score=87.48  Aligned_cols=40  Identities=33%  Similarity=0.563  Sum_probs=35.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~  750 (1428)
                      .++|+||||||++|++||..+++.|.+|+|+|++ .+||.|
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c   43 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence            3689999999999999999999999999999986 567754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.51  E-value=1.8e-05  Score=90.36  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             cccceeeecCCCcchHHHHHHHH-----hCCCeEEEEccCCCC
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQ-----TAGISTIILEQRDKP  746 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La-----~~G~~V~VlEa~~~~  746 (1428)
                      ...|||+|||||++||++|..|+     ++|++|+||||++.+
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            34699999999999999999996     579999999998765

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.47  E-value=2e-05  Score=81.32  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .++||+|||||++||+||.+|++.|.+|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            468999999999999999999999999999998654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.47  E-value=1.7e-05  Score=85.04  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=33.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPG  747 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~G  747 (1428)
                      ++|||||||||+||++||.++++.|. +|+|+|+....|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            57999999999999999999999985 699999977643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.45  E-value=4.3e-05  Score=84.37  Aligned_cols=131  Identities=18%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545        311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS  390 (1428)
Q Consensus       311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~  390 (1428)
                      +.|+||+|+|+.|+++|..|.++|++|+|+|+.+.+                 ||.+..       ...|+.+.   +. 
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i-----------------GGtW~~-------n~ypg~~~---d~-   58 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV-----------------GGVWYW-------NRYPGARC---DI-   58 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS-----------------CTHHHH-------CCCTTCBC---SS-
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc-----------------cccccc-------CCCCCcee---cc-
Confidence            457899999999999999999999999999998866                 355432       12233211   00 


Q ss_pred             CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC---eEEecceE
Q psy10545        391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN---FLFNNKTV  467 (1428)
Q Consensus       391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~---~~~~~~~v  467 (1428)
                       ......++..        ..+   ....+|                ......+..+.+.|.+.+++.+   .+.++++|
T Consensus        59 -~~~~~~~s~~--------~~~---~~~~~~----------------~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V  110 (298)
T d1w4xa1          59 -ESIEYCYSFS--------EEV---LQEWNW----------------TERYASQPEILRYINFVADKFDLRSGITFHTTV  110 (298)
T ss_dssp             -CTTTSSCCSC--------HHH---HHHCCC----------------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCE
T ss_pred             -cccccccccc--------ccc---cCCCCC----------------ccccCccchHHHHHHHHHHHcCCcccccCCcEE
Confidence             0000000000        000   000001                1112356677888888887765   48889999


Q ss_pred             EEEeC--C-e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        468 EIITP--T-S---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       468 ~~i~~--~-~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      +++..  + +   |++.++.++++|.||.|.|.-|.
T Consensus       111 ~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~  146 (298)
T d1w4xa1         111 TAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSD  146 (298)
T ss_dssp             EEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred             EEEEEecCCCceeeccccccccccceEEEeeccccc
Confidence            99862  2 1   88889999999999999998644

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.44  E-value=2.6e-05  Score=88.96  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             cccceeeecCCCcchHHHHHHHHh----CCCeEEEEccCCCCCCcc
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQT----AGISTIILEQRDKPGGRA  750 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~----~G~~V~VlEa~~~~GGr~  750 (1428)
                      ..++||+|||||++||+||+.|++    +|.+|+|+||....||..
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            346899999999999999999975    699999999988776643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=2.8e-05  Score=82.73  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             CCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          4 EKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         4 ~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .|+.+||++|||+||||+++|.++++.+  ++|+|||++++.
T Consensus         1 ~m~~~yDviVIG~GpAGl~aA~~aa~~G--~kV~lie~~~~~   40 (233)
T d1v59a1           1 TINKSHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKL   40 (233)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSS
T ss_pred             CCCcccCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCc
Confidence            3677899999999999999999999964  899999998776

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=4.1e-05  Score=84.77  Aligned_cols=43  Identities=28%  Similarity=0.580  Sum_probs=36.8

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      +||++|||||+|||++|++|++.+  .+|+|+|+++..+.+.+++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~~iGG~~~t~   43 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAYTE   43 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGCEE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCCCcccceEEe
Confidence            389999999999999999999864  7999999999984445544

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.42  E-value=2.4e-05  Score=83.53  Aligned_cols=36  Identities=19%  Similarity=0.106  Sum_probs=31.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDK  745 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~  745 (1428)
                      ++|||||||||++||+||.++++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999885 6899998543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.40  E-value=3.7e-05  Score=81.36  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..||++|||||||||++|.++++.+  ++|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G--~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence            5799999999999999999999975  899999987554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.38  E-value=0.0002  Score=66.99  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=71.5

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      .++|+|+|+.|+=.|-.|++.|.+|+|+|+.+.+.                                +.           
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~-----------   68 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM--------------------------------SR-----------   68 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT--------------------------------TT-----------
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccccc--------------------------------cc-----------
Confidence            36799999999999999999999999999876540                                00           


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                                 .                       +               -..+.+.+.+.+++.| .++.+++|+.+.
T Consensus        69 -----------~-----------------------~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~~~   99 (121)
T d1d7ya2          69 -----------A-----------------------A---------------PATLADFVARYHAAQGVDLRFERSVTGSV   99 (121)
T ss_dssp             -----------T-----------------------S---------------CHHHHHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred             -----------c-----------------------C---------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence                       0                       0               0233556667777778 688899999998


Q ss_pred             CCeEEEcCCcEEEeeEEEecCC
Q psy10545        472 PTSIRINNKKIINANCIIDGRG  493 (1428)
Q Consensus       472 ~~~v~l~~g~~~~a~lvI~AdG  493 (1428)
                      ...|+++||+++.+|+||-|-|
T Consensus       100 ~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         100 DGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TTEEEETTSCEEECSEEEECSC
T ss_pred             CCEEEECCCCEEECCEEEEeeC
Confidence            8889999999999999999876

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.37  E-value=4.7e-05  Score=83.58  Aligned_cols=57  Identities=18%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++-..+.++|.+.+++.| .++.+++|.+|..++    |.+++| +++|+.||-|-|..|.
T Consensus       145 g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             ccccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcch
Confidence            45777788999999999888 788899999987432    555554 7999999999998754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.36  E-value=4.5e-05  Score=80.96  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+||++|||+|||||++|.+|++.+  ++|+|||+.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence            46899999999999999999999964  899999988765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.32  E-value=5.2e-05  Score=82.89  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             eeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      .++...+.+.|.+.+.+.| .++.+++|+.|..++    |.+++| +++|+.||.|.|..|.
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG  207 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHH
Confidence            4677788889999998888 688889999997543    566554 7999999999998854

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.30  E-value=6.4e-05  Score=86.20  Aligned_cols=39  Identities=15%  Similarity=0.263  Sum_probs=34.2

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      |+.+||+||||+|+||+.+|.+|++.  +++|+|||.++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~--G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhC--CCeEEEEecCCCC
Confidence            34589999999999999999999995  5899999987544

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.29  E-value=5.7e-05  Score=82.82  Aligned_cols=43  Identities=26%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW   50 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw   50 (1428)
                      .++|++|||||||||++|++|+++ .+++|+|||+++..+.+.|
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCCCcee
Confidence            478999999999999999999863 4699999999987743333

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=9.2e-05  Score=78.76  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++|||+||||+++|.++++.  +++|+|||..+..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~--G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGG--CCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence            479999999999999999999997  4899999987654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.23  E-value=0.0001  Score=80.25  Aligned_cols=43  Identities=21%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      +||+|||||+|||++|++|++.+. .+|+|+|+++..+.+.+++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~-~~V~vlE~~~~~GG~~~t~   43 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGI-TDLLILEATDHIGGRMHKT   43 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTC-CCEEEECSSSSSBTTSCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCC-CcEEEEECCCCCCceEEEe
Confidence            589999999999999999999752 3699999998885455544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.21  E-value=9.6e-05  Score=77.72  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=33.8

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||++||||||||+++|..+++.+  ++|+|||++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCC
Confidence            4799999999999999999999975  899999998776

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00013  Score=82.88  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=38.9

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT   55 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~   55 (1428)
                      ||||||||+|||++|++|++.+  .+|+|+|++...+.++|++...
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~~~GGr~~t~~~~   44 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTYTLRNQ   44 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTT--CCEEEEESSSSSBTTCCEECCT
T ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCcceeeEEECC
Confidence            8999999999999999999975  7999999999886678877643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.10  E-value=0.00019  Score=80.85  Aligned_cols=57  Identities=11%  Similarity=-0.071  Sum_probs=43.4

Q ss_pred             eechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCC---c---EEEeeEEEecCCCCCCC
Q psy10545        442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNK---K---IINANCIIDGRGLKNSQ  498 (1428)
Q Consensus       442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g---~---~~~a~lvI~AdG~~S~~  498 (1428)
                      +.|..+.+.|...+...+ .+..+++|++|+.+  .  |++.++   .   +..+|.||.|+|..|.+
T Consensus       110 ~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         110 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             CchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccc
Confidence            678899999988887655 68889999999743  2  665432   1   45799999999998653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00013  Score=76.46  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      +||++||||||||+++|.++++.+  ++|+|||++.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~~   35 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYG--QKCALIEAKE   35 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC
Confidence            699999999999999999999964  8999999853

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.08  E-value=0.00014  Score=76.37  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=33.3

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ++.+||++||||||||+.+|.++++.+  ++|+|||++.
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~~   38 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQA   38 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSC
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            566899999999999999999999975  8999999763

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.06  E-value=0.00011  Score=81.82  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+|||+|||+|+|||++|++|++.+  ++|+|||+.+..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence            35799999999999999999999965  799999998766

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.06  E-value=0.00014  Score=83.86  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .||+||||+|.||+.+|.||++. ++.+|+|||.++..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~~   60 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCCC
Confidence            59999999999999999999985 56899999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.05  E-value=0.00019  Score=79.47  Aligned_cols=41  Identities=20%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ||+|||||+|||++|++|++.+  .+|+|+|+++..+-+.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~   42 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVGTH   42 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCceEEEE
Confidence            8999999999999999999975  7999999998885445444

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.03  E-value=0.00014  Score=83.69  Aligned_cols=64  Identities=11%  Similarity=-0.093  Sum_probs=46.8

Q ss_pred             HHHHcCcEEEeCceeeEEEEeCC----eEEEEEec--CCc--EEEcCE-EEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        940 LFQNLGGNLILNSQVISIYVNNN----KVNKVHLK--NGQ--IFDADI-IVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       940 ~l~~~G~~V~~~~~V~~I~~~~~----~v~~V~~~--~G~--~i~ad~-VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      .+...+.+|++++.|++|.++++    ++++|++.  +|.  ++.|++ ||++++...+.+.|+....-|+..
T Consensus       240 ~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~  312 (391)
T d1gpea1         240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV  312 (391)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHH
T ss_pred             cccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCCcHHH
Confidence            34456899999999999987632    68888763  453  467876 999999888887676655555544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00024  Score=80.47  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=38.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ...+|||||||+|||++|++|++.+  .+|+|+|+++..+-|+|++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~r~GGr~~t~   47 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVATF   47 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCcccEEEE
Confidence            3568999999999999999999975  7999999998886577664

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.00  E-value=0.0002  Score=82.20  Aligned_cols=37  Identities=32%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +||+||||+|.||+.+|.||++. ++.+|+|||.++..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSYE   53 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSCCC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCCCC
Confidence            59999999999999999999985 46899999998654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00021  Score=72.54  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS   42 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~   42 (1428)
                      .||++||||||||+++|..+++.+  ++|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G--~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe
Confidence            399999999999999999999964  899999965

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00011  Score=78.02  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             cceeeecCCCcchHHHHHHHHhCC---CeEEEEccCCCCCCcc
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAG---ISTIILEQRDKPGGRA  750 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G---~~V~VlEa~~~~GGr~  750 (1428)
                      +.+|+|||||++|++||.++++.|   ++|+|+|+ ..+||.|
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~c   42 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA   42 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence            358999999999999999988765   67999998 4677754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.95  E-value=0.00021  Score=81.27  Aligned_cols=37  Identities=35%  Similarity=0.393  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +.||+||||+|+||+.+|.||++.  +++|+|||.++..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~~~   37 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGPS   37 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC--CCeEEEEEccCCC
Confidence            479999999999999999999996  4799999998644

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00022  Score=74.88  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .+||+||||+||||+++|.++++.+  ++|+|||+..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G--~kV~vIEk~~   36 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESHK   36 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC
Confidence            3799999999999999999999965  7999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.94  E-value=4.3e-05  Score=81.81  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ++|+|||||++||++|++|+++|++|+|+|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            36999999999999999999999988777774

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.90  E-value=0.00038  Score=78.21  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ   54 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~   54 (1428)
                      ..+|+|||||+|||++|++|++++  .+|+|+|+++..+-+.+++..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~   74 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVRTYRN   74 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCeeEEEec
Confidence            358999999999999999999975  799999999888556666554

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.89  E-value=0.00025  Score=74.39  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .+||+|||||||||+++|.++++.+  ++|+|||+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CEEEEEecCCC
Confidence            3799999999999999999999864  89999998753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.86  E-value=0.001  Score=61.64  Aligned_cols=54  Identities=17%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcC
Q psy10545        931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNA  984 (1428)
Q Consensus       931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~  984 (1428)
                      ..+.+.+.+.++++|++|++|+.|++|+..+++...|++++|+++.||.||+|+
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            355677888899999999999999999876554467999999999999999985

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00025  Score=78.82  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=36.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      .++|++|||+|||||++|+.|+++.++.+|+|+|+++..+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            4689999999999999999999877789999999998874

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.84  E-value=0.00025  Score=79.85  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..|||+|||+|+|||++|++|++.+  ++|+|||+.+..
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G--~~V~liEK~~~~   40 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK   40 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCC
Confidence            4689999999999999999999964  799999988654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.83  E-value=0.00033  Score=74.30  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .+||++|||+||||+++|.++++.+ ..+|+|+|...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g-~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLY-KKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTS-CCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEeec
Confidence            4799999999999999999999865 35799998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.001  Score=61.60  Aligned_cols=87  Identities=18%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSV  393 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~~  393 (1428)
                      ++|+|+|+.|+=.|..|++.|.+|+|+|+.+.+                                .|             
T Consensus        24 vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~--------------------------------l~-------------   58 (116)
T d1gesa2          24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP--------------------------------LP-------------   58 (116)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS--------------------------------ST-------------
T ss_pred             EEEECCChhhHHHHHHhhccccEEEEEeecchh--------------------------------hh-------------
Confidence            579999999999999999999999999987644                                00             


Q ss_pred             CCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEeC
Q psy10545        394 KNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP  472 (1428)
Q Consensus       394 ~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~  472 (1428)
                                                          .           . ...+.+.+.+.+++.| .++.+++|+.+..
T Consensus        59 ------------------------------------~-----------~-d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          59 ------------------------------------S-----------F-DPMISETLVEVMNAEGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             ------------------------------------T-----------S-CHHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             ------------------------------------h-----------c-chhhHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence                                                0           0 0235667777777778 6888999988864


Q ss_pred             C-----eEEEcCCcEEEeeEEEecCC
Q psy10545        473 T-----SIRINNKKIINANCIIDGRG  493 (1428)
Q Consensus       473 ~-----~v~l~~g~~~~a~lvI~AdG  493 (1428)
                      +     .+++++|+++.+|+||.|-|
T Consensus        91 ~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             cCCcEEEEEECCCCEEEcCEEEEecC
Confidence            3     26788999999999999977

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.76  E-value=0.00025  Score=80.19  Aligned_cols=63  Identities=17%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             HHHcCcEEEeCceeeEEEEeCC---eEEEEEec--CCc----EEEcC-EEEEcCCHHHHHHHhcCCCCCChhH
Q psy10545        941 FQNLGGNLILNSQVISIYVNNN---KVNKVHLK--NGQ----IFDAD-IIVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~~~---~v~~V~~~--~G~----~i~ad-~VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
                      ....+.+|.+++.|++|..+++   ++++|++.  +|.    .+.|+ .||++++...+.+.|+....-|+..
T Consensus       204 a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~  276 (351)
T d1ju2a1         204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESY  276 (351)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHH
T ss_pred             chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHH
Confidence            4456899999999999998753   68888874  332    24454 5999999999888777655555443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.76  E-value=0.00024  Score=80.37  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      +...||+||||+|+||+.+|.||++.   .+|+|||.++.
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~~   59 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGSL   59 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSBC
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC---CCEEEEecCCC
Confidence            33469999999999999999999973   69999998853

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00035  Score=77.57  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=35.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++||+|||+|+|||++|+++++.+++++|+|||+.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            468999999999999999999998888999999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.72  E-value=0.00053  Score=75.94  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      .|+|||||+|||++|++|++.+  .+|+|+|+++..+.+.+++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~   43 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLRSV   43 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCCEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCCCCcCceEEe
Confidence            5899999999999999999964  7999999998885444443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00046  Score=71.53  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .|||||||||+||+.+|+++++.+  ++++||+.+..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G--~ktllit~~~~   36 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLD   36 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEEeccc
Confidence            599999999999999999999964  89999997743

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00025  Score=79.52  Aligned_cols=37  Identities=24%  Similarity=0.167  Sum_probs=33.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+|||||||+|+|||++|+++++++  ++|+|||+.+..
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G--~~V~lleK~~~~   42 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT   42 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcC--CeEEEEeCCCCC
Confidence            4799999999999999999999975  689999998766

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.67  E-value=0.0006  Score=73.20  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=32.7

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      |....+|+|||||++||++|++|++++  .+|+|||++..
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~~   40 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLP   40 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            344568999999999999999999976  59999998753

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.64  E-value=0.00045  Score=73.49  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=32.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+||+||||+||||+++|.++++.+ ..+|+|+|.....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g-~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEEeccC
Confidence            5799999999999999999998864 2469999987654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.60  E-value=0.00067  Score=75.19  Aligned_cols=42  Identities=14%  Similarity=0.320  Sum_probs=35.8

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF   52 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~   52 (1428)
                      ..++|||||+|||++|++|++.  +.+|+|+|++...+.+.+++
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~~iGG~~~t~   44 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSYDA   44 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGGGCEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCCCCcCeeeEE
Confidence            4689999999999999999986  47999999999995455544

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.60  E-value=0.00052  Score=76.58  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ..+||+|||+|+|||++|+.|++.+  ++|+|||+.+..
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~~~   58 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIP   58 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSSSS
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            3589999999999999999999965  799999998766

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.60  E-value=0.00038  Score=77.58  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...+||+|||+|+|||++|+++++.+  ++|+|||+.+..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G--~~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            45789999999999999999999975  799999998766

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.58  E-value=0.00059  Score=73.48  Aligned_cols=33  Identities=33%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ||++||||||||+.+|.++++.+  ++|+|||+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G--~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            89999999999999999999964  8999999753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.55  E-value=0.00069  Score=77.17  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             CCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          3 FEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         3 ~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      ++...++|+||||+|++|+.+|++|++.  +++|+|||.+.
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~   40 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGR   40 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            3556789999999999999999999995  58999999874

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00082  Score=74.26  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      .+||+||||+|+|||+.|+++++.   .+|+|||+.+..+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~---g~V~llEK~~~~g   42 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQ---HQVIVLSKGPVTE   42 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTT---SCEEEECSSCTTC
T ss_pred             ccCCEEEECccHHHHHHHHHhhcC---CCEEEEECCCCCC
Confidence            469999999999999999998764   3899999998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00082  Score=62.91  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      ..+++|||||+.|+-+|..|++.|++|+|+|+++++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            368999999999999999999999999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0012  Score=66.02  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=33.6

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ...++|||||||||++|+.|++++  .+|+|+|+.+..+
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIG   79 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSC
T ss_pred             CcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCccC
Confidence            468999999999999999999975  7999999998883

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.42  E-value=0.0027  Score=60.14  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      .++|+|+|+.|+=.|..|++.|.+|+|+|+.+.+
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3679999999999999999999999999988654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.41  E-value=0.0031  Score=58.80  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS  392 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~  392 (1428)
                      .++|+|+|+.|+=.|..|++.|.+|+|+|+.+.+.                                |.           
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l--------------------------------~~-----------   68 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL--------------------------------GV-----------   68 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT--------------------------------TT-----------
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCccc--------------------------------cc-----------
Confidence            35799999999999999999999999999876440                                00           


Q ss_pred             CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545        393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT  471 (1428)
Q Consensus       393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~  471 (1428)
                                 .                       +               ...+-+.+.+.+++.| .++.+++++.++
T Consensus        69 -----------~-----------------------~---------------d~~~~~~~~~~l~~~gv~~~~~~~v~~i~   99 (123)
T d1nhpa2          69 -----------Y-----------------------L---------------DKEFTDVLTEEMEANNITIATGETVERYE   99 (123)
T ss_dssp             -----------T-----------------------C---------------CHHHHHHHHHHHHTTTEEEEESCCEEEEE
T ss_pred             -----------c-----------------------c---------------chhhHHHHHHHhhcCCeEEEeCceEEEEE
Confidence                       0                       0               0134456666667778 688899999998


Q ss_pred             CCe---EEEcCCcEEEeeEEEec
Q psy10545        472 PTS---IRINNKKIINANCIIDG  491 (1428)
Q Consensus       472 ~~~---v~l~~g~~~~a~lvI~A  491 (1428)
                      .++   ..+.||+++.||+||-|
T Consensus       100 ~~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2         100 GDGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             CSSBCCEEEESSCEEECSEEEEC
T ss_pred             cCCCEEEEEeCCCEEECCEEEEE
Confidence            653   45678999999999965

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.40  E-value=0.00098  Score=75.35  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             cccEEEECccHHHHHHHHHHhcc--CCCCeEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQY--NPKLNVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~--~~~~~v~~~~~~~~~   45 (1428)
                      ++||+|||+|+|||++|++|++.  .++++|+|||+.+..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            58999999999999999998763  357999999998655

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.38  E-value=0.0034  Score=58.48  Aligned_cols=86  Identities=20%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSV  393 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~~  393 (1428)
                      ++|+|+|+.|+=.|..|++.|.+|+|+|+.+...                                              
T Consensus        35 vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------------------   68 (122)
T d1xhca2          35 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL----------------------------------------------   68 (122)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT----------------------------------------------
T ss_pred             EEEECCcHHHHHHHHHhhcccceEEEEecccccc----------------------------------------------
Confidence            5799999999999999999999999999875430                                              


Q ss_pred             CCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEeC
Q psy10545        394 KNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP  472 (1428)
Q Consensus       394 ~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~  472 (1428)
                           +                            +               -..+.+.+.+.+++.| .++.+++++.++.
T Consensus        69 -----~----------------------------~---------------d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~  100 (122)
T d1xhca2          69 -----G----------------------------L---------------DEELSNMIKDMLEETGVKFFLNSELLEANE  100 (122)
T ss_dssp             -----T----------------------------C---------------CHHHHHHHHHHHHHTTEEEECSCCEEEECS
T ss_pred             -----C----------------------------C---------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEeC
Confidence                 0                            0               0123455666677778 6888999999987


Q ss_pred             CeEEEcCCcEEEeeEEEecCCC
Q psy10545        473 TSIRINNKKIINANCIIDGRGL  494 (1428)
Q Consensus       473 ~~v~l~~g~~~~a~lvI~AdG~  494 (1428)
                      +.+. .+++.+.+|+||-|-|.
T Consensus       101 ~~v~-~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         101 EGVL-TNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             SEEE-ETTEEEECSCEEEECCE
T ss_pred             CEEE-eCCCEEECCEEEEEEEe
Confidence            7764 46889999999999884

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.30  E-value=0.0011  Score=73.02  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545        440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNS  497 (1428)
Q Consensus       440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~  497 (1428)
                      ..++...+-++|.+.+.+.| .++.+++|+++..+  .   |.++ .++++|+.||.|.|..|.
T Consensus       143 g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~-~g~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTA-DGVIPADIVVSCAGFWGA  205 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECCGGGHH
T ss_pred             cccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEecc-ceeEECCEEEEecchhHH
Confidence            45778889999999998888 78889999998742  2   5554 457999999999998754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00093  Score=68.05  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .+.|++|||||||||++|..|++.+  ++|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeecc
Confidence            4689999999999999999999964  89999997644

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.23  E-value=0.0015  Score=68.64  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=33.6

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      +-|+|||+|||||++|.+|.+.+.+.+|+|+|+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4689999999999999999888777899999999877

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.10  E-value=0.0021  Score=68.97  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ...+||+||||+|+||+.+|..+++.+  .+|++||..+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G--~kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcc
Confidence            345899999999999999999999975  799999998776

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.05  E-value=0.0015  Score=68.96  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=33.5

Q ss_pred             ccEEEECccHHHHHHHHHHhccC-----CCCeEEEEccCCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYN-----PKLNVLLLELSSSVK   46 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~-----~~~~v~~~~~~~~~~   46 (1428)
                      +.|+|||+|||||++|++|.+++     .+.+|+|+|+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            68999999999999999999875     446899999998773

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0048  Score=58.73  Aligned_cols=49  Identities=14%  Similarity=0.320  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCC
Q psy10545        446 HLNSYLIRALGINN-FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGL  494 (1428)
Q Consensus       446 ~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~  494 (1428)
                      ++.+.+.+.+++.| .++.++.|+.++.+    .|+++||+++.||+||-|-|.
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            34566777788888 68889999998754    288899999999999999883

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0017  Score=57.35  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      .++|+|||.|.+|+++|.+|.++|.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            467999999999999999999999999999987653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.99  E-value=0.0014  Score=65.96  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCC--eEEEEccCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGI--STIILEQRDK  745 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~--~V~VlEa~~~  745 (1428)
                      ++|+|||||.+|+.+|..|++.|.  +|+|+|+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            589999999999999999999884  7999999764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.78  E-value=0.0017  Score=66.07  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCC
Q psy10545        312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  345 (1428)
Q Consensus       312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~  345 (1428)
                      ++++|+|+||.|+.+|+.|+|.|++|+|+|+...
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            4678999999999999999999999999997653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.73  E-value=0.0026  Score=72.07  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS   43 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~   43 (1428)
                      .|+||||+|++|+.+|++|++.  +++|+|||.+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC--cCeEEEEecCC
Confidence            6999999999999999999995  58999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.70  E-value=0.0035  Score=62.71  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=33.2

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .++|||||++|+.+|.+|.+.+++.+|++||+++..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            589999999999999999999989999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.66  E-value=0.0043  Score=65.16  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=33.9

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK   46 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~   46 (1428)
                      ...+++||||||||+++|..|++.+  .+|+|+|+++..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccccC
Confidence            4579999999999999999999965  7999999998773

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.0044  Score=57.63  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=30.7

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .+++|||||+.|+-.|..|++.|.+|+|++++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            579999999999999999999999999999753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.47  E-value=0.014  Score=53.70  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      ..+|+|+|..|+=.|..|++.|.+|+++|+.+..
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            3679999999999999999999999999987644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.40  E-value=0.016  Score=53.20  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             HHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        314 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       314 ~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      ++|+|+|+.|+=.|..|++.|.+|+|+|+.+.+
T Consensus        25 v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          25 IGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            579999999999999999999999999987644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.38  E-value=0.013  Score=53.75  Aligned_cols=49  Identities=12%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhccCC-eEEecceEEEEeCC-----eEEEcCCcEEEeeEEEecCCC
Q psy10545        446 HLNSYLIRALGINN-FLFNNKTVEIITPT-----SIRINNKKIINANCIIDGRGL  494 (1428)
Q Consensus       446 ~l~~~L~~~~~~~~-~~~~~~~v~~i~~~-----~v~l~~g~~~~a~lvI~AdG~  494 (1428)
                      ++.+.+.+.+++.| .++.++.|+.|+.+     .++++||.++.+|+||-|-|+
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence            34666777777788 68889999999632     278899999999999999884

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.29  E-value=0.0054  Score=62.22  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             cccEEEECccHHHHHHHHHHhccCCCC-eEEEEccCCCC
Q psy10545          8 YWDFILIGAGLWNSIIAWYLKQYNPKL-NVLLLELSSSV   45 (1428)
Q Consensus         8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~-~v~~~~~~~~~   45 (1428)
                      .--|+|||||+|||++|..|++.+  . .|+|+|+++..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCcc
Confidence            346899999999999999999975  4 49999988766

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.29  E-value=0.015  Score=53.28  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      ..+|+|+|+.|+=.|..|++.|.+|+|+|+.+.+
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            4679999999999999999999999999987644

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.23  E-value=0.017  Score=52.95  Aligned_cols=46  Identities=11%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEec
Q psy10545        446 HLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDG  491 (1428)
Q Consensus       446 ~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~A  491 (1428)
                      .+.+.+.+.+++.| .++.+++|++++.  ++   |+++||+++.||.||-|
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence            44666777777788 6888999999963  22   78899999999999965

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.23  E-value=0.0056  Score=61.21  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      .+.|+|||||..|..+|.+|+++|++|+|++++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            46899999999999999999999999999998743

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.15  E-value=0.0058  Score=64.11  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=30.0

Q ss_pred             ccEEEECccHHHHHHHHHHhccC-CCCeEEEEccCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYN-PKLNVLLLELSS   43 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~-~~~~v~~~~~~~   43 (1428)
                      .+++|||+||||+++|.++++.+ ..++|++||++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            47999999999999999988765 458999999753

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0085  Score=61.81  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=35.0

Q ss_pred             ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      .+++++|||||+||+.+|..|.+.+++.+|++|+.++..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            478999999999999999999998888999999876544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.91  E-value=0.0056  Score=61.46  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+|+|||||.+|+-+|..|++.|.+|+|++..+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            46899999999999999999999999999887664

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.85  E-value=0.0064  Score=61.94  Aligned_cols=47  Identities=17%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             HHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc--EEEcCEEEEcCCH
Q psy10545        940 LFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ--IFDADIIVSNADI  986 (1428)
Q Consensus       940 ~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~--~i~ad~VV~A~~~  986 (1428)
                      .++++|+++++++.|++|+.+++++..-...+|+  ++.+|.+|++++.
T Consensus        65 ~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             HHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence            3556799999999999999887764333345554  5789999999964

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.81  E-value=0.007  Score=59.64  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      +|+|||||++|+.+|..|++ +.+|+|+|+++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            69999999999999999975 789999998765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.028  Score=51.97  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      -.+|+|+|+.|+=.|-.|++.|.+|+|+|+++.+
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            3579999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.65  E-value=0.0088  Score=59.96  Aligned_cols=33  Identities=30%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++++|||+|..|++.|..|+++|++|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999853

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.009  Score=61.62  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             HHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545        941 FQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD  985 (1428)
Q Consensus       941 l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~  985 (1428)
                      ++++|++++++++|++|+.++++   |+++||+++.||.||+|++
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~~~---V~l~dG~~i~~d~lViAtG  134 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRDNM---VKLNDGSQITYEKCLIATG  134 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGGTE---EEETTSCEEEEEEEEECCC
T ss_pred             HHHCCeEEEeCCEEEEeeccCce---eeeccceeeccceEEEeee
Confidence            45678999999999999776664   7889999999999999987

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.99  E-value=0.007  Score=60.76  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=33.9

Q ss_pred             cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545        944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI  986 (1428)
Q Consensus       944 ~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~  986 (1428)
                      .+++++++++|++|..+...   +.+.+|+++.+|.||+|++.
T Consensus        68 ~~i~~~~~~~v~~i~~~~~~---~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQAHT---VALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             TTCEEEETCCEEEEETTTTE---EEETTSCEEECSEEEECCCE
T ss_pred             CCeEEEEeccccccccccce---eEecCCcEeeeeeEEEEEEE
Confidence            36889999999999766654   67899999999999999964

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.87  E-value=0.048  Score=49.81  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      .++|+|+|+.|+=.|..|++.|.+|+|+|+.+.+
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            4679999999999999999999999999988654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.82  E-value=0.041  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      -.+|+|+|..|+=.|..+++.|.+|+++|+.+..
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            3579999999999999999999999999987644

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.73  E-value=0.036  Score=51.05  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      -++|+|+|..|+=.|..|++.|.+|+++|+.+..
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            4579999999999999999999999999987644

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.026  Score=55.32  Aligned_cols=34  Identities=15%  Similarity=-0.028  Sum_probs=31.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ++|+|||+|..|...|..|+++|++|+++.+.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4799999999999999999999999999999775

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.74  E-value=0.1  Score=47.98  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      ..+|+|+|..|+=.|..|++.|.+|+|+|+.+.+
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            3679999999999999999999999999987654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.71  E-value=0.043  Score=55.45  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      -++|||||++|+.+|..|.+.+++.+|+++|+++..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            389999999999999999998899999999976543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.036  Score=55.72  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      -.+|+|||||..|..-|..++++|++|+++|.++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            3689999999999999999999999999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.57  E-value=0.045  Score=52.95  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             ceeeec--CCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        712 KIRIFS--GAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       712 ~dViII--GaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      ..|+||  |||..|+.+|..|++.|.+|+|+|+.+++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            356665  99999999999999999999999998765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.36  E-value=0.049  Score=52.39  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ...+|+|||+|.+|+.|+..+.+.|.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            4679999999999999999999999999999975

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.08  E-value=0.035  Score=55.62  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +.|.+|+|||||--|.+.|..|++.|++|+++.++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            45678999999999999999999999999999874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.85  E-value=0.049  Score=51.00  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|+|+|+|--|...|..|.+.|++|+|+|+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            479999999999999999999999999999965

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.75  E-value=0.054  Score=54.90  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=30.5

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|.|||.|.-||..|..|+++|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            369999999999999999999999999999753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.62  E-value=0.068  Score=52.97  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      -|++|||||++|+-+|..|.+.+++.+|+++++.+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   39 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence            489999999999999999999887777777776643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.62  E-value=0.058  Score=52.62  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ...+|+|||||.+|+.||......|.+|+++|.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45799999999999999999999999999999864

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.10  E-value=0.094  Score=46.90  Aligned_cols=92  Identities=10%  Similarity=-0.014  Sum_probs=60.5

Q ss_pred             ceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545       1015 SLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus      1015 s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
                      ++.+|+++|+++ ++. +.+.-++.+..+             ......+++.|.+.|.++|+|+..+.+++......   
T Consensus         4 ~vavV~l~~~~~~~~~-~~GfG~LVP~~e-------------~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~---   66 (108)
T d2ivda2           4 PIAVVHLGFDAGTLPA-PDGFGFLVPAEE-------------QRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQP---   66 (108)
T ss_dssp             CEEEEEEEECTTSSCC-CCSSEEECCGGG-------------CCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCG---
T ss_pred             CEEEEEEEEcHHHCCC-CCceEEEccCCC-------------CCeEEEEEEEccccccccCCCCEEEEEEeCCCCCc---
Confidence            678999999876 443 233333433221             13356788888889999999999898988553321   


Q ss_pred             CCcHHHHHHHHHHHHHHHHhccCCCccCceEE
Q psy10545       1094 INWSEESIKLKNIVFMYLEQYCIPNLRKKLIT 1125 (1428)
Q Consensus      1094 ~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~ 1125 (1428)
                      .....+++++.+.++++|++ .+ ++....+.
T Consensus        67 ~~~~~~d~~l~~~a~~dL~~-~l-gi~~~P~~   96 (108)
T d2ivda2          67 GLVEQDEDALAALAREELKA-LA-GVTARPSF   96 (108)
T ss_dssp             GGGGSCHHHHHHHHHHHHHH-HH-CCCSCCSE
T ss_pred             ccccCCHHHHHHHHHHHHHH-Hh-CCCCCCcE
Confidence            12234578999999999998 44 45444333

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.98  E-value=0.047  Score=54.54  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .+|+|||+|..|..-|..++++|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            569999999999999999999999999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.92  E-value=0.068  Score=55.57  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=26.6

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCC----eEEEEccCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKL----NVLLLELSS   43 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~----~v~~~~~~~   43 (1428)
                      -|+|||||.+||++|++|++++++.    ++.+++...
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            3899999999999999999987532    455665443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.80  E-value=0.077  Score=50.94  Aligned_cols=38  Identities=24%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             cccccceeeecC-CCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        707 LSFFDKIRIFSG-AGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       707 ~~~~~~dViIIG-aGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +++.+.+|.||| .|.-|.+-|..|+++|++|.+++++.
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            445667999999 69999999999999999999999864

>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.04  E-value=4.1  Score=44.08  Aligned_cols=132  Identities=11%  Similarity=0.072  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhhccCCC-------CCCHHHHHHHHHHHhHHHH-----HHHHHhhCCCccc----hHHHHHHHHHHHHHHH
Q psy10545       1282 LFEHLDGFEMDVMERT-------YITLDETLGYCYHVAGTIG-----LIIAHLIGVKEKD----TLNCARNLGIAFQLTN 1345 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~~~-------~~t~~~l~~Y~~~vag~vg-----~~~~~~~~~~~~~----~~~~a~~~g~a~q~~n 1345 (1428)
                      ...+..|...|+....       ..|++++..-+++=.++..     .+...+.|..+++    ...++.++|.|+|+.|
T Consensus       159 ~~~~~~GQ~ldl~~~~~~~~~~~~~t~~~Y~~~i~~KTa~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~D  238 (348)
T d1fpsa_         159 AYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQD  238 (348)
T ss_dssp             HHHHHHHHHHHHHHSCTTTCCSSSCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhccccccccccCHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccccchhhccccccccchHHHHHH
Confidence            4567789888875321       2378888877766655442     1222234443332    4568889999999999


Q ss_pred             HHhcch----------hhhcCCceeecHHHHHhcCCCcc------ccccccchHHH---HHH------HHHHHHHHHHHH
Q psy10545       1346 ISRDVI----------DDFYVGRCYLPLDWLRNEGLNKS------NFVLAENRKKL---FKV------VTRILDVAEFYY 1400 (1428)
Q Consensus      1346 ilrd~~----------~d~~~gR~ylP~~~~~~~~~~~~------~~~~~~~~~~~---~~~------~~~~~~~A~~~~ 1400 (1428)
                      =+-|+-          .|+..|+.-||.-..-+.+ +++      ++......+.+   ++.      .....+.++.++
T Consensus       239 DilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~~-~~~~r~~l~~~~~~~~~e~i~~v~~~i~~~g~~~~~~~~~~~~~  317 (348)
T d1fpsa_         239 DYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSY  317 (348)
T ss_dssp             HHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHTC-CHHHHHHHHHHSSSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHhhhhcchhccCcccccccCCccHHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence            998873          5888899999987765543 211      12222222222   222      223345578888


Q ss_pred             HHHHHhhcCCCccc
Q psy10545       1401 SSSLVKLNTLPLRS 1414 (1428)
Q Consensus      1401 ~~a~~~~~~lp~~~ 1414 (1428)
                      ..+.+.+..+|...
T Consensus       318 ~~a~~~l~~~~~~~  331 (348)
T d1fpsa_         318 RRLQELIEKHSNRL  331 (348)
T ss_dssp             HHHHHHHTTTCSSS
T ss_pred             HHHHHHHHcCCCcH
Confidence            88999999888654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.90  E-value=0.07  Score=49.94  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++++|||.|-.|...|..|.+.|++|+|+|.++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            368999999999999999999999999999864

>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Geranylgeranyl pyrophosphate synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.98  Score=47.91  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhccC---CCCCCHHHHHHHHHHHhHHHHHHHHHh---hCCCccchHHHHHHHHHHHHHHHHHhcch----
Q psy10545       1282 LFEHLDGFEMDVME---RTYITLDETLGYCYHVAGTIGLIIAHL---IGVKEKDTLNCARNLGIAFQLTNISRDVI---- 1351 (1428)
Q Consensus      1282 ~~~li~~~~~dl~~---~~~~t~~~l~~Y~~~vag~vg~~~~~~---~~~~~~~~~~~a~~~g~a~q~~nilrd~~---- 1351 (1428)
                      +.++..|...|+..   ....|++++..-+++=.|++-.+.+.+   ++-.+++...++.++|.|+|+.|=+.|+.    
T Consensus       114 ~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~KT~~Lf~~~~~~ga~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~  193 (291)
T d2q80a1         114 LLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEY  193 (291)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHhHhccccccccccccccCCHHHHHHHHHhccchhhHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHhhhhccchh
Confidence            45677788777752   234588888877776666665544433   33344567889999999999999888873    


Q ss_pred             -------hhhcCCceeecHHHHHhcCCCcccc---cc-c-cchHHHHH---------HHHHHHHHHHHHHHHHHHhhcCC
Q psy10545       1352 -------DDFYVGRCYLPLDWLRNEGLNKSNF---VL-A-ENRKKLFK---------VVTRILDVAEFYYSSSLVKLNTL 1410 (1428)
Q Consensus      1352 -------~d~~~gR~ylP~~~~~~~~~~~~~~---~~-~-~~~~~~~~---------~~~~~~~~A~~~~~~a~~~~~~l 1410 (1428)
                             .|+..|++-||.=..-+.+-....+   .. . .+.+.+.+         ++...-+.+++|.++|++.+..+
T Consensus       194 ~~GK~~g~Dl~~gK~Tlpvi~al~~~~~~~~l~~il~~~~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l  273 (291)
T d2q80a1         194 SENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDAR  273 (291)
T ss_dssp             ----CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccccchhccCCCcHHHHHHHHhcccHHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence                   6888899999986654433111111   11 1 11222222         22333456788889999999999


Q ss_pred             Ccc
Q psy10545       1411 PLR 1413 (1428)
Q Consensus      1411 p~~ 1413 (1428)
                      |..
T Consensus       274 ~~~  276 (291)
T d2q80a1         274 GGN  276 (291)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.68  E-value=0.12  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~  744 (1428)
                      ...+|+|||||-+|+=+|..|.+.|. +|+++++++
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            34589999999999999999999986 588998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.28  E-value=0.4  Score=43.66  Aligned_cols=56  Identities=11%  Similarity=-0.009  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC---eEEEEEecC---Cc--EEEcCEEEEcCC
Q psy10545        930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNN---KVNKVHLKN---GQ--IFDADIIVSNAD  985 (1428)
Q Consensus       930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~---~v~~V~~~~---G~--~i~ad~VV~A~~  985 (1428)
                      -..+.+.+.+.+++.|++|++|+.|+++...++   ....|.+.+   ++  ...+|.|++|++
T Consensus        59 D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          59 DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            466889999999999999999999999976432   224444432   22  457899999975

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.15  E-value=0.15  Score=50.31  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=30.7

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      ..++|||||++|+.+|..|.+.+.+.+|++++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~   39 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   39 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccc
Confidence            459999999999999999999888788888776543

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=88.78  E-value=0.085  Score=47.55  Aligned_cols=86  Identities=13%  Similarity=0.003  Sum_probs=55.7

Q ss_pred             ceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545       1015 SLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus      1015 s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
                      ++..|.++|+++ ++....+.-++.+..+.       +   .....+.+++.|.+.|.++|+++..+.++.......   
T Consensus         4 ~va~V~l~~~~~~~~~~~~GfG~LVP~~e~-------~---~g~~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~---   70 (112)
T d1seza2           4 PLSVVITTFKRENVKYPLEGFGVLVPSKEQ-------Q---HGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNR---   70 (112)
T ss_dssp             EEEEEEEEEEGGGBSSCCCSSEEECCGGGG-------G---GTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCG---
T ss_pred             cEEEEEEEEchHHcCCCCCceEEEeCCccc-------C---CCceEEEEEEecccCCCcCCCCcEEEEEEECCCCCc---
Confidence            677899999887 44222333344333221       0   012345677888889999999998888887553322   


Q ss_pred             CCcHHHHHHHHHHHHHHHHh
Q psy10545       1094 INWSEESIKLKNIVFMYLEQ 1113 (1428)
Q Consensus      1094 ~~~~~~~ee~~~~vl~~L~~ 1113 (1428)
                      ...+.+++++++.++++|++
T Consensus        71 ~~~~~~d~~l~~~a~~dl~~   90 (112)
T d1seza2          71 ELAKASRTELKEIVTSDLKQ   90 (112)
T ss_dssp             GGTTCCHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHH
Confidence            11233568899999999998

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.29  E-value=0.14  Score=49.73  Aligned_cols=33  Identities=24%  Similarity=0.192  Sum_probs=30.2

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|.|||.|.-|.+-|..|+++|++|+++++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            369999999999999999999999999999853

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.27  E-value=0.15  Score=50.46  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEcc
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQ  742 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa  742 (1428)
                      ++|.|||+|.-|.+.|..|+++|++|+++.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            4799999999999999999999999999965

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.25  E-value=0.24  Score=47.84  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.3

Q ss_pred             EEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545         11 FILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus        11 ~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      ++|||||++|+-+|..|.+   ..+|+|+|+++..
T Consensus         3 VvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~   34 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTT---TSEEEEECSSSSC
T ss_pred             EEEECCcHHHHHHHHHHHc---CCCEEEEeccccc
Confidence            7999999999999999976   3689999977543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.16  E-value=0.22  Score=47.13  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCC--CeEEEEccCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRD  744 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~  744 (1428)
                      ++.+|.|||+|--|.+.|+.|+..|  .+++++|...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4569999999999999999999988  4799999753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.12  E-value=0.27  Score=47.51  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      |.+|.|||-|..|..-|.+|.++|++|.+++++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            356999999999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.08  E-value=0.23  Score=44.62  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=30.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      +...|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4578999999999999999999999999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.34  Score=44.39  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=16.3

Q ss_pred             cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545         10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS   44 (1428)
Q Consensus        10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~   44 (1428)
                      .++|||||+.|+-+|..|.+.+  .+|++++.++.
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~   56 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDK   56 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCC--cEEEEEeeccc
Confidence            3455555555555555554432  35555554443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.40  E-value=0.59  Score=44.49  Aligned_cols=29  Identities=24%  Similarity=0.145  Sum_probs=26.8

Q ss_pred             cCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545        318 GAGIGGIALAIRLQTAGISTIILEQRDKL  346 (1428)
Q Consensus       318 g~~~~~~~~a~~La~~G~~V~lie~~~~~  346 (1428)
                      |++..|+-.|-.|++.|.+|+|||+.+.+
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            99999999999999999999999987644

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.32  E-value=0.23  Score=44.21  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=31.1

Q ss_pred             ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      .-..++|+|||+|.+|+-.|..|++.+.+|+++-+++
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3456899999999999999999999988877766543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.95  E-value=0.2  Score=47.77  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEc
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILE  741 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlE  741 (1428)
                      +...|+|||||..|+.-|..|.+.|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            46789999999999999999999999999994

>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]

Probab=84.80  E-value=12  Score=39.30  Aligned_cols=182  Identities=14%  Similarity=-0.002  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHc--CCCHHH
Q psy10545       1206 YKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK--MKEPAFLALQKIISIH--SFPVHL 1281 (1428)
Q Consensus      1206 ~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~p~~~~l~~~~~~~--~l~~~~ 1281 (1428)
                      .-++-+.++.-..||+.|+....++           ..+....+.+.....+..  ...|+..+|.+..++.  ...+.+
T Consensus        65 ~l~~~~~~~~f~~DD~~D~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~  133 (311)
T d1ps1a_          65 DLGVDLMSWFFLFDDLFDGPRGENP-----------EDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAW  133 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTSSGGGGCH-----------HHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHhcccccCccccCH-----------HHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHhcCHHH
Confidence            3456678888899999997422111           234445555555555543  3478999998877764  345555


Q ss_pred             HHHHHH-------HHHhhccC----CCCCCHHHHHHHHHHHhHHHHHHHH--HhhCCCc-------cchHHHHHHHHHHH
Q psy10545       1282 LFEHLD-------GFEMDVME----RTYITLDETLGYCYHVAGTIGLIIA--HLIGVKE-------KDTLNCARNLGIAF 1341 (1428)
Q Consensus      1282 ~~~li~-------~~~~dl~~----~~~~t~~~l~~Y~~~vag~vg~~~~--~~~~~~~-------~~~~~~a~~~g~a~ 1341 (1428)
                      ...+++       +.......    ..++|++|+..|-..+.|.--.+.+  -.+|..-       +.........+..+
T Consensus       134 ~~r~~~~~~~~~~~~~~e~~~r~~~~~~ps~~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~v~~~~~~~~l~~~~~~~~  213 (311)
T d1ps1a_         134 CARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVN  213 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhcccHHHHHHHHHHHcCCCCCHHHHhhcchHHHHHHHHHHH
Confidence            544444       44433322    2356788877777776664333222  2234421       12234556666777


Q ss_pred             HHHHHHhcchhhhcCCcee-ecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10545       1342 QLTNISRDVIDDFYVGRCY-LPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKL 1407 (1428)
Q Consensus      1342 q~~nilrd~~~d~~~gR~y-lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 1407 (1428)
                      -++|=+-.+..+...|-.. +-.-++.++|++.+         .+.+.+.+++....+.|.+++.-+
T Consensus       214 ~l~NDi~S~~kE~~~g~~~N~V~vlm~~~g~s~~---------~A~~~v~~~~~~~~~~~~~~~~~l  271 (311)
T d1ps1a_         214 LLLNDIASLEKEEARGEQNNMVMILRREHGWSKS---------RSVSHMQNEVRARLEQYLLLESCL  271 (311)
T ss_dssp             HHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHhhhccCCcCcHHHHHHHccCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777666542 33335566787743         344555566666666666655544

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=84.24  E-value=0.32  Score=46.38  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=31.2

Q ss_pred             cccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCC
Q psy10545        709 FFDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRD  744 (1428)
Q Consensus       709 ~~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~  744 (1428)
                      .++.+|+|||+|--|.+.|+.|+..|. +++++|.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            356899999999999999999999886 799998654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.71  E-value=0.3  Score=48.48  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             ceeeec-CCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545        712 KIRIFS-GAGIGGIALAIRLQTAGISTIILEQR  743 (1428)
Q Consensus       712 ~dViII-GaGiaGLsAA~~La~~G~~V~VlEa~  743 (1428)
                      ++|+|| |+|--|.+.|..|+++|++|+|..++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            358898 67999999999999999999999875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.57  E-value=0.39  Score=46.15  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             eeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +|.|||-|..|...|..|+++|++|.+++++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            69999999999999999999999999999853

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.43  Score=41.08  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545          9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV   45 (1428)
Q Consensus         9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~   45 (1428)
                      --++|+|.|.+|+++|..|.+.+  .+|.+.|.+...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCcCc
Confidence            35899999999999999998875  689999987543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=1.1  Score=42.75  Aligned_cols=28  Identities=29%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeE
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGIST  737 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V  737 (1428)
                      ...+|+|||||..|+-+|..+++.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            3468999999999999999999999763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=82.61  E-value=0.51  Score=45.08  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=32.6

Q ss_pred             ccccccceeeecCCCcchHHHHHHHHhCCC--eEEEEccC
Q psy10545        706 KLSFFDKIRIFSGAGIGGIALAIRLQTAGI--STIILEQR  743 (1428)
Q Consensus       706 ~~~~~~~dViIIGaGiaGLsAA~~La~~G~--~V~VlEa~  743 (1428)
                      +....+.+|.|||+|.-|-++|+.|...|.  ++.++|.+
T Consensus        15 ~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          15 EATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            333456799999999999999999999997  79999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.38  E-value=0.46  Score=43.54  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      +..+|+|||+|-+.+-.|..|++...+|+++-+++.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            357999999999999999999999999999988764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.07  E-value=0.5  Score=43.26  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK  745 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~  745 (1428)
                      ..+|+|||+|-+.+-.|..|++.+.+|+++-+++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            47999999999999999999999999999988764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.32  E-value=0.35  Score=48.23  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             ceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      ++|.|||.|--||..|..|+ .|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            46999999999999999887 599999999754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.45  E-value=0.61  Score=42.90  Aligned_cols=37  Identities=24%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545        710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP  746 (1428)
Q Consensus       710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~  746 (1428)
                      +..+|+|||+|-+.+-.|.+|++.-.+|+++-+++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            4589999999999999999999999999999988764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=80.13  E-value=0.51  Score=46.05  Aligned_cols=34  Identities=12%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545        711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD  744 (1428)
Q Consensus       711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~  744 (1428)
                      +.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4579999999999999999999999999999864